AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317270 MtrunA17_Chr8g0347511 98.624 218 3 0 1 218 1 218 1.45e-153 424
Msa1317270 MtrunA17_Chr8g0376831 53.906 128 57 2 1 127 1 127 3.56e-41 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317270 AT5G12230.1 63.677 223 74 3 1 218 1 221 1.60e-61 192
Msa1317270 AT5G19480.3 60.465 215 76 3 1 214 1 207 1.00e-56 179
Msa1317270 AT5G19480.2 60.465 215 76 3 1 214 1 207 1.00e-56 179
Msa1317270 AT5G19480.1 60.465 215 76 3 1 214 1 207 1.00e-56 179
Msa1317270 AT5G19480.4 60.465 215 76 3 1 214 1 207 1.00e-56 179

Find 80 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCCGTCAGTAATATT+AGG 0.186367 8_4:+18451305 None:intergenic
TGGTTAATTTGTAAACTATA+TGG 0.188175 8_4:-18451345 Msa1317270:three_prime_UTR
TTTCTTCTTCTTTCACTGTT+TGG 0.231758 8_4:-18457297 Msa1317270:five_prime_UTR
CCACCAAATCTTCTTCAAAT+TGG 0.244928 8_4:+18457048 None:intergenic
ATCCGTCGATGTTAAATAAA+TGG 0.256523 8_4:+18451379 None:intergenic
TCAATCCGTCAGTAATATTA+GGG 0.315487 8_4:+18451306 None:intergenic
AAGAAGAAGAAAGGGATTAA+AGG 0.326969 8_4:+18457308 None:intergenic
AGGATAACTGAAATAACTAT+TGG 0.351103 8_4:-18451438 Msa1317270:three_prime_UTR
AATATCCGACAGCTTTAATC+AGG 0.351473 8_4:-18455662 Msa1317270:intron
GGATAACTGAAATAACTATT+GGG 0.353682 8_4:-18451437 Msa1317270:three_prime_UTR
TGGGAGCTGTTTCCCTTAGT+TGG 0.360962 8_4:+18454878 None:intergenic
GTGCCAATTTGAAGAAGATT+TGG 0.365687 8_4:-18457051 Msa1317270:five_prime_UTR
TCGACGGATGGATCTGTATA+TGG 0.369119 8_4:-18451365 Msa1317270:three_prime_UTR
AGAAGAAGAAAGGGATTAAA+GGG 0.373158 8_4:+18457309 None:intergenic
AGCTCAAGAATTGACGAGTT+GGG 0.383174 8_4:-18453783 Msa1317270:CDS
ATCCATGATTCAATCTTTCA+TGG 0.391592 8_4:+18455622 None:intergenic
GGTTAATTTGTAAACTATAT+GGG 0.393345 8_4:-18451344 Msa1317270:three_prime_UTR
AATCTTTGTGTTTGTTCCTT+CGG 0.399112 8_4:+18457386 None:intergenic
AGCATAAGAAGCACAAAGAC+AGG 0.416670 8_4:-18454631 Msa1317270:CDS
AAAAGGAGATGGCATGCAAT+TGG 0.425102 8_4:-18454986 Msa1317270:CDS
TCGATGTTAAATAAATGGTA+TGG 0.441642 8_4:+18451384 None:intergenic
AAAGGAATACCAACAATTGC+AGG 0.443447 8_4:-18454686 Msa1317270:CDS
CTTTGTTGAGGTTTCAGTGT+TGG 0.445650 8_4:+18457360 None:intergenic
TCAAGGAGGCTTTCCAACTA+AGG 0.463128 8_4:-18454891 Msa1317270:CDS
AAACAGTGAAAGAAGAAGAA+AGG 0.465344 8_4:+18457299 None:intergenic
TTTCTTTGAGTGATCAGCAC+TGG 0.470774 8_4:+18454502 None:intergenic
TCAAGAAATCTGAAAATGTC+AGG 0.479687 8_4:+18453666 None:intergenic
GGAGACACAGAAATAAGAAA+AGG 0.481443 8_4:-18455003 Msa1317270:CDS
TTTCCCTAATAGGCGGAGAA+AGG 0.487140 8_4:-18454704 Msa1317270:intron
ACAGGGATAAGGACAAGGAC+AGG 0.491569 8_4:-18454613 Msa1317270:CDS
AACAGTGAAAGAAGAAGAAA+GGG 0.492849 8_4:+18457300 None:intergenic
AATTCACCTGATGGTGGAAA+AGG 0.493016 8_4:-18451689 Msa1317270:three_prime_UTR
CACTACCTGCACAGTGTAGT+AGG 0.493509 8_4:-18455024 Msa1317270:CDS
TACCATTTATTTAACATCGA+CGG 0.498638 8_4:-18451381 Msa1317270:three_prime_UTR
CTCAAAGAAACATCATGAAA+AGG 0.506069 8_4:-18454489 Msa1317270:intron
AACCATGAAAGATTGAATCA+TGG 0.511783 8_4:-18455624 Msa1317270:exon
ATCATGATAATCTTATAGTC+AGG 0.516918 8_4:+18451716 None:intergenic
TCGGATACAGCCTTTCGACT+TGG 0.517841 8_4:-18454920 Msa1317270:CDS
TCCGCGATTGACACAGGAAG+CGG 0.522644 8_4:+18455051 None:intergenic
GAGCTCAAGAATTGACGAGT+TGG 0.523968 8_4:-18453784 Msa1317270:CDS
TAAAGGAAAGATCTTTGTTG+AGG 0.528082 8_4:+18457348 None:intergenic
CCAATTTGAAGAAGATTTGG+TGG 0.531981 8_4:-18457048 Msa1317270:five_prime_UTR
GCTCAAGAATTGACGAGTTG+GGG 0.539950 8_4:-18453782 Msa1317270:CDS
CGATGTTAAATAAATGGTAT+GGG 0.542155 8_4:+18451385 None:intergenic
GAAGCACAAAGACAGGGATA+AGG 0.543181 8_4:-18454624 Msa1317270:CDS
TCAGGACCGAGGGAGTTGAC+AGG 0.545339 8_4:-18455135 Msa1317270:intron
TGACTATAAGATTATCATGA+TGG 0.546672 8_4:-18451714 Msa1317270:three_prime_UTR
TTTCGACTTGGATGTACTCA+AGG 0.556675 8_4:-18454908 Msa1317270:CDS
CAAATGACAACAACCAATTG+AGG 0.561634 8_4:+18453708 None:intergenic
AATTTGTAAACTATATGGGA+TGG 0.568096 8_4:-18451340 Msa1317270:three_prime_UTR
CAAGGAGGCTTTCCAACTAA+GGG 0.568109 8_4:-18454890 Msa1317270:CDS
TCTTACAGCAGGCAAATCGA+TGG 0.570777 8_4:+18454858 None:intergenic
CTGATGGTGGAAAAGGAAGC+AGG 0.572261 8_4:-18451682 Msa1317270:intron
GATAACTGAAATAACTATTG+GGG 0.573323 8_4:-18451436 Msa1317270:three_prime_UTR
TCACGCCCTAATATTACTGA+CGG 0.582690 8_4:-18451311 Msa1317270:three_prime_UTR
CTTACAGCAGGCAAATCGAT+GGG 0.583764 8_4:+18454859 None:intergenic
TGTGTGTCCGCGATTGACAC+AGG 0.584301 8_4:+18455045 None:intergenic
ATTTATTTAACATCGACGGA+TGG 0.584542 8_4:-18451377 Msa1317270:three_prime_UTR
ACAGCACCTGTCAACTCCCT+CGG 0.592323 8_4:+18455129 None:intergenic
TGTCTCCTACTACACTGTGC+AGG 0.593991 8_4:+18455019 None:intergenic
TTGTTGTCATTTGTATGTGA+AGG 0.602533 8_4:-18453698 Msa1317270:three_prime_UTR
GCATAAGAAGCACAAAGACA+GGG 0.602938 8_4:-18454630 Msa1317270:CDS
GAGGGAGTTGACAGGTGCTG+TGG 0.611611 8_4:-18455127 Msa1317270:CDS
ACAGCTTTAATCAGGTTCTG+TGG 0.612867 8_4:-18455654 Msa1317270:intron
GATTGAATCATGGATCCTGA+AGG 0.613845 8_4:-18455614 Msa1317270:exon
ACAGAAATAAGAAAAGGAGA+TGG 0.615049 8_4:-18454997 Msa1317270:CDS
CAAAGACAGGGATAAGGACA+AGG 0.620436 8_4:-18454618 Msa1317270:CDS
GCCGCTTCCTGTGTCAATCG+CGG 0.625354 8_4:-18455052 Msa1317270:CDS
TTGAGTACATCCAAGTCGAA+AGG 0.626076 8_4:+18454910 None:intergenic
