AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0537770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537770 MtrunA17_Chr4g0013011 94.643 168 9 0 1 168 1 168 3.95e-112 332
Msa0537770 MtrunA17_Chr2g0284691 54.717 159 72 0 13 171 21 179 1.58e-54 182
Msa0537770 MtrunA17_Chr2g0277061 44.512 164 89 2 7 168 8 171 1.31e-38 140
Msa0537770 MtrunA17_Chr3g0122211 40.252 159 94 1 14 171 17 175 8.34e-34 127
Msa0537770 MtrunA17_Chr8g0385121 39.506 162 96 1 10 171 9 168 1.91e-33 125
Msa0537770 MtrunA17_Chr8g0377631 37.870 169 94 3 14 171 11 179 6.47e-30 115
Msa0537770 MtrunA17_Chr4g0046841 37.423 163 96 2 11 171 22 180 9.20e-29 112
Msa0537770 MtrunA17_Chr8g0391931 37.179 156 95 2 14 168 9 162 3.74e-27 108
Msa0537770 MtrunA17_Chr8g0385131 31.928 166 113 0 3 168 5 170 2.15e-26 105
Msa0537770 MtrunA17_Chr8g0385181 33.735 166 104 3 5 168 7 168 2.62e-23 97.1
Msa0537770 MtrunA17_Chr7g0274871 35.172 145 84 3 11 153 127 263 3.36e-18 80.5
Msa0537770 MtrunA17_Chr8g0385171 31.325 166 103 6 5 168 7 163 1.87e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537770 AT1G29690.1 48.765 162 83 0 10 171 20 181 4.15e-46 160
Msa0537770 AT4G24290.1 38.150 173 105 2 1 171 1 173 6.02e-35 127
Msa0537770 AT4G24290.2 38.150 173 105 2 1 171 1 173 2.13e-33 126
Msa0537770 AT4G24290.3 38.150 173 105 2 1 171 1 173 2.13e-33 126
Msa0537770 AT1G28380.1 37.952 166 102 1 7 171 11 176 2.05e-29 114
Msa0537770 AT1G14780.1 38.415 164 95 3 14 171 12 175 1.23e-28 112

Find 55 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTGCATTTAGCTTTAC+TGG 0.187450 4_1:-16677525 Msa0537770:CDS
AATCACAAGGCAAATATATC+AGG 0.221324 4_1:-16677570 Msa0537770:CDS
TTAAAGTAACATCATCAATT+AGG 0.222244 4_1:-16677217 Msa0537770:exon
GTTTGATTGTTGAGATAATT+TGG 0.243908 4_1:-16679513 Msa0537770:five_prime_UTR
GTAAAGGTGGTTCAGGTTCT+AGG 0.258296 4_1:-16679345 Msa0537770:CDS
AATGGATCTCAGAGAGATTA+AGG 0.277122 4_1:+16679718 None:intergenic
TAAAGTAACATCATCAATTA+GGG 0.286782 4_1:-16677216 Msa0537770:three_prime_UTR
CTTTATTGTAAAGGTGGTTC+AGG 0.313423 4_1:-16679352 Msa0537770:CDS
CTAATATCCCTTGAAACATT+AGG 0.318295 4_1:+16679262 None:intergenic
AGTTATCATTATGTCCTGTT+TGG 0.348524 4_1:-16677329 Msa0537770:CDS
TTTGGTTTAATTTAGAATCT+GGG 0.350445 4_1:-16679488 Msa0537770:five_prime_UTR
AAAGGGCTATCCCAGTCAAT+TGG 0.381934 4_1:-16677389 Msa0537770:CDS
TTTAAGTTGTTTATCCAAAC+AGG 0.385442 4_1:+16677315 None:intergenic
TAACCATAGGAGACTCCGTT+TGG 0.435242 4_1:+16679864 None:intergenic
TTTGTAGGATTTATTCATCT+GGG 0.436607 4_1:-16679550 Msa0537770:five_prime_UTR
AACATCATCAATTAGGGGCT+CGG 0.440698 4_1:-16677210 Msa0537770:three_prime_UTR
