AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437530 MtrunA17_Chr4g0043841 97.959 147 3 0 1 147 1 147 9.27e-105 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437530 AT1G08480.1 69.466 131 40 0 14 144 12 142 5.11e-69 205

Find 77 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCTGAGGCTAAGTTTC+TGG 0.132479 tig0028330:-8188 Msa1437530:CDS
ATTCGTCTTCCCAGTCATTC+TGG 0.231471 tig0028330:-11888 Msa1437530:CDS
ATCATGCACTTCAACTTTAC+AGG 0.238941 tig0028330:-8222 Msa1437530:CDS
ATCGCTTCTGATCCTGTTCA+TGG 0.253430 tig0028330:-11751 Msa1437530:CDS
CTGAAGAATCAAACAGAAAA+TGG 0.258389 tig0028330:+13287 None:intergenic
CTTGGTGAAGTTGGAATAAT+TGG 0.263649 tig0028330:+11822 None:intergenic
GGGAAGGCTACAAAGAGTTT+TGG 0.275599 tig0028330:-11867 Msa1437530:CDS
AAATACACCTCCAGCTAAAA+AGG 0.286066 tig0028330:+8273 None:intergenic
TGTTTGATTCTTCAGTTTAG+AGG 0.290261 tig0028330:-13279 Msa1437530:five_prime_UTR
GTGATAAGCCCCTCACTTCA+TGG 0.377665 tig0028330:-11798 Msa1437530:CDS
GCAGTGCAATATGGTCTTGC+AGG 0.377833 tig0028330:-8586 Msa1437530:CDS
GGTCTTGCAGGAAGTGCTTT+GGG 0.386470 tig0028330:-8574 Msa1437530:CDS
AAGAAGAAATGAAACTGAAT+AGG 0.402556 tig0028330:+13449 None:intergenic
GTTGGAATAATTGGTCATAA+AGG 0.404341 tig0028330:+11831 None:intergenic
GAATTGAAGCTGTTTGCGTC+TGG 0.411048 tig0028330:-8137 Msa1437530:exon
CTTATCACGCTTGGTGAAGT+TGG 0.419972 tig0028330:+11813 None:intergenic
CACCAGCGGTGGTGTGGTGG+TGG 0.421779 tig0028330:+13359 None:intergenic
TTCGTCTTCCCAGTCATTCT+GGG 0.426208 tig0028330:-11887 Msa1437530:CDS
TGGTCTTGCAGGAAGTGCTT+TGG 0.428188 tig0028330:-8575 Msa1437530:CDS
ACAGCTTCAATTCCCTCCTT+CGG 0.445398 tig0028330:+8147 None:intergenic
GGTGTATTTGGGTGGACATA+TGG 0.445640 tig0028330:-8259 Msa1437530:CDS
GTTACCACGGGTCCATGAAC+AGG 0.451033 tig0028330:+11739 None:intergenic
GCTAGAGAAGCAGTGCAATA+TGG 0.455581 tig0028330:-8595 Msa1437530:CDS
TAAATATTCTGTTGTGACAT+AGG 0.457331 tig0028330:-8037 Msa1437530:three_prime_UTR
TGTAGCCTTCCCAGAATGAC+TGG 0.458362 tig0028330:+11878 None:intergenic
GTAATGTTCGGTCGCTAGGT+TGG 0.468684 tig0028330:+13384 None:intergenic
TAATGTTCGGTCGCTAGGTT+GGG 0.477785 tig0028330:+13385 None:intergenic
GTGTGACGAGGCACTTGGTT+TGG 0.489926 tig0028330:-7881 Msa1437530:three_prime_UTR
CGTTCTCAGATGAAAGAGAA+AGG 0.497516 tig0028330:+13424 None:intergenic
TCAGCGAACATAAATTGCAT+TGG 0.505276 tig0028330:+8061 None:intergenic
AATGTAAACAAAAGTTTGAA+AGG 0.509648 tig0028330:-7806 Msa1437530:three_prime_UTR
AGTTTCTGGAGTGGTGGAAA+AGG 0.517098 tig0028330:-8174 Msa1437530:CDS
TAGCTGGAGGTGTATTTGGG+TGG 0.524323 tig0028330:-8267 Msa1437530:CDS
GAGTATGCAGCGGTGATGGA+TGG 0.524409 tig0028330:+13312 None:intergenic
GGATGTAATGTTCGGTCGCT+AGG 0.524714 tig0028330:+13380 None:intergenic
AAAGGAAAACACACAACAGA+GGG 0.533783 tig0028330:+7958 None:intergenic
GAGAAGGAGGAGAGTGGTCG+CGG 0.536260 tig0028330:+13334 None:intergenic
GGAGGAGTATGCAGCGGTGA+TGG 0.536395 tig0028330:+13308 None:intergenic
AAATATTCAAGGAGTTTACA+TGG 0.544388 tig0028330:-8523 Msa1437530:intron
ATCCACCACCACACCACCGC+TGG 0.552222 tig0028330:-13361 Msa1437530:five_prime_UTR
ACTTTACAGGGTAGACACAT+TGG 0.564264 tig0028330:-8209 Msa1437530:CDS
AGTGAGGGGCTTATCACGCT+TGG 0.564366 tig0028330:+11804 None:intergenic
TCTTCCCAGTCATTCTGGGA+AGG 0.573126 tig0028330:-11883 Msa1437530:CDS
GTAGCCTTCCCAGAATGACT+GGG 0.575729 tig0028330:+11879 None:intergenic
GTTCTCAGATGAAAGAGAAA+GGG 0.575776 tig0028330:+13425 None:intergenic
GCGGCTCACCAGCGGTGGTG+TGG 0.577126 tig0028330:+13353 None:intergenic
TGGATGGAGAAGGAGGAGAG+TGG 0.580671 tig0028330:+13328 None:intergenic