CAGGGATAAGGACAAGGACA+GGG 0.626401 8_4:-18454612 Msa1317270:CDS
CAGAAGCAAAGACAAAGACA+AGG 0.629036 8_4:-18454558 Msa1317270:CDS
CGACTTGGATGTACTCAAGG+AGG 0.638306 8_4:-18454905 Msa1317270:CDS
ATAACTGAAATAACTATTGG+GGG 0.648226 8_4:-18451435 Msa1317270:three_prime_UTR
TCTCAAGAGAGACAAGTGCT+CGG 0.651092 8_4:-18454939 Msa1317270:CDS
TTTCAGAAGAGGAAGCATGA+CGG 0.652327 8_4:-18453990 Msa1317270:intron
CTCAAGAATTGACGAGTTGG+GGG 0.663578 8_4:-18453781 Msa1317270:CDS
ATGGTGAATTCACCTGATGG+TGG 0.663661 8_4:-18451695 Msa1317270:three_prime_UTR
GAAGCACAAACATCGTCACA+AGG 0.684990 8_4:-18454582 Msa1317270:CDS
ATGATGGTGAATTCACCTGA+TGG 0.706691 8_4:-18451698 Msa1317270:three_prime_UTR
ACAATCACGAGTACTACCGA+AGG 0.714721 8_4:-18457402 Msa1317270:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTCAAATTATTAC+CGG - chr8_4:18452504-18452523 Msa1317270:intron 10.0%
!! GAATTTATTATAATAATTTG+GGG + chr8_4:18456838-18456857 None:intergenic 10.0%
!! GTGAATTTATTATAATAATT+TGG + chr8_4:18456840-18456859 None:intergenic 10.0%
!! TTATGTATTCATTGAAAATT+TGG + chr8_4:18451568-18451587 None:intergenic 15.0%
!! TTACAATTTATATCATCTAA+AGG - chr8_4:18452185-18452204 Msa1317270:intron 15.0%
!! ACCATATAAAAATCATAATT+TGG + chr8_4:18453046-18453065 None:intergenic 15.0%
!! GAACATTTACAAAATTATTA+GGG + chr8_4:18453090-18453109 None:intergenic 15.0%
!! AGAACATTTACAAAATTATT+AGG + chr8_4:18453091-18453110 None:intergenic 15.0%
!!! CATAAAGATTTTATAGAATT+AGG + chr8_4:18453247-18453266 None:intergenic 15.0%
!!! TTAAATTTTTTGGAATTGAA+TGG - chr8_4:18453449-18453468 Msa1317270:intron 15.0%
!! AGAGAAAAAATTAAAAATTG+TGG + chr8_4:18455160-18455179 None:intergenic 15.0%
!! TCAATTTCAAATTTAATTGT+TGG - chr8_4:18455531-18455550 Msa1317270:intron 15.0%
!! CAATTTCAAATTTAATTGTT+GGG - chr8_4:18455532-18455551 Msa1317270:intron 15.0%
!! AATTTCAAATTTAATTGTTG+GGG - chr8_4:18455533-18455552 Msa1317270:intron 15.0%
!! GTTCTCACAAAAATATATAA+AGG + chr8_4:18451454-18451473 None:intergenic 20.0%
!! AGTCAAGAATAACAATAAAA+AGG + chr8_4:18451599-18451618 None:intergenic 20.0%
!!! TTTTGAAGTTGGAATTTTTT+AGG - chr8_4:18451819-18451838 Msa1317270:intron 20.0%
!!! TTTGAAGTTGGAATTTTTTA+GGG - chr8_4:18451820-18451839 Msa1317270:intron 20.0%
!!! TATTAATGTGAAGAAGATTT+TGG - chr8_4:18451868-18451887 Msa1317270:intron 20.0%
!!! TGTTAATTTTTTTTGAACGT+TGG - chr8_4:18451953-18451972 Msa1317270:intron 20.0%
!! TGAATATTTAACAATCTTCA+AGG - chr8_4:18451979-18451998 Msa1317270:intron 20.0%
!! TCAGTTTCATATAATCAATA+GGG + chr8_4:18452154-18452173 None:intergenic 20.0%
!! TTCAGTTTCATATAATCAAT+AGG + chr8_4:18452155-18452174 None:intergenic 20.0%
!! AAGTTATCAACTATATTCTT+TGG - chr8_4:18452357-18452376 Msa1317270:intron 20.0%
!! AGTTATCAACTATATTCTTT+GGG - chr8_4:18452358-18452377 Msa1317270:intron 20.0%
!! TATTTCAATTTCTCGAAATA+TGG - chr8_4:18452633-18452652 Msa1317270:intron 20.0%
!! AATATGGAGAAAAAAAAATG+AGG - chr8_4:18452649-18452668 Msa1317270:intron 20.0%
!!! TAGTTAGTTTGTTTAAGTTT+TGG - chr8_4:18452884-18452903 Msa1317270:intron 20.0%
!!! AGTTAGTTTGTTTAAGTTTT+GGG - chr8_4:18452885-18452904 Msa1317270:intron 20.0%
!! AAGTATTTATGTAACTTTGT+TGG - chr8_4:18453010-18453029 Msa1317270:intron 20.0%
!!! GCCAAATTATGATTTTTATA+TGG - chr8_4:18453042-18453061 Msa1317270:intron 20.0%
!!! TTATCACCTGTTAAATTTTT+TGG - chr8_4:18453439-18453458 Msa1317270:intron 20.0%
!! TCAATTCCAAAAAATTTAAC+AGG + chr8_4:18453448-18453467 None:intergenic 20.0%
!!! TATTGTGCAAACTTTAAAAA+GGG + chr8_4:18453541-18453560 None:intergenic 20.0%
!!! CATAATATTTTGTGCTAAAT+AGG + chr8_4:18454595-18454614 None:intergenic 20.0%
!! TTATGAAATAACAGTTATAG+CGG - chr8_4:18454610-18454629 Msa1317270:CDS 20.0%
!!! TTTGAACAAACATCTATTTT+CGG - chr8_4:18454659-18454678 Msa1317270:CDS 20.0%
!!! ATTCTTTTTTGGAGTTTTAA+CGG - chr8_4:18455202-18455221 Msa1317270:intron 20.0%
!! TTGCAAATAAAAGCAATTAA+GGG + chr8_4:18455232-18455251 None:intergenic 20.0%
!! TTTGCAAATAAAAGCAATTA+AGG + chr8_4:18455233-18455252 None:intergenic 20.0%
!! AAAAGGAAAAAAATCAATCA+GGG + chr8_4:18455688-18455707 None:intergenic 20.0%
!! TAAAAGGAAAAAAATCAATC+AGG + chr8_4:18455689-18455708 None:intergenic 20.0%
!! AAATGTTGCCAATAAATAAA+AGG - chr8_4:18455844-18455863 Msa1317270:intron 20.0%
!! AATGTTGCCAATAAATAAAA+GGG - chr8_4:18455845-18455864 Msa1317270:intron 20.0%
!! TTATGAGCAATATAAAATGT+TGG - chr8_4:18456578-18456597 Msa1317270:intron 20.0%
!!! CAATCTATTTTATAGTCAAA+AGG - chr8_4:18456753-18456772 Msa1317270:intron 20.0%
!!! ATTTTATCACAGCATAATAA+GGG + chr8_4:18456788-18456807 None:intergenic 20.0%
!!! TATTTTATCACAGCATAATA+AGG + chr8_4:18456789-18456808 None:intergenic 20.0%
!! TTATTATAATAATTTGGGGA+GGG + chr8_4:18456834-18456853 None:intergenic 20.0%
!! TTTATTATAATAATTTGGGG+AGG + chr8_4:18456835-18456854 None:intergenic 20.0%
!! TTATTATAATAAATTCACCC+TGG - chr8_4:18456842-18456861 Msa1317270:intron 20.0%
!! TATTATAATAAATTCACCCT+GGG - chr8_4:18456843-18456862 Msa1317270:intron 20.0%
!!! TGGTTAATTTGTAAACTATA+TGG - chr8_4:18457437-18457456 Msa1317270:five_prime_UTR 20.0%
!!! GGTTAATTTGTAAACTATAT+GGG - chr8_4:18457438-18457457 Msa1317270:five_prime_UTR 20.0%
! TTTACACACTATATCTATCA+TGG - chr8_4:18451534-18451553 Msa1317270:three_prime_UTR 25.0%
! TTACACACTATATCTATCAT+GGG - chr8_4:18451535-18451554 Msa1317270:three_prime_UTR 25.0%
