AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1280620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280620 MtrunA17_Chr8g0350831 91.451 386 5 1 1 386 1 358 0.0 716
Msa1280620 MtrunA17_Chr1g0199481 31.034 348 177 12 21 336 82 398 3.69e-40 147
Msa1280620 MtrunA17_Chr4g0028631 29.787 329 199 10 21 335 62 372 5.95e-38 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280620 AT1G01910.1 76.393 377 61 1 6 382 5 353 0.0 567
Msa1280620 AT1G01910.4 76.393 377 61 1 6 382 5 353 0.0 567
Msa1280620 AT1G01910.2 76.393 377 61 1 6 382 5 353 0.0 567
Msa1280620 AT1G01910.3 78.704 324 41 1 6 329 5 300 3.47e-180 503
Msa1280620 AT1G01910.5 80.973 226 43 0 157 382 24 249 6.42e-136 388
Msa1280620 AT3G10350.1 30.259 347 180 11 21 336 88 403 5.94e-40 147
Msa1280620 AT3G10350.2 31.269 323 199 9 21 336 119 425 2.41e-39 145
Msa1280620 AT5G60730.1 30.030 333 175 9 32 336 81 383 1.89e-29 117

Find 86 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCTTTGAAGAATAAATT+TGG 0.178410 8_3:+19286897 Msa1280620:CDS
ACCAACGAAAACCCACTTTA+AGG 0.186644 8_3:-19283475 None:intergenic
AAAACCCCTACTTTGGTTAA+TGG 0.187000 8_3:+19283633 Msa1280620:CDS
GTCATTACTGTATTCTCTTT+TGG 0.213574 8_3:+19288949 Msa1280620:three_prime_UTR
TACAGTTGAGCATGAGGATA+TGG 0.246895 8_3:+19284231 Msa1280620:CDS
TTTCAACTTTCCAAGTTAAA+AGG 0.249024 8_3:+19289165 Msa1280620:three_prime_UTR
GAAAATGCAGCAGAAGTATT+TGG 0.259754 8_3:+19288069 Msa1280620:CDS
ATGGGAATTGCAAGAGTCTA+AGG 0.284089 8_3:-19286845 None:intergenic
TTTGGCATGGGTGATGATTT+TGG 0.286567 8_3:+19287528 Msa1280620:CDS
ACTTTAAGGTTTCTTGTTCT+AGG 0.289287 8_3:-19283461 None:intergenic
TGTCTTTGAAGAATAAATTT+GGG 0.291371 8_3:+19286898 Msa1280620:CDS
AAAAGAGGCAGAAGAAGAAT+TGG 0.294022 8_3:+19288870 Msa1280620:CDS
TTAGGCTTGAGGTTTGAATT+TGG 0.295378 8_3:-19283306 None:intergenic
GGATTTAATATAAGAAGATT+TGG 0.303790 8_3:+19283217 Msa1280620:five_prime_UTR
CATTCTTGCTTTAAGTAACT+TGG 0.319005 8_3:-19288047 None:intergenic
GAGCTAGCTGGTGCAATTCC+TGG 0.328730 8_3:+19284286 Msa1280620:CDS
TGTAATGTTCCTTCTGGTAA+TGG 0.356987 8_3:-19283432 None:intergenic
TTCATAAAGCGAGAGGAATT+CGG 0.357721 8_3:-19287849 None:intergenic
TCATAAAGCGAGAGGAATTC+GGG 0.385422 8_3:-19287848 None:intergenic
ACTCATAAACTGAAAGTTGC+AGG 0.390809 8_3:-19289108 None:intergenic
CATCATACAACATGTAAAAC+TGG 0.392796 8_3:-19288093 None:intergenic
CTCATAGCCTCATCAATTCC+AGG 0.396145 8_3:-19284304 None:intergenic
AGTGCAAATTGACAGGTTAC+TGG 0.397669 8_3:+19288733 Msa1280620:intron
TCACAGATGACTCGCATGTT+TGG 0.400073 8_3:+19287510 Msa1280620:intron
TACTTGATCTCTACTGCATA+TGG 0.414553 8_3:-19288806 None:intergenic
GCTTTATGAAACAGAAAGAT+TGG 0.417282 8_3:+19287862 Msa1280620:CDS
GCAATCCTTGGGAAGCTAGA+AGG 0.429425 8_3:+19287558 Msa1280620:CDS
TGGTGAGCGTAACACTGTTA+TGG 0.430438 8_3:+19285344 Msa1280620:CDS
GCTTTATTTGTTTAGGCTTG+AGG 0.438599 8_3:-19283317 None:intergenic
TAGAACAAGAAACCTTAAAG+TGG 0.452112 8_3:+19283463 Msa1280620:CDS
ACAAACCATGGCATAGAGAT+TGG 0.454098 8_3:-19283661 None:intergenic
CTTTCCAAGTTAAAAGGTAA+AGG 0.476052 8_3:+19289171 Msa1280620:three_prime_UTR
GAGAAACCATTAACCAAAGT+AGG 0.484214 8_3:-19283639 None:intergenic
TTTGGTGAAGATGCAATCCT+TGG 0.487877 8_3:+19287546 Msa1280620:CDS
GCAACTTTCAGTTTATGAGT+TGG 0.493480 8_3:+19289111 Msa1280620:three_prime_UTR
GAATTGGAGAGAGTCAAAAC+GGG 0.494143 8_3:+19288886 Msa1280620:CDS
AGAAACCATTAACCAAAGTA+GGG 0.499369 8_3:-19283638 None:intergenic
ACAAAACAACTTACCTCTTG+TGG 0.500305 8_3:-19288145 None:intergenic
ACAGTTGAGCATGAGGATAT+GGG 0.500666 8_3:+19284232 Msa1280620:CDS
AGAATTGGAGAGAGTCAAAA+CGG 0.501866 8_3:+19288885 Msa1280620:CDS
CAACGTTGTTGCTATTGCTA+TGG 0.502103 8_3:+19283401 Msa1280620:exon
CAAGTTATCTTCGACGATGA+AGG 0.502112 8_3:+19287935 Msa1280620:CDS
GAGGATATGGGTAGTTCTGA+TGG 0.502699 8_3:+19284244 Msa1280620:CDS
TATGGGTAGTTCTGATGGGA+TGG 0.510623 8_3:+19284249 Msa1280620:CDS
TTTCTCCAATCTCTATGCCA+TGG 0.510985 8_3:+19283656 Msa1280620:CDS
TCATTCCTTCTAGCTTCCCA+AGG 0.518353 8_3:-19287563 None:intergenic
TGCTGCGGCAGAGCGATTCA+AGG 0.531230 8_3:+19285288 Msa1280620:intron
TTTCAGATTGGTGCAGACAA+TGG 0.535803 8_3:+19286779 Msa1280620:intron
GTATTTGATACTGCTCCCAC+TGG 0.540064 8_3:+19286816 Msa1280620:CDS
TTGGTGAAGATGCAATCCTT+GGG 0.541753 8_3:+19287547 Msa1280620:CDS
GTTGGTGGCAAAGGTGGTGT+TGG 0.544218 8_3:+19283492 Msa1280620:CDS
ATTGCAAGAGTCTAAGGGTA+TGG 0.549459 8_3:-19286839 None:intergenic
TTTAGAAAAGGGTCTTGCAA+AGG 0.554997 8_3:+19286872 Msa1280620:CDS
AGTCTAAGGGTATGGCCAGT+GGG 0.561604 8_3:-19286831 None:intergenic
TGGGAAGCTAGAAGGAATGA+AGG 0.562365 8_3:+19287566 Msa1280620:CDS
GCTGCCACTGCTTCCACAAG+AGG 0.562957 8_3:+19288132 Msa1280620:CDS
GTCTTTGAAGAATAAATTTG+GGG 0.567862 8_3:+19286899 Msa1280620:CDS
AATTTGTTCAATGAGCTAGC+TGG 0.584569 8_3:+19284274 Msa1280620:CDS
CGAGTAACTGTGTTGCAGAA+TGG 0.585061 8_3:+19285324 Msa1280620:CDS
AGAACAAGAAACCTTAAAGT+GGG 0.586075 8_3:+19283464 Msa1280620:CDS
GCATCGCTAAGATTATGAGC+AGG 0.586661 8_3:-19283591 None:intergenic
