AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527910 MtrunA17_Chr4g0028231 99.559 227 1 0 1 227 1 227 1.14e-162 448
Msa0527910 MtrunA17_Chr1g0183621 31.892 185 126 0 1 185 1 185 1.18e-25 99.8
Msa0527910 MtrunA17_Chr2g0303251 29.730 222 148 1 5 226 1 214 4.89e-21 87.4
Msa0527910 MtrunA17_Chr7g0261511 32.018 228 133 4 5 227 1 211 1.35e-18 80.9
Msa0527910 MtrunA17_Chr2g0300321 28.634 227 146 5 7 226 4 221 5.15e-15 71.2
Msa0527910 MtrunA17_Chr8g0343561 27.684 177 126 2 7 182 4 179 1.40e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527910 AT5G22950.1 82.969 229 37 1 1 227 1 229 4.32e-126 356
Msa0527910 AT3G45000.1 72.362 199 53 1 31 227 2 200 1.04e-87 258
Msa0527910 AT3G45000.2 76.259 139 31 1 91 227 1 139 6.56e-59 182
Msa0527910 AT1G03950.1 31.532 222 140 3 5 226 1 210 1.05e-28 107
Msa0527910 AT5G44560.1 29.834 181 127 0 5 185 1 181 9.37e-21 87.0
Msa0527910 AT5G44560.4 29.213 178 126 0 5 182 1 178 6.22e-20 84.3
Msa0527910 AT2G06530.1 29.362 235 142 7 4 226 1 223 6.92e-17 77.0
Msa0527910 AT5G44560.2 28.662 157 112 0 29 185 5 161 1.19e-14 70.5
Msa0527910 AT2G06530.2 28.638 213 129 6 25 226 2 202 9.17e-13 65.5
Msa0527910 AT5G44560.3 30.534 131 91 0 5 135 1 131 1.04e-12 64.3

Find 62 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATAACTGTTGCGGATT+TGG 0.126196 4_1:+572949 None:intergenic
ATTATATATACAAAATAAAA+TGG 0.182644 4_1:+573022 None:intergenic
AAGAAGAAATGGAAGAAATT+AGG 0.185877 4_1:-568326 Msa0527910:CDS
ACTCTCTTATAATATATATC+AGG 0.254147 4_1:+568156 None:intergenic
TGCATAGCAACAGCCATTTC+AGG 0.256684 4_1:+568774 None:intergenic
GAATGAAAATTAATTATTCT+TGG 0.264027 4_1:+573063 None:intergenic
CGCAACAGTTATTGCGAGAT+TGG 0.304376 4_1:-572942 Msa0527910:CDS
AACTGTTGCGGATTTGGTTT+CGG 0.312520 4_1:+572955 None:intergenic
CCCATTTGTAATATTAGTAT+TGG 0.323850 4_1:-568116 Msa0527910:three_prime_UTR
TCCAATACTAATATTACAAA+TGG 0.345851 4_1:+568115 None:intergenic
TTATATATACAAAATAAAAT+GGG 0.355594 4_1:+573023 None:intergenic
GAACCGTCTGCATGAAAATA+AGG 0.358366 4_1:-571563 Msa0527910:CDS
TGACCTGACTTTAGCGAGTC+TGG 0.371271 4_1:+568302 None:intergenic
AGAAGAAATGGAAGAAATTA+GGG 0.376649 4_1:-568325 Msa0527910:CDS
CCTCACAGCTTCAGGAAGTT+GGG 0.383224 4_1:+568507 None:intergenic
TCCTCACAGCTTCAGGAAGT+TGG 0.391690 4_1:+568506 None:intergenic
CTACAGAACTTGTGAGATCT+AGG 0.401420 4_1:-571594 Msa0527910:CDS
TCATAAACGAGTTTCTAAAA+AGG 0.417167 4_1:-568282 Msa0527910:exon
TGTAATATTAGTATTGGAAA+AGG 0.419711 4_1:-568110 Msa0527910:three_prime_UTR
CCTCATGAAGGCTCCTGAAA+TGG 0.421101 4_1:-568787 Msa0527910:CDS
TCCTCTGCGGCACTTTGAGC+AGG 0.453503 4_1:+568466 None:intergenic
TTCAGCAATTGCTCGTACTG+TGG 0.454062 4_1:-568853 Msa0527910:intron
CATATTAGCTATGATGCCAT+TGG 0.473050 4_1:+568077 None:intergenic
GGAATATAAATTATCGAAGA+AGG 0.474281 4_1:+573116 None:intergenic
TGATTTAGATATTCAGAGAG+AGG 0.474813 4_1:-572776 Msa0527910:intron
TGTTGATGATGAAGAAGAAA+TGG 0.478357 4_1:-568337 Msa0527910:CDS
TTCTTCATCATCAACACCCT+CGG 0.485224 4_1:+568344 None:intergenic
CCAATACTAATATTACAAAT+GGG 0.494913 4_1:+568116 None:intergenic
AGGTGGGTGTGTTGTTCGTA+AGG 0.498532 4_1:-573184 Msa0527910:five_prime_UTR
GTTTCAGGCAGGAGTAATTG+AGG 0.506660 4_1:-568638 Msa0527910:intron
GGGCCAGACTCGCTAAAGTC+AGG 0.512607 4_1:-568305 Msa0527910:CDS
CTATTAAAGAAGCTGCTAAG+AGG 0.518339 4_1:-572735 Msa0527910:CDS
AAAGTCTTAACTGAATTAGC+TGG 0.521196 4_1:-568541 Msa0527910:CDS
TCAGCAATTGCTCGTACTGT+GGG 0.530452 4_1:-568852 Msa0527910:intron
AACATTGAACGACAAATTCG+CGG 0.539995 4_1:-572892 Msa0527910:intron
AAAAGAGAAGATATTGAAGG+TGG 0.544495 4_1:-573201 Msa0527910:five_prime_UTR
TGAAGCTGTGAGGAAACAAA+AGG 0.551851 4_1:-568497 Msa0527910:CDS
CAATCTCGCAATAACTGTTG+CGG 0.559721 4_1:+572943 None:intergenic
AAAAGGTGACTTATTACCAA+TGG 0.570569 4_1:-568093 Msa0527910:three_prime_UTR
TGCTCAAAGTGCCGCAGAGG+AGG 0.582103 4_1:-568464 Msa0527910:intron
CTCTCTTATAATATATATCA+GGG 0.589567 4_1:+568157 None:intergenic
AACTCAATATCAATGCACCT+TGG 0.594406 4_1:-571532 Msa0527910:CDS
ACCTGCTCAAAGTGCCGCAG+AGG 0.595296 4_1:-568467 Msa0527910:CDS
TATATATACAAAATAAAATG+GGG 0.596746 4_1:+573024 None:intergenic
AAAGAGAAGATATTGAAGGT+GGG 0.600642 4_1:-573200 Msa0527910:five_prime_UTR
TGACTCAGCATTAGATTCTG+AGG 0.600712 4_1:-568596 Msa0527910:CDS
TGAAGATTAGATCTTACTGA+AGG 0.602356 4_1:+573095 None:intergenic
CAGGAAGATGCTATAGCCGA+GGG 0.609938 4_1:-568360 Msa0527910:CDS
