Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449050 | sp|Q5R6J3|S35F5_PONAB | 29.484 | 407 | 252 | 8 | 13 | 393 | 68 | 465 | 5.52e-39 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449050 | G7L198 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa1449050 | 0.816267 | 6.040338e-52 | -8.615850e-47 |
| Msa0055070 | Msa1449050 | 0.801798 | 7.596290e-49 | -8.615850e-47 |
| Msa0108870 | Msa1449050 | 0.812982 | 3.223050e-51 | -8.615850e-47 |
| Msa1376130 | Msa1449050 | 0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa1417180 | Msa1449050 | 0.969131 | 1.129595e-129 | -8.615850e-47 |
| Msa1445220 | Msa1449050 | 0.803447 | 3.471654e-49 | -8.615850e-47 |
| Msa0619920 | Msa1449050 | 0.837889 | 3.981963e-57 | -8.615850e-47 |
| Msa0679550 | Msa1449050 | 0.800025 | 1.748899e-48 | -8.615850e-47 |
| Msa0140170 | Msa1449050 | 0.811612 | 6.418182e-51 | -8.615850e-47 |
| Msa0145110 | Msa1449050 | 0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0154920 | Msa1449050 | 0.804255 | 2.358135e-49 | -8.615850e-47 |
| Msa1317270 | Msa1449050 | 0.811245 | 7.709342e-51 | -8.615850e-47 |
| Msa1105500 | Msa1449050 | 0.818551 | 1.847583e-52 | -8.615850e-47 |
| Msa0322680 | Msa1449050 | 0.815157 | 1.067423e-51 | -8.615850e-47 |
| Msa1148650 | Msa1449050 | 0.997749 | 1.951708e-248 | -8.615850e-47 |
| Msa0519390 | Msa1449050 | 0.802537 | 5.351834e-49 | -8.615850e-47 |
| Msa0527910 | Msa1449050 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0537770 | Msa1449050 | 0.800650 | 1.304498e-48 | -8.615850e-47 |
| Msa0853950 | Msa1449050 | 0.805438 | 1.334988e-49 | -8.615850e-47 |
| Msa0901320 | Msa1449050 | 0.818881 | 1.554894e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449050 | MtrunA17_Chr7g0237321 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 848 |
| Msa1449050 | MtrunA17_Chr1g0149511 | 29.471 | 397 | 239 | 13 | 13 | 398 | 5 | 371 | 2.73e-34 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449050 | AT3G07080.1 | 68.646 | 421 | 112 | 4 | 7 | 415 | 1 | 413 | 0.0 | 517 |
| Msa1449050 | AT4G32140.1 | 29.756 | 410 | 250 | 15 | 12 | 405 | 3 | 390 | 2.59e-34 | 132 |
Find 121 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTCAGTTTCTTGGATTTC+TGG | -0.002991 | tig0032425:-13953 | Msa1449050:CDS |
| TTGATTCCAATTGTTGAAAT+TGG | 0.131160 | tig0032425:-15241 | Msa1449050:CDS |
| TAGAAATTGAATCCAAATTA+TGG | 0.133988 | tig0032425:+15712 | None:intergenic |
| CATTTAATTTCTTGCGAATA+AGG | 0.142549 | tig0032425:+14007 | None:intergenic |
| AAGAGTGATAAGAGTTTAAA+AGG | 0.154666 | tig0032425:-15178 | Msa1449050:CDS |
| GAATCATCCAACCCATAATT+TGG | 0.172630 | tig0032425:-15724 | Msa1449050:five_prime_UTR |
| CCTTGGTGAAATTGAGTATT+AGG | 0.200211 | tig0032425:+13896 | None:intergenic |
| TGTTGAAATTGGGAGGTATT+TGG | 0.227476 | tig0032425:-15230 | Msa1449050:CDS |
| GCAGCTGAATCTTGTGTTCT+TGG | 0.228024 | tig0032425:+11182 | None:intergenic |
| GTTGCCTCAAATCCTCTTCT+TGG | 0.248584 | tig0032425:-14078 | Msa1449050:CDS |
| AAGCAGCTTGGTCTGATTAT+TGG | 0.259880 | tig0032425:-13847 | Msa1449050:CDS |
| TAATAGCTGTTGCAATAATA+TGG | 0.277942 | tig0032425:-15354 | Msa1449050:CDS |
| GCTACAAAAGAGTCGTAAAT+TGG | 0.278178 | tig0032425:+15564 | None:intergenic |
| TGGACATTCTCCTCCCTTCA+TGG | 0.295170 | tig0032425:-11345 | Msa1449050:CDS |
| GCTAGTATGGCTCAGTTTCT+TGG | 0.297598 | tig0032425:-13961 | Msa1449050:CDS |
| GCTCAGTTTCTTGGATTTCT+GGG | 0.301569 | tig0032425:-13952 | Msa1449050:CDS |
| GTTTATTGATATGCCCGTTT+TGG | 0.303197 | tig0032425:-14913 | Msa1449050:CDS |
| TGGGTTGGATGATTCAATTA+TGG | 0.321612 | tig0032425:+15732 | None:intergenic |
| AAGAGTTTAAAAGGGAGGTT+AGG | 0.322283 | tig0032425:-15169 | Msa1449050:CDS |
| TATGGTGGGTTCAAAAGATT+TGG | 0.328397 | tig0032425:-15416 | Msa1449050:CDS |
| AAAGCATGGAAATGGGGTTT+AGG | 0.333836 | tig0032425:-15388 | Msa1449050:CDS |
| AGTCTTGGTGATTCACAATC+TGG | 0.338502 | tig0032425:-14111 | Msa1449050:CDS |
| TACCTCCCAATTTCAACAAT+TGG | 0.341869 | tig0032425:+15235 | None:intergenic |
| GCTGTCATGATCGGCTTTGC+TGG | 0.343637 | tig0032425:-11305 | Msa1449050:CDS |
| ATTGGTTGGTCGGGTTGGTT+TGG | 0.346117 | tig0032425:-15005 | Msa1449050:CDS |
| ATGTGCTGAGTGATTACTTA+TGG | 0.347004 | tig0032425:-11457 | Msa1449050:CDS |
| AGGTATTTGGAGGATTCTTA+TGG | 0.349869 | tig0032425:-15217 | Msa1449050:CDS |
| AGAAATTGAATCCAAATTAT+GGG | 0.350708 | tig0032425:+15713 | None:intergenic |
| CCTATCAAAACCAGGATTGC+TGG | 0.353043 | tig0032425:-11483 | Msa1449050:intron |
| CTTATGGTGATTTATTGTTT+TGG | 0.353615 | tig0032425:-15201 | Msa1449050:CDS |
| TGGATAGTAAAGCATGGAAA+TGG | 0.360167 | tig0032425:-15396 | Msa1449050:CDS |
| ATTTAATTTCTTGCGAATAA+GGG | 0.360980 | tig0032425:+14008 | None:intergenic |
| TTCCAAGTAAGCATATAAAA+AGG | 0.364591 | tig0032425:+13868 | None:intergenic |
| TGATTCCAATTGTTGAAATT+GGG | 0.366697 | tig0032425:-15240 | Msa1449050:CDS |
| GGGTTGGATGATTCAATTAT+GGG | 0.370525 | tig0032425:+15733 | None:intergenic |
| GGATAGTAAAGCATGGAAAT+GGG | 0.381171 | tig0032425:-15395 | Msa1449050:CDS |
| CATATGCAATTCATTATTTG+TGG | 0.382385 | tig0032425:-15266 | Msa1449050:CDS |