ATATCCTCATGCTCAACTGT+AGG 0.592291 8_3:-19284229 None:intergenic
GAGTCTAAGGGTATGGCCAG+TGG 0.594672 8_3:-19286832 None:intergenic
TTTCTGTTTCATAAAGCGAG+AGG 0.594935 8_3:-19287856 None:intergenic
AGTCAAAACGGGGAAGAACA+AGG 0.596263 8_3:+19288897 Msa1280620:CDS
GATGACTCGCATGTTTGGCA+TGG 0.600222 8_3:+19287515 Msa1280620:intron
GCTAAGATTATGAGCAGGAT+CGG 0.605307 8_3:-19283586 None:intergenic
ATCGGTTGAGATAATGAGAA+CGG 0.607262 8_3:-19283568 None:intergenic
GGATCCTACAGTTGAGCATG+AGG 0.607923 8_3:+19284225 Msa1280620:CDS
TGGGAATTGCAAGAGTCTAA+GGG 0.615708 8_3:-19286844 None:intergenic
AGGATATGGGTAGTTCTGAT+GGG 0.617467 8_3:+19284245 Msa1280620:CDS
GCTACAACACCAGTTAAAAG+AGG 0.619245 8_3:+19288855 Msa1280620:CDS
GAAACCATTAACCAAAGTAG+GGG 0.628988 8_3:-19283637 None:intergenic
CTACTGCATATGGATTCATA+CGG 0.629456 8_3:-19288796 None:intergenic
CTTACCTCTTGTGGAAGCAG+TGG 0.634536 8_3:-19288136 None:intergenic
GCGGTTAGAGAATAGAGTAA+CGG 0.642769 8_3:+19288831 Msa1280620:CDS
GGGAATGCAAACACAGACAA+AGG 0.643109 8_3:-19287828 None:intergenic
ATGACTCGCATGTTTGGCAT+GGG 0.644788 8_3:+19287516 Msa1280620:CDS
GTTAAAAGGTAAAGGTGACA+TGG 0.646767 8_3:+19289179 Msa1280620:three_prime_UTR
GAAGATCAACCATTACCAGA+AGG 0.651887 8_3:+19283423 Msa1280620:CDS
TGCAATTCCTGGAATTGATG+AGG 0.657803 8_3:+19284297 Msa1280620:CDS
AGCGATTCAAGGTACTGCGG+CGG 0.668628 8_3:+19285299 Msa1280620:CDS
TCTTTGAAGAATAAATTTGG+GGG 0.677618 8_3:+19286900 Msa1280620:CDS
GCAGTAGAGATCAAGTAGAG+CGG 0.707129 8_3:+19288812 Msa1280620:CDS
CAGAGCGATTCAAGGTACTG+CGG 0.716951 8_3:+19285296 Msa1280620:intron
AATTGGAGAGAGTCAAAACG+GGG 0.766641 8_3:+19288887 Msa1280620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAAAAATTAACAAAA+GGG - chr8_3:19283775-19283794 None:intergenic 10.0%
!! AAAAATCAAAAATTAACAAA+AGG - chr8_3:19283776-19283795 None:intergenic 10.0%
!! ATTCATAAAAAAAATAAAAG+GGG - chr8_3:19283845-19283864 None:intergenic 10.0%
!! GATTCATAAAAAAAATAAAA+GGG - chr8_3:19283846-19283865 None:intergenic 10.0%
!! AGATTCATAAAAAAAATAAA+AGG - chr8_3:19283847-19283866 None:intergenic 10.0%
!! TTCATAAAAACAAAATAAAA+GGG - chr8_3:19283949-19283968 None:intergenic 10.0%
!! ATTCATAAAAACAAAATAAA+AGG - chr8_3:19283950-19283969 None:intergenic 10.0%
!!! TAACTTAATTTTATATAAAG+GGG + chr8_3:19285168-19285187 Msa1280620:intron 10.0%
!!! TTCATTTTTTATTTTGTAAT+TGG + chr8_3:19287373-19287392 Msa1280620:intron 10.0%
!!! TTCATTTTTTATTTTGTAAT+TGG + chr8_3:19287373-19287392 Msa1280620:intron 10.0%
!! AAAAAATAAAGTTTATTGAT+TGG - chr8_3:19287720-19287739 None:intergenic 10.0%
!!! AATTTACAATTTTTTGATTG+CGG + chr8_3:19283711-19283730 Msa1280620:intron 15.0%
!! AAAATTGAAAATTGACAAAA+GGG - chr8_3:19283878-19283897 None:intergenic 15.0%
!! TCATAAAAACAAAATAAAAG+GGG - chr8_3:19283948-19283967 None:intergenic 15.0%
!! AAAATCAAAAATTGACAAAA+GGG - chr8_3:19283983-19284002 None:intergenic 15.0%
!! AAAAATCAAAAATTGACAAA+AGG - chr8_3:19283984-19284003 None:intergenic 15.0%
!! AAAATTGAAAATTAACAACA+GGG - chr8_3:19284094-19284113 None:intergenic 15.0%
!! AAAAATTGAAAATTAACAAC+AGG - chr8_3:19284095-19284114 None:intergenic 15.0%
!!! TGTTGTTAATTTTCAATTTT+TGG + chr8_3:19284094-19284113 Msa1280620:intron 15.0%
!!! TTTTTCAAAAGTTTCAATAA+GGG - chr8_3:19284569-19284588 None:intergenic 15.0%
!!! TTTTTTCAAAAGTTTCAATA+AGG - chr8_3:19284570-19284589 None:intergenic 15.0%
!! ATTATTTCACACAAAATATT+AGG + chr8_3:19286007-19286026 Msa1280620:intron 15.0%
!! TTATTTCACACAAAATATTA+GGG + chr8_3:19286008-19286027 Msa1280620:intron 15.0%
!!! TTTTTTATTTCTTTTCAGAT+TGG + chr8_3:19286767-19286786 Msa1280620:intron 15.0%
!! GAAAAATACAAACAATTATA+AGG - chr8_3:19287787-19287806 None:intergenic 15.0%
!!! TTTTTTATCCTTTTACTTTT+TGG - chr8_3:19289048-19289067 None:intergenic 15.0%
!! AAAAGGATAAAAAATTGTTT+AGG + chr8_3:19289054-19289073 Msa1280620:three_prime_UTR 15.0%
!! AAAGGATAAAAAATTGTTTA+GGG + chr8_3:19289055-19289074 Msa1280620:three_prime_UTR 15.0%
!! GGATTTAATATAAGAAGATT+TGG + chr8_3:19283217-19283236 Msa1280620:five_prime_UTR 20.0%
!!! ATTTTCAATGCAATTAAAAG+TGG - chr8_3:19283286-19283305 Msa1280610:intron 20.0%
!!! TTGTTTTGCTTTATTTGTTT+AGG - chr8_3:19283327-19283346 None:intergenic 20.0%
!!! ATGTTGAATTTTGTTAATTG+TGG + chr8_3:19283807-19283826 Msa1280620:intron 20.0%
!! GAAAATTGAAAATTGACAAA+AGG - chr8_3:19283879-19283898 None:intergenic 20.0%
!!! AATCCAATAGTGATAAATTT+TGG + chr8_3:19283901-19283920 Msa1280620:intron 20.0%
!! AAATCAAAAATTGACAAAAG+GGG - chr8_3:19283982-19284001 None:intergenic 20.0%
!!! CTGTTAAATTTTGTTTATTG+TGG + chr8_3:19284126-19284145 Msa1280620:intron 20.0%
!! TTATGGATTTGAAAAATGAA+AGG + chr8_3:19285361-19285380 Msa1280620:CDS 20.0%
!! TGATATATGTTAGAACTTTA+TGG + chr8_3:19285508-19285527 Msa1280620:intron 20.0%
!! ATAGAAAATTGAATTCTCTT+CGG + chr8_3:19285961-19285980 Msa1280620:intron 20.0%
!!! CAATTTTTACTTATGCAATA+AGG - chr8_3:19286104-19286123 None:intergenic 20.0%
!! ATAGAAAAACAATAAATGCT+TGG - chr8_3:19286139-19286158 None:intergenic 20.0%