GCTCACCAGCGGTGGTGTGG+TGG 0.580762 tig0028330:+13356 None:intergenic
GGTAGACACATTGGCTTCTG+AGG 0.581406 tig0028330:-8200 Msa1437530:CDS
AGGCTAAGTTTCTGGAGTGG+TGG 0.583207 tig0028330:-8180 Msa1437530:CDS
AGAGTTAGACCATGAAGTGA+GGG 0.583758 tig0028330:+11789 None:intergenic
CTGAGGCTAAGTTTCTGGAG+TGG 0.585312 tig0028330:-8183 Msa1437530:CDS
GGAAAACACACAACAGAGGG+AGG 0.585736 tig0028330:+7961 None:intergenic
GAGTGGTCGCGGCTCACCAG+CGG 0.585737 tig0028330:+13345 None:intergenic
TCATGCACTTCAACTTTACA+GGG 0.597628 tig0028330:-8221 Msa1437530:CDS
GTGGTGGTGGATGTAATGTT+CGG 0.599785 tig0028330:+13372 None:intergenic
CTTATGGACCTTGTGTGACG+AGG 0.606780 tig0028330:-7893 Msa1437530:three_prime_UTR
ACCTTGTGTGACGAGGCACT+TGG 0.610178 tig0028330:-7886 Msa1437530:three_prime_UTR
TGGTCGCGGCTCACCAGCGG+TGG 0.610630 tig0028330:+13348 None:intergenic
ATATTTCCATGCAAAACTTG+CGG 0.611503 tig0028330:+8540 None:intergenic
AAAAGGAAAACACACAACAG+AGG 0.613932 tig0028330:+7957 None:intergenic
TGGAAAAGGAAGACCGAAGG+AGG 0.614633 tig0028330:-8160 Msa1437530:CDS
ATGGTCTAACTCTGATGTTG+AGG 0.618270 tig0028330:-11779 Msa1437530:CDS
TCACGTAGATCGCTACTGAT+CGG 0.620673 tig0028330:-14041 Msa1437530:intron
ACCAAGTGCCTCGTCACACA+AGG 0.620950 tig0028330:+7885 None:intergenic
CAGAGTTAGACCATGAAGTG+AGG 0.623061 tig0028330:+11788 None:intergenic
TGATCCTGTTCATGGACCCG+TGG 0.624228 tig0028330:-11743 Msa1437530:intron
GCGGTGATGGATGGAGAAGG+AGG 0.631664 tig0028330:+13321 None:intergenic
GCAGCGGTGATGGATGGAGA+AGG 0.641167 tig0028330:+13318 None:intergenic
GGAAAAGGAAGACCGAAGGA+GGG 0.642478 tig0028330:-8159 Msa1437530:CDS
AGTGAAACAAGTGAAGGTGA+TGG 0.649584 tig0028330:-11926 Msa1437530:exon
AAGAATCAAACAGAAAATGG+AGG 0.650208 tig0028330:+13290 None:intergenic
TGGTGGAAAAGGAAGACCGA+AGG 0.651293 tig0028330:-8163 Msa1437530:CDS
CTGCAGAGTGAAACAAGTGA+AGG 0.670293 tig0028330:-11932 Msa1437530:intron
CAGTAGCGATCTACGTGAGA+CGG 0.672937 tig0028330:+14046 None:intergenic
GAGTTAGACCATGAAGTGAG+GGG 0.691408 tig0028330:+11790 None:intergenic
GAAAATGGAGGAGTATGCAG+CGG 0.693351 tig0028330:+13302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAGAAAAAATAGAA+CGG - tig0028330:11074-11093 Msa1437530:intron 10.0%
!! TTTAGAGAAAAATAAATAAA+TGG + tig0028330:12469-12488 None:intergenic 10.0%
!!! TAATTTTATTTAGAACAAAA+AGG + tig0028330:13977-13996 None:intergenic 10.0%
!!! TTTTGTTCTAAATAAAATTA+TGG - tig0028330:13977-13996 Msa1437530:intron 10.0%
!!! TTTTTTTACCTCATAAATAT+TGG + tig0028330:8226-8245 None:intergenic 15.0%
!! AAAAAAAAAAACAAAGAAAG+AGG - tig0028330:8239-8258 Msa1437530:CDS 15.0%
!! TATAAATCTAAAGATAAAAG+AGG - tig0028330:8362-8381 Msa1437530:intron 15.0%
!! AATATGTAATTTACTGATAA+GGG - tig0028330:8901-8920 Msa1437530:intron 15.0%
!!! TTTTATTGTTTCAATTTGTT+AGG - tig0028330:8976-8995 Msa1437530:intron 15.0%
!! ATTATGTAAAATATTATCAC+AGG + tig0028330:9019-9038 None:intergenic 15.0%
!! AATTAACAAAATATTATCAC+AGG + tig0028330:9156-9175 None:intergenic 15.0%
!!! TGCAATATGATTTATATTTT+TGG - tig0028330:9295-9314 Msa1437530:intron 15.0%
!!! ATATTTTTGGTTTATTTTGA+TGG - tig0028330:9308-9327 Msa1437530:intron 15.0%
!!! TTTTAGAAATTAATCCATTT+TGG + tig0028330:9439-9458 None:intergenic 15.0%
!! ATAAATTATGCATATTATAG+AGG + tig0028330:9602-9621 None:intergenic 15.0%
!! GAGAAAATAAGTAAATAAAT+TGG + tig0028330:9843-9862 None:intergenic 15.0%
!!! TAAAACAATTTTAATCAAGA+AGG + tig0028330:10481-10500 None:intergenic 15.0%
!!! AAATTGTTTTAGATTATATG+AGG - tig0028330:10490-10509 Msa1437530:intron 15.0%
!!! TATCTATTTTGTTGTTAAAT+TGG - tig0028330:10707-10726 Msa1437530:intron 15.0%