ACTAGGTTGCTTTATTGTAA+AGG 0.459825 4_1:-16679361 Msa0537770:CDS
TTGTTGTTCCTAATGTTTCA+AGG 0.461331 4_1:-16679270 Msa0537770:CDS
GATGTGCGTGCTATAACAAC+TGG 0.465692 4_1:+16677169 None:intergenic
TAGAAGCTTTCGTGAACCTA+TGG 0.467449 4_1:-16679242 Msa0537770:CDS
TTTAATTTAGAATCTGGGTT+GGG 0.468070 4_1:-16679483 Msa0537770:five_prime_UTR
ACTAACGCTTTGCAAGCATT+AGG 0.469550 4_1:-16679409 Msa0537770:CDS
TATTGCAAGAAAATGTCAAA+AGG 0.473149 4_1:-16677407 Msa0537770:CDS
GATGGTGGATCCCAATTGAC+TGG 0.474592 4_1:+16677378 None:intergenic
AAGGGCTATCCCAGTCAATT+GGG 0.474810 4_1:-16677388 Msa0537770:CDS
CAATTGGGATCCACCATCCT+TGG 0.477002 4_1:-16677373 Msa0537770:CDS
GTAAAACCCATCTGAAGATA+AGG 0.491347 4_1:+16677470 None:intergenic
TTGATTGAAGGTGAAATCAA+TGG 0.498619 4_1:+16679700 None:intergenic
TAAAGGTGGTTCAGGTTCTA+GGG 0.498719 4_1:-16679344 Msa0537770:CDS
GATGTAAAACACTTGATTGA+AGG 0.504714 4_1:+16679688 None:intergenic
TATAAATACCTTGCCAAGGA+TGG 0.508433 4_1:+16677360 None:intergenic
TAACCAAACGGAGTCTCCTA+TGG 0.514692 4_1:-16679867 Msa0537770:five_prime_UTR
TGTGTCCCATCAGGGACTTA+AGG 0.517945 4_1:+16677136 None:intergenic
ATTGCAAGAAAATGTCAAAA+GGG 0.523361 4_1:-16677406 Msa0537770:CDS
GTTTAATTTAGAATCTGGGT+TGG 0.527533 4_1:-16679484 Msa0537770:five_prime_UTR
AGATTGATCAACAGTATCAA+AGG 0.542001 4_1:-16679315 Msa0537770:CDS
GATTGATCAACAGTATCAAA+GGG 0.546440 4_1:-16679314 Msa0537770:CDS
CGTACAGTGTAGAATAGTGT+TGG 0.548509 4_1:+16679835 None:intergenic
TGTTGTTCCTAATGTTTCAA+GGG 0.552228 4_1:-16679269 Msa0537770:CDS
GCTTTGCAAGCATTAGGAAG+AGG 0.553056 4_1:-16679403 Msa0537770:CDS
AGGTTGCTTTATTGTAAAGG+TGG 0.561342 4_1:-16679358 Msa0537770:CDS
TTTGTAGCTGAACCTTTGCA+AGG 0.570870 4_1:+16677442 None:intergenic
AAATACCTTGCCAAGGATGG+TGG 0.575242 4_1:+16677363 None:intergenic
TTGTAGCTGAACCTTTGCAA+GGG 0.576981 4_1:+16677443 None:intergenic
ACAGAACTCAAACGCACCAT+AGG 0.592182 4_1:+16679226 None:intergenic
TAAATATAAATACCTTGCCA+AGG 0.592523 4_1:+16677356 None:intergenic
GTGTTGGAAATTCTAACCAT+AGG 0.596797 4_1:+16679851 None:intergenic
ATCACAAGGCAAATATATCA+GGG 0.597269 4_1:-16677569 Msa0537770:CDS
TGTAGCTGAACCTTTGCAAG+GGG 0.613457 4_1:+16677444 None:intergenic
GGGATCCACCATCCTTGGCA+AGG 0.619864 4_1:-16677368 Msa0537770:CDS
ATATCAGGGAGCTTTCCTCT+CGG 0.621281 4_1:-16677555 Msa0537770:CDS
ATCAGGGACTTAAGGTAACA+AGG 0.622923 4_1:+16677144 None:intergenic
ATGGTGGATCCCAATTGACT+GGG 0.649373 4_1:+16677379 None:intergenic
AAAGTAACATCATCAATTAG+GGG 0.712787 4_1:-16677215 Msa0537770:three_prime_UTR
GCAGAGTTGAAGCTTCCGAG+AGG 0.719872 4_1:+16677540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAATTTTTGTTTTTCTT+TGG - chr4_1:16677921-16677940 Msa0537770:intron 15.0%