GCTTGTCAATAACCTCATGA+AGG 0.612171 4_1:-568799 Msa0527910:CDS
ACCTACCAACACTTTCTCCA+AGG 0.615558 4_1:+571515 None:intergenic
CCATTTCAGGAGCCTTCATG+AGG 0.615981 4_1:+568787 None:intergenic
GAATGACATTGGTTCTGCAA+AGG 0.618815 4_1:-572713 Msa0527910:intron
GCAGGAAGATGCTATAGCCG+AGG 0.620355 4_1:-568361 Msa0527910:intron
ATGCACCTTGGAGAAAGTGT+TGG 0.628455 4_1:-571520 Msa0527910:intron
ATTGACAAGCTTCATAACCT+CGG 0.641959 4_1:+568812 None:intergenic
TATATCAGGGCACAATGCAG+AGG 0.655974 4_1:+568170 None:intergenic
CACAGCTTCAGGAAGTTGGG+CGG 0.666714 4_1:+568510 None:intergenic
CCCAACTTCCTGAAGCTGTG+AGG 0.668950 4_1:-568507 Msa0527910:CDS
AACTGCATGTACCTCCTCTG+CGG 0.671034 4_1:+568453 None:intergenic
GCTGCTAAGAGGAATGACAT+TGG 0.677222 4_1:-572724 Msa0527910:CDS
ACATCTATCAAAGAGTGCCG+AGG 0.689000 4_1:-568829 Msa0527910:CDS
GTTCAGCAAAGAAATGACCA+AGG 0.706921 4_1:-568748 Msa0527910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTATTT+TGG - chr4_1:569114-569133 Msa0527910:intron 0.0%
!!! TTTTTTTTTTTTTTTATTTT+GGG - chr4_1:569115-569134 Msa0527910:intron 0.0%
!! TATATATACAAAATAAAATG+GGG + chr4_1:568212-568231 None:intergenic 10.0%
!!! ATATTTTTTAATCTTTACAA+TGG - chr4_1:571281-571300 Msa0527910:intron 10.0%
!! GAATGAAAATTAATTATTCT+TGG + chr4_1:568173-568192 None:intergenic 15.0%
!! TTTCTCTTAAAAAAATTTCT+AGG + chr4_1:568848-568867 None:intergenic 15.0%
!!! TTTTTAATTAAGAGTATGTT+TGG + chr4_1:569972-569991 None:intergenic 15.0%
!! AAAAAAAACCTAAGTTAAAT+AGG - chr4_1:570105-570124 Msa0527910:intron 15.0%
!!! ATTTTATCTATAGTTTTTTG+AGG - chr4_1:570409-570428 Msa0527910:intron 15.0%
!! ATAAAAAGAGAAGATATTGA+AGG - chr4_1:568029-568048 Msa0527910:three_prime_UTR 20.0%
!!! TTTTAAGAGAGATCAAAAAA+TGG + chr4_1:568373-568392 None:intergenic 20.0%
!!! TTTTATTCTTAAGTTACTAC+AGG + chr4_1:568604-568623 None:intergenic 20.0%
!!! TAAGAATAAAATTAGCTTAG+TGG - chr4_1:568613-568632 Msa0527910:CDS 20.0%
!! AAATTTAGTGATTAATGAGT+TGG - chr4_1:568878-568897 Msa0527910:intron 20.0%
!!! GTTTTATCATAAACCATATT+TGG + chr4_1:568906-568925 None:intergenic 20.0%
!! TATGGTTTATGATAAAACAT+AGG - chr4_1:568908-568927 Msa0527910:intron 20.0%
!! ATGGTTTATGATAAAACATA+GGG - chr4_1:568909-568928 Msa0527910:intron 20.0%
!!! AGTGTATATACAAGTTTTTA+TGG - chr4_1:569302-569321 Msa0527910:intron 20.0%
!! AAAATCTAATATCCTTATCA+TGG - chr4_1:569591-569610 Msa0527910:intron 20.0%
!!! ATGATCAAATGTTTTGTTAT+GGG - chr4_1:570157-570176 Msa0527910:intron 20.0%
!!! CATAATTGTTTCATTTTAGA+TGG - chr4_1:571204-571223 Msa0527910:intron 20.0%
!!! TTTTTTAATCTTTACAATGG+CGG - chr4_1:571284-571303 Msa0527910:intron 20.0%
!!! CTGTATGTTTTACAATTATA+AGG - chr4_1:571478-571497 Msa0527910:intron 20.0%
!! AAGATAAAACTTCATGAAAT+TGG - chr4_1:571817-571836 Msa0527910:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG - chr4_1:572159-572178 Msa0527910:intron 20.0%
!!! TGATCAATACTCAATTTTAA+AGG + chr4_1:572313-572332 None:intergenic 20.0%
!! GTTAATTGCATGATAATTAT+TGG - chr4_1:572561-572580 Msa0527910:intron 20.0%
!! CTCTCTTATAATATATATCA+GGG + chr4_1:573079-573098 None:intergenic 20.0%
!! ACTCTCTTATAATATATATC+AGG + chr4_1:573080-573099 None:intergenic 20.0%
!! CCAATACTAATATTACAAAT+GGG + chr4_1:573120-573139 None:intergenic 20.0%
!! TCCAATACTAATATTACAAA+TGG + chr4_1:573121-573140 None:intergenic 20.0%
!!! TGTAATATTAGTATTGGAAA+AGG - chr4_1:573123-573142 Msa0527910:five_prime_UTR 20.0%
! GGAATATAAATTATCGAAGA+AGG + chr4_1:568120-568139 None:intergenic 25.0%
!!! ATAAAATGGGGATTTTTTGA+AGG + chr4_1:568200-568219 None:intergenic 25.0%
! GAAGAATCAAGTATCAATTA+GGG + chr4_1:568396-568415 None:intergenic 25.0%
! AGAAGAATCAAGTATCAATT+AGG + chr4_1:568397-568416 None:intergenic 25.0%
! TTGATTCTTCTGATTATTTG+TGG - chr4_1:568406-568425 Msa0527910:intron 25.0%
! TGATTATTTGTGGTTATGAT+TGG - chr4_1:568416-568435 Msa0527910:intron 25.0%
!!! TTCATAACCAATGCTATTTT+TGG - chr4_1:569478-569497 Msa0527910:intron 25.0%
!!! GTCTTCTTTTTTAGATTTCA+AGG - chr4_1:569529-569548 Msa0527910:intron 25.0%
! ATTGAACAAATACCATGATA+AGG + chr4_1:569606-569625 None:intergenic 25.0%
! ATGGTATTTGTTCAATTTAC+AGG - chr4_1:569610-569629 Msa0527910:intron 25.0%
!! CAAGTTTACCTATTTAACTT+AGG + chr4_1:570116-570135 None:intergenic 25.0%
!!! GATGATCAAATGTTTTGTTA+TGG - chr4_1:570156-570175 Msa0527910:intron 25.0%
!!! TGATCAAATGTTTTGTTATG+GGG - chr4_1:570158-570177 Msa0527910:intron 25.0%
!! AACTGTCTACAGATTTTTAT+AGG - chr4_1:570194-570213 Msa0527910:intron 25.0%