| AAAGAATGGTGAAGCTAGTA+TGG | 0.384418 | tig0032425:-13974 | Msa1449050:CDS |
| CTTGGTGAAATTGAGTATTA+GGG | 0.387036 | tig0032425:+13897 | None:intergenic |
| GGAGGATTGGTTGGTCGGGT+TGG | 0.398920 | tig0032425:-15010 | Msa1449050:CDS |
| AGGTGGATGGGATTATTGAT+AGG | 0.423853 | tig0032425:-15072 | Msa1449050:CDS |
| CGTGACTGTAGTATACTTCA+AGG | 0.427227 | tig0032425:+14862 | None:intergenic |
| AGAGTTTAAAAGGGAGGTTA+GGG | 0.430574 | tig0032425:-15168 | Msa1449050:CDS |
| AAATTGAGTATTAGGGCAAC+TGG | 0.432650 | tig0032425:+13904 | None:intergenic |
| TAGTTGGAGGATTGGTTGGT+CGG | 0.434753 | tig0032425:-15015 | Msa1449050:CDS |
| CTTTAGTGTTCTTCTCTGCA+TGG | 0.443808 | tig0032425:-14151 | Msa1449050:CDS |
| TTTAGTGTTCTTCTCTGCAT+GGG | 0.445703 | tig0032425:-14150 | Msa1449050:CDS |
| TTGGTTGATATATATAGATA+TGG | 0.447856 | tig0032425:-15434 | Msa1449050:exon |
| CTTTGCTGGAATCAATATTC+CGG | 0.452225 | tig0032425:-11291 | Msa1449050:CDS |
| GGGATTATTGATAGGAATGA+TGG | 0.456021 | tig0032425:-15064 | Msa1449050:CDS |
| GAGGTTAGGGGAGTCAGAGC+AGG | 0.456521 | tig0032425:-15155 | Msa1449050:CDS |
| TGGTTCTGAATTGCTGCCTT+CGG | 0.458823 | tig0032425:-15044 | Msa1449050:CDS |
| AGAGTGATAAGAGTTTAAAA+GGG | 0.465346 | tig0032425:-15177 | Msa1449050:CDS |
| CAAAGAGGGTTGGATGAGAA+AGG | 0.478907 | tig0032425:-14968 | Msa1449050:CDS |
| CCTTCGGATGATGTAGTTGG+AGG | 0.489732 | tig0032425:-15028 | Msa1449050:CDS |
| CTCAGTTTCTTGGATTTCTG+GGG | 0.495232 | tig0032425:-13951 | Msa1449050:CDS |
| CTGCCTTCGGATGATGTAGT+TGG | 0.499551 | tig0032425:-15031 | Msa1449050:CDS |
| GCCATTGTCGATACCATCAC+TGG | 0.501679 | tig0032425:-11365 | Msa1449050:CDS |
| GTGATAAGAGTTTAAAAGGG+AGG | 0.501849 | tig0032425:-15174 | Msa1449050:CDS |
| ACCTGTCGGATAATCAAAAT+CGG | 0.502142 | tig0032425:+15640 | None:intergenic |
| GTCTCCAAGAAGAGGATTTG+AGG | 0.508065 | tig0032425:+14074 | None:intergenic |
| TTGGTTATTGATGAGGTGGA+TGG | 0.510641 | tig0032425:-15085 | Msa1449050:CDS |
| GTTGATATATATAGATATGG+TGG | 0.511000 | tig0032425:-15431 | Msa1449050:exon |
| TTGAAAATGTTGATCAAAGA+GGG | 0.511678 | tig0032425:-14982 | Msa1449050:CDS |
| AGTTGGAGGATTGGTTGGTC+GGG | 0.512706 | tig0032425:-15014 | Msa1449050:CDS |
| GGAACAATAATTGTAAGTCT+TGG | 0.513896 | tig0032425:-14126 | Msa1449050:CDS |
| CATATGTAAGTAACAAGAAA+CGG | 0.514779 | tig0032425:+15283 | None:intergenic |
| TGGATGATTCAATTATGGGT+TGG | 0.516151 | tig0032425:+15737 | None:intergenic |
| AAAATACAATGTACAGGCTA+TGG | 0.518562 | tig0032425:+11155 | None:intergenic |
| ATTGAATCCAAATTATGGGT+TGG | 0.518853 | tig0032425:+15717 | None:intergenic |
| AACAAGAAACGGCGAGACAC+CGG | 0.521941 | tig0032425:+15294 | None:intergenic |
| GATGTAGTTGGAGGATTGGT+TGG | 0.522578 | tig0032425:-15019 | Msa1449050:CDS |
| TGTGCTGAGTGATTACTTAT+GGG | 0.526669 | tig0032425:-11456 | Msa1449050:CDS |
| TGAAATTGGGAGGTATTTGG+AGG | 0.527355 | tig0032425:-15227 | Msa1449050:CDS |
| AAGAAATTAAATGACGATGA+TGG | 0.528803 | tig0032425:-13997 | Msa1449050:CDS |
| GTTGAAAATGTTGATCAAAG+AGG | 0.534234 | tig0032425:-14983 | Msa1449050:CDS |
| TATCGACAATGGCAGCCAAT+GGG | 0.535322 | tig0032425:+11375 | None:intergenic |
| GGATGATGTAGTTGGAGGAT+TGG | 0.538766 | tig0032425:-15023 | Msa1449050:CDS |
| AAATGTTGATCAAAGAGGGT+TGG | 0.544769 | tig0032425:-14978 | Msa1449050:CDS |
| TGGTTATTGATGAGGTGGAT+GGG | 0.545204 | tig0032425:-15084 | Msa1449050:CDS |
| ATGCTTACTTGGAAGCAGCT+TGG | 0.546413 | tig0032425:-13859 | Msa1449050:CDS |
| TCAACCACAGTAGCTACAGC+TGG | 0.546656 | tig0032425:-11413 | Msa1449050:CDS |
| TTGATATATATAGATATGGT+GGG | 0.553205 | tig0032425:-15430 | Msa1449050:exon |
| TGAGGCGAGCGGTGAAGCTG+TGG | 0.553892 | tig0032425:-15113 | Msa1449050:CDS |
| CTTGGTCTGATTATTGGCAA+AGG | 0.556086 | tig0032425:-13841 | Msa1449050:intron |
| TGATGTTAGAAGAACAGCCT+TGG | 0.557047 | tig0032425:+11433 | None:intergenic |
| AATGACGATGATGGAAAGAA+TGG | 0.558044 | tig0032425:-13988 | Msa1449050:CDS |
| CGGTGAAGCTGTGGAGTCGT+TGG | 0.559011 | tig0032425:-15104 | Msa1449050:CDS |
| GATAGTAAAGCATGGAAATG+GGG | 0.564186 | tig0032425:-15394 | Msa1449050:CDS |
| ACTCACAATTCAAGTCCCAT+TGG | 0.565061 | tig0032425:-11390 | Msa1449050:CDS |
| TGCTCCGAGGTAATCCATGA+AGG | 0.566177 | tig0032425:+11331 | None:intergenic |
| TTCCAATTGTTGAAATTGGG+AGG | 0.572344 | tig0032425:-15237 | Msa1449050:CDS |
| AAAGAGGGTTGGATGAGAAA+GGG | 0.575130 | tig0032425:-14967 | Msa1449050:CDS |
| GTCGTTGGTTATTGATGAGG+TGG | 0.576267 | tig0032425:-15089 | Msa1449050:CDS |
| GTATCGACAATGGCAGCCAA+TGG | 0.576644 | tig0032425:+11374 | None:intergenic |
| CCTCCCTTCATGGATTACCT+CGG | 0.584550 | tig0032425:-11335 | Msa1449050:CDS |
| AGTGTTCTTCTCTGCATGGG+AGG | 0.584870 | tig0032425:-14147 | Msa1449050:CDS |
| ATCAACAGAAACTACTGCTG+TGG | 0.586651 | tig0032425:-11252 | Msa1449050:CDS |
| GATACTTCTTAGAGATAATG+AGG | 0.587046 | tig0032425:-15131 | Msa1449050:CDS |
| AAAAGCTAGTGAAACCAAGA+AGG | 0.587390 | tig0032425:+14203 | None:intergenic |
| GGTTGGATGAGAAAGGGCGT+TGG | 0.588582 | tig0032425:-14961 | Msa1449050:CDS |
| AAGATTTGGATAGTAAAGCA+TGG | 0.592190 | tig0032425:-15402 | Msa1449050:CDS |
| GGAGCAATAGCTGTCATGAT+CGG | 0.595414 | tig0032425:-11314 | Msa1449050:CDS |