!! TAATATTTCATTTGGAAAAA+TGG - tig0028330:10818-10837 Msa1437530:intron 15.0%
!! CAATTATTAAAGAAAATACT+GGG + tig0028330:12172-12191 None:intergenic 15.0%
!! ACAATTATTAAAGAAAATAC+TGG + tig0028330:12173-12192 None:intergenic 15.0%
!!! TTTGTTTAATTTTTCTCATT+TGG + tig0028330:12817-12836 None:intergenic 15.0%
!! CATATGAAACAAAAAAAATA+GGG + tig0028330:13040-13059 None:intergenic 15.0%
!! ACATATGAAACAAAAAAAAT+AGG + tig0028330:13041-13060 None:intergenic 15.0%
!!! TAAGTAACAAAATTTTACAT+TGG + tig0028330:14005-14024 None:intergenic 15.0%
!!! ATGTAAAATTTTGTTACTTA+TGG - tig0028330:14005-14024 Msa1437530:intron 15.0%
!! CAATATGTAATTTACTGATA+AGG - tig0028330:8900-8919 Msa1437530:intron 20.0%
!! GTAGTTTAAATTTGAATGAT+CGG - tig0028330:9240-9259 Msa1437530:intron 20.0%
!! AATTAATAACTATTATCGGT+CGG - tig0028330:9635-9654 Msa1437530:intron 20.0%
!! AGATGTATTTATTTCGATTA+GGG - tig0028330:9889-9908 Msa1437530:intron 20.0%
!!! GACAAAATATATTTTGATAG+AGG + tig0028330:10870-10889 None:intergenic 20.0%
!! CACATTTCAAATAAAAGTAA+AGG + tig0028330:10986-11005 None:intergenic 20.0%
!!! TTGCTTTTCATTTATTTTTC+AGG - tig0028330:11250-11269 Msa1437530:intron 20.0%
!! CTTTCCTAAACTTAAATAAA+TGG - tig0028330:11635-11654 Msa1437530:intron 20.0%
!!! TAATTACTCAATTTTGAGTT+GGG - tig0028330:11723-11742 Msa1437530:intron 20.0%
!! TAGTAAATTATTGTCTTAGA+TGG + tig0028330:12120-12139 None:intergenic 20.0%
!!! GACAATAATTTACTATTTTG+CGG - tig0028330:12125-12144 Msa1437530:intron 20.0%
!! TATACTTTGCTTGAATATAA+TGG - tig0028330:12231-12250 Msa1437530:intron 20.0%
!! TACTTAAAACATATGACTTA+TGG - tig0028330:12306-12325 Msa1437530:intron 20.0%
!! TAAATGGAAAGTTAGAAATA+TGG + tig0028330:12453-12472 None:intergenic 20.0%
!! CATATGTGATTATTCATATT+TGG - tig0028330:13054-13073 Msa1437530:intron 20.0%
!!! TTATTGTTTTACTATTCAAC+AGG - tig0028330:13607-13626 Msa1437530:intron 20.0%
!! AATGTAAACAAAAGTTTGAA+AGG - tig0028330:14108-14127 Msa1437530:five_prime_UTR 20.0%
! TAGGTTCAATTAAGAAAAGT+GGG + tig0028330:7972-7991 None:intergenic 25.0%
! ATAGGTTCAATTAAGAAAAG+TGG + tig0028330:7973-7992 None:intergenic 25.0%
!! TTTTCTTAATTGAACCTATG+AGG - tig0028330:7974-7993 Msa1437530:three_prime_UTR 25.0%
! TTTCTTAATTGAACCTATGA+GGG - tig0028330:7975-7994 Msa1437530:three_prime_UTR 25.0%
! GAAAAAAAAAACGTCATGAA+CGG + tig0028330:8089-8108 None:intergenic 25.0%
!!! GTTCATGACGTTTTTTTTTT+CGG - tig0028330:8088-8107 Msa1437530:three_prime_UTR 25.0%
!!! TTCATGACGTTTTTTTTTTC+GGG - tig0028330:8089-8108 Msa1437530:three_prime_UTR 25.0%
!! TTTTATTGGGTGGTTTATTT+CGG - tig0028330:8135-8154 Msa1437530:exon 25.0%
! GACGACTTTAACAAAAAAAA+TGG + tig0028330:8183-8202 None:intergenic 25.0%
!! ATATTGGTTGCTGATAATAA+CGG + tig0028330:8210-8229 None:intergenic 25.0%
! GAATTCTGCAAATTAATGAA+GGG + tig0028330:8446-8465 None:intergenic 25.0%
! AAGAAGAAATGAAACTGAAT+AGG + tig0028330:8468-8487 None:intergenic 25.0%
! TTGATGTAATTAGATGTGTT+AGG - tig0028330:9113-9132 Msa1437530:intron 25.0%
!!! AAATTTGAATGATCGGTTTT+TGG - tig0028330:9247-9266 Msa1437530:intron 25.0%
!!! TTTTTGGTTTATTTTGATGG+CGG - tig0028330:9311-9330 Msa1437530:intron 25.0%
! CAGATGTATTTATTTCGATT+AGG - tig0028330:9888-9907 Msa1437530:intron 25.0%
! ACGATGTAATTGAATTTGAT+TGG - tig0028330:9956-9975 Msa1437530:intron 25.0%
!! CTATGATTTAGAGTATATCT+CGG - tig0028330:10351-10370 Msa1437530:intron 25.0%
!!! TGTTTTAGATTATATGAGGA+TGG - tig0028330:10494-10513 Msa1437530:intron 25.0%
!!! TTTTGGGTTTTTTTTCTTTG+CGG - tig0028330:10572-10591 Msa1437530:intron 25.0%