!! AAATTATTATCCCTTTAATC+TGG + chr8_3:19286564-19286583 Msa1280620:intron 20.0%
!!! ATGTCTTTGAAGAATAAATT+TGG + chr8_3:19286897-19286916 Msa1280620:CDS 20.0%
!!! TGTCTTTGAAGAATAAATTT+GGG + chr8_3:19286898-19286917 Msa1280620:CDS 20.0%
!!! CTATGAATAATCAATTGTTT+TGG + chr8_3:19287247-19287266 Msa1280620:intron 20.0%
!! TTCATGATATTGTATATGTT+TGG + chr8_3:19287350-19287369 Msa1280620:intron 20.0%
!! TTCATGATATTGTATATGTT+CGG + chr8_3:19287350-19287369 Msa1280620:intron 20.0%
!! AAATTAGATGAAATTCTTAC+TGG - chr8_3:19287627-19287646 None:intergenic 20.0%
!!! TATTGATTGGCAATAATATA+CGG - chr8_3:19287707-19287726 None:intergenic 20.0%
!!! TTGTATTTTTCTTTATTCAC+AGG + chr8_3:19287796-19287815 Msa1280620:intron 20.0%
!! TATGTAAACCAAAAAGTAAA+AGG + chr8_3:19289037-19289056 Msa1280620:three_prime_UTR 20.0%
!! TGTAATGTGTTTTCAGATTT+TGG - chr8_3:19283260-19283279 Msa1280610:intron 25.0%
! GAACCAAAATTTATCACTAT+TGG - chr8_3:19283907-19283926 None:intergenic 25.0%
! AATAATTGAACCCCTTTATT+AGG + chr8_3:19284151-19284170 Msa1280620:intron 25.0%
! ATAATTGAACCCCTTTATTA+GGG + chr8_3:19284152-19284171 Msa1280620:intron 25.0%
!!! CTGATTTTTGAATTAGTTTG+AGG + chr8_3:19284405-19284424 Msa1280620:intron 25.0%
!! ACCATAGATTAAACTGATTT+AGG + chr8_3:19284455-19284474 Msa1280620:intron 25.0%
!! CCATAGATTAAACTGATTTA+GGG + chr8_3:19284456-19284475 Msa1280620:intron 25.0%
!!! CGTGCTAATTTTAATTTTCA+CGG + chr8_3:19284856-19284875 Msa1280620:intron 25.0%
! AAATTGACTAACGAAAGATA+TGG - chr8_3:19285631-19285650 None:intergenic 25.0%
! ATCATATTCATAAGCATAGT+GGG - chr8_3:19285690-19285709 None:intergenic 25.0%
! TATCATATTCATAAGCATAG+TGG - chr8_3:19285691-19285710 None:intergenic 25.0%
! AAAGTAAAGATAAAGATCAG+AGG - chr8_3:19285739-19285758 None:intergenic 25.0%
!!! GTTCAGATAATTTGTTTCTA+GGG - chr8_3:19285763-19285782 None:intergenic 25.0%
!!! AGTTCAGATAATTTGTTTCT+AGG - chr8_3:19285764-19285783 None:intergenic 25.0%
! AAACTTATCTTCACAAGTTT+GGG - chr8_3:19285798-19285817 None:intergenic 25.0%
! AAAACTTATCTTCACAAGTT+TGG - chr8_3:19285799-19285818 None:intergenic 25.0%
! TAGATAACAAGCAACAAATA+AGG - chr8_3:19285848-19285867 None:intergenic 25.0%
! GTTTCAAGGAAAAAAAAACA+GGG - chr8_3:19286448-19286467 None:intergenic 25.0%
! TGTTTCAAGGAAAAAAAAAC+AGG - chr8_3:19286449-19286468 None:intergenic 25.0%
!!! TTTTTTTTCCTTGAAACAGT+TGG + chr8_3:19286451-19286470 Msa1280620:intron 25.0%
! TTGAGTCAAAAAATATCAGA+GGG - chr8_3:19286491-19286510 None:intergenic 25.0%
! ATTGAGTCAAAAAATATCAG+AGG - chr8_3:19286492-19286511 None:intergenic 25.0%
! AATTAGTAGCCAAGTTATAT+TGG + chr8_3:19286509-19286528 Msa1280620:intron 25.0%
! ATTAGTAGCCAAGTTATATT+GGG + chr8_3:19286510-19286529 Msa1280620:intron 25.0%
! AATCAAAACCCAATATAACT+TGG - chr8_3:19286521-19286540 None:intergenic 25.0%
! TGAGTATTTATGTATCTTGT+TGG + chr8_3:19286603-19286622 Msa1280620:intron 25.0%
!! TATACCGCTATAATAGTTTT+GGG + chr8_3:19286689-19286708 Msa1280620:intron 25.0%
!! TATCTAAGATTAACAACCAA+CGG + chr8_3:19286725-19286744 Msa1280620:intron 25.0%
! TATTATAGATCAAAAACCGT+TGG - chr8_3:19286744-19286763 None:intergenic 25.0%
!! GTCTTTGAAGAATAAATTTG+GGG + chr8_3:19286899-19286918 Msa1280620:CDS 25.0%
!! TCTTTGAAGAATAAATTTGG+GGG + chr8_3:19286900-19286919 Msa1280620:CDS 25.0%
! AAATATACTACAATGCTGTA+GGG - chr8_3:19287137-19287156 None:intergenic 25.0%
! CTTGTGATTTAATTATTCAG+TGG + chr8_3:19287302-19287321 Msa1280620:intron 25.0%
!! ATTTCTGTTTTGTATTGTCT+TGG + chr8_3:19287643-19287662 Msa1280620:intron 25.0%
!! TCTAAAGTTTGAGTATATGA+AGG - chr8_3:19287745-19287764 None:intergenic 25.0%
!!! TTTGTTCTTGATTTTAGAGT+CGG + chr8_3:19288163-19288182 Msa1280620:intron 25.0%
!!! TACAAAGTTTTGTCAAATAG+AGG + chr8_3:19288259-19288278 Msa1280620:intron 25.0%
! ATGAGATCCAATAAATTAGA+GGG - chr8_3:19288475-19288494 None:intergenic 25.0%
! AATGAGATCCAATAAATTAG+AGG - chr8_3:19288476-19288495 None:intergenic 25.0%
!! ATCATTCTCTTTTCTGTTTT+GGG + chr8_3:19289010-19289029 Msa1280620:three_prime_UTR 25.0%
! TTTCAACTTTCCAAGTTAAA+AGG + chr8_3:19289165-19289184 Msa1280620:three_prime_UTR 25.0%
! ATGTTTTGTAATGTTCCTTC+TGG - chr8_3:19283441-19283460 None:intergenic 30.0%
!! ACTTTAAGGTTTCTTGTTCT+AGG - chr8_3:19283464-19283483 None:intergenic 30.0%
TAGAACAAGAAACCTTAAAG+TGG + chr8_3:19283463-19283482 Msa1280620:CDS 30.0%
AGAACAAGAAACCTTAAAGT+GGG + chr8_3:19283464-19283483 Msa1280620:CDS 30.0%
AGAAACCATTAACCAAAGTA+GGG - chr8_3:19283641-19283660 None:intergenic 30.0%
!!! GTGATAAATTTTGGTTCTTG+TGG + chr8_3:19283910-19283929 Msa1280620:intron 30.0%
!! GTATTGTGATGATGTTTTGT+AGG + chr8_3:19284198-19284217 Msa1280620:intron 30.0%
CCCTAAATCAGTTTAATCTA+TGG - chr8_3:19284459-19284478 None:intergenic 30.0%
!! TGATTTAGGGTGAATCTTTT+GGG + chr8_3:19284469-19284488 Msa1280620:intron 30.0%
! CAGTGATTTGAGTTAAAGAT+AGG + chr8_3:19284498-19284517 Msa1280620:intron 30.0%
!! GAAACTTTTGAAAAAAGCGT+AGG + chr8_3:19284574-19284593 Msa1280620:intron 30.0%
CTCTTTACTATATAATCCAC+AGG - chr8_3:19284700-19284719 None:intergenic 30.0%