| GATTTGCTAAAAGTTTCGAC+CGG | 0.599285 | tig0032425:+11272 | None:intergenic |
| GAGTTTAAAAGGGAGGTTAG+GGG | 0.604921 | tig0032425:-15167 | Msa1449050:CDS |
| GGGAGGAGAATGTCCAGTGA+TGG | 0.613474 | tig0032425:+11352 | None:intergenic |
| TCCAGTGATGGTATCGACAA+TGG | 0.618439 | tig0032425:+11364 | None:intergenic |
| GTGCAATCTGTTGTAGATGC+CGG | 0.622214 | tig0032425:-15313 | Msa1449050:CDS |
| CAGTGAAGAATAAGAACTAG+AGG | 0.622553 | tig0032425:-11028 | Msa1449050:three_prime_UTR |
| GAGTGATTACTTATGGGCCA+AGG | 0.635867 | tig0032425:-11450 | Msa1449050:CDS |
| GCTCCGAGGTAATCCATGAA+GGG | 0.637265 | tig0032425:+11332 | None:intergenic |
| GCGAATAAGGGTGATATACA+CGG | 0.641125 | tig0032425:+14020 | None:intergenic |
| TGTCGGATAATCAAAATCGG+TGG | 0.643264 | tig0032425:+15643 | None:intergenic |
| GGAGTCGTTGGTTATTGATG+AGG | 0.652711 | tig0032425:-15092 | Msa1449050:CDS |
| GAGTCCAGCTGTAGCTACTG+TGG | 0.652955 | tig0032425:+11409 | None:intergenic |
| CCTCCAACTACATCATCCGA+AGG | 0.666233 | tig0032425:+15028 | None:intergenic |
| CTTGAAGTATACTACAGTCA+CGG | 0.678447 | tig0032425:-14861 | Msa1449050:intron |
| CCTAATACTCAATTTCACCA+AGG | 0.684236 | tig0032425:-13896 | Msa1449050:CDS |
| CTTAGAGATAATGAGGCGAG+CGG | 0.687600 | tig0032425:-15124 | Msa1449050:CDS |
| ACACAGTACGATGTACCTGT+CGG | 0.694325 | tig0032425:+15626 | None:intergenic |
| TCATGACAGCTATTGCTCCG+AGG | 0.724191 | tig0032425:+11318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTATTATAACAGA+AGG | + | tig0032425:13956-13975 | None:intergenic | 10.0% |
| !! | TATACATATATAAATAACCA+AGG | + | tig0032425:13546-13565 | None:intergenic | 15.0% |
| !!! | AAATTATGGTATCATTTTTA+GGG | + | tig0032425:13806-13825 | None:intergenic | 15.0% |
| !!! | AAAATTATGGTATCATTTTT+AGG | + | tig0032425:13807-13826 | None:intergenic | 15.0% |
| !!! | TTCATAGAAATCTAAAATTA+TGG | + | tig0032425:13820-13839 | None:intergenic | 15.0% |
| !!! | AATTTTAGATTTCTATGAAT+AGG | - | tig0032425:13821-13840 | Msa1449050:intron | 15.0% |
| !! | TAGTCAAAAAAAAAATGAAT+AGG | - | tig0032425:13852-13871 | Msa1449050:CDS | 15.0% |
| !!! | AATAAATTCTAAAATAAGGT+GGG | + | tig0032425:14309-14328 | None:intergenic | 15.0% |
| !!! | AAATAAATTCTAAAATAAGG+TGG | + | tig0032425:14310-14329 | None:intergenic | 15.0% |
| !!! | CTCAAATAAATTCTAAAATA+AGG | + | tig0032425:14313-14332 | None:intergenic | 15.0% |
| !!! | TCTCAAATAAATTCTTTTTT+TGG | + | tig0032425:14414-14433 | None:intergenic | 15.0% |
| !! | AAAAGAATTTATTTGAGAAA+AGG | - | tig0032425:14416-14435 | Msa1449050:intron | 15.0% |
| !! | AAAGAATTTATTTGAGAAAA+GGG | - | tig0032425:14417-14436 | Msa1449050:intron | 15.0% |
| !! | TTTAAAAATAACTCAATACT+GGG | + | tig0032425:14498-14517 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAACTCAATAC+TGG | + | tig0032425:14499-14518 | None:intergenic | 15.0% |
| !! | AGAAATTGAATCCAAATTAT+GGG | + | tig0032425:11055-11074 | None:intergenic | 20.0% |
| !! | TAGAAATTGAATCCAAATTA+TGG | + | tig0032425:11056-11075 | None:intergenic | 20.0% |
| !!! | TATTTTCTAGAATTGCAAAA+TGG | - | tig0032425:11235-11254 | Msa1449050:CDS | 20.0% |
| !!! | ATTTTCTAGAATTGCAAAAT+GGG | - | tig0032425:11236-11255 | Msa1449050:CDS | 20.0% |
| !!! | TTGGTTGATATATATAGATA+TGG | - | tig0032425:11331-11350 | Msa1449050:CDS | 20.0% |
| !! | TTGATATATATAGATATGGT+GGG | - | tig0032425:11335-11354 | Msa1449050:CDS | 20.0% |
| !! | AGTAGTTAATGAATATAACA+AGG | - | tig0032425:12092-12111 | Msa1449050:intron | 20.0% |
| !! | TCTAGGTATTCAAATAAATA+TGG | - | tig0032425:12182-12201 | Msa1449050:intron | 20.0% |
| !! | ATGTATATATGAACCTAATT+TGG | + | tig0032425:12231-12250 | None:intergenic | 20.0% |
| !! | TGAAAAAGTAACTAATTTAG+AGG | + | tig0032425:12493-12512 | None:intergenic | 20.0% |
| !!! | ATTTAATTTCTTGCGAATAA+GGG | + | tig0032425:12760-12779 | None:intergenic | 20.0% |
| !! | TAAATGATAGTCATGATTAT+AGG | - | tig0032425:13055-13074 | Msa1449050:intron | 20.0% |
| !! | TGCAAAATACAATATGTAAA+GGG | + | tig0032425:13254-13273 | None:intergenic | 20.0% |
| !! | TTGCAAAATACAATATGTAA+AGG | + | tig0032425:13255-13274 | None:intergenic | 20.0% |
| !! | TATAACTTACAACTATTGAT+TGG | + | tig0032425:13463-13482 | None:intergenic | 20.0% |
| !!! | ATATTTCTTCATATTTTGCT+TGG | - | tig0032425:13763-13782 | Msa1449050:intron | 20.0% |
| !! | TCAAAAGAATTTGTGATTTA+TGG | + | tig0032425:13895-13914 | None:intergenic | 20.0% |
| !!! | CAAATAAATTCTTTTTTTGG+TGG | + | tig0032425:14411-14430 | None:intergenic | 20.0% |
| !! | AAGAATTTATTTGAGAAAAG+GGG | - | tig0032425:14418-14437 | Msa1449050:intron | 20.0% |
| !! | GATAATTCTTATGAGTTTAA+TGG | + | tig0032425:14584-14603 | None:intergenic | 20.0% |
| !! | ATCTTAAAAGGAAAAAAGTT+GGG | + | tig0032425:14955-14974 | None:intergenic | 20.0% |
| !! | CTGTTCAAATATTTGAAAAT+TGG | - | tig0032425:15126-15145 | Msa1449050:CDS | 20.0% |
| !!! | ATTTTGTAATTAAAGGTGAA+AGG | - | tig0032425:15173-15192 | Msa1449050:CDS | 20.0% |
| !! | TTTAGTTGTTGCAAAAAATT+TGG | + | tig0032425:15700-15719 | None:intergenic | 20.0% |
| !!! | TAGATTTTGAGTTTTGAGAA+GGG | - | tig0032425:11305-11324 | Msa1449050:CDS | 25.0% |