! ATAAGCCAAAATCATCAATA+GGG + chr8_4:18451623-18451642 None:intergenic 25.0%
! AATAAGCCAAAATCATCAAT+AGG + chr8_4:18451624-18451643 None:intergenic 25.0%
!!! TTTTGGCTTATTTTGATGAA+AGG - chr8_4:18451632-18451651 Msa1317270:intron 25.0%
!! CTTTCGAAGAAATTTTTGTT+GGG - chr8_4:18451671-18451690 Msa1317270:intron 25.0%
!! TTTCGAAGAAATTTTTGTTG+GGG - chr8_4:18451672-18451691 Msa1317270:intron 25.0%
!!! GTTTTGATTGTTTTTGAAGT+TGG - chr8_4:18451808-18451827 Msa1317270:intron 25.0%
!!! AGAAGATTTTGGTTTTTTTG+TGG - chr8_4:18451879-18451898 Msa1317270:intron 25.0%
!! ATTAACAGCTTTTCAAAAAG+TGG + chr8_4:18451940-18451959 None:intergenic 25.0%
! ATATTTAACAATCTTCAAGG+TGG - chr8_4:18451982-18452001 Msa1317270:intron 25.0%
!!! TTCAGTTTTGAAAAGAAAAG+GGG + chr8_4:18452112-18452131 None:intergenic 25.0%
!!! GTTCAGTTTTGAAAAGAAAA+GGG + chr8_4:18452113-18452132 None:intergenic 25.0%
! ATGCTTCTCTTGATATAAAT+TGG - chr8_4:18452233-18452252 Msa1317270:intron 25.0%
!!! TTGGTCTAGAATGATTTTTA+TGG - chr8_4:18452594-18452613 Msa1317270:intron 25.0%
!! AGAATGATTTTTATGGTCTA+TGG - chr8_4:18452601-18452620 Msa1317270:intron 25.0%
!!! CATGGATTAATATTTTCTGT+TGG - chr8_4:18452721-18452740 Msa1317270:intron 25.0%
!! AACATCATTTAAGACCAATT+GGG + chr8_4:18452770-18452789 None:intergenic 25.0%
!! AAACATCATTTAAGACCAAT+TGG + chr8_4:18452771-18452790 None:intergenic 25.0%
!!! GTTAGTTTGTTTAAGTTTTG+GGG - chr8_4:18452886-18452905 Msa1317270:intron 25.0%
! TAAGACATTTAAGAAAACCA+CGG + chr8_4:18452948-18452967 None:intergenic 25.0%
!! TTAACCAAGTATTGTCAATT+AGG + chr8_4:18453344-18453363 None:intergenic 25.0%
!! ATTGTGCAAACTTTAAAAAG+GGG + chr8_4:18453540-18453559 None:intergenic 25.0%
!! GTATTGTGCAAACTTTAAAA+AGG + chr8_4:18453542-18453561 None:intergenic 25.0%
! ATATCAGTGATGTTAAATAG+CGG - chr8_4:18454514-18454533 Msa1317270:CDS 25.0%
! AGATATTGAGCAAAAGTAAA+AGG + chr8_4:18454773-18454792 None:intergenic 25.0%
!!! CTATGTACTTCATTCTTTTT+TGG - chr8_4:18455191-18455210 Msa1317270:intron 25.0%
!!! TTCTTTTTTGGAGTTTTAAC+GGG - chr8_4:18455203-18455222 Msa1317270:intron 25.0%
! TTAAGATGCTATGATGTAAA+AGG + chr8_4:18455705-18455724 None:intergenic 25.0%
! TGATAAATATGTGAATGCAA+TGG - chr8_4:18456038-18456057 Msa1317270:intron 25.0%
! AGAAAATATTGTGAGAGAAA+GGG - chr8_4:18456151-18456170 Msa1317270:intron 25.0%
!! TTATTTTCTTCAGTAACTCA+AGG + chr8_4:18456245-18456264 None:intergenic 25.0%
! AGAAAATAATAGAGCTTTAC+CGG - chr8_4:18456256-18456275 Msa1317270:intron 25.0%
! TATATATAAGAGGGATTTAG+AGG - chr8_4:18456519-18456538 Msa1317270:intron 25.0%
! ATATATAAGAGGGATTTAGA+GGG - chr8_4:18456520-18456539 Msa1317270:intron 25.0%
!! CTTGTCATTTAAGAGAATTA+AGG - chr8_4:18456547-18456566 Msa1317270:intron 25.0%
!! TATTACTGTGTTTTGTAACT+TGG - chr8_4:18456698-18456717 Msa1317270:intron 25.0%
! AAAATAGATTGCAAAACTTC+CGG + chr8_4:18456744-18456763 None:intergenic 25.0%
! TATTATAATAATTTGGGGAG+GGG + chr8_4:18456833-18456852 None:intergenic 25.0%
! AAGTGGAAAAATAAAGAACT+AGG - chr8_4:18456931-18456950 Msa1317270:intron 25.0%
! AGTGGAAAAATAAAGAACTA+GGG - chr8_4:18456932-18456951 Msa1317270:intron 25.0%
! ATCATGATAATCTTATAGTC+AGG + chr8_4:18457069-18457088 None:intergenic 25.0%
! TGACTATAAGATTATCATGA+TGG - chr8_4:18457068-18457087 Msa1317270:five_prime_UTR 25.0%
! AGGATAACTGAAATAACTAT+TGG - chr8_4:18457344-18457363 Msa1317270:five_prime_UTR 25.0%
! GGATAACTGAAATAACTATT+GGG - chr8_4:18457345-18457364 Msa1317270:five_prime_UTR 25.0%
! GATAACTGAAATAACTATTG+GGG - chr8_4:18457346-18457365 Msa1317270:five_prime_UTR 25.0%
! ATAACTGAAATAACTATTGG+GGG - chr8_4:18457347-18457366 Msa1317270:five_prime_UTR 25.0%
! CGATGTTAAATAAATGGTAT+GGG + chr8_4:18457400-18457419 None:intergenic 25.0%
! TCGATGTTAAATAAATGGTA+TGG + chr8_4:18457401-18457420 None:intergenic 25.0%
! TACCATTTATTTAACATCGA+CGG - chr8_4:18457401-18457420 Msa1317270:five_prime_UTR 25.0%
! AATTTGTAAACTATATGGGA+TGG - chr8_4:18457442-18457461 Msa1317270:five_prime_UTR 25.0%
AATCTTTGTGTTTGTTCCTT+CGG + chr8_4:18451399-18451418 None:intergenic 30.0%
TAAAGGAAAGATCTTTGTTG+AGG + chr8_4:18451437-18451456 None:intergenic 30.0%
AGAAGAAGAAAGGGATTAAA+GGG + chr8_4:18451476-18451495 None:intergenic 30.0%
AAGAAGAAGAAAGGGATTAA+AGG + chr8_4:18451477-18451496 None:intergenic 30.0%
AACAGTGAAAGAAGAAGAAA+GGG + chr8_4:18451485-18451504 None:intergenic 30.0%
AAACAGTGAAAGAAGAAGAA+AGG + chr8_4:18451486-18451505 None:intergenic 30.0%
TTTCTTCTTCTTTCACTGTT+TGG - chr8_4:18451485-18451504 Msa1317270:three_prime_UTR 30.0%
! GCTTTCGAAGAAATTTTTGT+TGG - chr8_4:18451670-18451689 Msa1317270:intron 30.0%
! TTGAGAATTTTTCACTCTTC+AGG - chr8_4:18451769-18451788 Msa1317270:intron 30.0%
ACAGGATAAGAAACAATTGA+TGG - chr8_4:18452013-18452032 Msa1317270:intron 30.0%
! GCTTATTTCAGCAATTTTCA+TGG + chr8_4:18452045-18452064 None:intergenic 30.0%
!!! GGTTCAGTTTTGAAAAGAAA+AGG + chr8_4:18452114-18452133 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + chr8_4:18452480-18452499 None:intergenic 30.0%
AATGAGGTGAATGAATTCTA+TGG - chr8_4:18452665-18452684 Msa1317270:intron 30.0%
! TGTTTGCAGATTATTAGCTT+TGG - chr8_4:18452697-18452716 Msa1317270:intron 30.0%
!! GTTTGCAGATTATTAGCTTT+GGG - chr8_4:18452698-18452717 Msa1317270:intron 30.0%
!! AGCTTTTAACTGCACAATAA+TGG - chr8_4:18452836-18452855 Msa1317270:intron 30.0%