!! CAGATTTTTATAGGTTTTTG+AGG - chr4_1:570203-570222 Msa0527910:intron 25.0%
!!! AATTTTGATTCTAACTACAC+AGG - chr4_1:571145-571164 Msa0527910:intron 25.0%
!!! TTTCTTTTGAGAAGATAAAG+CGG - chr4_1:571240-571259 Msa0527910:intron 25.0%
!! TGATTTTCATACAAAGGATT+AGG + chr4_1:571948-571967 None:intergenic 25.0%
!! TAACTGTGATTTTCATACAA+AGG + chr4_1:571954-571973 None:intergenic 25.0%
!!! TGCATTTTTAGGTTTTACTT+TGG - chr4_1:572020-572039 Msa0527910:intron 25.0%
!!! GCATTTTTAGGTTTTACTTT+GGG - chr4_1:572021-572040 Msa0527910:intron 25.0%
!!! CATTTTTAGGTTTTACTTTG+GGG - chr4_1:572022-572041 Msa0527910:intron 25.0%
! CATAATATAGTCATTGTACA+AGG + chr4_1:572185-572204 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG - chr4_1:572334-572353 Msa0527910:intron 25.0%
!! TCATTGGAAATTCCTAATTT+TGG - chr4_1:572350-572369 Msa0527910:intron 25.0%
! AAGAAGAAATGGAAGAAATT+AGG - chr4_1:572907-572926 Msa0527910:CDS 25.0%
! AGAAGAAATGGAAGAAATTA+GGG - chr4_1:572908-572927 Msa0527910:CDS 25.0%
!! TCATAAACGAGTTTCTAAAA+AGG - chr4_1:572951-572970 Msa0527910:CDS 25.0%
! TCATAAAAAGTTCTACTTTC+TGG - chr4_1:573027-573046 Msa0527910:five_prime_UTR 25.0%
! CCCATTTGTAATATTAGTAT+TGG - chr4_1:573117-573136 Msa0527910:five_prime_UTR 25.0%
AAAAGAGAAGATATTGAAGG+TGG - chr4_1:568032-568051 Msa0527910:three_prime_UTR 30.0%
AAAGAGAAGATATTGAAGGT+GGG - chr4_1:568033-568052 Msa0527910:three_prime_UTR 30.0%
TGAAGATTAGATCTTACTGA+AGG + chr4_1:568141-568160 None:intergenic 30.0%
!!! ATTTTGGGATCAGTGAAAAA+TGG - chr4_1:568232-568251 Msa0527910:three_prime_UTR 30.0%
TGATTTAGATATTCAGAGAG+AGG - chr4_1:568457-568476 Msa0527910:intron 30.0%
AGTAAGGAGTTTAGATTAGA+TGG - chr4_1:568796-568815 Msa0527910:CDS 30.0%
! TAATGAGTTGGATCCAAATA+TGG - chr4_1:568890-568909 Msa0527910:intron 30.0%
GTACAAACCAAAAATAGCAT+TGG + chr4_1:569488-569507 None:intergenic 30.0%
!!! ATGCTATTTTTGGTTTGTAC+TGG - chr4_1:569488-569507 Msa0527910:intron 30.0%
AAAAAAGAAGACTGCCTAAA+AGG + chr4_1:569521-569540 None:intergenic 30.0%
AAGGTTCGATAGAATAAAGT+AGG - chr4_1:569548-569567 Msa0527910:intron 30.0%
!! GTAGTTTTGCAAAATCACAA+TGG + chr4_1:569824-569843 None:intergenic 30.0%
! GCACAACTTTTGATAAATCA+CGG - chr4_1:569911-569930 Msa0527910:intron 30.0%
AAGCACAATTATCATACAAC+TGG + chr4_1:570023-570042 None:intergenic 30.0%
!!! TTTATAGGTTTTTGAGGTTG+AGG - chr4_1:570209-570228 Msa0527910:intron 30.0%
!!! TTATAGGTTTTTGAGGTTGA+GGG - chr4_1:570210-570229 Msa0527910:intron 30.0%
!!! TCTATAGTTTTTTGAGGTTG+AGG - chr4_1:570415-570434 Msa0527910:intron 30.0%
!!! CTATAGTTTTTTGAGGTTGA+GGG - chr4_1:570416-570435 Msa0527910:intron 30.0%
TATCTTAACATGCTATAGCT+AGG - chr4_1:570512-570531 Msa0527910:intron 30.0%
AACATGATCAATGTATAGCT+AGG - chr4_1:570604-570623 Msa0527910:intron 30.0%
! AAGTCTGAATTTTATTCACG+AGG - chr4_1:570900-570919 Msa0527910:intron 30.0%
! TAGCTAATTTTATTAGCTCC+AGG - chr4_1:571086-571105 Msa0527910:intron 30.0%
! AGCTAATTTTATTAGCTCCA+GGG - chr4_1:571087-571106 Msa0527910:intron 30.0%
! TCATTCTATGGTGTTAATCT+TGG + chr4_1:571443-571462 None:intergenic 30.0%
ACTTATTCTCTTCTTGAATG+TGG + chr4_1:571560-571579 None:intergenic 30.0%
AAGAAGAGAATAAGTCAGTA+AGG - chr4_1:571565-571584 Msa0527910:CDS 30.0%
AGAAGAGAATAAGTCAGTAA+GGG - chr4_1:571566-571585 Msa0527910:CDS 30.0%
AGCCAAATAACAAACTTAAC+AGG - chr4_1:571602-571621 Msa0527910:CDS 30.0%
!! CTCCTGTTAAGTTTGTTATT+TGG + chr4_1:571607-571626 None:intergenic 30.0%
CAAATAACAAACTTAACAGG+AGG - chr4_1:571605-571624 Msa0527910:intron 30.0%
AATGTATGTAAGAGTTAGAG+AGG - chr4_1:571655-571674 Msa0527910:intron 30.0%
GAAAGTCGTTTGATATGAAA+AGG + chr4_1:571765-571784 None:intergenic 30.0%
! AGTGTGATTTTCATACGATT+AGG + chr4_1:571787-571806 None:intergenic 30.0%
! TTCATGAAATTGGAAGTATG+TGG - chr4_1:571827-571846 Msa0527910:intron 30.0%
CAAATTAAAACAGGAAGAGA+GGG - chr4_1:572084-572103 Msa0527910:intron 30.0%
AAATTAAAACAGGAAGAGAG+GGG - chr4_1:572085-572104 Msa0527910:intron 30.0%
AATTAACTTCTATGACTACG+GGG + chr4_1:572548-572567 None:intergenic 30.0%
CAATTAACTTCTATGACTAC+GGG + chr4_1:572549-572568 None:intergenic 30.0%
GCAATTAACTTCTATGACTA+CGG + chr4_1:572550-572569 None:intergenic 30.0%
!! TTGGTAATGTATTCTGTTTC+AGG - chr4_1:572580-572599 Msa0527910:intron 30.0%
AAAGTCTTAACTGAATTAGC+TGG - chr4_1:572692-572711 Msa0527910:intron 30.0%
AGTTCAATTTCCTGTTAACA+AGG - chr4_1:572799-572818 Msa0527910:intron 30.0%