| ! | GTTGATATATATAGATATGG+TGG | - | tig0032425:11334-11353 | Msa1449050:CDS | 25.0% |
| ! | TAATAGCTGTTGCAATAATA+TGG | - | tig0032425:11411-11430 | Msa1449050:CDS | 25.0% |
| ! | CATATGTAAGTAACAAGAAA+CGG | + | tig0032425:11485-11504 | None:intergenic | 25.0% |
| ! | CATATGCAATTCATTATTTG+TGG | - | tig0032425:11499-11518 | Msa1449050:intron | 25.0% |
| ! | TTGATTCCAATTGTTGAAAT+TGG | - | tig0032425:11524-11543 | Msa1449050:intron | 25.0% |
| ! | TGATTCCAATTGTTGAAATT+GGG | - | tig0032425:11525-11544 | Msa1449050:intron | 25.0% |
| !! | CTTATGGTGATTTATTGTTT+TGG | - | tig0032425:11564-11583 | Msa1449050:intron | 25.0% |
| ! | AAGAGTGATAAGAGTTTAAA+AGG | - | tig0032425:11587-11606 | Msa1449050:intron | 25.0% |
| ! | AGAGTGATAAGAGTTTAAAA+GGG | - | tig0032425:11588-11607 | Msa1449050:intron | 25.0% |
| ! | TTGAAAATGTTGATCAAAGA+GGG | - | tig0032425:11783-11802 | Msa1449050:intron | 25.0% |
| ! | GCTTAAATTAGCAGAAATTA+TGG | - | tig0032425:11985-12004 | Msa1449050:intron | 25.0% |
| ! | AAAATCGAAAACAATTTCGA+TGG | - | tig0032425:12031-12050 | Msa1449050:intron | 25.0% |
| ! | ATTTGAATACCTAGAAATCA+TGG | + | tig0032425:12177-12196 | None:intergenic | 25.0% |
| ! | ATATATGAACCTAATTTGGA+GGG | + | tig0032425:12227-12246 | None:intergenic | 25.0% |
| ! | TATATATGAACCTAATTTGG+AGG | + | tig0032425:12228-12247 | None:intergenic | 25.0% |
| ! | GTATGTTTGAATAGAAATTG+TGG | + | tig0032425:12296-12315 | None:intergenic | 25.0% |
| ! | AAACATACACAGAAAAATTG+TGG | - | tig0032425:12308-12327 | Msa1449050:intron | 25.0% |
| ! | GTAAATGCAAATCAAATACA+TGG | + | tig0032425:12418-12437 | None:intergenic | 25.0% |
| ! | AACAAAATTCGACAACAATT+TGG | + | tig0032425:12444-12463 | None:intergenic | 25.0% |
| !! | CATTTAATTTCTTGCGAATA+AGG | + | tig0032425:12761-12780 | None:intergenic | 25.0% |
| ! | AAGAAATTAAATGACGATGA+TGG | - | tig0032425:12768-12787 | Msa1449050:intron | 25.0% |
| ! | AGTAAGCATATAAAAAGGTT+CGG | + | tig0032425:12895-12914 | None:intergenic | 25.0% |
| !! | AACCTTTTTATATGCTTACT+TGG | - | tig0032425:12895-12914 | Msa1449050:intron | 25.0% |
| ! | TTCCAAGTAAGCATATAAAA+AGG | + | tig0032425:12900-12919 | None:intergenic | 25.0% |
| !! | GCTATCTTTTACATTTTCTT+TGG | - | tig0032425:12956-12975 | Msa1449050:intron | 25.0% |
| !! | AGTTCTTTATGCATTTTTCT+AGG | - | tig0032425:12997-13016 | Msa1449050:intron | 25.0% |
| !! | GTTCTTTATGCATTTTTCTA+GGG | - | tig0032425:12998-13017 | Msa1449050:intron | 25.0% |
| ! | AAGATGACTTTACATGTAAA+TGG | - | tig0032425:13088-13107 | Msa1449050:intron | 25.0% |
| !!! | TGTTCTTGTTGTTTTATGAA+TGG | - | tig0032425:13196-13215 | Msa1449050:intron | 25.0% |
| !! | TTTCTAAAAAGAACCCTTAA+AGG | + | tig0032425:13341-13360 | None:intergenic | 25.0% |
| !!! | TTTAAGGGTTCTTTTTAGAA+AGG | - | tig0032425:13340-13359 | Msa1449050:intron | 25.0% |
| ! | AGATTTCTATGAATAGGTAT+AGG | - | tig0032425:13827-13846 | Msa1449050:intron | 25.0% |
| ! | ATAAGGAATAAAAACTAAGC+AGG | + | tig0032425:14142-14161 | None:intergenic | 25.0% |
| !! | ATTTGAGACATCTTAAGTAT+TGG | - | tig0032425:14216-14235 | Msa1449050:CDS | 25.0% |
| !!! | ATAAATTCTTTTTTTGGTGG+TGG | + | tig0032425:14408-14427 | None:intergenic | 25.0% |
| !!! | AAACTAGTTTTACTCTTACA+CGG | - | tig0032425:14458-14477 | Msa1449050:intron | 25.0% |
| !!! | CATACATAGTTTTGTTTTCT+AGG | + | tig0032425:14610-14629 | None:intergenic | 25.0% |
| ! | TCTTAAAAGGAAAAAAGTTG+GGG | + | tig0032425:14954-14973 | None:intergenic | 25.0% |
| ! | CATCTTAAAAGGAAAAAAGT+TGG | + | tig0032425:14956-14975 | None:intergenic | 25.0% |
| ! | AATTATTCTCAAACCAAACA+TGG | + | tig0032425:14984-15003 | None:intergenic | 25.0% |
| ! | TTGTAATCAAAAGCAAAAAC+AGG | + | tig0032425:15019-15038 | None:intergenic | 25.0% |
| !! | CGTGTGAATTTTGTAATTAA+AGG | - | tig0032425:15166-15185 | Msa1449050:CDS | 25.0% |
| ! | AAATAATGTAGAATGAGGAA+AGG | + | tig0032425:15242-15261 | None:intergenic | 25.0% |
| ! | ATGTCAAATAATGTAGAATG+AGG | + | tig0032425:15247-15266 | None:intergenic | 25.0% |
| ! | TTATATTTCCTATCAAAACC+AGG | - | tig0032425:15274-15293 | Msa1449050:CDS | 25.0% |
| ! | GAAAGAAAAATACAATGTAC+AGG | + | tig0032425:15619-15638 | None:intergenic | 25.0% |
| ATTGAATCCAAATTATGGGT+TGG | + | tig0032425:11051-11070 | None:intergenic | 30.0% | |
| !!! | TTAGAACGTGTTTTGATTTC+TGG | - | tig0032425:11276-11295 | Msa1449050:CDS | 30.0% |
| !!! | TAGAACGTGTTTTGATTTCT+GGG | - | tig0032425:11277-11296 | Msa1449050:CDS | 30.0% |
| !!! | CTAGATTTTGAGTTTTGAGA+AGG | - | tig0032425:11304-11323 | Msa1449050:CDS | 30.0% |
| AAGATTTGGATAGTAAAGCA+TGG | - | tig0032425:11363-11382 | Msa1449050:CDS | 30.0% | |
| GATACTTCTTAGAGATAATG+AGG | - | tig0032425:11634-11653 | Msa1449050:intron | 30.0% | |
| GTTGAAAATGTTGATCAAAG+AGG | - | tig0032425:11782-11801 | Msa1449050:intron | 30.0% | |
| TGGAGGGTAATAACTTATAA+TGG | + | tig0032425:12211-12230 | None:intergenic | 30.0% | |
| AAGTTATTACCCTCCAAATT+AGG | - | tig0032425:12215-12234 | Msa1449050:intron | 30.0% | |
| AAAAATTGTGGTCAGAATCA+TGG | - | tig0032425:12320-12339 | Msa1449050:intron | 30.0% | |
| ! | GGTTAATTGTGTTTTGTGAA+TGG | - | tig0032425:12341-12360 | Msa1449050:intron | 30.0% |