AGATCTATAGATAAATGAGC+TGG + chr8_3:19284760-19284779 Msa1280620:intron 30.0%
TTCAGGTAATAAATGGACAA+AGG - chr8_3:19284973-19284992 None:intergenic 30.0%
TTGTCCATTTATTACCTGAA+TGG + chr8_3:19284973-19284992 Msa1280620:intron 30.0%
!! GTTAAATTCCTGCTATTTCT+AGG - chr8_3:19285152-19285171 None:intergenic 30.0%
TTTCAAGGAACATATCGAAA+AGG - chr8_3:19285201-19285220 None:intergenic 30.0%
ATGTTCCTTGAAAGAAAAAG+AGG + chr8_3:19285208-19285227 Msa1280620:intron 30.0%
! CTATTCCTCTTTTTCTTTCA+AGG - chr8_3:19285216-19285235 None:intergenic 30.0%
CTTGAAAGAAAAAGAGGAAT+AGG + chr8_3:19285214-19285233 Msa1280620:intron 30.0%
GAATAGGAATAGAAACACAA+TGG + chr8_3:19285230-19285249 Msa1280620:intron 30.0%
AGTGGCAATTAAGATTTCAA+CGG - chr8_3:19285414-19285433 None:intergenic 30.0%
TCATGTATCTGTATCACAAA+CGG + chr8_3:19285436-19285455 Msa1280620:intron 30.0%
! TATCATATTTCTATCGAGTC+CGG - chr8_3:19285493-19285512 None:intergenic 30.0%
! CTTGTGAAGATAAGTTTTCA+AGG + chr8_3:19285801-19285820 Msa1280620:intron 30.0%
!! ATTTGTTGCTTGTTATCTAG+AGG + chr8_3:19285849-19285868 Msa1280620:intron 30.0%
!! GAGGCTTTAAATTAATCTTG+AGG + chr8_3:19285868-19285887 Msa1280620:intron 30.0%
GACTATTTATGCGAAAACAT+TGG + chr8_3:19285901-19285920 Msa1280620:intron 30.0%
ATTTCTCAGAGACTTATGAT+AGG - chr8_3:19286049-19286068 None:intergenic 30.0%
! CTTTACTGCAGAATTTTTCA+AGG - chr8_3:19286072-19286091 None:intergenic 30.0%
CTTGAAAAATTCTGCAGTAA+AGG + chr8_3:19286070-19286089 Msa1280620:intron 30.0%
!!! TTGGGTTTTGATTTGTTTTC+TGG + chr8_3:19286528-19286547 Msa1280620:intron 30.0%
GCAAAATACACCAGATTAAA+GGG - chr8_3:19286577-19286596 None:intergenic 30.0%
AGCAAAATACACCAGATTAA+AGG - chr8_3:19286578-19286597 None:intergenic 30.0%
TGTTGGAATTTGTGTTTAGT+TGG + chr8_3:19286620-19286639 Msa1280620:intron 30.0%
! CTATACCGCTATAATAGTTT+TGG + chr8_3:19286688-19286707 Msa1280620:intron 30.0%
!! ATACCGCTATAATAGTTTTG+GGG + chr8_3:19286690-19286709 Msa1280620:intron 30.0%
TGGTTGTTAATCTTAGATAG+TGG - chr8_3:19286724-19286743 None:intergenic 30.0%
!!! ATTCCCATCAGTTTTAGAAA+AGG + chr8_3:19286860-19286879 Msa1280620:CDS 30.0%
!!! TTCCCATCAGTTTTAGAAAA+GGG + chr8_3:19286861-19286880 Msa1280620:CDS 30.0%
TTTAGTCAGGTATGCATTTA+AGG + chr8_3:19286927-19286946 Msa1280620:intron 30.0%
ATAATTGTGTGAAGTTGACT+AGG + chr8_3:19286961-19286980 Msa1280620:intron 30.0%
AACCAGTGTTATCTAATAGT+GGG + chr8_3:19287014-19287033 Msa1280620:intron 30.0%
TGATACTAAATAGTGTAGTG+CGG - chr8_3:19287087-19287106 None:intergenic 30.0%
CAAATATACTACAATGCTGT+AGG - chr8_3:19287138-19287157 None:intergenic 30.0%
AAGTAACCTATCATCTTCAT+TGG + chr8_3:19287222-19287241 Msa1280620:intron 30.0%
AATTATTCAGTGGCATAACT+AGG + chr8_3:19287312-19287331 Msa1280620:intron 30.0%
ATTATTCAGTGGCATAACTA+GGG + chr8_3:19287313-19287332 Msa1280620:intron 30.0%
AAGTACACAATATCATACGA+AGG - chr8_3:19287418-19287437 None:intergenic 30.0%
GCTTTATGAAACAGAAAGAT+TGG + chr8_3:19287862-19287881 Msa1280620:CDS 30.0%
!! TAATCTGCTTGTTATATCTG+TGG + chr8_3:19287958-19287977 Msa1280620:intron 30.0%
! CATTCTTGCTTTAAGTAACT+TGG - chr8_3:19288050-19288069 None:intergenic 30.0%
CATCATACAACATGTAAAAC+TGG - chr8_3:19288096-19288115 None:intergenic 30.0%
!!! CAATATCATCGAGTTTTGAA+AGG - chr8_3:19288434-19288453 None:intergenic 30.0%
CTTTCAAAACTCGATGATAT+TGG + chr8_3:19288432-19288451 Msa1280620:intron 30.0%
! GATATTGGTTGAAAGTTAAG+TGG + chr8_3:19288447-19288466 Msa1280620:intron 30.0%
AAACACTTTCTGTTATTGGT+TGG - chr8_3:19288543-19288562 None:intergenic 30.0%
CTTCAAACACTTTCTGTTAT+TGG - chr8_3:19288547-19288566 None:intergenic 30.0%
!!! ATAACCACGAGGATTTTTTT+CGG - chr8_3:19288651-19288670 None:intergenic 30.0%
! GTCATTACTGTATTCTCTTT+TGG + chr8_3:19288949-19288968 Msa1280620:three_prime_UTR 30.0%
! CATCATTCTCTTTTCTGTTT+TGG + chr8_3:19289009-19289028 Msa1280620:three_prime_UTR 30.0%
CTTTCCAAGTTAAAAGGTAA+AGG + chr8_3:19289171-19289190 Msa1280620:three_prime_UTR 30.0%
TTAGGCTTGAGGTTTGAATT+TGG - chr8_3:19283309-19283328 None:intergenic 35.0%
!! GCTTTATTTGTTTAGGCTTG+AGG - chr8_3:19283320-19283339 None:intergenic 35.0%
TGTAATGTTCCTTCTGGTAA+TGG - chr8_3:19283435-19283454 None:intergenic 35.0%
ATCGGTTGAGATAATGAGAA+CGG - chr8_3:19283571-19283590 None:intergenic 35.0%
ATTCACAAAAACCCCTACTT+TGG + chr8_3:19283626-19283645 Msa1280620:CDS 35.0%
AAAACCCCTACTTTGGTTAA+TGG + chr8_3:19283633-19283652 Msa1280620:CDS 35.0%
GAAACCATTAACCAAAGTAG+GGG - chr8_3:19283640-19283659 None:intergenic 35.0%
GAGAAACCATTAACCAAAGT+AGG - chr8_3:19283642-19283661 None:intergenic 35.0%
! GTGTTGAATTTTGCTTCTTG+TGG + chr8_3:19283736-19283755 Msa1280620:intron 35.0%
! GTGTTGAATTTTGCTTCTTG+TGG + chr8_3:19283736-19283755 Msa1280620:intron 35.0%
ACAGACCAATCCCTAATAAA+GGG - chr8_3:19284165-19284184 None:intergenic 35.0%
!! TTGTGATGATGTTTTGTAGG+AGG + chr8_3:19284201-19284220 Msa1280620:intron 35.0%
! AATTTGTTCAATGAGCTAGC+TGG + chr8_3:19284274-19284293 Msa1280620:CDS 35.0%
!! CTGATTTAGGGTGAATCTTT+TGG + chr8_3:19284468-19284487 Msa1280620:intron 35.0%