!! TAGTTTGAAATTTGTACACT+TGG - tig0028330:10758-10777 Msa1437530:intron 25.0%
! TATGTTGGATTTCTTAATGT+CGG - tig0028330:10794-10813 Msa1437530:intron 25.0%
!! ATGTCGGTTAATATTTCATT+TGG - tig0028330:10810-10829 Msa1437530:intron 25.0%
! GAAAAATGGTGTGATTAAAA+TGG - tig0028330:10832-10851 Msa1437530:intron 25.0%
! TTGTAAAATAACAGTCTTCA+TGG + tig0028330:10892-10911 None:intergenic 25.0%
!!! TAATTTTTCGACAAAGTTCA+AGG + tig0028330:11121-11140 None:intergenic 25.0%
! AAAATTAGTTAGACCAATGA+AGG - tig0028330:11134-11153 Msa1437530:intron 25.0%
!!! TTTATTTTTCAGGTCAACTA+TGG - tig0028330:11260-11279 Msa1437530:intron 25.0%
!! TGGTCCATTTATTTAAGTTT+AGG + tig0028330:11642-11661 None:intergenic 25.0%
!!! GTAATTACTCAATTTTGAGT+TGG - tig0028330:11722-11741 Msa1437530:intron 25.0%
! TACACATGATAAACAATTTG+TGG + tig0028330:11924-11943 None:intergenic 25.0%
! AATTCATTATCATGTAAAGC+TGG - tig0028330:11962-11981 Msa1437530:intron 25.0%
!! AATAATCAAGAGAGATTTTG+CGG + tig0028330:11996-12015 None:intergenic 25.0%
!!! CTCCATCTATTTTTAACTAA+CGG - tig0028330:12038-12057 Msa1437530:intron 25.0%
! ATTCAAGCAAAGTATATGAA+AGG + tig0028330:12227-12246 None:intergenic 25.0%
!! ATACTTTAGTTTCTCTTACT+TGG - tig0028330:12397-12416 Msa1437530:intron 25.0%
!! TACTTTAGTTTCTCTTACTT+GGG - tig0028330:12398-12417 Msa1437530:intron 25.0%
! AGATAAATCTTAGACATAGA+TGG + tig0028330:12430-12449 None:intergenic 25.0%
!!! GACATAGTTTTAATAAGAGA+AGG + tig0028330:12493-12512 None:intergenic 25.0%
! TATAACTATATGTGCACTAT+GGG + tig0028330:12603-12622 None:intergenic 25.0%
! ATAGTGCACATATAGTTATA+GGG - tig0028330:12603-12622 Msa1437530:intron 25.0%
!! GATCATTTTGCAATAGAATT+AGG + tig0028330:12728-12747 None:intergenic 25.0%
! TTGCAAAATGATCAATAAAC+TGG - tig0028330:12735-12754 Msa1437530:intron 25.0%
! TTTCTCATTTGGAAAGATTT+GGG + tig0028330:12806-12825 None:intergenic 25.0%
!! TTTTCTCATTTGGAAAGATT+TGG + tig0028330:12807-12826 None:intergenic 25.0%
!!! AATGGACAACCATATTTTTT+TGG - tig0028330:12843-12862 Msa1437530:intron 25.0%
! TAGCATTTGCCAAAAAAATA+TGG + tig0028330:12855-12874 None:intergenic 25.0%
! TAAAAAGAGCAACTTTACAT+TGG + tig0028330:12977-12996 None:intergenic 25.0%
!! AATGTAAAGTTGCTCTTTTT+AGG - tig0028330:12976-12995 Msa1437530:intron 25.0%
! TTAAAAGAGGAAAAGAGAAA+AGG + tig0028330:13188-13207 None:intergenic 25.0%
! AAATATTCAAGGAGTTTACA+TGG - tig0028330:13391-13410 Msa1437530:five_prime_UTR 25.0%
! TAAATATTCTGTTGTGACAT+AGG - tig0028330:13877-13896 Msa1437530:intron 25.0%
AAGGAAAGAATGAAGTTAAG+AGG + tig0028330:7904-7923 None:intergenic 30.0%
TCGGTAAAGTAGAAAACAAA+AGG + tig0028330:7923-7942 None:intergenic 30.0%
ATTGGAGTGTATGAACAAAT+CGG + tig0028330:7942-7961 None:intergenic 30.0%
AGAAAAGTGGGAATACAAAT+TGG + tig0028330:7960-7979 None:intergenic 30.0%
TTCTTAATTGAACCTATGAG+GGG - tig0028330:7976-7995 Msa1437530:three_prime_UTR 30.0%
ATCAGCAACCAATATTTATG+AGG - tig0028330:8215-8234 Msa1437530:CDS 30.0%
GGAATTCTGCAAATTAATGA+AGG + tig0028330:8447-8466 None:intergenic 30.0%
AAGAATCAAACAGAAAATGG+AGG + tig0028330:8627-8646 None:intergenic 30.0%
CTGAAGAATCAAACAGAAAA+TGG + tig0028330:8630-8649 None:intergenic 30.0%
TGTTTGATTCTTCAGTTTAG+AGG - tig0028330:8635-8654 Msa1437530:intron 30.0%
!!! TTCCTTCATCTGTTGTTTTT+AGG - tig0028330:8742-8761 Msa1437530:intron 30.0%
!!! TCCTTCATCTGTTGTTTTTA+GGG - tig0028330:8743-8762 Msa1437530:intron 30.0%
!!! TTTTTAGGGTTATTTGCAGT+GGG - tig0028330:8757-8776 Msa1437530:intron 30.0%
TTTCATTGTTCTATTGTCAC+AGG + tig0028330:9055-9074 None:intergenic 30.0%
ATATATGCACTTTACGCTTT+CGG + tig0028330:9197-9216 None:intergenic 30.0%