!! TTAGTATTTGTCAATTATAT+AGG - chr4_1:16678354-16678373 Msa0537770:intron 15.0%
!!! AATCTGAAATTATTATACAT+TGG + chr4_1:16678831-16678850 None:intergenic 15.0%
!!! TCTAAAAATGTCATTTTTAT+TGG - chr4_1:16679368-16679387 Msa0537770:CDS 15.0%
!!! GTTTTACATCAATACAAAAA+CGG - chr4_1:16677418-16677437 Msa0537770:CDS 20.0%
!!! TTTTACATCAATACAAAAAC+GGG - chr4_1:16677419-16677438 Msa0537770:CDS 20.0%
!!! TTTTGGTTTAATTTAGAATC+TGG - chr4_1:16677604-16677623 Msa0537770:intron 20.0%
!!! TTTGGTTTAATTTAGAATCT+GGG - chr4_1:16677605-16677624 Msa0537770:intron 20.0%
!!! TTGATGTTAATTTTGATACT+AGG - chr4_1:16677715-16677734 Msa0537770:intron 20.0%
!! TTGTGTTAAGTTATTTGTAT+TGG - chr4_1:16678032-16678051 Msa0537770:intron 20.0%
!! TGTGTTAAGTTATTTGTATT+GGG - chr4_1:16678033-16678052 Msa0537770:intron 20.0%
!!! ATGTATAATATGGTTTTGTA+TGG - chr4_1:16678305-16678324 Msa0537770:intron 20.0%
!!! TGTATAATATGGTTTTGTAT+GGG - chr4_1:16678306-16678325 Msa0537770:intron 20.0%
!! ATTTGTCAATTATATAGGTA+TGG - chr4_1:16678359-16678378 Msa0537770:intron 20.0%
!! TTAGAAAATGGATAAAGATA+GGG + chr4_1:16678615-16678634 None:intergenic 20.0%
!! ATTAGAAAATGGATAAAGAT+AGG + chr4_1:16678616-16678635 None:intergenic 20.0%
!!! GTCATATTTTTCCTTTTTTA+AGG - chr4_1:16678870-16678889 Msa0537770:intron 20.0%
!!! CTTCTTCATTACAAAATTTT+CGG + chr4_1:16678994-16679013 None:intergenic 20.0%
!! AACAAAAAAGGATATAACTA+TGG + chr4_1:16679441-16679460 None:intergenic 20.0%
!! GAGAAAATATGAAACAAAAA+AGG + chr4_1:16679453-16679472 None:intergenic 20.0%
!! TTAAAGTAACATCATCAATT+AGG - chr4_1:16679876-16679895 Msa0537770:five_prime_UTR 20.0%
!! TAAAGTAACATCATCAATTA+GGG - chr4_1:16679877-16679896 Msa0537770:five_prime_UTR 20.0%
!!! TTTGTTTTTGTTTTACAGAG+AGG - chr4_1:16677315-16677334 Msa0537770:CDS 25.0%
!! ATTTTGTGGATTTATTCATC+TGG - chr4_1:16677460-16677479 Msa0537770:CDS 25.0%
!! TTTTGTGGATTTATTCATCT+GGG - chr4_1:16677461-16677480 Msa0537770:CDS 25.0%
!!! TGTCTTTTTGATGTTTTTGT+AGG - chr4_1:16677528-16677547 Msa0537770:CDS 25.0%
!! TTTTGTAGGATTTATTCATC+TGG - chr4_1:16677542-16677561 Msa0537770:CDS 25.0%
! TTTGTAGGATTTATTCATCT+GGG - chr4_1:16677543-16677562 Msa0537770:CDS 25.0%
! GTTTGATTGTTGAGATAATT+TGG - chr4_1:16677580-16677599 Msa0537770:CDS 25.0%
!!! TGTTGAGATAATTTGGTTTT+TGG - chr4_1:16677587-16677606 Msa0537770:CDS 25.0%
!! TTTAATTTAGAATCTGGGTT+GGG - chr4_1:16677610-16677629 Msa0537770:intron 25.0%
! GTGTTAAGTTATTTGTATTG+GGG - chr4_1:16678034-16678053 Msa0537770:intron 25.0%
! ATCCTCAATAATATAACTCA+GGG + chr4_1:16678268-16678287 None:intergenic 25.0%