AGCACGTATAGTAGAAAAGA+TGG + chr8_3:19284633-19284652 Msa1280620:intron 35.0%
ACGTATAGTAGAAAAGATGG+TGG + chr8_3:19284636-19284655 Msa1280620:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr8_3:19284644-19284663 Msa1280620:intron 35.0%
ATGCATCTACGATACTAACT+GGG - chr8_3:19284832-19284851 None:intergenic 35.0%
!!! ATTGGGAAATTGGTTTTCAG+TGG - chr8_3:19284934-19284953 None:intergenic 35.0%
AGTGATTGGAATTGGGAAAT+TGG - chr8_3:19284944-19284963 None:intergenic 35.0%
CACACCATTCAGGTAATAAA+TGG - chr8_3:19284980-19284999 None:intergenic 35.0%
CATTTATTACCTGAATGGTG+TGG + chr8_3:19284978-19284997 Msa1280620:intron 35.0%
TGCAATTCAGAGTCTTTGAT+TGG + chr8_3:19285016-19285035 Msa1280620:intron 35.0%
!!! TCACCATCTAGTTTTGTTTG+AGG + chr8_3:19285056-19285075 Msa1280620:intron 35.0%
ATGCCTCAAACAAAACTAGA+TGG - chr8_3:19285062-19285081 None:intergenic 35.0%
ACAATCTTTCCTCAAACACA+CGG + chr8_3:19285115-19285134 Msa1280620:intron 35.0%
TGATACAGATACATGACAAG+TGG - chr8_3:19285432-19285451 None:intergenic 35.0%
CATGTATCTGTATCACAAAC+GGG + chr8_3:19285437-19285456 Msa1280620:intron 35.0%
AAACTGGACATATTGAGTAC+TGG + chr8_3:19285460-19285479 Msa1280620:intron 35.0%
AGTTCCAACTTAGTGGAATA+AGG + chr8_3:19285551-19285570 Msa1280620:intron 35.0%
TATCCTGAAAATAGATACCG+AGG + chr8_3:19285590-19285609 Msa1280620:intron 35.0%
GGTAAAAAACATACCAACCT+CGG - chr8_3:19285610-19285629 None:intergenic 35.0%
! ATAGTGGGATTCATGCAAAA+AGG - chr8_3:19285675-19285694 None:intergenic 35.0%
TATGCGAAAACATTGGTATC+TGG + chr8_3:19285908-19285927 Msa1280620:intron 35.0%
TCTCTTCGGAAATTAAGACA+TGG + chr8_3:19285975-19285994 Msa1280620:intron 35.0%
CTCTTCGGAAATTAAGACAT+GGG + chr8_3:19285976-19285995 Msa1280620:intron 35.0%
CAACATTTCAATATCCCTAC+GGG - chr8_3:19286204-19286223 None:intergenic 35.0%
GCAACATTTCAATATCCCTA+CGG - chr8_3:19286205-19286224 None:intergenic 35.0%
AAAATATCAGAGGGCAAACA+GGG - chr8_3:19286482-19286501 None:intergenic 35.0%
AAAAATATCAGAGGGCAAAC+AGG - chr8_3:19286483-19286502 None:intergenic 35.0%
!! ATTTCTAGTCTTCGCAATAG+CGG + chr8_3:19286650-19286669 Msa1280620:intron 35.0%
ATAGCGGTATAGCAGATAAT+AGG - chr8_3:19286680-19286699 None:intergenic 35.0%
AGACCCCAAAACTATTATAG+CGG - chr8_3:19286696-19286715 None:intergenic 35.0%
!!! GACCCTTTTCTAAAACTGAT+GGG - chr8_3:19286866-19286885 None:intergenic 35.0%
!!! AGACCCTTTTCTAAAACTGA+TGG - chr8_3:19286867-19286886 None:intergenic 35.0%
TTTAGAAAAGGGTCTTGCAA+AGG + chr8_3:19286872-19286891 Msa1280620:CDS 35.0%
CAACCAGTGTTATCTAATAG+TGG + chr8_3:19287013-19287032 Msa1280620:intron 35.0%
TACCCACTATTAGATAACAC+TGG - chr8_3:19287019-19287038 None:intergenic 35.0%
! TTTTGTCAAGTAGCGACTAT+AGG + chr8_3:19287109-19287128 Msa1280620:intron 35.0%
ATAGAGCCAATGAAGATGAT+AGG - chr8_3:19287231-19287250 None:intergenic 35.0%
!!! TGTTTTGGTTCTTCTGATTC+TGG + chr8_3:19287262-19287281 Msa1280620:intron 35.0%
TTATTCAGTGGCATAACTAG+GGG + chr8_3:19287314-19287333 Msa1280620:intron 35.0%
TTCATAAAGCGAGAGGAATT+CGG - chr8_3:19287852-19287871 None:intergenic 35.0%
TTTCTGTTTCATAAAGCGAG+AGG - chr8_3:19287859-19287878 None:intergenic 35.0%
!! GAAAATGCAGCAGAAGTATT+TGG + chr8_3:19288069-19288088 Msa1280620:CDS 35.0%
ACAAAACAACTTACCTCTTG+TGG - chr8_3:19288148-19288167 None:intergenic 35.0%
! ATAGTGTAGCGGAATTTGAA+CGG + chr8_3:19288303-19288322 Msa1280620:intron 35.0%
!!! GTTTTGAAAGGAATGTCGAA+AGG - chr8_3:19288422-19288441 None:intergenic 35.0%
AGTGGATCCCTCTAATTTAT+TGG + chr8_3:19288465-19288484 Msa1280620:intron 35.0%
TTATTGGATCTCATTCTCTG+TGG + chr8_3:19288481-19288500 Msa1280620:intron 35.0%
!! AGTCCCACCATTTTAGAAAT+GGG - chr8_3:19288512-19288531 None:intergenic 35.0%
! AAGTGTTTGAAGTCAGAAGT+CGG + chr8_3:19288555-19288574 Msa1280620:intron 35.0%
GATTATCACAAATAACCACG+AGG - chr8_3:19288662-19288681 None:intergenic 35.0%
CTACTGCATATGGATTCATA+CGG - chr8_3:19288799-19288818 None:intergenic 35.0%
TACTTGATCTCTACTGCATA+TGG - chr8_3:19288809-19288828 None:intergenic 35.0%
AAAAGAGGCAGAAGAAGAAT+TGG + chr8_3:19288870-19288889 Msa1280620:CDS 35.0%
AGAATTGGAGAGAGTCAAAA+CGG + chr8_3:19288885-19288904 Msa1280620:CDS 35.0%
ACTCATAAACTGAAAGTTGC+AGG - chr8_3:19289111-19289130 None:intergenic 35.0%
GCAACTTTCAGTTTATGAGT+TGG + chr8_3:19289111-19289130 Msa1280620:three_prime_UTR 35.0%
!! GTCACCTTTACCTTTTAACT+TGG - chr8_3:19289178-19289197 None:intergenic 35.0%
GTTAAAAGGTAAAGGTGACA+TGG + chr8_3:19289179-19289198 Msa1280620:three_prime_UTR 35.0%
! CAACGTTGTTGCTATTGCTA+TGG + chr8_3:19283401-19283420 Msa1280620:exon 40.0%
GAAGATCAACCATTACCAGA+AGG + chr8_3:19283423-19283442 Msa1280620:CDS 40.0%
!! ACCTTAAAGTGGGTTTTCGT+TGG + chr8_3:19283474-19283493 Msa1280620:CDS 40.0%
ACCAACGAAAACCCACTTTA+AGG - chr8_3:19283478-19283497 None:intergenic 40.0%
!! TTAAAGTGGGTTTTCGTTGG+TGG + chr8_3:19283477-19283496 Msa1280620:CDS 40.0%
GCTAAGATTATGAGCAGGAT+CGG - chr8_3:19283589-19283608 None:intergenic 40.0%
TTTCTCCAATCTCTATGCCA+TGG + chr8_3:19283656-19283675 Msa1280620:CDS 40.0%