TGGAATGCATTATTATTTGC+AGG - chr4_1:572854-572873 Msa0527910:intron 30.0%
!! TGTTGATGATGAAGAAGAAA+TGG - chr4_1:572896-572915 Msa0527910:CDS 30.0%
AAAAGGTGACTTATTACCAA+TGG - chr4_1:573140-573159 Msa0527910:five_prime_UTR 30.0%
!!! ATGGGGATTTTTTGAAGGAT+TGG + chr4_1:568195-568214 None:intergenic 35.0%
AACATTGAACGACAAATTCG+CGG - chr4_1:568341-568360 Msa0527910:CDS 35.0%
CTATTAAAGAAGCTGCTAAG+AGG - chr4_1:568498-568517 Msa0527910:CDS 35.0%
ACCTATAGTAGAAAAGATCG+TGG - chr4_1:568721-568740 Msa0527910:intron 35.0%
! TCCACGATCTTTTCTACTAT+AGG + chr4_1:568725-568744 None:intergenic 35.0%
! GACGTGTAGATTTTGTAGTA+AGG - chr4_1:568780-568799 Msa0527910:CDS 35.0%
AAGGAGTTTAGATTAGATGG+AGG - chr4_1:568799-568818 Msa0527910:CDS 35.0%
CTTATCTCATTAAGTGGGAT+AGG + chr4_1:568953-568972 None:intergenic 35.0%
CTATCCCACTTAATGAGATA+AGG - chr4_1:568951-568970 Msa0527910:intron 35.0%
! CAAGCCTTATCTCATTAAGT+GGG + chr4_1:568958-568977 None:intergenic 35.0%
GTTTCAAAAGGCTAGAAGTT+TGG + chr4_1:569208-569227 None:intergenic 35.0%
!!! TTCTAGCCTTTTGAAACAAC+AGG - chr4_1:569211-569230 Msa0527910:intron 35.0%
GAAAGACAGTACATTGAATG+AGG + chr4_1:569254-569273 None:intergenic 35.0%
! TACCCAATTGAAGGCATATT+CGG - chr4_1:569359-569378 Msa0527910:intron 35.0%
AACTCAATATCAATGCACCT+TGG - chr4_1:569701-569720 Msa0527910:intron 35.0%
AACTACACTTTGTGCATGTT+TGG - chr4_1:569838-569857 Msa0527910:intron 35.0%
! CAACTTTTGATAAATCACGG+TGG - chr4_1:569914-569933 Msa0527910:intron 35.0%
TCTAAACATGTGCTATACCT+AGG - chr4_1:570310-570329 Msa0527910:intron 35.0%
CTAAACATGTGCTATACCTA+GGG - chr4_1:570311-570330 Msa0527910:intron 35.0%
CTAAAAGAGACCAAACAAGA+GGG - chr4_1:570366-570385 Msa0527910:intron 35.0%
TAAAAGAGACCAAACAAGAG+GGG - chr4_1:570367-570386 Msa0527910:intron 35.0%
TATAGCTAGGAACAGGAAAA+GGG - chr4_1:570525-570544 Msa0527910:intron 35.0%
ATCAATGTATAGCTAGGAAC+AGG - chr4_1:570610-570629 Msa0527910:intron 35.0%
ATGACTAAGGAATGAATGAC+TGG + chr4_1:570788-570807 None:intergenic 35.0%
AGTCATTCATTCCTTAGTCA+TGG - chr4_1:570787-570806 Msa0527910:intron 35.0%
GTCATTCATTCCTTAGTCAT+GGG - chr4_1:570788-570807 Msa0527910:intron 35.0%
! TTCTCTTTTTCTTATGCCTC+AGG + chr4_1:570841-570860 None:intergenic 35.0%
AGAAAAAGAGAAAGCGAGTT+AGG - chr4_1:570849-570868 Msa0527910:intron 35.0%
!! ATTTTATTCACGAGGCATTC+TGG - chr4_1:570908-570927 Msa0527910:intron 35.0%
!! TTTTATTCACGAGGCATTCT+GGG - chr4_1:570909-570928 Msa0527910:intron 35.0%
TCAGGCGTATATATTAGTGT+TGG - chr4_1:571008-571027 Msa0527910:intron 35.0%
!! TTGGTGCTTATGCATGTTTT+TGG - chr4_1:571027-571046 Msa0527910:intron 35.0%
! TGGTGCTTATGCATGTTTTT+GGG - chr4_1:571028-571047 Msa0527910:intron 35.0%
TTGATTCTAACTACACAGGA+TGG - chr4_1:571149-571168 Msa0527910:intron 35.0%
TGATTCTAACTACACAGGAT+GGG - chr4_1:571150-571169 Msa0527910:intron 35.0%
GCAGACTAAACAATTCCTAT+AGG + chr4_1:571181-571200 None:intergenic 35.0%
ATAGGAATTGTTTAGTCTGC+AGG - chr4_1:571181-571200 Msa0527910:intron 35.0%
TTGTAAAAAAAAGGGCAACC+CGG + chr4_1:571381-571400 None:intergenic 35.0%
!!! GGTTGCCCTTTTTTTTACAA+TGG - chr4_1:571381-571400 Msa0527910:intron 35.0%
!!! TGCCCTTTTTTTTACAATGG+CGG - chr4_1:571384-571403 Msa0527910:intron 35.0%
AGCCGCCATTGTAAAAAAAA+GGG + chr4_1:571389-571408 None:intergenic 35.0%
TAGCCGCCATTGTAAAAAAA+AGG + chr4_1:571390-571409 None:intergenic 35.0%
! TTTTACAATGGCGGCTATAT+TGG - chr4_1:571393-571412 Msa0527910:intron 35.0%
ACCATAGAATGACATTGACA+AGG - chr4_1:571451-571470 Msa0527910:intron 35.0%
CCATAGAATGACATTGACAA+GGG - chr4_1:571452-571471 Msa0527910:intron 35.0%
CATAACTGAACTTGACTAGT+AGG - chr4_1:571513-571532 Msa0527910:intron 35.0%
GAAGAGAATAAGTCAGTAAG+GGG - chr4_1:571567-571586 Msa0527910:CDS 35.0%
TTAACAGGAGGTAATAGTTG+TGG - chr4_1:571617-571636 Msa0527910:intron 35.0%
TAACAGGAGGTAATAGTTGT+GGG - chr4_1:571618-571637 Msa0527910:intron 35.0%
GTAAGAGTTAGAGAGGAAAT+TGG - chr4_1:571662-571681 Msa0527910:intron 35.0%
TTTAATTGACACCTCCTTTG+TGG - chr4_1:571997-572016 Msa0527910:intron 35.0%
AACCTAAAAATGCACCACAA+AGG + chr4_1:572014-572033 None:intergenic 35.0%
! GGGGATAAAATTTTACTGAG+CGG - chr4_1:572041-572060 Msa0527910:intron 35.0%
!!! CCTCTCTTCCTGTTTTAATT+TGG + chr4_1:572086-572105 None:intergenic 35.0%
CCAAATTAAAACAGGAAGAG+AGG - chr4_1:572083-572102 Msa0527910:intron 35.0%
ATTGACAAGCTTCATAACCT+CGG + chr4_1:572424-572443 None:intergenic 35.0%
TAATGTATTCTGTTTCAGGC+AGG - chr4_1:572584-572603 Msa0527910:intron 35.0%