! TTTCTCGCTTATGTATAATA+TGG - chr4_1:16678295-16678314 Msa0537770:intron 25.0%
! TTTCGTTAGTAAACATGATT+TGG + chr4_1:16678707-16678726 None:intergenic 25.0%
! TTAATGCACACAAATTATCA+GGG + chr4_1:16678794-16678813 None:intergenic 25.0%
! AGTGTTTAATTCTTAACCAT+TGG - chr4_1:16678941-16678960 Msa0537770:intron 25.0%
!! TAATTCTTAACCATTGGTTA+TGG - chr4_1:16678947-16678966 Msa0537770:intron 25.0%
! GTTGAAAAGTTTATCCAATT+TGG - chr4_1:16679073-16679092 Msa0537770:intron 25.0%
! TATTAGTTGTCACATGATAA+TGG - chr4_1:16679138-16679157 Msa0537770:intron 25.0%
! AAAACAATGGTTACAACATA+TGG + chr4_1:16679167-16679186 None:intergenic 25.0%
! TGGTAAGATACTAAAAACAA+TGG + chr4_1:16679180-16679199 None:intergenic 25.0%
!!! TCAGTTTTGTATCAAATGTA+TGG + chr4_1:16679200-16679219 None:intergenic 25.0%
! GATTCAAAGTTTACAAAAAC+TGG + chr4_1:16679282-16679301 None:intergenic 25.0%
!!! TCACAATTTTAATATCGACT+TGG - chr4_1:16679412-16679431 Msa0537770:CDS 25.0%
!!! GGTAGATTATTTTAATCACA+AGG - chr4_1:16679510-16679529 Msa0537770:five_prime_UTR 25.0%
! TATTGCAAGAAAATGTCAAA+AGG - chr4_1:16679686-16679705 Msa0537770:five_prime_UTR 25.0%
! ATTGCAAGAAAATGTCAAAA+GGG - chr4_1:16679687-16679706 Msa0537770:five_prime_UTR 25.0%
! TAAATATAAATACCTTGCCA+AGG + chr4_1:16679740-16679759 None:intergenic 25.0%
!!! TTTAAGTTGTTTATCCAAAC+AGG + chr4_1:16679781-16679800 None:intergenic 25.0%
! AAAGTAACATCATCAATTAG+GGG - chr4_1:16679878-16679897 Msa0537770:five_prime_UTR 25.0%
! CTTTTGACAAACTAACCAAA+CGG - chr4_1:16677214-16677233 Msa0537770:three_prime_UTR 30.0%
GAAGTTAGAAAAAAACAACG+AGG - chr4_1:16677291-16677310 Msa0537770:CDS 30.0%
TTGATTGAAGGTGAAATCAA+TGG + chr4_1:16677396-16677415 None:intergenic 30.0%
GATGTAAAACACTTGATTGA+AGG + chr4_1:16677408-16677427 None:intergenic 30.0%
! GTTTAATTTAGAATCTGGGT+TGG - chr4_1:16677609-16677628 Msa0537770:intron 30.0%
!!! GAGAGTTTTTTGATGAGATA+TGG - chr4_1:16677632-16677651 Msa0537770:intron 30.0%
!!! AGTTTTTTGATGAGATATGG+AGG - chr4_1:16677635-16677654 Msa0537770:intron 30.0%
! ACTAGGTTGCTTTATTGTAA+AGG - chr4_1:16677732-16677751 Msa0537770:intron 30.0%
AGATTGATCAACAGTATCAA+AGG - chr4_1:16677778-16677797 Msa0537770:intron 30.0%
GATTGATCAACAGTATCAAA+GGG - chr4_1:16677779-16677798 Msa0537770:intron 30.0%
! TTGTTGTTCCTAATGTTTCA+AGG - chr4_1:16677823-16677842 Msa0537770:intron 30.0%
TGTTGTTCCTAATGTTTCAA+GGG - chr4_1:16677824-16677843 Msa0537770:intron 30.0%
CTAATATCCCTTGAAACATT+AGG + chr4_1:16677834-16677853 None:intergenic 30.0%
TAAGTTATTTGTATTGGGGT+TGG - chr4_1:16678038-16678057 Msa0537770:intron 30.0%
GAAGAAAAAGTTGCTAACAA+TGG - chr4_1:16678115-16678134 Msa0537770:intron 30.0%