| !!! | TTGGTTTCACTAGCTTTTTT+GGG | - | tig0032425:12567-12586 | Msa1449050:intron | 30.0% |
| !! | TTTTGGGAGAAAAGTTTACT+TGG | - | tig0032425:12583-12602 | Msa1449050:intron | 30.0% |
| GGAACAATAATTGTAAGTCT+TGG | - | tig0032425:12639-12658 | Msa1449050:intron | 30.0% | |
| CTTGGTGAAATTGAGTATTA+GGG | + | tig0032425:12871-12890 | None:intergenic | 30.0% | |
| TAATACTCGTAAACCACTAT+AGG | - | tig0032425:13610-13629 | Msa1449050:intron | 30.0% | |
| AATACTCGTAAACCACTATA+GGG | - | tig0032425:13611-13630 | Msa1449050:intron | 30.0% | |
| GCAAATTTGATTATAGTTCC+TGG | - | tig0032425:13676-13695 | Msa1449050:intron | 30.0% | |
| ACCTTCAAAATGTTAAGCTT+CGG | - | tig0032425:13711-13730 | Msa1449050:intron | 30.0% | |
| TAGATTGAAACACAAGCAAA+AGG | - | tig0032425:13734-13753 | Msa1449050:intron | 30.0% | |
| ! | TTCTTCATATTTTGCTTGGA+TGG | - | tig0032425:13767-13786 | Msa1449050:intron | 30.0% |
| !! | ATGAATAGGTATAGCCTTAT+AGG | - | tig0032425:13866-13885 | Msa1449050:CDS | 30.0% |
| GTGATTTATGGTAACCTATA+AGG | + | tig0032425:13883-13902 | None:intergenic | 30.0% | |
| TGCTGCTAGAATTTAAGAAA+CGG | - | tig0032425:14004-14023 | Msa1449050:CDS | 30.0% | |
| TAGAATTTAAGAAACGGTTC+AGG | - | tig0032425:14010-14029 | Msa1449050:CDS | 30.0% | |
| AGAATTTAAGAAACGGTTCA+GGG | - | tig0032425:14011-14030 | Msa1449050:CDS | 30.0% | |
| GGAAAATCAAATCAGGAATA+AGG | + | tig0032425:14159-14178 | None:intergenic | 30.0% | |
| !! | TTCCTGATTTGATTTTCCAA+TGG | - | tig0032425:14161-14180 | Msa1449050:CDS | 30.0% |
| TTCCATTGGAAAATCAAATC+AGG | + | tig0032425:14166-14185 | None:intergenic | 30.0% | |
| AAGATGTATTCAGCTAATGA+TGG | + | tig0032425:14251-14270 | None:intergenic | 30.0% | |
| ATCATTAGCTGAATACATCT+TGG | - | tig0032425:14250-14269 | Msa1449050:intron | 30.0% | |
| !! | AAATTCTAAAATAAGGTGGG+TGG | + | tig0032425:14306-14325 | None:intergenic | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | tig0032425:14364-14383 | Msa1449050:intron | 30.0% | |
| !!! | AACTAGTTTTACTCTTACAC+GGG | - | tig0032425:14459-14478 | Msa1449050:intron | 30.0% |
| AGTTATAAACTGTGCTTAGT+TGG | - | tig0032425:14522-14541 | Msa1449050:intron | 30.0% | |
| GCAAAATCATGAGTTCTTAT+TGG | - | tig0032425:14544-14563 | Msa1449050:intron | 30.0% | |
| GATGCAAAGTTGTAAATATG+CGG | + | tig0032425:14868-14887 | None:intergenic | 30.0% | |
| !! | AAGAGTTGATATGACTTTCA+TGG | - | tig0032425:14909-14928 | Msa1449050:CDS | 30.0% |
| CCAAGATGAAAATAATGTGA+CGG | + | tig0032425:15044-15063 | None:intergenic | 30.0% | |
| AAAATACAATGTACAGGCTA+TGG | + | tig0032425:15613-15632 | None:intergenic | 30.0% | |
| TGGATGATTCAATTATGGGT+TGG | + | tig0032425:11031-11050 | None:intergenic | 35.0% | |
| GGGTTGGATGATTCAATTAT+GGG | + | tig0032425:11035-11054 | None:intergenic | 35.0% | |
| ! | TGGGTTGGATGATTCAATTA+TGG | + | tig0032425:11036-11055 | None:intergenic | 35.0% |
| GAATCATCCAACCCATAATT+TGG | - | tig0032425:11041-11060 | Msa1449050:three_prime_UTR | 35.0% | |
| ACCTGTCGGATAATCAAAAT+CGG | + | tig0032425:11128-11147 | None:intergenic | 35.0% | |
| GCTACAAAAGAGTCGTAAAT+TGG | + | tig0032425:11204-11223 | None:intergenic | 35.0% | |
| !!! | TGAGTTTTGAGAAGGGTTTT+TGG | - | tig0032425:11312-11331 | Msa1449050:CDS | 35.0% |
| !! | TATGGTGGGTTCAAAAGATT+TGG | - | tig0032425:11349-11368 | Msa1449050:CDS | 35.0% |
| TGGATAGTAAAGCATGGAAA+TGG | - | tig0032425:11369-11388 | Msa1449050:CDS | 35.0% | |
| GGATAGTAAAGCATGGAAAT+GGG | - | tig0032425:11370-11389 | Msa1449050:CDS | 35.0% | |
| GATAGTAAAGCATGGAAATG+GGG | - | tig0032425:11371-11390 | Msa1449050:CDS | 35.0% | |
| TTCCAATTGTTGAAATTGGG+AGG | - | tig0032425:11528-11547 | Msa1449050:intron | 35.0% | |
| TACCTCCCAATTTCAACAAT+TGG | + | tig0032425:11533-11552 | None:intergenic | 35.0% | |
| !! | TGTTGAAATTGGGAGGTATT+TGG | - | tig0032425:11535-11554 | Msa1449050:intron | 35.0% |
| AGGTATTTGGAGGATTCTTA+TGG | - | tig0032425:11548-11567 | Msa1449050:intron | 35.0% | |
| GTGATAAGAGTTTAAAAGGG+AGG | - | tig0032425:11591-11610 | Msa1449050:intron | 35.0% | |
| AAGAGTTTAAAAGGGAGGTT+AGG | - | tig0032425:11596-11615 | Msa1449050:intron | 35.0% | |
| AGAGTTTAAAAGGGAGGTTA+GGG | - | tig0032425:11597-11616 | Msa1449050:intron | 35.0% | |
| GGGATTATTGATAGGAATGA+TGG | - | tig0032425:11701-11720 | Msa1449050:intron | 35.0% | |
| AAATGTTGATCAAAGAGGGT+TGG | - | tig0032425:11787-11806 | Msa1449050:intron | 35.0% | |
| ! | GTTTATTGATATGCCCGTTT+TGG | - | tig0032425:11852-11871 | Msa1449050:intron | 35.0% |
| AGTTGAGCGAAAAACCAAAA+CGG | + | tig0032425:11869-11888 | None:intergenic | 35.0% | |
| CTTGAAGTATACTACAGTCA+CGG | - | tig0032425:11904-11923 | Msa1449050:intron | 35.0% | |
| GTTAACGTCATTCGAGTATA+TGG | - | tig0032425:12053-12072 | Msa1449050:intron | 35.0% | |
| GTTAGTGACGTTCAAAATTG+TGG | + | tig0032425:12155-12174 | None:intergenic | 35.0% | |
| ! | ATCCAGTCTTTTTACCTTCT+TGG | - | tig0032425:12548-12567 | Msa1449050:intron | 35.0% |
| AACCAAGAAGGTAAAAAGAC+TGG | + | tig0032425:12553-12572 | None:intergenic | 35.0% | |
| AAAAGCTAGTGAAACCAAGA+AGG | + | tig0032425:12565-12584 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTCACTAGCTTTTT+TGG | - | tig0032425:12566-12585 | Msa1449050:intron | 35.0% |