CATAATTAGTGTGACTTGAG+AGG + chr4_1:572836-572855 None:intergenic 35.0%
CTCTCAAGTCACACTAATTA+TGG - chr4_1:572834-572853 Msa0527910:intron 35.0%
CATATTAGCTATGATGCCAT+TGG + chr4_1:573159-573178 None:intergenic 35.0%
GGATCAGTGAAAAATGGAGA+AGG - chr4_1:568238-568257 Msa0527910:three_prime_UTR 40.0%
! AACTGTTGCGGATTTGGTTT+CGG + chr4_1:568281-568300 None:intergenic 40.0%
CAATCTCGCAATAACTGTTG+CGG + chr4_1:568293-568312 None:intergenic 40.0%
!! GAATGACATTGGTTCTGCAA+AGG - chr4_1:568520-568539 Msa0527910:CDS 40.0%
CGTTGGATGTGTTGTAATAC+TGG - chr4_1:568650-568669 Msa0527910:intron 40.0%
AGATCGTGGAAGTTATGCTT+AGG - chr4_1:568735-568754 Msa0527910:intron 40.0%
! CCAAGCCTTATCTCATTAAG+TGG + chr4_1:568959-568978 None:intergenic 40.0%
CCACTTAATGAGATAAGGCT+TGG - chr4_1:568956-568975 Msa0527910:intron 40.0%
! AATCACATGTGTCGATGTGT+CGG - chr4_1:568989-569008 Msa0527910:intron 40.0%
!! CCAACACCTGTTGTTTCAAA+AGG + chr4_1:569220-569239 None:intergenic 40.0%
!!! CCTTTTGAAACAACAGGTGT+TGG - chr4_1:569217-569236 Msa0527910:intron 40.0%
CTGTCTTTCTGCTGAATGTA+AGG - chr4_1:569265-569284 Msa0527910:intron 40.0%
TCTTTCTGCTGAATGTAAGG+TGG - chr4_1:569268-569287 Msa0527910:intron 40.0%
TGCTGAATGTAAGGTGGAAT+AGG - chr4_1:569274-569293 Msa0527910:intron 40.0%
GTGATCGGTCTTAACATGTA+TGG + chr4_1:569334-569353 None:intergenic 40.0%
GAATATGCCTTCAATTGGGT+AGG + chr4_1:569360-569379 None:intergenic 40.0%
CACCGAATATGCCTTCAATT+GGG + chr4_1:569364-569383 None:intergenic 40.0%
ACACCGAATATGCCTTCAAT+TGG + chr4_1:569365-569384 None:intergenic 40.0%
!! GTACTGGTGTATCACCTTTT+AGG - chr4_1:569504-569523 Msa0527910:intron 40.0%
CTACAGAACTTGTGAGATCT+AGG - chr4_1:569639-569658 Msa0527910:intron 40.0%
GAACCGTCTGCATGAAAATA+AGG - chr4_1:569670-569689 Msa0527910:intron 40.0%
!!! GTGCCTTATTTTCATGCAGA+CGG + chr4_1:569676-569695 None:intergenic 40.0%
!!! GAGAAAGTGTTGGTAGGTTT+TGG - chr4_1:569723-569742 Msa0527910:intron 40.0%
GTTTGCCTTAATTGTCCTCT+TGG - chr4_1:569755-569774 Msa0527910:intron 40.0%
ACACACCAAGAGGACAATTA+AGG + chr4_1:569763-569782 None:intergenic 40.0%
GTGCAAGTTTGATATCACAC+TGG + chr4_1:569895-569914 None:intergenic 40.0%
! ACGGTGGCTCACTATTATTT+TGG - chr4_1:569930-569949 Msa0527910:intron 40.0%
AGTATGTTTGGTATCGCAGT+GGG + chr4_1:569960-569979 None:intergenic 40.0%
ATGAAGCACAAGAGCTAACT+TGG + chr4_1:569999-570018 None:intergenic 40.0%
ATTCCACTTAGTCAACTGGA+GGG + chr4_1:570074-570093 None:intergenic 40.0%
TATTCCACTTAGTCAACTGG+AGG + chr4_1:570075-570094 None:intergenic 40.0%
TCCAGTTGACTAAGTGGAAT+AGG - chr4_1:570074-570093 Msa0527910:intron 40.0%
ACCTATTCCACTTAGTCAAC+TGG + chr4_1:570078-570097 None:intergenic 40.0%
TATACCTAGGGACAGGAAAA+GGG - chr4_1:570323-570342 Msa0527910:intron 40.0%
GCTAAAAGAGACCAAACAAG+AGG - chr4_1:570365-570384 Msa0527910:intron 40.0%
AACTGACTGTGATGTCTGTA+TGG - chr4_1:570442-570461 Msa0527910:intron 40.0%
CAACATAATTGTTCCACTCG+TGG - chr4_1:570469-570488 Msa0527910:intron 40.0%
!! TGGCACACAATCTTTAGGAT+AGG - chr4_1:570489-570508 Msa0527910:intron 40.0%
AACATGCTATAGCTAGGAAC+AGG - chr4_1:570518-570537 Msa0527910:intron 40.0%
CTATAGCTAGGAACAGGAAA+AGG - chr4_1:570524-570543 Msa0527910:intron 40.0%
GAAAAGGGTCTTAGCAAAAG+AGG - chr4_1:570540-570559 Msa0527910:intron 40.0%
CAAAAAGAGACCAACCTAGA+GGG - chr4_1:570568-570587 Msa0527910:intron 40.0%
AAAAAGAGACCAACCTAGAG+GGG - chr4_1:570569-570588 Msa0527910:intron 40.0%
TGTATAGCTAGGAACAGGAA+AGG - chr4_1:570615-570634 Msa0527910:intron 40.0%
GTATAGCTAGGAACAGGAAA+GGG - chr4_1:570616-570635 Msa0527910:intron 40.0%
AGCAAAAAGAACCAACCTAG+AGG - chr4_1:570657-570676 Msa0527910:intron 40.0%
GCAAAAAGAACCAACCTAGA+GGG - chr4_1:570658-570677 Msa0527910:intron 40.0%
CAAAAAGAACCAACCTAGAG+GGG - chr4_1:570659-570678 Msa0527910:intron 40.0%
! TAGCTTGTACAGGTCCATTT+GGG - chr4_1:570965-570984 Msa0527910:intron 40.0%
!! GGTGCTTATGCATGTTTTTG+GGG - chr4_1:571029-571048 Msa0527910:intron 40.0%
!!! GTGCTTATGCATGTTTTTGG+GGG - chr4_1:571030-571049 Msa0527910:intron 40.0%
! GGGGAGCTTATTGAAAGTAT+TGG - chr4_1:571049-571068 Msa0527910:intron 40.0%
! AATAGCTTGTACGAAGCTCA+TGG - chr4_1:571110-571129 Msa0527910:intron 40.0%
TTTACAATGGCGGCTATACA+GGG - chr4_1:571294-571313 Msa0527910:intron 40.0%
TGCGTACAATACACAAATGG+TGG - chr4_1:571323-571342 Msa0527910:intron 40.0%
GCGTACAATACACAAATGGT+GGG - chr4_1:571324-571343 Msa0527910:intron 40.0%
CCCTTGTCAATGTCATTCTA+TGG + chr4_1:571455-571474 None:intergenic 40.0%