AACCATGAAAGATTGAATCA+TGG - chr8_4:18453158-18453177 Msa1317270:intron 30.0%
ATCCATGATTCAATCTTTCA+TGG + chr8_4:18453163-18453182 None:intergenic 30.0%
GTCCTGATTTCATATGTTTA+TGG - chr8_4:18453300-18453319 Msa1317270:intron 30.0%
TGCCATAAACATATGAAATC+AGG + chr8_4:18453305-18453324 None:intergenic 30.0%
GTTACCTAATTGACAATACT+TGG - chr8_4:18453337-18453356 Msa1317270:intron 30.0%
! TAGTTGTTTATTTGCCCTTT+TGG - chr8_4:18453389-18453408 Msa1317270:intron 30.0%
! AGTTGTTTATTTGCCCTTTT+GGG - chr8_4:18453390-18453409 Msa1317270:intron 30.0%
ACACAGAATGTCAAAAAACA+CGG + chr8_4:18453617-18453636 None:intergenic 30.0%
TTGCAGAAAAATTCATAGTG+TGG + chr8_4:18453707-18453726 None:intergenic 30.0%
! ACTATGAATTTTTCTGCAAG+AGG - chr8_4:18453708-18453727 Msa1317270:three_prime_UTR 30.0%
ACAGAAATAAGAAAAGGAGA+TGG - chr8_4:18453785-18453804 Msa1317270:CDS 30.0%
TAGTTCTTGCTGAAATCATT+CGG - chr8_4:18453980-18453999 Msa1317270:CDS 30.0%
! TTCCTTGTATTTTCCCTAAT+AGG - chr8_4:18454068-18454087 Msa1317270:intron 30.0%
!! TTTGATTTTCCTGCAATTGT+TGG + chr8_4:18454108-18454127 None:intergenic 30.0%
GACAAAAAGAAAGACAAAAG+CGG - chr8_4:18454246-18454265 Msa1317270:intron 30.0%
ACAAAAAGAAAGACAAAAGC+GGG - chr8_4:18454247-18454266 Msa1317270:intron 30.0%
CTCAAAGAAACATCATGAAA+AGG - chr8_4:18454293-18454312 Msa1317270:intron 30.0%
AGTACTTGTAAACTCTGTTT+AGG - chr8_4:18454463-18454482 Msa1317270:intron 30.0%
ATTAAAATGATCTCCTTCAC+TGG + chr8_4:18454491-18454510 None:intergenic 30.0%
TTCTGGTGTATATTTCTTAG+TGG - chr8_4:18454914-18454933 Msa1317270:CDS 30.0%
! TTGTTGTCATTTGTATGTGA+AGG - chr8_4:18455084-18455103 Msa1317270:CDS 30.0%
TCAAGAAATCTGAAAATGTC+AGG + chr8_4:18455119-18455138 None:intergenic 30.0%
! TGACATTTTCAGATTTCTTG+AGG - chr8_4:18455118-18455137 Msa1317270:CDS 30.0%
AAGAATGAAGTACATAGTCA+TGG + chr8_4:18455188-18455207 None:intergenic 30.0%
!!! TCTTTTTTGGAGTTTTAACG+GGG - chr8_4:18455204-18455223 Msa1317270:intron 30.0%
TCTTACAACTAGGAATCAAA+CGG + chr8_4:18455272-18455291 None:intergenic 30.0%
!! GCTCAATCCCTTTTATTTAT+TGG + chr8_4:18455855-18455874 None:intergenic 30.0%
CAACCTGTTATGTAATCAAA+GGG - chr8_4:18455925-18455944 Msa1317270:intron 30.0%
ATTCCCTTTGATTACATAAC+AGG + chr8_4:18455931-18455950 None:intergenic 30.0%
! TTCTCTCACAATATTTTCTG+TGG + chr8_4:18456150-18456169 None:intergenic 30.0%
CAGAAAATATTGTGAGAGAA+AGG - chr8_4:18456150-18456169 Msa1317270:intron 30.0%
TATATAAGAGGGATTTAGAG+GGG - chr8_4:18456521-18456540 Msa1317270:intron 30.0%
GGTTATTTACATAGCAAGTT+AGG - chr8_4:18456599-18456618 Msa1317270:intron 30.0%
ATTATAATAATTTGGGGAGG+GGG + chr8_4:18456832-18456851 None:intergenic 30.0%
! ATTTTTCACGAATCTCAAAC+TGG - chr8_4:18456885-18456904 Msa1317270:intron 30.0%
! AGAACTAGGGATTTTATTGA+TGG - chr8_4:18456945-18456964 Msa1317270:intron 30.0%
AGTTCACTAGCAATTCTATA+AGG + chr8_4:18457169-18457188 None:intergenic 30.0%
ATAGAATTGCTAGTGAACTT+TGG - chr8_4:18457170-18457189 Msa1317270:intron 30.0%
!! GATCTAGAAGCTTTTTGTTT+AGG - chr8_4:18457324-18457343 Msa1317270:five_prime_UTR 30.0%
ATCCGTCGATGTTAAATAAA+TGG + chr8_4:18457406-18457425 None:intergenic 30.0%
ATTTATTTAACATCGACGGA+TGG - chr8_4:18457405-18457424 Msa1317270:five_prime_UTR 30.0%
!! GACTACCCTATTGATGATTT+TGG - chr8_4:18451615-18451634 Msa1317270:intron 35.0%
GTGCCAATTTGAAGAAGATT+TGG - chr8_4:18451731-18451750 Msa1317270:three_prime_UTR 35.0%
CCACCAAATCTTCTTCAAAT+TGG + chr8_4:18451737-18451756 None:intergenic 35.0%
CCAATTTGAAGAAGATTTGG+TGG - chr8_4:18451734-18451753 Msa1317270:intron 35.0%
!!! AGAAGATTTGGTGGTTTTTG+TGG - chr8_4:18451743-18451762 Msa1317270:intron 35.0%
!!! GAAGATTTGGTGGTTTTTGT+GGG - chr8_4:18451744-18451763 Msa1317270:intron 35.0%
! AGAATTTTTCACTCTTCAGG+TGG - chr8_4:18451772-18451791 Msa1317270:intron 35.0%
! GAATTTTTCACTCTTCAGGT+GGG - chr8_4:18451773-18451792 Msa1317270:intron 35.0%
! AATTTTTCACTCTTCAGGTG+GGG - chr8_4:18451774-18451793 Msa1317270:intron 35.0%
TTCAAGGTGGAAATTGAAAC+AGG - chr8_4:18451995-18452014 Msa1317270:intron 35.0%
!!! AGTTTTGAAAAGAAAAGGGG+TGG + chr8_4:18452109-18452128 None:intergenic 35.0%
CTCTTGATATAAATTGGTGC+TGG - chr8_4:18452239-18452258 Msa1317270:intron 35.0%
!! TTTTTGTTATGCTAGTGCGT+TGG - chr8_4:18452315-18452334 Msa1317270:intron 35.0%
!!! ATATTTTCTGTTGGCCTTAC+TGG - chr8_4:18452730-18452749 Msa1317270:intron 35.0%
!!! TATTTTCTGTTGGCCTTACT+GGG - chr8_4:18452731-18452750 Msa1317270:intron 35.0%
AAAAACAAGTGTTCCCAGTA+AGG + chr8_4:18452747-18452766 None:intergenic 35.0%
!! GAACACTTGTTTTTCCCAAT+TGG - chr8_4:18452753-18452772 Msa1317270:intron 35.0%
! TGATGTTTTGTGTGAATGCT+AGG - chr8_4:18452783-18452802 Msa1317270:intron 35.0%
! GATGTTTTGTGTGAATGCTA+GGG - chr8_4:18452784-18452803 Msa1317270:intron 35.0%
! TGTGCAGTTAAAAGCTTTGT+AGG + chr8_4:18452832-18452851 None:intergenic 35.0%
TAACTGCACAATAATGGTTG+TGG - chr8_4:18452842-18452861 Msa1317270:intron 35.0%
AACTGCACAATAATGGTTGT+GGG - chr8_4:18452843-18452862 Msa1317270:intron 35.0%
ACAATAATGGTTGTGGGAAT+TGG - chr8_4:18452849-18452868 Msa1317270:intron 35.0%
! CAAGTAAAACGTTGCTTTGT+TGG - chr8_4:18452918-18452937 Msa1317270:intron 35.0%
CTCTTAGATTACGGTAAAGA+GGG + chr8_4:18452975-18452994 None:intergenic 35.0%
CTCTTTACCGTAATCTAAGA+GGG - chr8_4:18452974-18452993 Msa1317270:intron 35.0%