! GGACATCTTAAACATTTTAG+AGG - chr4_1:16678172-16678191 Msa0537770:intron 30.0%
!! TTAGAGGCTCTGTTTAATTT+TGG - chr4_1:16678188-16678207 Msa0537770:intron 30.0%
!! TAGAGGCTCTGTTTAATTTT+GGG - chr4_1:16678189-16678208 Msa0537770:intron 30.0%
TCAATAATATAACTCAGGGT+AGG + chr4_1:16678264-16678283 None:intergenic 30.0%
TACCCTGAGTTATATTATTG+AGG - chr4_1:16678263-16678282 Msa0537770:intron 30.0%
CATCCTCAATAATATAACTC+AGG + chr4_1:16678269-16678288 None:intergenic 30.0%
ATGGCCTAAAATTAAGTCAT+TGG - chr4_1:16678378-16678397 Msa0537770:intron 30.0%
CTTAATGCACACAAATTATC+AGG + chr4_1:16678795-16678814 None:intergenic 30.0%
!!! TGTGTGCATTAAGTTTTTTG+AGG - chr4_1:16678802-16678821 Msa0537770:intron 30.0%
!! ATGACTAGTTCTATAGTACA+TGG + chr4_1:16678855-16678874 None:intergenic 30.0%
ACAAAACTAGGCCTTAAAAA+AGG + chr4_1:16678884-16678903 None:intergenic 30.0%
AACTTGATGCTAACAAAACT+AGG + chr4_1:16678896-16678915 None:intergenic 30.0%
TATAACTTCTCCATAACCAA+TGG + chr4_1:16678960-16678979 None:intergenic 30.0%
TTGGTTATGGAGAAGTTATA+TGG - chr4_1:16678960-16678979 Msa0537770:intron 30.0%
TTTCAACTCATAATCATTGC+AGG - chr4_1:16679018-16679037 Msa0537770:intron 30.0%
!! ATAGCTATGGTCTTTAGTTT+TGG + chr4_1:16679121-16679140 None:intergenic 30.0%
TGCACATTAGGAATTTGTAT+CGG + chr4_1:16679229-16679248 None:intergenic 30.0%
GTCAAAAATAGATGCACATT+AGG + chr4_1:16679241-16679260 None:intergenic 30.0%
! ACAAAAACTGGCTTAAAGAT+GGG + chr4_1:16679270-16679289 None:intergenic 30.0%
! TACAAAAACTGGCTTAAAGA+TGG + chr4_1:16679271-16679290 None:intergenic 30.0%
AATCACAAGGCAAATATATC+AGG - chr4_1:16679523-16679542 Msa0537770:five_prime_UTR 30.0%
ATCACAAGGCAAATATATCA+GGG - chr4_1:16679524-16679543 Msa0537770:five_prime_UTR 30.0%
ACAAAAACCTTATCTTCAGA+TGG - chr4_1:16679616-16679635 Msa0537770:five_prime_UTR 30.0%
CAAAAACCTTATCTTCAGAT+GGG - chr4_1:16679617-16679636 Msa0537770:five_prime_UTR 30.0%
AGTTATCATTATGTCCTGTT+TGG - chr4_1:16679764-16679783 Msa0537770:five_prime_UTR 30.0%
GTGTTGGAAATTCTAACCAT+AGG + chr4_1:16677245-16677264 None:intergenic 35.0%
AATGGATCTCAGAGAGATTA+AGG + chr4_1:16677378-16677397 None:intergenic 35.0%
! CCACAAAATCATGACTTTTG+AGG + chr4_1:16677449-16677468 None:intergenic 35.0%
! CCTCAAAAGTCATGATTTTG+TGG - chr4_1:16677446-16677465 Msa0537770:CDS 35.0%
! AGGTTGCTTTATTGTAAAGG+TGG - chr4_1:16677735-16677754 Msa0537770:intron 35.0%
CTTTATTGTAAAGGTGGTTC+AGG - chr4_1:16677741-16677760 Msa0537770:intron 35.0%
!! GTTTTCAAGAGGTAAAGTTG+AGG - chr4_1:16677898-16677917 Msa0537770:intron 35.0%
!! ACAGGGCATCAAAATTTTGA+GGG + chr4_1:16678215-16678234 None:intergenic 35.0%