GTAGGTAAGAAGCCTTTGAT+AGG - chr4_1:571531-571550 Msa0527910:CDS 40.0%
TGAATGTGGAAGCCTATCAA+AGG + chr4_1:571546-571565 None:intergenic 40.0%
! GAGAGGAAATTGGAAGTATG+TGG - chr4_1:571672-571691 Msa0527910:intron 40.0%
TATGTGGTCATGTAGAGACT+AGG - chr4_1:571688-571707 Msa0527910:intron 40.0%
ATGTGGTCATGTAGAGACTA+GGG - chr4_1:571689-571708 Msa0527910:intron 40.0%
CTAAAAATGCACCACAAAGG+AGG + chr4_1:572011-572030 None:intergenic 40.0%
! CTCCTTTGTGGTGCATTTTT+AGG - chr4_1:572009-572028 Msa0527910:intron 40.0%
AGTGAGGGCCAAATTAAAAC+AGG - chr4_1:572075-572094 Msa0527910:intron 40.0%
CTGAAAAGGCAGCCAAAATT+AGG + chr4_1:572365-572384 None:intergenic 40.0%
AGTACGAGCAATTGCTGAAA+AGG + chr4_1:572379-572398 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG - chr4_1:572434-572453 Msa0527910:intron 40.0%
GTTCAGCAAAGAAATGACCA+AGG - chr4_1:572485-572504 Msa0527910:intron 40.0%
! TGAAGTATGAAGGCATACCT+TGG + chr4_1:572505-572524 None:intergenic 40.0%
GCAGGAGAAATGAAGTATGA+AGG + chr4_1:572515-572534 None:intergenic 40.0%
TGACTCAGCATTAGATTCTG+AGG - chr4_1:572637-572656 Msa0527910:intron 40.0%
!! TTTTGTTTCCTCACAGCTTC+AGG + chr4_1:572737-572756 None:intergenic 40.0%
TGAAGCTGTGAGGAAACAAA+AGG - chr4_1:572736-572755 Msa0527910:CDS 40.0%
!! GCAAAAAGAGCCTTGTTAAC+AGG + chr4_1:572812-572831 None:intergenic 40.0%
TTCTTCATCATCAACACCCT+CGG + chr4_1:572892-572911 None:intergenic 40.0%
CGCAATAACTGTTGCGGATT+TGG + chr4_1:568287-568306 None:intergenic 45.0%
CGCAACAGTTATTGCGAGAT+TGG - chr4_1:568291-568310 Msa0527910:exon 45.0%
GCTGCTAAGAGGAATGACAT+TGG - chr4_1:568509-568528 Msa0527910:CDS 45.0%
ATCTGTCACTGACACCGATA+CGG - chr4_1:568566-568585 Msa0527910:CDS 45.0%
TGGAGATGAGAAAGTTGCGT+TGG - chr4_1:568633-568652 Msa0527910:CDS 45.0%
CGACATTAGAGAGAGAGATC+AGG - chr4_1:568694-568713 Msa0527910:intron 45.0%
TCGTGGAAGTTATGCTTAGG+TGG - chr4_1:568738-568757 Msa0527910:intron 45.0%
GAGGATAGTCAGATCACTAG+AGG - chr4_1:568818-568837 Msa0527910:CDS 45.0%
! GCACTGACAGTTCTAATCGA+AGG + chr4_1:569064-569083 None:intergenic 45.0%
CAATTGGGTAGGACTGTGAT+CGG + chr4_1:569349-569368 None:intergenic 45.0%
TCACAGTCCTACCCAATTGA+AGG - chr4_1:569350-569369 Msa0527910:intron 45.0%
!! CATATTCGGTGTCAGACATG+TGG - chr4_1:569373-569392 Msa0527910:intron 45.0%
GCTCTGACACACACAAAAAC+AGG + chr4_1:569458-569477 None:intergenic 45.0%
! ATGCACCTTGGAGAAAGTGT+TGG - chr4_1:569713-569732 Msa0527910:intron 45.0%
!! ACCTTGGAGAAAGTGTTGGT+AGG - chr4_1:569717-569736 Msa0527910:intron 45.0%
ACCTACCAACACTTTCTCCA+AGG + chr4_1:569721-569740 None:intergenic 45.0%
! ATTGTCCTCTTGGTGTGTGT+TGG - chr4_1:569765-569784 Msa0527910:intron 45.0%
GATATCCAACACACACCAAG+AGG + chr4_1:569773-569792 None:intergenic 45.0%
GTGTGTGTTGGATATCACGA+TGG - chr4_1:569777-569796 Msa0527910:intron 45.0%
GTGCATGTTTGGTATCACAG+TGG - chr4_1:569849-569868 Msa0527910:intron 45.0%
!! ACACTGGTTTGCTAGACTCA+CGG + chr4_1:569879-569898 None:intergenic 45.0%
GAGTATGTTTGGTATCGCAG+TGG + chr4_1:569961-569980 None:intergenic 45.0%
AGAGACTGTGTGCAAAGAGT+GGG + chr4_1:570280-570299 None:intergenic 45.0%
TAGAGACTGTGTGCAAAGAG+TGG + chr4_1:570281-570300 None:intergenic 45.0%
ACTCTTTGCACACAGTCTCT+AGG - chr4_1:570280-570299 Msa0527910:intron 45.0%
!! TTGCACACAGTCTCTAGGAT+TGG - chr4_1:570285-570304 Msa0527910:intron 45.0%
CTATACCTAGGGACAGGAAA+AGG - chr4_1:570322-570341 Msa0527910:intron 45.0%
GAAAAGGGTCTTAGCGAAAG+AGG - chr4_1:570338-570357 Msa0527910:intron 45.0%
TAAAGATTGTGTGCCACGAG+TGG + chr4_1:570485-570504 None:intergenic 45.0%
ACTCGTGGCACACAATCTTT+AGG - chr4_1:570484-570503 Msa0527910:intron 45.0%
GCAAAAAGAGACCAACCTAG+AGG - chr4_1:570567-570586 Msa0527910:intron 45.0%
GGAAAGGGTCTTAGCAAAAG+AGG - chr4_1:570631-570650 Msa0527910:intron 45.0%
GCTGTGTGCACTTAACATGA+TGG - chr4_1:570591-570610 Msa0527910:intron 45.0%
ACCAATCTCCAGCTCGTATA+TGG - chr4_1:570734-570753 Msa0527910:intron 45.0%
CCAATCTCCAGCTCGTATAT+GGG - chr4_1:570735-570754 Msa0527910:intron 45.0%
CAATCTCCAGCTCGTATATG+GGG - chr4_1:570736-570755 Msa0527910:intron 45.0%
! TTCTAAAGACTGAGCTCCTG+AGG - chr4_1:570822-570841 Msa0527910:intron 45.0%
! GAGGCATTCTGGGTTCATTT+GGG - chr4_1:570919-570938 Msa0527910:intron 45.0%
CATTCTGGGTTCATTTGGGT+TGG - chr4_1:570923-570942 Msa0527910:intron 45.0%
! AGCTACTCATGGACTACTCA+TGG + chr4_1:570950-570969 None:intergenic 45.0%
! AGTCCATGAGTAGCTTGTAC+AGG - chr4_1:570955-570974 Msa0527910:intron 45.0%