AAAGCGTAAAGTGCATATAT+AGG - tig0028330:9197-9216 Msa1437530:intron 30.0%
!!! TTTTGGTTTATTTTGATGGC+GGG - tig0028330:9312-9331 Msa1437530:intron 30.0%
TATCCATTTCAAACTGCAAA+AGG - tig0028330:9706-9725 Msa1437530:intron 30.0%
GATGAAAAAAACAATGTCAC+GGG + tig0028330:9765-9784 None:intergenic 30.0%
CGATGAAAAAAACAATGTCA+CGG + tig0028330:9766-9785 None:intergenic 30.0%
!!! CGTGACATTGTTTTTTTCAT+CGG - tig0028330:9764-9783 Msa1437530:intron 30.0%
!! AAGTTGATGAATCATAGTAG+GGG + tig0028330:9817-9836 None:intergenic 30.0%
!! GAAGTTGATGAATCATAGTA+GGG + tig0028330:9818-9837 None:intergenic 30.0%
!! TGAAGTTGATGAATCATAGT+AGG + tig0028330:9819-9838 None:intergenic 30.0%
GTTGGAATAATTGGTCATAA+AGG + tig0028330:10086-10105 None:intergenic 30.0%
GATATGAAAAGGTGAAAGAA+TGG + tig0028330:10202-10221 None:intergenic 30.0%
AATGCAGAAACGATATGAAA+AGG + tig0028330:10213-10232 None:intergenic 30.0%
TTAGCTAGCATATGGTTTAT+AGG - tig0028330:10286-10305 Msa1437530:intron 30.0%
TAGCTAGCATATGGTTTATA+GGG - tig0028330:10287-10306 Msa1437530:intron 30.0%
TATGGTTTATAGGGTTTGAT+TGG - tig0028330:10296-10315 Msa1437530:intron 30.0%
! ATTTAGAGTATATCTCGGTT+AGG - tig0028330:10356-10375 Msa1437530:intron 30.0%
ATGTATTGTGTAAACACGAA+AGG + tig0028330:10664-10683 None:intergenic 30.0%
AGAAATCCAACATAAAGAAG+TGG + tig0028330:10788-10807 None:intergenic 30.0%
GGTGTGATTAAAATGGTATA+TGG - tig0028330:10839-10858 Msa1437530:intron 30.0%
! GGCATGTTTTCATCAATAAA+AGG + tig0028330:11027-11046 None:intergenic 30.0%
TTAGATAGAATCCACTTGTT+TGG - tig0028330:11427-11446 Msa1437530:intron 30.0%
! TAGTTTTTCCCTTCAGAAAA+GGG + tig0028330:11456-11475 None:intergenic 30.0%
ACAACGATTATGTAAGTATG+TGG - tig0028330:11508-11527 Msa1437530:intron 30.0%
CAACGATTATGTAAGTATGT+GGG - tig0028330:11509-11528 Msa1437530:intron 30.0%
ACATCCTTTAGATATCATCA+TGG - tig0028330:11808-11827 Msa1437530:CDS 30.0%
ACATCCATGATGATATCTAA+AGG + tig0028330:11815-11834 None:intergenic 30.0%
ACATTAAAACCGATGTATGT+CGG + tig0028330:11867-11886 None:intergenic 30.0%
GATAAACAATTTGTGGTTGT+TGG + tig0028330:11917-11936 None:intergenic 30.0%
GTCCGTTAGTTAAAAATAGA+TGG + tig0028330:12043-12062 None:intergenic 30.0%
AAGCAAAGTATATGAAAGGA+AGG + tig0028330:12223-12242 None:intergenic 30.0%
CTATAACTATATGTGCACTA+TGG + tig0028330:12604-12623 None:intergenic 30.0%
CATAGTGCACATATAGTTAT+AGG - tig0028330:12602-12621 Msa1437530:intron 30.0%
! CAATAAACTGGACATGTTTT+CGG - tig0028330:12747-12766 Msa1437530:intron 30.0%
AAACAGCTATTGAGAAAGAA+AGG + tig0028330:13130-13149 None:intergenic 30.0%
CAAAACTACAAGATCAACAA+TGG + tig0028330:13227-13246 None:intergenic 30.0%
! TTTTAAGCTGAAATGGGAAA+AGG + tig0028330:13297-13316 None:intergenic 30.0%
!!! TAGCAGTTTTAAGCTGAAAT+GGG + tig0028330:13303-13322 None:intergenic 30.0%
ATATTTCCATGCAAAACTTG+CGG + tig0028330:13377-13396 None:intergenic 30.0%
! GTTTTGCATGGAAATATTCA+AGG - tig0028330:13380-13399 Msa1437530:five_prime_UTR 30.0%
GATGTTTAGGCATAGTAAAA+GGG + tig0028330:13448-13467 None:intergenic 30.0%
TGATGTTTAGGCATAGTAAA+AGG + tig0028330:13449-13468 None:intergenic 30.0%
! TTCATACGATGATGATGTTT+AGG + tig0028330:13461-13480 None:intergenic 30.0%
TAAACATCATCATCGTATGA+AGG - tig0028330:13460-13479 Msa1437530:intron 30.0%
TTCTACCTGAAGTTTAATGT+AGG - tig0028330:13519-13538 Msa1437530:intron 30.0%
GTACATGAAATACTTTCGTA+CGG + tig0028330:13559-13578 None:intergenic 30.0%
! TTCGATCGGATTGTTCTTTT+CGG + tig0028330:8034-8053 None:intergenic 35.0%
AAAAAAACGTCATGAACGGA+CGG + tig0028330:8085-8104 None:intergenic 35.0%
!!! ATGACGTTTTTTTTTTCGGG+TGG - tig0028330:8092-8111 Msa1437530:three_prime_UTR 35.0%