GGAAGTAGTGGTTTAAAAAG+TGG - chr4_1:16678327-16678346 Msa0537770:intron 35.0%
AGTAGTGGTTTAAAAAGTGG+TGG - chr4_1:16678330-16678349 Msa0537770:intron 35.0%
GCCTAAAATTAAGTCATTGG+AGG - chr4_1:16678381-16678400 Msa0537770:intron 35.0%
! GCCTCCAATGACTTAATTTT+AGG + chr4_1:16678385-16678404 None:intergenic 35.0%
! AGATAGGGTATGATAATGAC+AGG + chr4_1:16678600-16678619 None:intergenic 35.0%
GACAGTGTAGGATTAGAAAA+TGG + chr4_1:16678627-16678646 None:intergenic 35.0%
GTTATGGAGAAGTTATATGG+AGG - chr4_1:16678963-16678982 Msa0537770:intron 35.0%
CATGTGACAACTAATAGCTA+TGG + chr4_1:16679134-16679153 None:intergenic 35.0%
! ATTTGTTACTTGACTGCAGA+TGG - chr4_1:16679489-16679508 Msa0537770:five_prime_UTR 35.0%
!! AACTCTGCATTTAGCTTTAC+TGG - chr4_1:16679568-16679587 Msa0537770:five_prime_UTR 35.0%
! AGATAAGGTTTTTGTAGCTG+CGG + chr4_1:16679611-16679630 None:intergenic 35.0%
GTAAAACCCATCTGAAGATA+AGG + chr4_1:16679626-16679645 None:intergenic 35.0%
TATAAATACCTTGCCAAGGA+TGG + chr4_1:16679736-16679755 None:intergenic 35.0%
CGTACAGTGTAGAATAGTGT+TGG + chr4_1:16677261-16677280 None:intergenic 40.0%
ACTAACGCTTTGCAAGCATT+AGG - chr4_1:16677684-16677703 Msa0537770:intron 40.0%
! TAAAGGTGGTTCAGGTTCTA+GGG - chr4_1:16677749-16677768 Msa0537770:intron 40.0%
TAGAAGCTTTCGTGAACCTA+TGG - chr4_1:16677851-16677870 Msa0537770:intron 40.0%
!! TGTTGTCTGCAGTTTTCAAG+AGG - chr4_1:16677887-16677906 Msa0537770:intron 40.0%
AGATGTCCTGATAGCACTTT+GGG + chr4_1:16678160-16678179 None:intergenic 40.0%
AAGATGTCCTGATAGCACTT+TGG + chr4_1:16678161-16678180 None:intergenic 40.0%
!! CACAGGGCATCAAAATTTTG+AGG + chr4_1:16678216-16678235 None:intergenic 40.0%
!!! TGGTTTTGTATGGGAAGTAG+TGG - chr4_1:16678315-16678334 Msa0537770:intron 40.0%
GACAGGCTATATCTAGCTAA+AGG + chr4_1:16678412-16678431 None:intergenic 40.0%
!! ATAGCCTGTCCTTTTTAGCA+TGG - chr4_1:16678422-16678441 Msa0537770:intron 40.0%
CCTTTGTGTCCATGCTAAAA+AGG + chr4_1:16678434-16678453 None:intergenic 40.0%
!! CCTTTTTAGCATGGACACAA+AGG - chr4_1:16678431-16678450 Msa0537770:intron 40.0%
! AAGGTCATGGTTTTCAACTG+CGG - chr4_1:16678450-16678469 Msa0537770:intron 40.0%
! AAACTGCCATTTATCCGCAT+CGG + chr4_1:16678515-16678534 None:intergenic 40.0%
GGATATGATAGAGACAGTGT+AGG + chr4_1:16678639-16678658 None:intergenic 40.0%
GCTACGATTTCAAGCCAAAT+TGG + chr4_1:16679090-16679109 None:intergenic 40.0%
! GTTTTACATTCCCCTTGCAA+AGG - chr4_1:16679639-16679658 Msa0537770:five_prime_UTR 40.0%
TTGTAGCTGAACCTTTGCAA+GGG + chr4_1:16679653-16679672 None:intergenic 40.0%
TTTGTAGCTGAACCTTTGCA+AGG + chr4_1:16679654-16679673 None:intergenic 40.0%
AACATCATCAATTAGGGGCT+CGG - chr4_1:16679883-16679902 Msa0537770:five_prime_UTR 40.0%