TGATTAAAGCTGTCGGATAT+TGG + chr8_4:18453121-18453140 None:intergenic 35.0%
! AATATCCGACAGCTTTAATC+AGG - chr8_4:18453120-18453139 Msa1317270:intron 35.0%
GATCCTGAAGGAAAAAAGTT+TGG - chr8_4:18453180-18453199 Msa1317270:intron 35.0%
!!! TTATTTGCCCTTTTGGGTTT+TGG - chr8_4:18453396-18453415 Msa1317270:intron 35.0%
AAATCTGCCAAAACCCAAAA+GGG + chr8_4:18453406-18453425 None:intergenic 35.0%
TTTAAAAAGGGGTGATTGCA+CGG + chr8_4:18453529-18453548 None:intergenic 35.0%
GGAGACACAGAAATAAGAAA+AGG - chr8_4:18453779-18453798 Msa1317270:CDS 35.0%
ACTACACAATTTCTTACAGC+AGG + chr8_4:18453938-18453957 None:intergenic 35.0%
! CTTGTATTTTCCCTAATAGG+CGG - chr8_4:18454071-18454090 Msa1317270:intron 35.0%
AAAGGAATACCAACAATTGC+AGG - chr8_4:18454096-18454115 Msa1317270:intron 35.0%
GCTATAGCGTTATTGCATAA+TGG - chr8_4:18454538-18454557 Msa1317270:CDS 35.0%
TATATAGCACTATTGCGTAG+TGG - chr8_4:18454634-18454653 Msa1317270:CDS 35.0%
ACATTGAACAGTGTTGTCAA+TGG + chr8_4:18454692-18454711 None:intergenic 35.0%
CATTTGCTCTACATGCTATT+TGG - chr8_4:18454715-18454734 Msa1317270:intron 35.0%
TGCTCAATATCTTTCAGAAG+AGG - chr8_4:18454781-18454800 Msa1317270:intron 35.0%
ATATACACCAGAAATGTGCT+GGG + chr8_4:18454907-18454926 None:intergenic 35.0%
AATATACACCAGAAATGTGC+TGG + chr8_4:18454908-18454927 None:intergenic 35.0%
! TTCACTCTCTTTTCCTCAAT+TGG - chr8_4:18455061-18455080 Msa1317270:CDS 35.0%
CAAATGACAACAACCAATTG+AGG + chr8_4:18455077-18455096 None:intergenic 35.0%
CTTACAACTAGGAATCAAAC+GGG + chr8_4:18455271-18455290 None:intergenic 35.0%
GTTGTAGCACTATAGCTAAA+CGG - chr8_4:18455378-18455397 Msa1317270:intron 35.0%
GCTGCTAATAAATAGCGTAT+TGG + chr8_4:18455429-18455448 None:intergenic 35.0%
CAAATTTAATTGTTGGGGAG+TGG - chr8_4:18455538-18455557 Msa1317270:intron 35.0%
ATTGTAAGACAAATCTACCC+TGG - chr8_4:18455603-18455622 Msa1317270:CDS 35.0%
AAAATCAATCAGGGTCTGAA+AGG + chr8_4:18455679-18455698 None:intergenic 35.0%
AGTGAGTTAGGAAGACAATT+AGG - chr8_4:18455812-18455831 Msa1317270:intron 35.0%
AATAAAAGGGATTGAGCATG+AGG - chr8_4:18455858-18455877 Msa1317270:intron 35.0%
ATAAAAGGGATTGAGCATGA+GGG - chr8_4:18455859-18455878 Msa1317270:intron 35.0%
GCAACCTGTTATGTAATCAA+AGG - chr8_4:18455924-18455943 Msa1317270:intron 35.0%
TATCAACCGACATTGTATCA+CGG + chr8_4:18455974-18455993 None:intergenic 35.0%
! CAATGTCGGTTGATATCAAT+CGG - chr8_4:18455979-18455998 Msa1317270:intron 35.0%
ATATGTGAATGCAATGGTTG+TGG - chr8_4:18456044-18456063 Msa1317270:intron 35.0%
AAATATTGTGAGAGAAAGGG+AGG - chr8_4:18456154-18456173 Msa1317270:intron 35.0%
GGTTCAATCTGTTGACATAA+CGG - chr8_4:18456214-18456233 Msa1317270:intron 35.0%
TTATCACTTACAGAAGAGTC+CGG + chr8_4:18456278-18456297 None:intergenic 35.0%
GACAGTCTGAACATTAACAA+GGG + chr8_4:18456357-18456376 None:intergenic 35.0%
AGACAGTCTGAACATTAACA+AGG + chr8_4:18456358-18456377 None:intergenic 35.0%
! AAGAAGTTTTTGTCGTACTG+AGG - chr8_4:18456458-18456477 Msa1317270:intron 35.0%
TAAAAGAATGCATCTTGCCT+CGG - chr8_4:18456495-18456514 Msa1317270:intron 35.0%
GATAGAATGAGAGAAGATGA+GGG + chr8_4:18456634-18456653 None:intergenic 35.0%
TGATAGAATGAGAGAAGATG+AGG + chr8_4:18456635-18456654 None:intergenic 35.0%
ATAATGCACAGACTGAAACA+TGG + chr8_4:18456666-18456685 None:intergenic 35.0%
TTGTAACTTGGATTTGTCAG+AGG - chr8_4:18456710-18456729 Msa1317270:intron 35.0%
TTATAATAATTTGGGGAGGG+GGG + chr8_4:18456831-18456850 None:intergenic 35.0%
CAGAAATAAGTAAACTCCCA+GGG + chr8_4:18456862-18456881 None:intergenic 35.0%
ACAGAAATAAGTAAACTCCC+AGG + chr8_4:18456863-18456882 None:intergenic 35.0%
TCTCAAAAGCAGTGATAAAG+TGG - chr8_4:18456914-18456933 Msa1317270:intron 35.0%
!!! TTTTTTGTTGCAGAGTAGCT+AGG - chr8_4:18457040-18457059 Msa1317270:five_prime_UTR 35.0%
! TTTTTGTTGCAGAGTAGCTA+GGG - chr8_4:18457041-18457060 Msa1317270:five_prime_UTR 35.0%
CTTTGTTGAGGTTTCAGTGT+TGG + chr8_4:18451425-18451444 None:intergenic 40.0%
! GTTTGGATCTGCAATTTTGC+AGG - chr8_4:18451502-18451521 Msa1317270:three_prime_UTR 40.0%
! CGAAGAAATTTTTGTTGGGG+TGG - chr8_4:18451675-18451694 Msa1317270:intron 40.0%
! GGTTGAAGTTTTGCAATTGC+TGG - chr8_4:18451696-18451715 Msa1317270:three_prime_UTR 40.0%
! TGAAGTTTTGCAATTGCTGG+AGG - chr8_4:18451699-18451718 Msa1317270:three_prime_UTR 40.0%
! GAAGTTTTGCAATTGCTGGA+GGG - chr8_4:18451700-18451719 Msa1317270:three_prime_UTR 40.0%
AGGGATGACATGAACTTGAT+TGG + chr8_4:18452135-18452154 None:intergenic 40.0%
TCAGTTTCACACGGATACAA+TGG + chr8_4:18452213-18452232 None:intergenic 40.0%
!! GAGAAGCATTCAGTTTCACA+CGG + chr8_4:18452222-18452241 None:intergenic 40.0%
TGATGATTGCATGTGCGATT+TGG - chr8_4:18452381-18452400 Msa1317270:intron 40.0%
! TTTGGTGTGACACATGTGTT+TGG - chr8_4:18452546-18452565 Msa1317270:intron 40.0%
CGTTTGTTTCAGTGCTTCAT+TGG - chr8_4:18452575-18452594 Msa1317270:intron 40.0%
!! CAGATTATTAGCTTTGGGCA+TGG - chr8_4:18452703-18452722 Msa1317270:intron 40.0%
CCTCTTAGATTACGGTAAAG+AGG + chr8_4:18452976-18452995 None:intergenic 40.0%
CCTCTTTACCGTAATCTAAG+AGG - chr8_4:18452973-18452992 Msa1317270:intron 40.0%
CATGCTACCCTCTTAGATTA+CGG + chr8_4:18452984-18453003 None:intergenic 40.0%
CAGAACCTGATTAAAGCTGT+CGG + chr8_4:18453128-18453147 None:intergenic 40.0%
! ACAGCTTTAATCAGGTTCTG+TGG - chr8_4:18453128-18453147 Msa1317270:intron 40.0%
GATTGAATCATGGATCCTGA+AGG - chr8_4:18453168-18453187 Msa1317270:intron 40.0%