ACAAACCATGGCATAGAGAT+TGG - chr8_3:19283664-19283683 None:intergenic 40.0%
GTGATAGAGTGAACAAACCA+TGG - chr8_3:19283676-19283695 None:intergenic 40.0%
TGAACCCCTTTATTAGGGAT+TGG + chr8_3:19284157-19284176 Msa1280620:intron 40.0%
CAGACCAATCCCTAATAAAG+GGG - chr8_3:19284164-19284183 None:intergenic 40.0%
CACAGACCAATCCCTAATAA+AGG - chr8_3:19284166-19284185 None:intergenic 40.0%
!! TGATGATGTTTTGTAGGAGG+TGG + chr8_3:19284204-19284223 Msa1280620:intron 40.0%
ATATCCTCATGCTCAACTGT+AGG - chr8_3:19284232-19284251 None:intergenic 40.0%
TACAGTTGAGCATGAGGATA+TGG + chr8_3:19284231-19284250 Msa1280620:CDS 40.0%
ACAGTTGAGCATGAGGATAT+GGG + chr8_3:19284232-19284251 Msa1280620:CDS 40.0%
!! AGGATATGGGTAGTTCTGAT+GGG + chr8_3:19284245-19284264 Msa1280620:CDS 40.0%
TGCAATTCCTGGAATTGATG+AGG + chr8_3:19284297-19284316 Msa1280620:CDS 40.0%
! AAACTAGGCTTAGGGTGTTT+GGG + chr8_3:19284659-19284678 Msa1280620:intron 40.0%
TACGATACTAACTGGGAAAC+TGG - chr8_3:19284825-19284844 None:intergenic 40.0%
CATGCATCTACGATACTAAC+TGG - chr8_3:19284833-19284852 None:intergenic 40.0%
GAGAGACAGTGATTGGAATT+GGG - chr8_3:19284951-19284970 None:intergenic 40.0%
!!! CTTTTGAAACCGTGTGTTTG+AGG - chr8_3:19285127-19285146 None:intergenic 40.0%
CTCAAACACACGGTTTCAAA+AGG + chr8_3:19285125-19285144 Msa1280620:intron 40.0%
CAAAAGGACCTAGAAATAGC+AGG + chr8_3:19285141-19285160 Msa1280620:intron 40.0%
GAATAGAAACACAATGGCAG+TGG + chr8_3:19285236-19285255 Msa1280620:intron 40.0%
! ACTAAGTTGGAACTGCTACA+TGG - chr8_3:19285545-19285564 None:intergenic 40.0%
ATGTAGCAGTTCCAACTTAG+TGG + chr8_3:19285544-19285563 Msa1280620:intron 40.0%
!! CAAGCCTTATTCCACTAAGT+TGG - chr8_3:19285558-19285577 None:intergenic 40.0%
CAACTTAGTGGAATAAGGCT+TGG + chr8_3:19285556-19285575 Msa1280620:intron 40.0%
! CAACCTCGGTATCTATTTTC+AGG - chr8_3:19285596-19285615 None:intergenic 40.0%
CTGAAAATAGATACCGAGGT+TGG + chr8_3:19285594-19285613 Msa1280620:intron 40.0%
AAGATAAAGATCAGAGGCCA+CGG - chr8_3:19285733-19285752 None:intergenic 40.0%
AAAACATTGGTATCTGGTGG+TGG + chr8_3:19285914-19285933 Msa1280620:intron 40.0%
GCAGCACATACTTGATTAAC+AGG - chr8_3:19286180-19286199 None:intergenic 40.0%
! CGGTTTTGCAGAACAGTTTA+GGG + chr8_3:19286301-19286320 Msa1280620:intron 40.0%
TGCAATTTCAATGCTACCCA+TGG + chr8_3:19286335-19286354 Msa1280620:intron 40.0%
TTTCAGATTGGTGCAGACAA+TGG + chr8_3:19286779-19286798 Msa1280620:intron 40.0%
ATTGCAAGAGTCTAAGGGTA+TGG - chr8_3:19286842-19286861 None:intergenic 40.0%
TGGGAATTGCAAGAGTCTAA+GGG - chr8_3:19286847-19286866 None:intergenic 40.0%
ATGGGAATTGCAAGAGTCTA+AGG - chr8_3:19286848-19286867 None:intergenic 40.0%
! ATTTGGGGGTTTGTTTAGTC+AGG + chr8_3:19286914-19286933 Msa1280620:CDS 40.0%
! TTTGGCATGGGTGATGATTT+TGG + chr8_3:19287528-19287547 Msa1280620:CDS 40.0%
TTTGGTGAAGATGCAATCCT+TGG + chr8_3:19287546-19287565 Msa1280620:CDS 40.0%
TTGGTGAAGATGCAATCCTT+GGG + chr8_3:19287547-19287566 Msa1280620:CDS 40.0%
TCATAAAGCGAGAGGAATTC+GGG - chr8_3:19287851-19287870 None:intergenic 40.0%
CAAGTTATCTTCGACGATGA+AGG + chr8_3:19287935-19287954 Msa1280620:CDS 40.0%
! TAGTGTAGCGGAATTTGAAC+GGG + chr8_3:19288304-19288323 Msa1280620:intron 40.0%
!!! AATTTGAACGGGCTGCTTTT+GGG + chr8_3:19288315-19288334 Msa1280620:intron 40.0%
CTCATGCAGTAATATACGCA+TGG - chr8_3:19288373-19288392 None:intergenic 40.0%
!! GGACCCATTTCTAAAATGGT+GGG + chr8_3:19288506-19288525 Msa1280620:intron 40.0%
!! GAGTCCCACCATTTTAGAAA+TGG - chr8_3:19288513-19288532 None:intergenic 40.0%
GATCAGTAGTGCAAATTGAC+AGG + chr8_3:19288726-19288745 Msa1280620:intron 40.0%
AGTGCAAATTGACAGGTTAC+TGG + chr8_3:19288733-19288752 Msa1280620:intron 40.0%
GCGGTTAGAGAATAGAGTAA+CGG + chr8_3:19288831-19288850 Msa1280620:CDS 40.0%
GCTACAACACCAGTTAAAAG+AGG + chr8_3:19288855-19288874 Msa1280620:CDS 40.0%
! CTTCTTCTGCCTCTTTTAAC+TGG - chr8_3:19288867-19288886 None:intergenic 40.0%
GAATTGGAGAGAGTCAAAAC+GGG + chr8_3:19288886-19288905 Msa1280620:CDS 40.0%
AATTGGAGAGAGTCAAAACG+GGG + chr8_3:19288887-19288906 Msa1280620:CDS 40.0%
GCATCGCTAAGATTATGAGC+AGG - chr8_3:19283594-19283613 None:intergenic 45.0%
!! GAGGATATGGGTAGTTCTGA+TGG + chr8_3:19284244-19284263 Msa1280620:CDS 45.0%
!! TATGGGTAGTTCTGATGGGA+TGG + chr8_3:19284249-19284268 Msa1280620:CDS 45.0%
CTCATAGCCTCATCAATTCC+AGG - chr8_3:19284307-19284326 None:intergenic 45.0%
TCGCAACAACACTAGAGAGA+GGG + chr8_3:19284597-19284616 Msa1280620:intron 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG + chr8_3:19284650-19284669 Msa1280620:intron 45.0%
!! GATGGTGGAAACTAGGCTTA+GGG + chr8_3:19284651-19284670 Msa1280620:intron 45.0%
! GAAACTAGGCTTAGGGTGTT+TGG + chr8_3:19284658-19284677 Msa1280620:intron 45.0%
GTATGTAGAGAGAAGACCTG+TGG + chr8_3:19284681-19284700 Msa1280620:intron 45.0%
!! ATTGGGTACTGAAGCAGATC+TGG - chr8_3:19284798-19284817 None:intergenic 45.0%
ATCTGCTTCAGTACCCAATC+TGG + chr8_3:19284799-19284818 Msa1280620:intron 45.0%
TTTCAGTGGAGACGACAAGA+TGG - chr8_3:19284920-19284939 None:intergenic 45.0%
GGAGAGACAGTGATTGGAAT+TGG - chr8_3:19284952-19284971 None:intergenic 45.0%