TAACCAAACGGAGTCTCCTA+TGG - chr4_1:16677226-16677245 Msa0537770:exon 45.0%
TAACCATAGGAGACTCCGTT+TGG + chr4_1:16677232-16677251 None:intergenic 45.0%
GCTTTGCAAGCATTAGGAAG+AGG - chr4_1:16677690-16677709 Msa0537770:intron 45.0%
! GTAAAGGTGGTTCAGGTTCT+AGG - chr4_1:16677748-16677767 Msa0537770:intron 45.0%
ACAGAACTCAAACGCACCAT+AGG + chr4_1:16677870-16677889 None:intergenic 45.0%
!!! GGGGTTGGTCTCTTTTTGTT+TGG - chr4_1:16678053-16678072 Msa0537770:intron 45.0%
! TCCTGATAGCACTTTGGGTT+CGG + chr4_1:16678155-16678174 None:intergenic 45.0%
TCAAGGTGAGTCATTGCACA+GGG + chr4_1:16678232-16678251 None:intergenic 45.0%
TTCAAGGTGAGTCATTGCAC+AGG + chr4_1:16678233-16678252 None:intergenic 45.0%
AGGGTAGGCTAACAAGTTCA+AGG + chr4_1:16678249-16678268 None:intergenic 45.0%
GTGTCCATGCTAAAAAGGAC+AGG + chr4_1:16678429-16678448 None:intergenic 45.0%
TAGCATGGACACAAAGGTCA+TGG - chr4_1:16678437-16678456 Msa0537770:intron 45.0%
! AGGTCATGGTTTTCAACTGC+GGG - chr4_1:16678451-16678470 Msa0537770:intron 45.0%
TCTCTATATTGCAGCCGATG+CGG - chr4_1:16678498-16678517 Msa0537770:intron 45.0%
!! TGGCAGTTTTGATGCCTTTG+CGG - chr4_1:16678526-16678545 Msa0537770:intron 45.0%
CCAAACAGGCCCTTATATTG+CGG - chr4_1:16678665-16678684 Msa0537770:intron 45.0%
AGTCTGCAGCCGCAATATAA+GGG + chr4_1:16678677-16678696 None:intergenic 45.0%
ATATCAGGGAGCTTTCCTCT+CGG - chr4_1:16679538-16679557 Msa0537770:five_prime_UTR 45.0%
TGTAGCTGAACCTTTGCAAG+GGG + chr4_1:16679652-16679671 None:intergenic 45.0%
AAAGGGCTATCCCAGTCAAT+TGG - chr4_1:16679704-16679723 Msa0537770:five_prime_UTR 45.0%
AAGGGCTATCCCAGTCAATT+GGG - chr4_1:16679705-16679724 Msa0537770:five_prime_UTR 45.0%
!! ATGGTGGATCCCAATTGACT+GGG + chr4_1:16679717-16679736 None:intergenic 45.0%
AAATACCTTGCCAAGGATGG+TGG + chr4_1:16679733-16679752 None:intergenic 45.0%
GATGTGCGTGCTATAACAAC+TGG + chr4_1:16679927-16679946 None:intergenic 45.0%
! CTGATAGCACTTTGGGTTCG+GGG + chr4_1:16678153-16678172 None:intergenic 50.0%
! CCTGATAGCACTTTGGGTTC+GGG + chr4_1:16678154-16678173 None:intergenic 50.0%
!! CGGGAGAGATTTGCTGGTTA+TGG - chr4_1:16678470-16678489 Msa0537770:intron 50.0%
TTGCAGCCGATGCGGATAAA+TGG - chr4_1:16678506-16678525 Msa0537770:intron 50.0%
!! GGCAGTTTTGATGCCTTTGC+GGG - chr4_1:16678527-16678546 Msa0537770:intron 50.0%
!! GCAGTTTTGATGCCTTTGCG+GGG - chr4_1:16678528-16678547 Msa0537770:intron 50.0%
TCATATCCTGCGCACCAAAC+AGG - chr4_1:16678651-16678670 Msa0537770:intron 50.0%
CCGCAATATAAGGGCCTGTT+TGG + chr4_1:16678668-16678687 None:intergenic 50.0%
CAGTCTGCAGCCGCAATATA+AGG + chr4_1:16678678-16678697 None:intergenic 50.0%