!!! AACGGGTTACGGTTTTTATT+GGG - tig0028330:8122-8141 Msa1437530:three_prime_UTR 35.0%
AAACTAGAGTAGAATGATCG+TGG - tig0028330:8289-8308 Msa1437530:intron 35.0%
TGAAGAAAAGAGAACTGTGT+TGG - tig0028330:8406-8425 Msa1437530:intron 35.0%
GTTCTCAGATGAAAGAGAAA+GGG + tig0028330:8492-8511 None:intergenic 35.0%
AACAGATGAAGGAAAACTCA+TGG + tig0028330:8736-8755 None:intergenic 35.0%
ACCCTAAAAACAACAGATGA+AGG + tig0028330:8747-8766 None:intergenic 35.0%
!!! GTTTTTAGGGTTATTTGCAG+TGG - tig0028330:8756-8775 Msa1437530:intron 35.0%
!!! AGTGGGATTGTGTTGTTTTA+AGG - tig0028330:8774-8793 Msa1437530:intron 35.0%
!!! GTGGGATTGTGTTGTTTTAA+GGG - tig0028330:8775-8794 Msa1437530:intron 35.0%
ATAGTGAAAGATGAGACATG+TGG - tig0028330:9475-9494 Msa1437530:intron 35.0%
TTGAAATGGATAACGTAGGA+CGG + tig0028330:9698-9717 None:intergenic 35.0%
! CAGTTTGAAATGGATAACGT+AGG + tig0028330:9702-9721 None:intergenic 35.0%
! TCACCTTTTGCAGTTTGAAA+TGG + tig0028330:9712-9731 None:intergenic 35.0%
!!! GTTTTTTTCATCGGATACAG+CGG - tig0028330:9773-9792 Msa1437530:intron 35.0%
CTTGGTGAAGTTGGAATAAT+TGG + tig0028330:10095-10114 None:intergenic 35.0%
GTTGTAGTGAGATGCTTATT+TGG - tig0028330:10256-10275 Msa1437530:intron 35.0%
! GATGTTTGTTAGCTAGCATA+TGG - tig0028330:10278-10297 Msa1437530:intron 35.0%
ATAGGGTTTGATTGGTAGAA+AGG - tig0028330:10304-10323 Msa1437530:intron 35.0%
! AAGGTTATTTCATGTGTGCT+TGG - tig0028330:10323-10342 Msa1437530:intron 35.0%
ACTTGCAAATACTACTATCC+CGG + tig0028330:10424-10443 None:intergenic 35.0%
! ACTCCAGCTTATGGAAATTT+TGG - tig0028330:10555-10574 Msa1437530:intron 35.0%
! CTCCAGCTTATGGAAATTTT+GGG - tig0028330:10556-10575 Msa1437530:intron 35.0%
AACCCAAAATTTCCATAAGC+TGG + tig0028330:10561-10580 None:intergenic 35.0%
!! TGAAATGTGTTGATTGTCAC+TGG - tig0028330:10997-11016 Msa1437530:intron 35.0%
CGCTGTAACAGTTTAACATT+TGG + tig0028330:11048-11067 None:intergenic 35.0%
TAGCACTTAGCACTATTACA+TGG - tig0028330:11203-11222 Msa1437530:intron 35.0%
! GTAGTTTTTCCCTTCAGAAA+AGG + tig0028330:11457-11476 None:intergenic 35.0%
! CTAACTTCTAAGAAAAGCAG+TGG + tig0028330:11565-11584 None:intergenic 35.0%
TCAGTAAATTCTGACTTCCT+TGG - tig0028330:11678-11697 Msa1437530:intron 35.0%
TCTAAAGGATGTTCTGATGA+TGG + tig0028330:11800-11819 None:intergenic 35.0%
TATGTTTCACCGACATACAT+CGG - tig0028330:11855-11874 Msa1437530:CDS 35.0%
! TTTAGTTTCTCTTACTTGGG+TGG - tig0028330:12401-12420 Msa1437530:intron 35.0%
! GAAAGATTTGGGATGTTTCA+AGG + tig0028330:12795-12814 None:intergenic 35.0%
TTGCTTAACATGTGCCTTAA+GGG - tig0028330:12999-13018 Msa1437530:intron 35.0%
GGAGCTTAGCATCTTAATAA+TGG - tig0028330:13075-13094 Msa1437530:intron 35.0%
TCTTTCTCAATAGCTGTTTG+TGG - tig0028330:13131-13150 Msa1437530:intron 35.0%
AAGAGAAAAGGATGGAGAAA+AGG + tig0028330:13176-13195 None:intergenic 35.0%
AAGAGGAAAAGAGAAAAGGA+TGG + tig0028330:13184-13203 None:intergenic 35.0%
!!! CTAGCAGTTTTAAGCTGAAA+TGG + tig0028330:13304-13323 None:intergenic 35.0%
CAAAGCCTACATTAAACTTC+AGG + tig0028330:13527-13546 None:intergenic 35.0%
! TTTTACTATTCAACAGGTGC+TGG - tig0028330:13613-13632 Msa1437530:intron 35.0%
AAATACACCTCCAGCTAAAA+AGG + tig0028330:13644-13663 None:intergenic 35.0%
!!! TTTTTAGCTGGAGGTGTATT+TGG - tig0028330:13643-13662 Msa1437530:intron 35.0%
!! TTTTAGCTGGAGGTGTATTT+GGG - tig0028330:13644-13663 Msa1437530:intron 35.0%
ATCATGCACTTCAACTTTAC+AGG - tig0028330:13692-13711 Msa1437530:intron 35.0%
TCATGCACTTCAACTTTACA+GGG - tig0028330:13693-13712 Msa1437530:intron 35.0%
TCAGCGAACATAAATTGCAT+TGG + tig0028330:13856-13875 None:intergenic 35.0%