! GTAGCTTGTACAGGTCCATT+TGG - chr4_1:570964-570983 Msa0527910:intron 45.0%
TTGTACAGGTCCATTTGGGT+TGG - chr4_1:570969-570988 Msa0527910:intron 45.0%
TACTCATGGACCAACCCAAA+TGG + chr4_1:570936-570955 None:intergenic 45.0%
GGTCCATGAGTAGCTTATTC+AGG - chr4_1:570990-571009 Msa0527910:intron 45.0%
ACGCCTGAATAAGCTACTCA+TGG + chr4_1:570996-571015 None:intergenic 45.0%
CTTTACAATGGCGGCTATAC+AGG - chr4_1:571293-571312 Msa0527910:intron 45.0%
GGCTGCGTACAATACACAAA+TGG - chr4_1:571320-571339 Msa0527910:intron 45.0%
AGAATAAGTCAGTAAGGGGC+AGG - chr4_1:571571-571590 Msa0527910:CDS 45.0%
GAATAAGTCAGTAAGGGGCA+GGG - chr4_1:571572-571591 Msa0527910:CDS 45.0%
GTAATAGTTGTGGGTAGCAG+AGG - chr4_1:571627-571646 Msa0527910:intron 45.0%
AGCGGTTTACAAGTCAAGTG+AGG - chr4_1:572059-572078 Msa0527910:intron 45.0%
GCGGTTTACAAGTCAAGTGA+GGG - chr4_1:572060-572079 Msa0527910:intron 45.0%
AAAACAGGAAGAGAGGGGAA+AGG - chr4_1:572090-572109 Msa0527910:intron 45.0%
AAACAGGAAGAGAGGGGAAA+GGG - chr4_1:572091-572110 Msa0527910:intron 45.0%
TGGCTAAGTCATGCATTGTC+TGG - chr4_1:572128-572147 Msa0527910:intron 45.0%
TTCAGCAATTGCTCGTACTG+TGG - chr4_1:572380-572399 Msa0527910:intron 45.0%
TCAGCAATTGCTCGTACTGT+GGG - chr4_1:572381-572400 Msa0527910:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG - chr4_1:572404-572423 Msa0527910:intron 45.0%
TGCATAGCAACAGCCATTTC+AGG + chr4_1:572462-572481 None:intergenic 45.0%
GTTTCAGGCAGGAGTAATTG+AGG - chr4_1:572595-572614 Msa0527910:intron 45.0%
TATATCAGGGCACAATGCAG+AGG + chr4_1:573066-573085 None:intergenic 45.0%
!! TTATATATACAAAATAAAAT+GGG + chr4_1:568213-568232 None:intergenic 5.0%
!! ATTATATATACAAAATAAAA+TGG + chr4_1:568214-568233 None:intergenic 5.0%
!!! TTATTTTGTATATATAATTT+TGG - chr4_1:568216-568235 Msa0527910:three_prime_UTR 5.0%
!!! TATTTTGTATATATAATTTT+GGG - chr4_1:568217-568236 Msa0527910:three_prime_UTR 5.0%
! AGGTGGGTGTGTTGTTCGTA+AGG - chr4_1:568049-568068 Msa0527910:three_prime_UTR 50.0%
! GACAGTTCTAATCGAAGGCG+TGG + chr4_1:569059-569078 None:intergenic 50.0%
CAACACTAACACGTCAACGC+TGG + chr4_1:569432-569451 None:intergenic 50.0%
ACTCCCTCCAGTTGACTAAG+TGG - chr4_1:570068-570087 Msa0527910:intron 50.0%
CATGTGCTATACCTAGGGAC+AGG - chr4_1:570316-570335 Msa0527910:intron 50.0%
! AAGACCCTTTTCCTGTCCCT+AGG + chr4_1:570330-570349 None:intergenic 50.0%
AGGGTCTTAGCGAAAGAGGT+AGG - chr4_1:570342-570361 Msa0527910:intron 50.0%
GGGTCTTAGCGAAAGAGGTA+GGG - chr4_1:570343-570362 Msa0527910:intron 50.0%
CCCATATACGAGCTGGAGAT+TGG + chr4_1:570738-570757 None:intergenic 50.0%
TCCAGCTCGTATATGGGGAA+GGG - chr4_1:570741-570760 Msa0527910:intron 50.0%
TCGTATATGGGGAAGGGGAA+TGG - chr4_1:570747-570766 Msa0527910:intron 50.0%
CGTATATGGGGAAGGGGAAT+GGG - chr4_1:570748-570767 Msa0527910:intron 50.0%
GTATATGGGGAAGGGGAATG+GGG - chr4_1:570749-570768 Msa0527910:intron 50.0%
CAGATGCTCACCCATGACTA+AGG + chr4_1:570801-570820 None:intergenic 50.0%
! CGAGGCATTCTGGGTTCATT+TGG - chr4_1:570918-570937 Msa0527910:intron 50.0%
GGACCTGTACAAGCTACTCA+TGG + chr4_1:570961-570980 None:intergenic 50.0%
GCTTCGTACAAGCTATTCCC+TGG + chr4_1:571107-571126 None:intergenic 50.0%
AATGGCGGCTATACAGGGTA+AGG - chr4_1:571299-571318 Msa0527910:intron 50.0%
!! GGCGGCTATATTGGTTTGTC+TGG - chr4_1:571402-571421 Msa0527910:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG + chr4_1:572449-572468 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG - chr4_1:572446-572465 Msa0527910:intron 50.0%
ACTTCTATGACTACGGGGAG+AGG + chr4_1:572543-572562 None:intergenic 50.0%
CCTCACAGCTTCAGGAAGTT+GGG + chr4_1:572729-572748 None:intergenic 50.0%
TCCTCACAGCTTCAGGAAGT+TGG + chr4_1:572730-572749 None:intergenic 50.0%
AACTGCATGTACCTCCTCTG+CGG + chr4_1:572783-572802 None:intergenic 50.0%
CAGGAAGATGCTATAGCCGA+GGG - chr4_1:572873-572892 Msa0527910:intron 50.0%
TGACCTGACTTTAGCGAGTC+TGG + chr4_1:572934-572953 None:intergenic 50.0%
GGTGAGTGTCAGTGCCGTAT+CGG + chr4_1:568583-568602 None:intergenic 55.0%
! GTTCTAATCGAAGGCGTGGC+TGG + chr4_1:569055-569074 None:intergenic 55.0%
TCGCAGAAGCCCCTCTTGTT+TGG + chr4_1:570379-570398 None:intergenic 55.0%
GGGGCTTCTGCGACTTTCTA+TGG - chr4_1:570386-570405 Msa0527910:intron 55.0%
TAAGTGCACACAGCCCCTCT+AGG + chr4_1:570585-570604 None:intergenic 55.0%
TAAGTGCACACAGCCCCTCT+AGG + chr4_1:570585-570604 None:intergenic 55.0%
CTCCAGCTCGTATATGGGGA+AGG - chr4_1:570740-570759 Msa0527910:intron 55.0%