!!! CCTCCAAACTTTTTTCCTTC+AGG + chr8_4:18453186-18453205 None:intergenic 40.0%
CCTGAAGGAAAAAAGTTTGG+AGG - chr8_4:18453183-18453202 Msa1317270:intron 40.0%
GAAGGAAAAAAGTTTGGAGG+AGG - chr8_4:18453186-18453205 Msa1317270:intron 40.0%
CAAATCTGCCAAAACCCAAA+AGG + chr8_4:18453407-18453426 None:intergenic 40.0%
!! TTCTGTGTTTTTGACTCCTC+AGG - chr8_4:18453629-18453648 Msa1317270:intron 40.0%
AAAAGGAGATGGCATGCAAT+TGG - chr8_4:18453796-18453815 Msa1317270:intron 40.0%
TTGAGTACATCCAAGTCGAA+AGG + chr8_4:18453875-18453894 None:intergenic 40.0%
!! TTTCGACTTGGATGTACTCA+AGG - chr8_4:18453874-18453893 Msa1317270:intron 40.0%
CGCCTATTAGGGAAAATACA+AGG + chr8_4:18454073-18454092 None:intergenic 40.0%
ATTCCTTTCTCCGCCTATTA+GGG + chr8_4:18454084-18454103 None:intergenic 40.0%
TATTCCTTTCTCCGCCTATT+AGG + chr8_4:18454085-18454104 None:intergenic 40.0%
! AGCATAAGAAGCACAAAGAC+AGG - chr8_4:18454151-18454170 Msa1317270:intron 40.0%
! GCATAAGAAGCACAAAGACA+GGG - chr8_4:18454152-18454171 Msa1317270:intron 40.0%
CAGAAGCAAAGACAAAGACA+AGG - chr8_4:18454224-18454243 Msa1317270:intron 40.0%
TTTCTTTGAGTGATCAGCAC+TGG + chr8_4:18454283-18454302 None:intergenic 40.0%
TTGAACAGTGTTGTCAATGG+CGG + chr8_4:18454689-18454708 None:intergenic 40.0%
! TTTCAGAAGAGGAAGCATGA+CGG - chr8_4:18454792-18454811 Msa1317270:intron 40.0%
GCACAAACACAAAAAGAGCA+AGG - chr8_4:18454836-18454855 Msa1317270:intron 40.0%
AGCTCAAGAATTGACGAGTT+GGG - chr8_4:18454999-18455018 Msa1317270:CDS 40.0%
!! AGAGATTTGTTGCTCAATCC+AGG + chr8_4:18455327-18455346 None:intergenic 40.0%
TAGCCACTATTTGAGAACAC+TGG + chr8_4:18455351-18455370 None:intergenic 40.0%
TTCTCAAATAGTGGCTACAG+CGG - chr8_4:18455354-18455373 Msa1317270:intron 40.0%
GAGATCAGTGTTGTCAATTG+TGG + chr8_4:18455506-18455525 None:intergenic 40.0%
ATTTAATTGTTGGGGAGTGG+AGG - chr8_4:18455541-18455560 Msa1317270:intron 40.0%
CACCAAGGAGAAAAATGAGA+GGG + chr8_4:18455766-18455785 None:intergenic 40.0%
!! CTCTCATTTTTCTCCTTGGT+GGG - chr8_4:18455765-18455784 Msa1317270:intron 40.0%
! ACTTGCTACCTAACTACCTA+GGG + chr8_4:18455795-18455814 None:intergenic 40.0%
AGTTAGGTAGCAAGTGAGTT+AGG - chr8_4:18455800-18455819 Msa1317270:intron 40.0%
TAAAAGGGATTGAGCATGAG+GGG - chr8_4:18455860-18455879 Msa1317270:intron 40.0%
AACAGGTTGCAGAACTTTGA+GGG + chr8_4:18455914-18455933 None:intergenic 40.0%
TAACAGGTTGCAGAACTTTG+AGG + chr8_4:18455915-18455934 None:intergenic 40.0%
GTGAATCCGTGATACAATGT+CGG - chr8_4:18455965-18455984 Msa1317270:intron 40.0%
TTCTTCGCTGACGATTATAC+AGG - chr8_4:18456074-18456093 Msa1317270:intron 40.0%
TGACGATTATACAGGTAGAG+AGG - chr8_4:18456082-18456101 Msa1317270:intron 40.0%
AGAGTAACTCTGGATGACAT+AGG - chr8_4:18456122-18456141 Msa1317270:intron 40.0%
GGACTATCTTCTACAGCATT+TGG - chr8_4:18456193-18456212 Msa1317270:intron 40.0%
TTTCTTCAGTAACTCAAGGC+AGG + chr8_4:18456241-18456260 None:intergenic 40.0%
!!! TTTTGTAGCTCTAACCTGCT+GGG + chr8_4:18456311-18456330 None:intergenic 40.0%
!!! TTTTTGTAGCTCTAACCTGC+TGG + chr8_4:18456312-18456331 None:intergenic 40.0%
! GAACATTAACAAGGGCACAT+GGG + chr8_4:18456349-18456368 None:intergenic 40.0%
! TGAACATTAACAAGGGCACA+TGG + chr8_4:18456350-18456369 None:intergenic 40.0%
CTGTCTATCACCTCTAAACA+AGG - chr8_4:18456372-18456391 Msa1317270:intron 40.0%
TGGATTGATTGCATGAGTTG+TGG + chr8_4:18456400-18456419 None:intergenic 40.0%
! TGTCGTACTGAGGAACATTT+TGG - chr8_4:18456468-18456487 Msa1317270:intron 40.0%
TTGCCTCGGCTATATATAAG+AGG - chr8_4:18456509-18456528 Msa1317270:intron 40.0%
TGCCTCGGCTATATATAAGA+GGG - chr8_4:18456510-18456529 Msa1317270:intron 40.0%
ATCCCTCTTATATATAGCCG+AGG + chr8_4:18456515-18456534 None:intergenic 40.0%
! TTTTGTTGCAGAGTAGCTAG+GGG - chr8_4:18457042-18457061 Msa1317270:five_prime_UTR 40.0%
! ATGATGGTGAATTCACCTGA+TGG - chr8_4:18457084-18457103 Msa1317270:five_prime_UTR 40.0%
!! AATTCACCTGATGGTGGAAA+AGG - chr8_4:18457093-18457112 Msa1317270:five_prime_UTR 40.0%
! GTCTTCCTTTTCCCAGTTTT+TGG - chr8_4:18457192-18457211 Msa1317270:intron 40.0%
TATCCAGTGCTCCAAAAACT+GGG + chr8_4:18457206-18457225 None:intergenic 40.0%
ATATCCAGTGCTCCAAAAAC+TGG + chr8_4:18457207-18457226 None:intergenic 40.0%
ACAATCACGAGTACTACCGA+AGG - chr8_4:18451380-18451399 Msa1317270:three_prime_UTR 45.0%
AAGAAAAGGGGTGGAACCAA+GGG + chr8_4:18452100-18452119 None:intergenic 45.0%
AAAGAAAAGGGGTGGAACCA+AGG + chr8_4:18452101-18452120 None:intergenic 45.0%
! GCACCAACGCTTTTGATCAA+AGG - chr8_4:18452423-18452442 Msa1317270:intron 45.0%
! ACGCCTTTGATCAAAAGCGT+TGG + chr8_4:18452429-18452448 None:intergenic 45.0%
! GTAATCACATGTGTCGGTGT+GGG + chr8_4:18452474-18452493 None:intergenic 45.0%
! TGTAATCACATGTGTCGGTG+TGG + chr8_4:18452475-18452494 None:intergenic 45.0%
GCTGATGTGTCACATGTGTT+TGG - chr8_4:18452528-18452547 Msa1317270:intron 45.0%
TCTCAAGAGAGACAAGTGCT+CGG - chr8_4:18453843-18453862 Msa1317270:intron 45.0%
TCAAGGAGGCTTTCCAACTA+AGG - chr8_4:18453891-18453910 Msa1317270:intron 45.0%
CAAGGAGGCTTTCCAACTAA+GGG - chr8_4:18453892-18453911 Msa1317270:intron 45.0%
CTTACAGCAGGCAAATCGAT+GGG + chr8_4:18453926-18453945 None:intergenic 45.0%
TCTTACAGCAGGCAAATCGA+TGG + chr8_4:18453927-18453946 None:intergenic 45.0%
TTTCCCTAATAGGCGGAGAA+AGG - chr8_4:18454078-18454097 Msa1317270:intron 45.0%
GAAGCACAAAGACAGGGATA+AGG - chr8_4:18454158-18454177 Msa1317270:intron 45.0%