AAAGGAAAACACACAACAGA+GGG + tig0028330:13959-13978 None:intergenic 35.0%
AAAAGGAAAACACACAACAG+AGG + tig0028330:13960-13979 None:intergenic 35.0%
TTAATTGAACCTATGAGGGG+TGG - tig0028330:7979-7998 Msa1437530:three_prime_UTR 40.0%
AAAAAACGTCATGAACGGAC+GGG + tig0028330:8084-8103 None:intergenic 40.0%
!!! ACGTTTTTTTTTTCGGGTGG+CGG - tig0028330:8095-8114 Msa1437530:three_prime_UTR 40.0%
!!! CAACGGGTTACGGTTTTTAT+TGG - tig0028330:8121-8140 Msa1437530:three_prime_UTR 40.0%
!! TAAAGATAAAAGAGGCGCCA+TGG - tig0028330:8370-8389 Msa1437530:intron 40.0%
! CTTTTCTTCACCACAGCAAA+TGG + tig0028330:8396-8415 None:intergenic 40.0%
CGTTCTCAGATGAAAGAGAA+AGG + tig0028330:8493-8512 None:intergenic 40.0%
CGCTGGATATTACAAGCTTA+TGG + tig0028330:8838-8857 None:intergenic 40.0%
! ATTTGTTAGGCTACTGTGAC+AGG - tig0028330:8989-9008 Msa1437530:intron 40.0%
GAGCCAGACAAAAAAGTTTG+GGG + tig0028330:9348-9367 None:intergenic 40.0%
GGAGCCAGACAAAAAAGTTT+GGG + tig0028330:9349-9368 None:intergenic 40.0%
! CTTTTCTCTCTGCACCAAAA+TGG - tig0028330:9422-9441 Msa1437530:intron 40.0%
TAACTATTATCGGTCGGTGT+TGG - tig0028330:9641-9660 Msa1437530:intron 40.0%
! AACTATTATCGGTCGGTGTT+GGG - tig0028330:9642-9661 Msa1437530:intron 40.0%
GAAAAAAACAATGTCACGGG+TGG + tig0028330:9762-9781 None:intergenic 40.0%
TTGATGAATCATAGTAGGGG+TGG + tig0028330:9814-9833 None:intergenic 40.0%
AGTGAAACAAGTGAAGGTGA+TGG - tig0028330:9988-10007 Msa1437530:intron 40.0%
! GGAAGGCTACAAAGAGTTTT+GGG - tig0028330:10048-10067 Msa1437530:intron 40.0%
! GAAGGCTACAAAGAGTTTTG+GGG - tig0028330:10049-10068 Msa1437530:intron 40.0%
AGAGTTAGACCATGAAGTGA+GGG + tig0028330:10128-10147 None:intergenic 40.0%
ATGGTCTAACTCTGATGTTG+AGG - tig0028330:10135-10154 Msa1437530:intron 40.0%
!! TGAAAGAATGGTGTTACCAC+GGG + tig0028330:10190-10209 None:intergenic 40.0%
!! GTGAAAGAATGGTGTTACCA+CGG + tig0028330:10191-10210 None:intergenic 40.0%
CTTTGCGGAGTTAAATGTAG+AGG - tig0028330:10587-10606 Msa1437530:intron 40.0%
TCATGCTTCTGTTCCTTCAT+TGG + tig0028330:11150-11169 None:intergenic 40.0%
ATGGTGCATGTCTCTTAAGT+TGG - tig0028330:11279-11298 Msa1437530:intron 40.0%
ATGCTTAGACAGGTCTTTGA+CGG - tig0028330:11362-11381 Msa1437530:intron 40.0%
TAACTCGCAATAGATGCAAG+TGG - tig0028330:11399-11418 Msa1437530:intron 40.0%
! TTTGGTTGCCCTTTTCTGAA+GGG - tig0028330:11445-11464 Msa1437530:intron 40.0%
CTGACTTCCTTGGAGATATT+TGG - tig0028330:11688-11707 Msa1437530:intron 40.0%
ACAGCATCCAAATATCTCCA+AGG + tig0028330:11698-11717 None:intergenic 40.0%
!! AAGGATGTTCTGATGATGGA+AGG + tig0028330:11796-11815 None:intergenic 40.0%
TCGGTGAAACATACGAATGA+AGG + tig0028330:11848-11867 None:intergenic 40.0%
TTGTTTCATCTGCGATGCAT+AGG + tig0028330:12199-12218 None:intergenic 40.0%
! CACAATGATGGAGAGATAGA+TGG + tig0028330:12270-12289 None:intergenic 40.0%
CATCTATCTCTCCATCATTG+TGG - tig0028330:12268-12287 Msa1437530:intron 40.0%
AAGTCCATCATCCACAATGA+TGG + tig0028330:12282-12301 None:intergenic 40.0%
TATGTGCACTATGGGTAACT+TGG + tig0028330:12595-12614 None:intergenic 40.0%
GTTGCTTAACATGTGCCTTA+AGG - tig0028330:12998-13017 Msa1437530:intron 40.0%
CAGCTATTGAGAAAGAAAGG+AGG + tig0028330:13127-13146 None:intergenic 40.0%
!! TGTTATCTGAAGTGCTGCTT+GGG - tig0028330:13265-13284 Msa1437530:five_prime_UTR 40.0%
! TATTCACCGCAAGTTTTGCA+TGG - tig0028330:13368-13387 Msa1437530:five_prime_UTR 40.0%
ACTTTACAGGGTAGACACAT+TGG - tig0028330:13705-13724 Msa1437530:intron 40.0%
TCACGTAGATCGCTACTGAT+CGG - tig0028330:7873-7892 Msa1437530:three_prime_UTR 45.0%
GAACAATCCGATCGAAACCA+CGG - tig0028330:8038-8057 Msa1437530:three_prime_UTR 45.0%