!! GCTTTGATAGTGTGCAGTGC+AGG - chr4_1:16678762-16678781 Msa0537770:intron 50.0%
!! GATGGTGGATCCCAATTGAC+TGG + chr4_1:16679718-16679737 None:intergenic 50.0%
CAATTGGGATCCACCATCCT+TGG - chr4_1:16679720-16679739 Msa0537770:five_prime_UTR 50.0%
! CCCGAACCCAAAGTGCTATC+AGG - chr4_1:16678151-16678170 Msa0537770:intron 55.0%
CAACTGCGGGAGAGATTTGC+TGG - chr4_1:16678464-16678483 Msa0537770:intron 55.0%
! GCGTTTGCTGCACACGTGAT+AGG + chr4_1:16678557-16678576 None:intergenic 55.0%
GTGTGCAGCAAACGCATGAG+AGG - chr4_1:16678562-16678581 Msa0537770:intron 55.0%
GCAGAGTTGAAGCTTCCGAG+AGG + chr4_1:16679556-16679575 None:intergenic 55.0%
CGTGATAGGTCTCCCCGCAA+AGG + chr4_1:16678543-16678562 None:intergenic 60.0%
!! TAAGGGCCTGTTTGGTGCGC+AGG + chr4_1:16678660-16678679 None:intergenic 60.0%
GGGATCCACCATCCTTGGCA+AGG - chr4_1:16679725-16679744 Msa0537770:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 16677147 16679968 16677147 ID=Msa0537770;Name=Msa0537770
chr4_1 mRNA 16677147 16679968 16677147 ID=Msa0537770-mRNA-1;Parent=Msa0537770;Name=Msa0537770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=504|1|1|1|1|1|2|89|209
chr4_1 exon 16677147 16677607 16677147 ID=Msa0537770-mRNA-1:exon:4955;Parent=Msa0537770-mRNA-1
chr4_1 exon 16679207 16679968 16679207 ID=Msa0537770-mRNA-1:exon:4954;Parent=Msa0537770-mRNA-1
chr4_1 five_prime_UTR 16679465 16679968 16679465 ID=Msa0537770-mRNA-1:five_prime_utr;Parent=Msa0537770-mRNA-1
chr4_1 CDS 16679207 16679464 16679207 ID=Msa0537770-mRNA-1:cds;Parent=Msa0537770-mRNA-1
chr4_1 CDS 16677236 16677607 16677236 ID=Msa0537770-mRNA-1:cds;Parent=Msa0537770-mRNA-1
chr4_1 three_prime_UTR 16677147 16677235 16677147 ID=Msa0537770-mRNA-1:three_prime_utr;Parent=Msa0537770-mRNA-1
Gene Sequence

>Msa0537770

ATGGAGGAGCATGTAGCAGCTTTGCACACTGCTACTAACGCTTTGCAAGCATTAGGAAGAGGTTTTGATGTTAATTTTGATACTAGGTTGCTTTATTGTAAAGGTGGTTCAGGTTCTAGGGTAGTTGAGATTGATCAACAGTATCAAAGGGATTTGTTTTTGTATGATGATGTTGTTGTTCCTAATGTTTCAAGGGATATTAGAAGCTTTCGTGAACCTATGGTGCGTTTGAGTTCTGTTGTCTGCAGTTTTCAAGAGATGGTAGATTATTTTAATCACAAGGCAAATATATCAGGGAGCTTTCCTCTCGGAAGCTTCAACTCTGCATTTAGCTTTACTGGTTCAAAACATGTTGATGCCGCAGCTACAAAAACCTTATCTTCAGATGGGTTTTACATTCCCCTTGCAAAGGTTCAGCTACAAAAATCAAACTTAATATTGCAAGAAAATGTCAAAAGGGCTATCCCAGTCAATTGGGATCCACCATCCTTGGCAAGGTATTTATATTTATACAAGTTATCATTATGTCCTGTTTGGATAAACAACTTAAAAAAGTGCTTATCATATAATTTCTTATGTATAAGCTATTTCTATAATATTTTAGCATTAACAAGAGTAAGCAAATATTAA

Protein sequence

>Msa0537770

MEEHVAALHTATNALQALGRGFDVNFDTRLLYCKGGSGSRVVEIDQQYQRDLFLYDDVVVPNVSRDIRSFREPMVRLSSVVCSFQEMVDYFNHKANISGSFPLGSFNSAFSFTGSKHVDAAATKTLSSDGFYIPLAKVQLQKSNLILQENVKRAIPVNWDPPSLARYLYLYKLSLCPVWINNLKKCLSYNFLCISYFYNILALTRVSKY*