CAAAGACAGGGATAAGGACA+AGG - chr8_4:18454164-18454183 Msa1317270:intron 45.0%
GAAGCACAAACATCGTCACA+AGG - chr8_4:18454200-18454219 Msa1317270:intron 45.0%
! CTCTGTTTAGGATCCAGTGA+AGG - chr8_4:18454475-18454494 Msa1317270:intron 45.0%
TTTCTGTCCCAGCACATTTC+TGG - chr8_4:18454897-18454916 Msa1317270:CDS 45.0%
CAATTCTTGAGCTCTTGTGC+TGG + chr8_4:18454992-18455011 None:intergenic 45.0%
GAGCTCAAGAATTGACGAGT+TGG - chr8_4:18454998-18455017 Msa1317270:CDS 45.0%
GCTCAAGAATTGACGAGTTG+GGG - chr8_4:18455000-18455019 Msa1317270:CDS 45.0%
! CTCAAGAATTGACGAGTTGG+GGG - chr8_4:18455001-18455020 Msa1317270:CDS 45.0%
GCTGTCTGAGTCTTACAACT+AGG + chr8_4:18455282-18455301 None:intergenic 45.0%
CTGCCAGTGTTCTCAAATAG+TGG - chr8_4:18455345-18455364 Msa1317270:intron 45.0%
GCTACGCTACAGTGATATAG+CGG + chr8_4:18455459-18455478 None:intergenic 45.0%
GCTATATCACTGTAGCGTAG+CGG - chr8_4:18455458-18455477 Msa1317270:intron 45.0%
AGGAGAAAAATGAGAGGGTC+AGG + chr8_4:18455761-18455780 None:intergenic 45.0%
!! GACCCTCTCATTTTTCTCCT+TGG - chr8_4:18455761-18455780 Msa1317270:intron 45.0%
CCACCAAGGAGAAAAATGAG+AGG + chr8_4:18455767-18455786 None:intergenic 45.0%
!! CCTCTCATTTTTCTCCTTGG+TGG - chr8_4:18455764-18455783 Msa1317270:intron 45.0%
CTTGCTACCTAACTACCTAG+GGG + chr8_4:18455794-18455813 None:intergenic 45.0%
! CACTTGCTACCTAACTACCT+AGG + chr8_4:18455796-18455815 None:intergenic 45.0%
!! GTGTTTTGTCGTTTGAGAGG+AGG - chr8_4:18455882-18455901 Msa1317270:intron 45.0%
! AATCGTCAGCGAAGAAGCAT+CGG + chr8_4:18456070-18456089 None:intergenic 45.0%
TCCAGCAACTAGAGTAACTC+TGG - chr8_4:18456112-18456131 Msa1317270:intron 45.0%
TCCAGAGTTACTCTAGTTGC+TGG + chr8_4:18456116-18456135 None:intergenic 45.0%
TATTGTGAGAGAAAGGGAGG+AGG - chr8_4:18456157-18456176 Msa1317270:intron 45.0%
ATTGTGAGAGAAAGGGAGGA+GGG - chr8_4:18456158-18456177 Msa1317270:intron 45.0%
! AGTTGTGGCTCCTTGTTTAG+AGG + chr8_4:18456385-18456404 None:intergenic 45.0%
! TTTGTCAGAGGTGCACAATC+CGG - chr8_4:18456722-18456741 Msa1317270:intron 45.0%
ATGGTGAATTCACCTGATGG+TGG - chr8_4:18457087-18457106 Msa1317270:five_prime_UTR 45.0%
GTGCTCCAAAAACTGGGAAA+AGG + chr8_4:18457200-18457219 None:intergenic 45.0%
!!! TTTCCCAGTTTTTGGAGCAC+TGG - chr8_4:18457200-18457219 Msa1317270:intron 45.0%
TCGACGGATGGATCTGTATA+TGG - chr8_4:18457417-18457436 Msa1317270:five_prime_UTR 45.0%
!! TGAATTTATTATAATAATTT+GGG + chr8_4:18456839-18456858 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAACAAT+TGG + chr8_4:18457025-18457044 None:intergenic 5.0%
!!! TTGTGCTGTTTTTCCCCCCT+TGG - chr8_4:18452081-18452100 Msa1317270:intron 50.0%
AGAAAAGGGGTGGAACCAAG+GGG + chr8_4:18452099-18452118 None:intergenic 50.0%
! GGGTTTTACATGTCCCGTGT+CGG + chr8_4:18452454-18452473 None:intergenic 50.0%
CACATGTGACACATCAGCAC+CGG + chr8_4:18452526-18452545 None:intergenic 50.0%
! GTTGCTTTGTTGGATTGCCG+TGG - chr8_4:18452928-18452947 Msa1317270:intron 50.0%
!! TTTTTGACTCCTCAGGACCG+AGG - chr8_4:18453636-18453655 Msa1317270:intron 50.0%
!! TTTTGACTCCTCAGGACCGA+GGG - chr8_4:18453637-18453656 Msa1317270:intron 50.0%
CACTACCTGCACAGTGTAGT+AGG - chr8_4:18453758-18453777 Msa1317270:exon 50.0%
TGTCTCCTACTACACTGTGC+AGG + chr8_4:18453766-18453785 None:intergenic 50.0%
TCGGATACAGCCTTTCGACT+TGG - chr8_4:18453862-18453881 Msa1317270:intron 50.0%
! CGACTTGGATGTACTCAAGG+AGG - chr8_4:18453877-18453896 Msa1317270:intron 50.0%
! TGGGAGCTGTTTCCCTTAGT+TGG + chr8_4:18453907-18453926 None:intergenic 50.0%
ACAGGGATAAGGACAAGGAC+AGG - chr8_4:18454169-18454188 Msa1317270:intron 50.0%
CAGGGATAAGGACAAGGACA+GGG - chr8_4:18454170-18454189 Msa1317270:intron 50.0%
! TGACGAGTTGGGGGCAATAA+AGG - chr8_4:18455010-18455029 Msa1317270:CDS 50.0%
TTGGGGGCAATAAAGGTTGC+TGG - chr8_4:18455017-18455036 Msa1317270:CDS 50.0%
ACACACTGAATCTGCAACCC+TGG + chr8_4:18455646-18455665 None:intergenic 50.0%
TGGGTTACCCCTAGGTAGTT+AGG - chr8_4:18455784-18455803 Msa1317270:intron 50.0%
!! GGGGTGTTTTGTCGTTTGAG+AGG - chr8_4:18455879-18455898 Msa1317270:intron 50.0%
TGCATCCTACCCTCCAAGAT+CGG + chr8_4:18456013-18456032 None:intergenic 50.0%
ATAAGCCAAGTAAGCCCAGC+AGG - chr8_4:18456294-18456313 Msa1317270:intron 50.0%
TCTAACCTGCTGGGCTTACT+TGG + chr8_4:18456302-18456321 None:intergenic 50.0%
! ACAAGGGCACATGGGTATCA+TGG + chr8_4:18456341-18456360 None:intergenic 50.0%
ACTAACACACCAGAGTCAGG+AGG + chr8_4:18456431-18456450 None:intergenic 50.0%
TCCTGACTCTGGTGTGTTAG+TGG - chr8_4:18456430-18456449 Msa1317270:intron 50.0%
! CTGCTTCCTTTTCCACCATC+AGG + chr8_4:18457102-18457121 None:intergenic 50.0%
!! CTGATGGTGGAAAAGGAAGC+AGG - chr8_4:18457100-18457119 Msa1317270:five_prime_UTR 50.0%
AAAAGGGGTGGAACCAAGGG+GGG + chr8_4:18452097-18452116 None:intergenic 55.0%
GAAAAGGGGTGGAACCAAGG+GGG + chr8_4:18452098-18452117 None:intergenic 55.0%
! GATCAAAGGCGTGTCCGACA+CGG - chr8_4:18452437-18452456 Msa1317270:intron 55.0%
! ATCAAAGGCGTGTCCGACAC+GGG - chr8_4:18452438-18452457 Msa1317270:intron 55.0%
ACAGCACCTGTCAACTCCCT+CGG + chr8_4:18453656-18453675 None:intergenic 55.0%
TCCGCGATTGACACAGGAAG+CGG + chr8_4:18453734-18453753 None:intergenic 55.0%
TGTGTGTCCGCGATTGACAC+AGG + chr8_4:18453740-18453759 None:intergenic 55.0%
TTGTTGGGGAGTGGAGGAAG+AGG - chr8_4:18455547-18455566 Msa1317270:intron 55.0%
TGTTGGGGAGTGGAGGAAGA+GGG - chr8_4:18455548-18455567 Msa1317270:intron 55.0%