GACAAAGGAGAGACAGTGAT+TGG - chr8_3:19284958-19284977 None:intergenic 45.0%
AAACACAATGGCAGTGGCTT+CGG + chr8_3:19285242-19285261 Msa1280620:intron 45.0%
CGAGTAACTGTGTTGCAGAA+TGG + chr8_3:19285324-19285343 Msa1280620:CDS 45.0%
TGGTGAGCGTAACACTGTTA+TGG + chr8_3:19285344-19285363 Msa1280620:CDS 45.0%
CTGTATCACAAACGGGAAAC+TGG + chr8_3:19285444-19285463 Msa1280620:intron 45.0%
!! ATTGAGTACTGGAGCAGATC+CGG + chr8_3:19285471-19285490 Msa1280620:intron 45.0%
AGATAAAGATCAGAGGCCAC+GGG - chr8_3:19285732-19285751 None:intergenic 45.0%
GCGAAAACATTGGTATCTGG+TGG + chr8_3:19285911-19285930 Msa1280620:intron 45.0%
! GCGGTTTTGCAGAACAGTTT+AGG + chr8_3:19286300-19286319 Msa1280620:intron 45.0%
GTCAACAGTAGCAACGAAAG+CGG + chr8_3:19286364-19286383 Msa1280620:intron 45.0%
! GGGTATTGCCAACTGTTTCA+AGG - chr8_3:19286462-19286481 None:intergenic 45.0%
GTATTTGATACTGCTCCCAC+TGG + chr8_3:19286816-19286835 Msa1280620:CDS 45.0%
! TAGTGGGTATATCAGCGCTA+TGG + chr8_3:19287030-19287049 Msa1280620:intron 45.0%
GTATATCAGCGCTATGGTGT+AGG + chr8_3:19287036-19287055 Msa1280620:intron 45.0%
TCACAGATGACTCGCATGTT+TGG + chr8_3:19287510-19287529 Msa1280620:intron 45.0%
ATGACTCGCATGTTTGGCAT+GGG + chr8_3:19287516-19287535 Msa1280620:CDS 45.0%
!! TCATTCCTTCTAGCTTCCCA+AGG - chr8_3:19287566-19287585 None:intergenic 45.0%
TGGGAAGCTAGAAGGAATGA+AGG + chr8_3:19287566-19287585 Msa1280620:CDS 45.0%
GGGAATGCAAACACAGACAA+AGG - chr8_3:19287831-19287850 None:intergenic 45.0%
AACTTGGATTCGACATCTGC+AGG - chr8_3:19288034-19288053 None:intergenic 45.0%
! GCTGTAGCTCTATAGTGTAG+CGG + chr8_3:19288292-19288311 Msa1280620:intron 45.0%
!!! GAATTTGAACGGGCTGCTTT+TGG + chr8_3:19288314-19288333 Msa1280620:intron 45.0%
TTGGATCTCATTCTCTGTGG+TGG + chr8_3:19288484-19288503 Msa1280620:intron 45.0%
TGGATCTCATTCTCTGTGGT+GGG + chr8_3:19288485-19288504 Msa1280620:intron 45.0%
! GGTGGGACCCATTTCTAAAA+TGG + chr8_3:19288502-19288521 Msa1280620:intron 45.0%
!! GGGACCCATTTCTAAAATGG+TGG + chr8_3:19288505-19288524 Msa1280620:intron 45.0%
GATGCCGAAAAAAATCCTCG+TGG + chr8_3:19288644-19288663 Msa1280620:intron 45.0%
GCAGTAGAGATCAAGTAGAG+CGG + chr8_3:19288812-19288831 Msa1280620:CDS 45.0%
AGTCAAAACGGGGAAGAACA+AGG + chr8_3:19288897-19288916 Msa1280620:CDS 45.0%
!! AAAATTGTAAATTTAAAAAA+GGG - chr8_3:19283704-19283723 None:intergenic 5.0%
!! AAAAATTGTAAATTTAAAAA+AGG - chr8_3:19283705-19283724 None:intergenic 5.0%
!!! TAAAAAAAAAAAAAAGTATA+AGG - chr8_3:19284056-19284075 None:intergenic 5.0%
!!! TTTAACTTAATTTTATATAA+AGG + chr8_3:19285166-19285185 Msa1280620:intron 5.0%
!!! TTAACTTAATTTTATATAAA+GGG + chr8_3:19285167-19285186 Msa1280620:intron 5.0%
!!! TGGGTTTTCGTTGGTGGCAA+AGG + chr8_3:19283483-19283502 Msa1280620:CDS 50.0%
!!! GTTTTCGTTGGTGGCAAAGG+TGG + chr8_3:19283486-19283505 Msa1280620:CDS 50.0%
GGATCCTACAGTTGAGCATG+AGG + chr8_3:19284225-19284244 Msa1280620:CDS 50.0%
GTCGCAACAACACTAGAGAG+AGG + chr8_3:19284596-19284615 Msa1280620:intron 50.0%
ACTAGAGAGAGGGAGAGAGT+TGG + chr8_3:19284607-19284626 Msa1280620:intron 50.0%
ACTGGGAAACTGGCCAGATT+GGG - chr8_3:19284815-19284834 None:intergenic 50.0%
AACTGGGAAACTGGCCAGAT+TGG - chr8_3:19284816-19284835 None:intergenic 50.0%
TGGTGAGGCAAATCGAGAAC+TGG - chr8_3:19284900-19284919 None:intergenic 50.0%
TTACCTGAATGGTGTGGTCG+TGG + chr8_3:19284984-19285003 Msa1280620:intron 50.0%
TACCTGAATGGTGTGGTCGT+GGG + chr8_3:19284985-19285004 Msa1280620:intron 50.0%
TGTTGCTGTCGAGCTGTTGA+GGG + chr8_3:19285265-19285284 Msa1280620:intron 50.0%
!! CAGAGCGATTCAAGGTACTG+CGG + chr8_3:19285296-19285315 Msa1280620:intron 50.0%
!! CATTGGTATCTGGTGGTGGA+TGG + chr8_3:19285918-19285937 Msa1280620:intron 50.0%
! AAGTATGTGCTGCTCCCGTA+GGG + chr8_3:19286187-19286206 Msa1280620:intron 50.0%
ACTGTGATCACGCGCTAAAG+CGG + chr8_3:19286281-19286300 Msa1280620:intron 50.0%
TACTGTTGACCACTCGCCAT+GGG - chr8_3:19286354-19286373 None:intergenic 50.0%
ACCTTCTCTGCCGCAATTAG+CGG - chr8_3:19286390-19286409 None:intergenic 50.0%
TTTCACAGCCGCATTTGTGC+TGG + chr8_3:19286411-19286430 Msa1280620:intron 50.0%
TTCACAGCCGCATTTGTGCT+GGG + chr8_3:19286412-19286431 Msa1280620:intron 50.0%
TGCAATCCCCAGCACAAATG+CGG - chr8_3:19286422-19286441 None:intergenic 50.0%
! AGTCTAAGGGTATGGCCAGT+GGG - chr8_3:19286834-19286853 None:intergenic 50.0%
GATGACTCGCATGTTTGGCA+TGG + chr8_3:19287515-19287534 Msa1280620:intron 50.0%
GCAATCCTTGGGAAGCTAGA+AGG + chr8_3:19287558-19287577 Msa1280620:CDS 50.0%
CTTACCTCTTGTGGAAGCAG+TGG - chr8_3:19288139-19288158 None:intergenic 50.0%
ATAGAGCTACAGCGCTGCTA+TGG - chr8_3:19288285-19288304 None:intergenic 50.0%
! AAGTCGGAGAGTGTGTTGCT+AGG + chr8_3:19288571-19288590 Msa1280620:intron 50.0%
!! GTTGGTGGCAAAGGTGGTGT+TGG + chr8_3:19283492-19283511 Msa1280620:CDS 55.0%
GAGCTAGCTGGTGCAATTCC+TGG + chr8_3:19284286-19284305 Msa1280620:CDS 55.0%
GTGGAGACGACAAGATGGTG+AGG - chr8_3:19284915-19284934 None:intergenic 55.0%
AACCCACGACCACACCATTC+AGG - chr8_3:19284990-19285009 None:intergenic 55.0%