| TTTAGTGTTCTTCTCTGCAT+GGG | - | tig0032425:12615-12634 | Msa1449050:intron | 35.0% | |
| ! | CATTTTTGCACTTTCTTCAG+CGG | - | tig0032425:12713-12732 | Msa1449050:intron | 35.0% |
| ! | ATTTTTGCACTTTCTTCAGC+GGG | - | tig0032425:12714-12733 | Msa1449050:intron | 35.0% |
| !! | AATGACGATGATGGAAAGAA+TGG | - | tig0032425:12777-12796 | Msa1449050:intron | 35.0% |
| AAAGAATGGTGAAGCTAGTA+TGG | - | tig0032425:12791-12810 | Msa1449050:intron | 35.0% | |
| AAATTGAGTATTAGGGCAAC+TGG | + | tig0032425:12864-12883 | None:intergenic | 35.0% | |
| CCTTGGTGAAATTGAGTATT+AGG | + | tig0032425:12872-12891 | None:intergenic | 35.0% | |
| CCTAATACTCAATTTCACCA+AGG | - | tig0032425:12869-12888 | Msa1449050:intron | 35.0% | |
| !! | TTCTTTGGAGTTTGATGAAG+TGG | - | tig0032425:12971-12990 | Msa1449050:intron | 35.0% |
| ! | ATAATCGAAGCCTTTTACCA+GGG | + | tig0032425:13170-13189 | None:intergenic | 35.0% |
| ! | AATAATCGAAGCCTTTTACC+AGG | + | tig0032425:13171-13190 | None:intergenic | 35.0% |
| ACCAAGAGTAAAGGGTAAAT+GGG | + | tig0032425:13226-13245 | None:intergenic | 35.0% | |
| TGCAAATATGAGCATTCTCT+TGG | - | tig0032425:13270-13289 | Msa1449050:intron | 35.0% | |
| !! | CTCCTTTAAGGGTTCTTTTT+AGG | - | tig0032425:13303-13322 | Msa1449050:intron | 35.0% |
| GTCCTAAAAAGAACCCTTAA+AGG | + | tig0032425:13308-13327 | None:intergenic | 35.0% | |
| !!! | GGTTCTTTTTAGGACGAATT+TGG | - | tig0032425:13313-13332 | Msa1449050:intron | 35.0% |
| TAAAGTGGAATTCGCTTTAG+AGG | + | tig0032425:13500-13519 | None:intergenic | 35.0% | |
| AAAGCGAATTCCACTTTAGA+AGG | - | tig0032425:13502-13521 | Msa1449050:intron | 35.0% | |
| ! | AGATTTGTCTCCTTCTAAAG+TGG | + | tig0032425:13515-13534 | None:intergenic | 35.0% |
| ! | ACCGAAGCTTAACATTTTGA+AGG | + | tig0032425:13715-13734 | None:intergenic | 35.0% |
| TTTGCTTGGATGGTAATAAG+AGG | - | tig0032425:13777-13796 | Msa1449050:intron | 35.0% | |
| GAATTTAAGAAACGGTTCAG+GGG | - | tig0032425:14012-14031 | Msa1449050:CDS | 35.0% | |
| TTCCATCTGTTATGAGATCT+GGG | - | tig0032425:14051-14070 | Msa1449050:CDS | 35.0% | |
| !! | CATCTTAAGTATTGGTCAAG+AGG | - | tig0032425:14224-14243 | Msa1449050:CDS | 35.0% |
| ATTAGCTGAATACATCTTGG+CGG | - | tig0032425:14253-14272 | Msa1449050:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | - | tig0032425:14369-14388 | Msa1449050:intron | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | - | tig0032425:14370-14389 | Msa1449050:intron | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | - | tig0032425:14371-14390 | Msa1449050:intron | 35.0% | |
| CACAACATGGTACTAACAAT+TGG | + | tig0032425:14707-14726 | None:intergenic | 35.0% | |
| CAACAAAGATTTGCACAACA+TGG | + | tig0032425:14720-14739 | None:intergenic | 35.0% | |
| CATGTTGTGCAAATCTTTGT+TGG | - | tig0032425:14718-14737 | Msa1449050:intron | 35.0% | |
| TACAACTTTGCATCTGTACA+TGG | - | tig0032425:14874-14893 | Msa1449050:CDS | 35.0% | |
| ACATGGTGAGTCATCTTAAA+AGG | + | tig0032425:14967-14986 | None:intergenic | 35.0% | |
| TTAAGATGACTCACCATGTT+TGG | - | tig0032425:14968-14987 | Msa1449050:CDS | 35.0% | |
| ! | CCGTCACATTATTTTCATCT+TGG | - | tig0032425:15041-15060 | Msa1449050:CDS | 35.0% |
| ! | GAAAGGATACGTGGATTAAA+GGG | + | tig0032425:15225-15244 | None:intergenic | 35.0% |
| ATGTGCTGAGTGATTACTTA+TGG | - | tig0032425:15308-15327 | Msa1449050:CDS | 35.0% | |
| TGTGCTGAGTGATTACTTAT+GGG | - | tig0032425:15309-15328 | Msa1449050:CDS | 35.0% | |
| CTTTGCTGGAATCAATATTC+CGG | - | tig0032425:15474-15493 | Msa1449050:five_prime_UTR | 35.0% | |
| !! | GATTTGCTAAAAGTTTCGAC+CGG | + | tig0032425:15496-15515 | None:intergenic | 35.0% |
| CAGTGAAGAATAAGAACTAG+AGG | - | tig0032425:15737-15756 | Msa1449050:five_prime_UTR | 35.0% | |
| TGTCGGATAATCAAAATCGG+TGG | + | tig0032425:11125-11144 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATTATCCGAC+AGG | - | tig0032425:11124-11143 | Msa1449050:three_prime_UTR | 40.0% |
| !! | ACGACTCTTTTGTAGCTTGT+AGG | - | tig0032425:11208-11227 | Msa1449050:CDS | 40.0% |
| AAAGCATGGAAATGGGGTTT+AGG | - | tig0032425:11377-11396 | Msa1449050:CDS | 40.0% | |
| !! | TGAAATTGGGAGGTATTTGG+AGG | - | tig0032425:11538-11557 | Msa1449050:intron | 40.0% |
| GAGTTTAAAAGGGAGGTTAG+GGG | - | tig0032425:11598-11617 | Msa1449050:intron | 40.0% | |
| TTGGTTATTGATGAGGTGGA+TGG | - | tig0032425:11680-11699 | Msa1449050:intron | 40.0% | |
| TGGTTATTGATGAGGTGGAT+GGG | - | tig0032425:11681-11700 | Msa1449050:intron | 40.0% | |
| AGGTGGATGGGATTATTGAT+AGG | - | tig0032425:11693-11712 | Msa1449050:intron | 40.0% | |
| AAAGAGGGTTGGATGAGAAA+GGG | - | tig0032425:11798-11817 | Msa1449050:intron | 40.0% | |
| GTTGAGCGAAAAACCAAAAC+GGG | + | tig0032425:11868-11887 | None:intergenic | 40.0% | |
| CGTGACTGTAGTATACTTCA+AGG | + | tig0032425:11906-11925 | None:intergenic | 40.0% | |
| CGTCACTAACCATGATTTCT+AGG | - | tig0032425:12165-12184 | Msa1449050:intron | 40.0% | |
| CTTTAGTGTTCTTCTCTGCA+TGG | - | tig0032425:12614-12633 | Msa1449050:intron | 40.0% | |
| ! | AGTCTTGGTGATTCACAATC+TGG | - | tig0032425:12654-12673 | Msa1449050:intron | 40.0% |