GGAGTGGAGGAAGAGGGAAT+TGG - chr8_4:18455554-18455573 Msa1317270:intron 55.0%
CTACTGAACAACAGCGGCCA+GGG + chr8_4:18455623-18455642 None:intergenic 55.0%
CCCTGGCTACTGAACAACAG+CGG + chr8_4:18455629-18455648 None:intergenic 55.0%
CCGCTGTTGTTCAGTAGCCA+GGG - chr8_4:18455626-18455645 Msa1317270:exon 55.0%
TACCTAGGGGTAACCCACCA+AGG + chr8_4:18455781-18455800 None:intergenic 55.0%
ATCGGCATCAGAGCCGATCT+TGG - chr8_4:18455997-18456016 Msa1317270:intron 55.0%
GCATCAGAGCCGATCTTGGA+GGG - chr8_4:18456001-18456020 Msa1317270:intron 55.0%
TGAGAGAAAGGGAGGAGGGA+AGG - chr8_4:18456162-18456181 Msa1317270:intron 55.0%
GAGAGAAAGGGAGGAGGGAA+GGG - chr8_4:18456163-18456182 Msa1317270:intron 55.0%
GGAGGAGGGAAGGGTAGTAA+TGG - chr8_4:18456172-18456191 Msa1317270:intron 55.0%
AGAGTCAGGAGGTGGAGGTT+TGG + chr8_4:18456420-18456439 None:intergenic 55.0%
AAACCTCCACCTCCTGACTC+TGG - chr8_4:18456419-18456438 Msa1317270:intron 55.0%
AACACACCAGAGTCAGGAGG+TGG + chr8_4:18456428-18456447 None:intergenic 55.0%
GCCACTAACACACCAGAGTC+AGG + chr8_4:18456434-18456453 None:intergenic 55.0%
TGTCAACTCCCTCGGTCCTG+AGG + chr8_4:18453648-18453667 None:intergenic 60.0%
TCAGGACCGAGGGAGTTGAC+AGG - chr8_4:18453647-18453666 Msa1317270:intron 60.0%
! GAGGGAGTTGACAGGTGCTG+TGG - chr8_4:18453655-18453674 Msa1317270:intron 60.0%
GCCGCTTCCTGTGTCAATCG+CGG - chr8_4:18453730-18453749 Msa1317270:three_prime_UTR 60.0%
GCTACTGAACAACAGCGGCC+AGG + chr8_4:18455624-18455643 None:intergenic 60.0%
GCCGCTGTTGTTCAGTAGCC+AGG - chr8_4:18455625-18455644 Msa1317270:exon 60.0%
!! CTCCTTGGTGGGTTACCCCT+AGG - chr8_4:18455776-18455795 Msa1317270:intron 60.0%
GGCATCAGAGCCGATCTTGG+AGG - chr8_4:18456000-18456019 Msa1317270:intron 60.0%
CAGAGCCGATCTTGGAGGGT+AGG - chr8_4:18456005-18456024 Msa1317270:intron 60.0%
ACACCAGAGTCAGGAGGTGG+AGG + chr8_4:18456425-18456444 None:intergenic 60.0%
GAGGGGGGAACGAGTGATAC+GGG + chr8_4:18456816-18456835 None:intergenic 60.0%
GGAGGGGGGAACGAGTGATA+CGG + chr8_4:18456817-18456836 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 18451311 18457493 18451311 ID=Msa1317270;Name=Msa1317270
chr8_4 mRNA 18451311 18457493 18451311 ID=Msa1317270-mRNA-1;Parent=Msa1317270;Name=Msa1317270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=378|1|1|1|0.5|0.33|9|451|218
chr8_4 exon 18451311 18451596 18451311 ID=Msa1317270-mRNA-1:exon:6816;Parent=Msa1317270-mRNA-1
chr8_4 exon 18451683 18451751 18451683 ID=Msa1317270-mRNA-1:exon:6815;Parent=Msa1317270-mRNA-1
chr8_4 exon 18453665 18453811 18453665 ID=Msa1317270-mRNA-1:exon:6814;Parent=Msa1317270-mRNA-1
chr8_4 exon 18453947 18454006 18453947 ID=Msa1317270-mRNA-1:exon:6813;Parent=Msa1317270-mRNA-1
chr8_4 exon 18454490 18454714 18454490 ID=Msa1317270-mRNA-1:exon:6812;Parent=Msa1317270-mRNA-1
chr8_4 exon 18454864 18455153 18454864 ID=Msa1317270-mRNA-1:exon:6811;Parent=Msa1317270-mRNA-1
chr8_4 exon 18455597 18455672 18455597 ID=Msa1317270-mRNA-1:exon:6810;Parent=Msa1317270-mRNA-1
chr8_4 exon 18457014 18457133 18457014 ID=Msa1317270-mRNA-1:exon:6809;Parent=Msa1317270-mRNA-1
chr8_4 exon 18457281 18457493 18457281 ID=Msa1317270-mRNA-1:exon:6808;Parent=Msa1317270-mRNA-1
chr8_4 five_prime_UTR 18457281 18457493 18457281 ID=Msa1317270-mRNA-1:five_prime_utr;Parent=Msa1317270-mRNA-1
chr8_4 five_prime_UTR 18457014 18457133 18457014 ID=Msa1317270-mRNA-1:five_prime_utr;Parent=Msa1317270-mRNA-1
chr8_4 five_prime_UTR 18455628 18455672 18455628 ID=Msa1317270-mRNA-1:five_prime_utr;Parent=Msa1317270-mRNA-1
chr8_4 CDS 18455597 18455627 18455597 ID=Msa1317270-mRNA-1:cds;Parent=Msa1317270-mRNA-1
chr8_4 CDS 18454864 18455153 18454864 ID=Msa1317270-mRNA-1:cds;Parent=Msa1317270-mRNA-1
chr8_4 CDS 18454490 18454714 18454490 ID=Msa1317270-mRNA-1:cds;Parent=Msa1317270-mRNA-1
chr8_4 CDS 18453947 18454006 18453947 ID=Msa1317270-mRNA-1:cds;Parent=Msa1317270-mRNA-1
chr8_4 CDS 18453761 18453811 18453761 ID=Msa1317270-mRNA-1:cds;Parent=Msa1317270-mRNA-1
chr8_4 three_prime_UTR 18453665 18453760 18453665 ID=Msa1317270-mRNA-1:three_prime_utr;Parent=Msa1317270-mRNA-1
chr8_4 three_prime_UTR 18451683 18451751 18451683 ID=Msa1317270-mRNA-1:three_prime_utr;Parent=Msa1317270-mRNA-1
chr8_4 three_prime_UTR 18451311 18451596 18451311 ID=Msa1317270-mRNA-1:three_prime_utr;Parent=Msa1317270-mRNA-1
Gene Sequence

>Msa1317270

ATGGATCCTGAAGGAAAAAAGTTTGGAGGAGGACCGAGGGAGTTGACAGGTGCTGTGGATCTCATAAGTCATTTCAAATTAATACCACACTATGAATTTTTCTGCAAGAGGCCGCTTCCTGTGTCAATCGCGGACACACACTACCTGCACAGTGTAGTAGGAGACACAGAAATAAGAAAAGGAGATGGCATGCAATTGGACGAACTCATTCAGAATACATCTTTCTCAAGAGAGACAAGTGCTCGGATACAGCCTTTCGACTTGGATGTACTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCCATCGATTTGCCTGCTGCGGAGAAAGGAATACCAACAATTGCAGGAAAATCAAAAAGTGAGAAAGACAAAGAGAAGAAGCATAAGAAGCACAAAGACAGGGATAAGGACAAGGACAGGGAGCATAAGAAGCACAAACATCGTCACAAGGACAGAAGCAAAGACAAAGACAAGGACAAAAAGAAAGACAAAAGCGGGCATCGTGATTCCAGTGCTGATCACTCAAAGAAACATCATGAAAAGAAGAGGAAGCATGACGGAGATGATGATGCTAATGATGTGCACAAACACAAAAAGAGCAAGCACAAGAGCTCAAGAATTGACGAGTTGGGGGCAATAAAGGTTGCTGGCTGA

Protein sequence

>Msa1317270

MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEIRKGDGMQLDELIQNTSFSRETSARIQPFDLDVLKEAFQLRETAPIDLPAAEKGIPTIAGKSKSEKDKEKKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHRDSSADHSKKHHEKKRKHDGDDDANDVHKHKKSKHKSSRIDELGAIKVAG*