TGAATGGTGTGGTCGTGGGT+TGG + chr8_3:19284989-19285008 Msa1280620:intron 55.0%
GAATGGTGTGGTCGTGGGTT+GGG + chr8_3:19284990-19285009 Msa1280620:intron 55.0%
! GTGTTGCTGTCGAGCTGTTG+AGG + chr8_3:19285264-19285283 Msa1280620:intron 55.0%
!! AGCGATTCAAGGTACTGCGG+CGG + chr8_3:19285299-19285318 Msa1280620:CDS 55.0%
! CAAGTATGTGCTGCTCCCGT+AGG + chr8_3:19286186-19286205 Msa1280620:intron 55.0%
TCAATGCTACCCATGGCGAG+TGG + chr8_3:19286342-19286361 Msa1280620:intron 55.0%
CTACTGTTGACCACTCGCCA+TGG - chr8_3:19286355-19286374 None:intergenic 55.0%
ACGAAAGCGGCCGCTAATTG+CGG + chr8_3:19286377-19286396 Msa1280620:intron 55.0%
TCACAGCCGCATTTGTGCTG+GGG + chr8_3:19286413-19286432 Msa1280620:intron 55.0%
! GAGTCTAAGGGTATGGCCAG+TGG - chr8_3:19286835-19286854 None:intergenic 55.0%
! GGAGTGTCAGAGTGTGTTGC+TGG - chr8_3:19288401-19288420 None:intergenic 55.0%
!! TCGAGCTGTTGAGGGTGCTG+CGG + chr8_3:19285273-19285292 Msa1280620:intron 60.0%
TGCTGCGGCAGAGCGATTCA+AGG + chr8_3:19285288-19285307 Msa1280620:intron 60.0%
GCCGCTAATTGCGGCAGAGA+AGG + chr8_3:19286386-19286405 Msa1280620:intron 60.0%
GCTGCCACTGCTTCCACAAG+AGG + chr8_3:19288132-19288151 Msa1280620:CDS 60.0%
! ACGGGAGAGTGCAGGACAGC+AGG - chr8_3:19285714-19285733 None:intergenic 65.0%
TGCTGTCCTGCACTCTCCCG+TGG + chr8_3:19285713-19285732 Msa1280620:intron 65.0%
! CAGAGGCCACGGGAGAGTGC+AGG - chr8_3:19285722-19285741 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 19283216 19289236 19283216 ID=Msa1280620;Name=Msa1280620
chr8_3 mRNA 19283216 19289236 19283216 ID=Msa1280620-mRNA-1;Parent=Msa1280620;Name=Msa1280620-mRNA-1;_AED=0.13;_eAED=0.13;_QI=204|0.71|0.87|0.87|1|1|8|312|386
chr8_3 exon 19283216 19283677 19283216 ID=Msa1280620-mRNA-1:exon:7159;Parent=Msa1280620-mRNA-1
chr8_3 exon 19284220 19284344 19284220 ID=Msa1280620-mRNA-1:exon:7160;Parent=Msa1280620-mRNA-1
chr8_3 exon 19285299 19285382 19285299 ID=Msa1280620-mRNA-1:exon:7161;Parent=Msa1280620-mRNA-1
chr8_3 exon 19286785 19286935 19286785 ID=Msa1280620-mRNA-1:exon:7162;Parent=Msa1280620-mRNA-1
chr8_3 exon 19287516 19287626 19287516 ID=Msa1280620-mRNA-1:exon:7163;Parent=Msa1280620-mRNA-1
chr8_3 exon 19287818 19287956 19287818 ID=Msa1280620-mRNA-1:exon:7164;Parent=Msa1280620-mRNA-1
chr8_3 exon 19288038 19288153 19288038 ID=Msa1280620-mRNA-1:exon:7165;Parent=Msa1280620-mRNA-1
chr8_3 exon 19288748 19289236 19288748 ID=Msa1280620-mRNA-1:exon:7166;Parent=Msa1280620-mRNA-1
chr8_3 five_prime_UTR 19283216 19283419 19283216 ID=Msa1280620-mRNA-1:five_prime_utr;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19283420 19283677 19283420 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19284220 19284344 19284220 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19285299 19285382 19285299 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19286785 19286935 19286785 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19287516 19287626 19287516 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19287818 19287956 19287818 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19288038 19288153 19288038 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 CDS 19288748 19288924 19288748 ID=Msa1280620-mRNA-1:cds;Parent=Msa1280620-mRNA-1
chr8_3 three_prime_UTR 19288925 19289236 19288925 ID=Msa1280620-mRNA-1:three_prime_utr;Parent=Msa1280620-mRNA-1
Gene Sequence

>Msa1280620

ATGGAAGATCAACCATTACCAGAAGGAACATTACAAAACATCCTAGAACAAGAAACCTTAAAGTGGGTTTTCGTTGGTGGCAAAGGTGGTGTTGGAAAAACAACATGCAGTTCAATTCTCTCTATTCTTCTCGCTTCTGTTCGTTCTTCCGTTCTCATTATCTCAACCGATCCTGCTCATAATCTTAGCGATGCTTTTCAACAACGATTCACAAAAACCCCTACTTTGGTTAATGGTTTCTCCAATCTCTATGCCATGGAGGTGGATCCTACAGTTGAGCATGAGGATATGGGTAGTTCTGATGGGATGGATAATTTGTTCAATGAGCTAGCTGGTGCAATTCCTGGAATTGATGAGGCTATGAGCTTTGCTGAGATGTTGAAAGCGATTCAAGGTACTGCGGCGGAGCGAGTAACTGTGTTGCAGAATGGTGAGCGTAACACTGTTATGGATTTGAAAAATGAAAGATTGGTGCAGACAATGGATTATTCTGTTATTGTATTTGATACTGCTCCCACTGGCCATACCCTTAGACTCTTGCAATTCCCATCAGTTTTAGAAAAGGGTCTTGCAAAGGTGATGTCTTTGAAGAATAAATTTGGGGGTTTGTTTAGTCAGATGACTCGCATGTTTGGCATGGGTGATGATTTTGGTGAAGATGCAATCCTTGGGAAGCTAGAAGGAATGAAGGATGTAATTGAACAAGTTAATATGCAATTCAAAGATCCAGACATGACAACCTTTGTCTGTGTTTGCATTCCCGAATTCCTCTCGCTTTATGAAACAGAAAGATTGGTTCAAGAACTCACAAAGTTTGAGATCGACACACACAATATCATCATTAATCAAGTTATCTTCGACGATGAAGATGTCGAATCCAAGTTACTTAAAGCAAGAATGAAAATGCAGCAGAAGTATTTGGACCAGTTTTACATGTTGTATGATGACTTTAACATTACTAAGCTGCCACTGCTTCCACAAGAGGTTACTGGTGTTGAAGCTCTAAGATCATTTTCAAAACATTTTACAACACCGTATGAATCCATATGCAGTAGAGATCAAGTAGAGCGGTTAGAGAATAGAGTAACGGCGCTACAACACCAGTTAAAAGAGGCAGAAGAAGAATTGGAGAGAGTCAAAACGGGGAAGAACAAGGATTGA

Protein sequence

>Msa1280620

MEDQPLPEGTLQNILEQETLKWVFVGGKGGVGKTTCSSILSILLASVRSSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPTVEHEDMGSSDGMDNLFNELAGAIPGIDEAMSFAEMLKAIQGTAAERVTVLQNGERNTVMDLKNERLVQTMDYSVIVFDTAPTGHTLRLLQFPSVLEKGLAKVMSLKNKFGGLFSQMTRMFGMGDDFGEDAILGKLEGMKDVIEQVNMQFKDPDMTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVIFDDEDVESKLLKARMKMQQKYLDQFYMLYDDFNITKLPLLPQEVTGVEALRSFSKHFTTPYESICSRDQVERLENRVTALQHQLKEAEEELERVKTGKNKD*