| GCAAAAATGTCTCCAAGAAG+AGG | + | tig0032425:12702-12721 | None:intergenic | 40.0% | |
| GCGAATAAGGGTGATATACA+CGG | + | tig0032425:12748-12767 | None:intergenic | 40.0% | |
| GCTCAGTTTCTTGGATTTCT+GGG | - | tig0032425:12813-12832 | Msa1449050:intron | 40.0% | |
| CTCAGTTTCTTGGATTTCTG+GGG | - | tig0032425:12814-12833 | Msa1449050:intron | 40.0% | |
| CATATAAAAAGGTTCGGCCT+TGG | + | tig0032425:12889-12908 | None:intergenic | 40.0% | |
| AAGCAGCTTGGTCTGATTAT+TGG | - | tig0032425:12918-12937 | Msa1449050:intron | 40.0% | |
| CTTGGTCTGATTATTGGCAA+AGG | - | tig0032425:12924-12943 | Msa1449050:intron | 40.0% | |
| TCCCATTTACCCTTTACTCT+TGG | - | tig0032425:13222-13241 | Msa1449050:intron | 40.0% | |
| CACCAAGAGTAAAGGGTAAA+TGG | + | tig0032425:13227-13246 | None:intergenic | 40.0% | |
| AGCATTCTCTTGGACGAATT+TGG | - | tig0032425:13280-13299 | Msa1449050:intron | 40.0% | |
| ! | GACGAATTTGGCTCCTTTAA+GGG | - | tig0032425:13292-13311 | Msa1449050:intron | 40.0% |
| ! | GACGAATTTGGCTCCTTTAA+GGG | - | tig0032425:13292-13311 | Msa1449050:intron | 40.0% |
| GACAAATCTCGTTTAGACCT+TGG | - | tig0032425:13526-13545 | Msa1449050:intron | 40.0% | |
| AACCACTATAGGGTTGACAT+TGG | - | tig0032425:13621-13640 | Msa1449050:intron | 40.0% | |
| AACCAATGTCAACCCTATAG+TGG | + | tig0032425:13626-13645 | None:intergenic | 40.0% | |
| GAAGGTAAAAAGTTTGCACC+AGG | + | tig0032425:13697-13716 | None:intergenic | 40.0% | |
| AGCTTCATACCATTTCGCTT+TGG | - | tig0032425:13927-13946 | Msa1449050:CDS | 40.0% | |
| GTTCCATCTGTTATGAGATC+TGG | - | tig0032425:14050-14069 | Msa1449050:CDS | 40.0% | |
| TTCCCAGATCTCATAACAGA+TGG | + | tig0032425:14056-14075 | None:intergenic | 40.0% | |
| ATCTGTTATGAGATCTGGGA+AGG | - | tig0032425:14055-14074 | Msa1449050:CDS | 40.0% | |
| TCTGTTATGAGATCTGGGAA+GGG | - | tig0032425:14056-14075 | Msa1449050:CDS | 40.0% | |
| !! | ACACATGAGAAGTGTTCCAT+TGG | + | tig0032425:14180-14199 | None:intergenic | 40.0% |
| TTAGCTGAATACATCTTGGC+GGG | - | tig0032425:14254-14273 | Msa1449050:intron | 40.0% | |
| !!! | ATTCTTTTTTTGGTGGTGGC+CGG | + | tig0032425:14404-14423 | None:intergenic | 40.0% |
| ! | GGAAAGGATACGTGGATTAA+AGG | + | tig0032425:15226-15245 | None:intergenic | 40.0% |
| TAGAATGAGGAAAGGATACG+TGG | + | tig0032425:15234-15253 | None:intergenic | 40.0% | |
| TGATGTTAGAAGAACAGCCT+TGG | + | tig0032425:15335-15354 | None:intergenic | 40.0% | |
| ACTCACAATTCAAGTCCCAT+TGG | - | tig0032425:15375-15394 | Msa1449050:CDS | 40.0% | |
| ATCAACAGAAACTACTGCTG+TGG | - | tig0032425:15513-15532 | Msa1449050:five_prime_UTR | 40.0% | |
| ACACAGTACGATGTACCTGT+CGG | + | tig0032425:11142-11161 | None:intergenic | 45.0% | |
| GTGCAATCTGTTGTAGATGC+CGG | - | tig0032425:11452-11471 | Msa1449050:CDS | 45.0% | |
| CTTAGAGATAATGAGGCGAG+CGG | - | tig0032425:11641-11660 | Msa1449050:intron | 45.0% | |
| ! | GGAGTCGTTGGTTATTGATG+AGG | - | tig0032425:11673-11692 | Msa1449050:intron | 45.0% |
| ! | GTCGTTGGTTATTGATGAGG+TGG | - | tig0032425:11676-11695 | Msa1449050:intron | 45.0% |
| !! | TGGTTCTGAATTGCTGCCTT+CGG | - | tig0032425:11721-11740 | Msa1449050:intron | 45.0% |
| GGATGATGTAGTTGGAGGAT+TGG | - | tig0032425:11742-11761 | Msa1449050:intron | 45.0% | |
| ! | GATGTAGTTGGAGGATTGGT+TGG | - | tig0032425:11746-11765 | Msa1449050:intron | 45.0% |
| !! | TAGTTGGAGGATTGGTTGGT+CGG | - | tig0032425:11750-11769 | Msa1449050:intron | 45.0% |
| CAAAGAGGGTTGGATGAGAA+AGG | - | tig0032425:11797-11816 | Msa1449050:intron | 45.0% | |
| ACAGTCACGGTGAGTGAATT+TGG | - | tig0032425:11917-11936 | Msa1449050:intron | 45.0% | |
| GTTGCCTCAAATCCTCTTCT+TGG | - | tig0032425:12687-12706 | Msa1449050:intron | 45.0% | |
| GTCTCCAAGAAGAGGATTTG+AGG | + | tig0032425:12694-12713 | None:intergenic | 45.0% | |
| GCTAGTATGGCTCAGTTTCT+TGG | - | tig0032425:12804-12823 | Msa1449050:intron | 45.0% | |
| GGCTCAGTTTCTTGGATTTC+TGG | - | tig0032425:12812-12831 | Msa1449050:intron | 45.0% | |
| ATGCTTACTTGGAAGCAGCT+TGG | - | tig0032425:12906-12925 | Msa1449050:intron | 45.0% | |
| ! | GGACGAATTTGGCTCCTTTA+AGG | - | tig0032425:13291-13310 | Msa1449050:intron | 45.0% |
| ! | GGACGAATTTGGCTCCTTTA+AGG | - | tig0032425:13291-13310 | Msa1449050:intron | 45.0% |
| AGAAGGCTACCAAAGCGAAA+TGG | + | tig0032425:13939-13958 | None:intergenic | 45.0% | |
| !!! | TTCTTTTTTTGGTGGTGGCC+GGG | + | tig0032425:14403-14422 | None:intergenic | 45.0% |
| TGACGTTCTTAGTGAGAAGC+TGG | - | tig0032425:14644-14663 | Msa1449050:intron | 45.0% | |
| !!! | CCAGCAATCCTGGTTTTGAT+AGG | + | tig0032425:15285-15304 | None:intergenic | 45.0% |
| CCTATCAAAACCAGGATTGC+TGG | - | tig0032425:15282-15301 | Msa1449050:CDS | 45.0% | |
| GAGTGATTACTTATGGGCCA+AGG | - | tig0032425:15315-15334 | Msa1449050:CDS | 45.0% | |
| TATCGACAATGGCAGCCAAT+GGG | + | tig0032425:15393-15412 | None:intergenic | 45.0% | |
| !! | TCCAGTGATGGTATCGACAA+TGG | + | tig0032425:15404-15423 | None:intergenic | 45.0% |
| GGAGCAATAGCTGTCATGAT+CGG | - | tig0032425:15451-15470 | Msa1449050:five_prime_UTR | 45.0% | |
| GCAGCTGAATCTTGTGTTCT+TGG | + | tig0032425:15586-15605 | None:intergenic | 45.0% | |
| !!! | ATTATTTTTTGTTTTTTTAT+TGG | - | tig0032425:14753-14772 | Msa1449050:intron | 5.0% |