CCAGCTCGTATATGGGGAAG+GGG - chr4_1:570742-570761 Msa0527910:intron 55.0%
ACAGGATGGGCACGACCTAT+AGG - chr4_1:571163-571182 Msa0527910:intron 55.0%
! TACACAAATGGTGGGACCCC+TGG - chr4_1:571332-571351 Msa0527910:intron 55.0%
AGAGCTCCCGCATATGTCCA+GGG + chr4_1:571352-571371 None:intergenic 55.0%
TAGAGCTCCCGCATATGTCC+AGG + chr4_1:571353-571372 None:intergenic 55.0%
! ATGCGGGAGCTCTAATGCAC+CGG - chr4_1:571359-571378 Msa0527910:intron 55.0%
!! AAGAGAGGGGAAAGGGTGCT+TGG - chr4_1:572098-572117 Msa0527910:intron 55.0%
!! AGAGAGGGGAAAGGGTGCTT+GGG - chr4_1:572099-572118 Msa0527910:intron 55.0%
!! AAAGGGTGCTTGGGGGTAAC+TGG - chr4_1:572108-572127 Msa0527910:intron 55.0%
CACAGCTTCAGGAAGTTGGG+CGG + chr4_1:572726-572745 None:intergenic 55.0%
CCCAACTTCCTGAAGCTGTG+AGG - chr4_1:572726-572745 Msa0527910:CDS 55.0%
GCAGGAAGATGCTATAGCCG+AGG - chr4_1:572872-572891 Msa0527910:intron 55.0%
TGCACACAGCCCCTCTAGGT+TGG + chr4_1:570581-570600 None:intergenic 60.0%
TGCACACAGCCCCTCTAGGT+TGG + chr4_1:570581-570600 None:intergenic 60.0%
CCCCTTCCCCATATACGAGC+TGG + chr4_1:570745-570764 None:intergenic 60.0%
GTGGGACCCCTGGACATATG+CGG - chr4_1:571342-571361 Msa0527910:intron 60.0%
TGGGACCCCTGGACATATGC+GGG - chr4_1:571343-571362 Msa0527910:intron 60.0%
GAGCTCCCGCATATGTCCAG+GGG + chr4_1:571351-571370 None:intergenic 60.0%
! TGCGGGAGCTCTAATGCACC+GGG - chr4_1:571360-571379 Msa0527910:intron 60.0%
!! GAGAGGGGAAAGGGTGCTTG+GGG - chr4_1:572100-572119 Msa0527910:intron 60.0%
!! AGAGGGGAAAGGGTGCTTGG+GGG - chr4_1:572101-572120 Msa0527910:intron 60.0%
!! ACCTGCTCAAAGTGCCGCAG+AGG - chr4_1:572766-572785 Msa0527910:CDS 60.0%
TCCTCTGCGGCACTTTGAGC+AGG + chr4_1:572770-572789 None:intergenic 60.0%
!! TGCTCAAAGTGCCGCAGAGG+AGG - chr4_1:572769-572788 Msa0527910:CDS 60.0%
GGGCCAGACTCGCTAAAGTC+AGG - chr4_1:572928-572947 Msa0527910:CDS 60.0%
CTACGGGGAGAGGAGAGAGC+AGG + chr4_1:572533-572552 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 568013 573242 568013 ID=Msa0527910;Name=Msa0527910
chr4_1 mRNA 568013 573242 568013 ID=Msa0527910-mRNA-1;Parent=Msa0527910;Name=Msa0527910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=238|1|1|1|1|1|6|286|227
chr4_1 exon 568013 568379 568013 ID=Msa0527910-mRNA-1:exon:92;Parent=Msa0527910-mRNA-1
chr4_1 exon 568465 568653 568465 ID=Msa0527910-mRNA-1:exon:91;Parent=Msa0527910-mRNA-1
chr4_1 exon 568749 568870 568749 ID=Msa0527910-mRNA-1:exon:90;Parent=Msa0527910-mRNA-1
chr4_1 exon 571521 571623 571521 ID=Msa0527910-mRNA-1:exon:89;Parent=Msa0527910-mRNA-1
chr4_1 exon 572714 572790 572714 ID=Msa0527910-mRNA-1:exon:88;Parent=Msa0527910-mRNA-1
chr4_1 exon 572893 573242 572893 ID=Msa0527910-mRNA-1:exon:87;Parent=Msa0527910-mRNA-1
chr4_1 five_prime_UTR 573005 573242 573005 ID=Msa0527910-mRNA-1:five_prime_utr;Parent=Msa0527910-mRNA-1
chr4_1 CDS 572893 573004 572893 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 CDS 572714 572790 572714 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 CDS 571521 571623 571521 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 CDS 568749 568870 568749 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 CDS 568465 568653 568465 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 CDS 568299 568379 568299 ID=Msa0527910-mRNA-1:cds;Parent=Msa0527910-mRNA-1
chr4_1 three_prime_UTR 568013 568298 568013 ID=Msa0527910-mRNA-1:three_prime_utr;Parent=Msa0527910-mRNA-1
Gene Sequence

>Msa0527910

ATGGAGAAGGTGATGAACATTCTGAAACCGAAACCAAATCCGCAACAGTTATTGCGAGATTGGCAACGTAAGCTTCGACAAGAGTGTCGAAACATTGAACGACAAATTCGCGATATTCAGAGAGAGGAGAAAAATGTGCAGAAAGCTATTAAAGAAGCTGCTAAGAGGAATGACATTGGTTCTGCAAAGGCACTCGCTACAGAACTTGTGAGATCTAGGAAAACAGTGAACCGTCTGCATGAAAATAAGGCACAACTGAACTCAATATCAATGCACCTTGGAGAAAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCCGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAATGGCTGTTGCTATGCAAGAGTTCAGCAAAGAAATGACCAAGGCAGGAGTAATTGAGGAGATAGTAAACGATGCTGTTGACTCAGCATTAGATTCTGAGGACATAGAAGATGAAATAGATGAAGAAGTTGATAAAGTCTTAACTGAATTAGCTGGTGAGACAGCCGCCCAACTTCCTGAAGCTGTGAGGAAACAAAAGGTGAAGCAACCTGCTCAAAGTGCCGCAGAGGAGGAAGATGCTATAGCCGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATTAGGGCCAGACTCGCTAAAGTCAGGTCATAA

Protein sequence

>Msa0527910

MEKVMNILKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDIGSAKALATELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIDEEVDKVLTELAGETAAQLPEAVRKQKVKQPAQSAAEEEDAIAEGVDDEEEMEEIRARLAKVRS*