| AACAAGAAACGGCGAGACAC+CGG | + | tig0032425:11474-11493 | None:intergenic | 50.0% | |
| CTGCCTTCGGATGATGTAGT+TGG | - | tig0032425:11734-11753 | Msa1449050:intron | 50.0% | |
| CCTCCAACTACATCATCCGA+AGG | + | tig0032425:11740-11759 | None:intergenic | 50.0% | |
| CCTTCGGATGATGTAGTTGG+AGG | - | tig0032425:11737-11756 | Msa1449050:intron | 50.0% | |
| !! | AGTTGGAGGATTGGTTGGTC+GGG | - | tig0032425:11751-11770 | Msa1449050:intron | 50.0% |
| !! | ATTGGTTGGTCGGGTTGGTT+TGG | - | tig0032425:11760-11779 | Msa1449050:intron | 50.0% |
| AGTGTTCTTCTCTGCATGGG+AGG | - | tig0032425:12618-12637 | Msa1449050:intron | 50.0% | |
| TCCAACCCAACCCTGGTAAA+AGG | - | tig0032425:13157-13176 | Msa1449050:intron | 50.0% | |
| ! | CGAAGCCTTTTACCAGGGTT+GGG | + | tig0032425:13165-13184 | None:intergenic | 50.0% |
| ! | TCGAAGCCTTTTACCAGGGT+TGG | + | tig0032425:13166-13185 | None:intergenic | 50.0% |
| GGGCATGCACCAAGAGTAAA+GGG | + | tig0032425:13234-13253 | None:intergenic | 50.0% | |
| AGGGCATGCACCAAGAGTAA+AGG | + | tig0032425:13235-13254 | None:intergenic | 50.0% | |
| TCGCTAAAGCTGCTACTCAC+AGG | + | tig0032425:13586-13605 | None:intergenic | 50.0% | |
| CAGCAGTCAACCAAGTCACA+GGG | + | tig0032425:13989-14008 | None:intergenic | 50.0% | |
| ACAGATGGAACCTCGTGACT+AGG | + | tig0032425:14041-14060 | None:intergenic | 50.0% | |
| AAGTCCTCGTGAGCTTAGCT+CGG | - | tig0032425:14333-14352 | Msa1449050:intron | 50.0% | |
| ! | TGAGCTTAGCTCGGTTGGTA+TGG | - | tig0032425:14342-14361 | Msa1449050:intron | 50.0% |
| AGCACATTGTCCAGCAATCC+TGG | + | tig0032425:15295-15314 | None:intergenic | 50.0% | |
| TCAACCACAGTAGCTACAGC+TGG | - | tig0032425:15352-15371 | Msa1449050:CDS | 50.0% | |
| ! | GTATCGACAATGGCAGCCAA+TGG | + | tig0032425:15394-15413 | None:intergenic | 50.0% |
| GCCATTGTCGATACCATCAC+TGG | - | tig0032425:15400-15419 | Msa1449050:CDS | 50.0% | |
| TGGACATTCTCCTCCCTTCA+TGG | - | tig0032425:15420-15439 | Msa1449050:exon | 50.0% | |
| ! | CCTCCCTTCATGGATTACCT+CGG | - | tig0032425:15430-15449 | Msa1449050:exon | 50.0% |
| GCTCCGAGGTAATCCATGAA+GGG | + | tig0032425:15436-15455 | None:intergenic | 50.0% | |
| TGCTCCGAGGTAATCCATGA+AGG | + | tig0032425:15437-15456 | None:intergenic | 50.0% | |
| TCATGACAGCTATTGCTCCG+AGG | + | tig0032425:15450-15469 | None:intergenic | 50.0% | |
| ! | GGTTGGATGAGAAAGGGCGT+TGG | - | tig0032425:11804-11823 | Msa1449050:intron | 55.0% |
| CTATGCATCCAACCCAACCC+TGG | - | tig0032425:13150-13169 | Msa1449050:intron | 55.0% | |
| ! | GCCTTTTACCAGGGTTGGGT+TGG | + | tig0032425:13161-13180 | None:intergenic | 55.0% |
| GTCAACCAAGTCACAGGGTG+CGG | + | tig0032425:13984-14003 | None:intergenic | 55.0% | |
| GCAGCAGTCAACCAAGTCAC+AGG | + | tig0032425:13990-14009 | None:intergenic | 55.0% | |
| GAGTCCAGCTGTAGCTACTG+TGG | + | tig0032425:15359-15378 | None:intergenic | 55.0% | |
| GGGAGGAGAATGTCCAGTGA+TGG | + | tig0032425:15416-15435 | None:intergenic | 55.0% | |
| CCGAGGTAATCCATGAAGGG+AGG | + | tig0032425:15433-15452 | None:intergenic | 55.0% | |
| ! | GCTGTCATGATCGGCTTTGC+TGG | - | tig0032425:15460-15479 | Msa1449050:five_prime_UTR | 55.0% |
| GAGGTTAGGGGAGTCAGAGC+AGG | - | tig0032425:11610-11629 | Msa1449050:intron | 60.0% | |
| CGGTGAAGCTGTGGAGTCGT+TGG | - | tig0032425:11661-11680 | Msa1449050:intron | 60.0% | |
| !! | GGAGGATTGGTTGGTCGGGT+TGG | - | tig0032425:11755-11774 | Msa1449050:intron | 60.0% |
| CACTTCCGCACCCTGTGACT+TGG | - | tig0032425:13976-13995 | Msa1449050:CDS | 60.0% | |
| TCAGGGGTAGCCTAGTCACG+AGG | - | tig0032425:14028-14047 | Msa1449050:CDS | 60.0% | |
| CCAACCGAGCTAAGCTCACG+AGG | + | tig0032425:14340-14359 | None:intergenic | 60.0% | |
| CCTCGTGAGCTTAGCTCGGT+TGG | - | tig0032425:14337-14356 | Msa1449050:intron | 60.0% | |
| ! | CAAGGTCTGGGGTTCGAACC+CGG | - | tig0032425:14382-14401 | Msa1449050:intron | 60.0% |
| TGAGGCGAGCGGTGAAGCTG+TGG | - | tig0032425:11652-11671 | Msa1449050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032425 | gene | 11000 | 15787 | 11000 | ID=Msa1449050;Name=Msa1449050 |
| tig0032425 | mRNA | 11000 | 15787 | 11000 | ID=Msa1449050-mRNA-1;Parent=Msa1449050;Name=Msa1449050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=350|1|1|1|1|1|3|172|438 |
| tig0032425 | exon | 11000 | 11491 | 11000 | ID=Msa1449050-mRNA-1:exon:16757;Parent=Msa1449050-mRNA-1 |
| tig0032425 | exon | 13842 | 14262 | 13842 | ID=Msa1449050-mRNA-1:exon:16756;Parent=Msa1449050-mRNA-1 |
| tig0032425 | exon | 14862 | 15787 | 14862 | ID=Msa1449050-mRNA-1:exon:16755;Parent=Msa1449050-mRNA-1 |
| tig0032425 | five_prime_UTR | 15438 | 15787 | 15438 | ID=Msa1449050-mRNA-1:five_prime_utr;Parent=Msa1449050-mRNA-1 |
| tig0032425 | CDS | 14862 | 15437 | 14862 | ID=Msa1449050-mRNA-1:cds;Parent=Msa1449050-mRNA-1 |
| tig0032425 | CDS | 13842 | 14262 | 13842 | ID=Msa1449050-mRNA-1:cds;Parent=Msa1449050-mRNA-1 |
| tig0032425 | CDS | 11172 | 11491 | 11172 | ID=Msa1449050-mRNA-1:cds;Parent=Msa1449050-mRNA-1 |
| tig0032425 | three_prime_UTR | 11000 | 11171 | 11000 | ID=Msa1449050-mRNA-1:three_prime_utr;Parent=Msa1449050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