! GGGTTACGGTTTTTATTGGG+TGG - tig0028330:8125-8144 Msa1437530:three_prime_UTR 45.0%
TGATCGTGGAAGATGAAGAG+AGG - tig0028330:8303-8322 Msa1437530:intron 45.0%
TAATGTTCGGTCGCTAGGTT+GGG + tig0028330:8532-8551 None:intergenic 45.0%
!! GTGGTGGTGGATGTAATGTT+CGG + tig0028330:8545-8564 None:intergenic 45.0%
! GAAAATGGAGGAGTATGCAG+CGG + tig0028330:8615-8634 None:intergenic 45.0%
! ACAAAAAAGTTTGGGGTGGC+GGG + tig0028330:9341-9360 None:intergenic 45.0%
! GACAAAAAAGTTTGGGGTGG+CGG + tig0028330:9342-9361 None:intergenic 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + tig0028330:9345-9364 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - tig0028330:9342-9361 Msa1437530:intron 45.0%
CGGAGCCAGACAAAAAAGTT+TGG + tig0028330:9350-9369 None:intergenic 45.0%
TTGTTTGTGTGAGGGAGAGT+GGG - tig0028330:9377-9396 Msa1437530:intron 45.0%
AGGGAGAGTGGGTAAAGAAA+TGG - tig0028330:9388-9407 Msa1437530:intron 45.0%
GTGGGTAAAGAAATGGAGTG+AGG - tig0028330:9395-9414 Msa1437530:intron 45.0%
AGATGAGACATGTGGTGTGA+TGG - tig0028330:9483-9502 Msa1437530:intron 45.0%
GGAAACTAGCACAGAGTAGA+GGG + tig0028330:9581-9600 None:intergenic 45.0%
AGGAAACTAGCACAGAGTAG+AGG + tig0028330:9582-9601 None:intergenic 45.0%
TGGATAACGTAGGACGGAAT+CGG + tig0028330:9692-9711 None:intergenic 45.0%
ATGTCACGGGTGGTTTAGTT+CGG + tig0028330:9752-9771 None:intergenic 45.0%
CTGCAGAGTGAAACAAGTGA+AGG - tig0028330:9982-10001 Msa1437530:intron 45.0%
ATTCGTCTTCCCAGTCATTC+TGG - tig0028330:10026-10045 Msa1437530:intron 45.0%
TTCGTCTTCCCAGTCATTCT+GGG - tig0028330:10027-10046 Msa1437530:intron 45.0%
! GGGAAGGCTACAAAGAGTTT+TGG - tig0028330:10047-10066 Msa1437530:intron 45.0%
! CTTATCACGCTTGGTGAAGT+TGG + tig0028330:10104-10123 None:intergenic 45.0%
GAGTTAGACCATGAAGTGAG+GGG + tig0028330:10127-10146 None:intergenic 45.0%
CAGAGTTAGACCATGAAGTG+AGG + tig0028330:10129-10148 None:intergenic 45.0%
ATCGCTTCTGATCCTGTTCA+TGG - tig0028330:10163-10182 Msa1437530:intron 45.0%
ATCTCGGTTAGGAACTTTGC+TGG - tig0028330:10367-10386 Msa1437530:intron 45.0%
!! CCATAAGCTGGAGTTGATGA+AGG + tig0028330:10549-10568 None:intergenic 45.0%
CCTTCATCAACTCCAGCTTA+TGG - tig0028330:10546-10565 Msa1437530:intron 45.0%
!! GGTGTGCCACTTCTTTATGT+TGG - tig0028330:10779-10798 Msa1437530:intron 45.0%
GTCACAGTCAATGCTTAGAC+AGG - tig0028330:11352-11371 Msa1437530:intron 45.0%
!! GTCTTTGACGGCTTGTTATG+TGG - tig0028330:11374-11393 Msa1437530:intron 45.0%
GAAAAGGGCAACCAAACAAG+TGG + tig0028330:11441-11460 None:intergenic 45.0%
! GTTTGGTTGCCCTTTTCTGA+AGG - tig0028330:11444-11463 Msa1437530:intron 45.0%
CTGACTCTGCATTCGTATAG+TGG + tig0028330:11662-11681 None:intergenic 45.0%
ATTTGATCAACCCTCCACAC+TGG - tig0028330:12071-12090 Msa1437530:intron 45.0%
! ATTTTGCGGCTTTCCTACAG+TGG - tig0028330:12139-12158 Msa1437530:intron 45.0%
CTCTCCATCATTGTGGATGA+TGG - tig0028330:12275-12294 Msa1437530:intron 45.0%
TGACTGTGTATCACTCCTCA+CGG - tig0028330:12640-12659 Msa1437530:intron 45.0%
! GGACATGTTTTCGGTACCAA+CGG - tig0028330:12756-12775 Msa1437530:intron 45.0%
! TTTTCGGTACCAACGGTGAT+TGG - tig0028330:12763-12782 Msa1437530:intron 45.0%
AATGCTAACTTGAGCCCTCA+AGG - tig0028330:12868-12887 Msa1437530:intron 45.0%
ATGCTAACTTGAGCCCTCAA+GGG - tig0028330:12869-12888 Msa1437530:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG + tig0028330:12885-12904 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + tig0028330:12886-12905 None:intergenic 45.0%
! CATGCTAACTTGTGCCCTTA+AGG + tig0028330:13016-13035 None:intergenic 45.0%
!! CTGTTATCTGAAGTGCTGCT+TGG - tig0028330:13264-13283 Msa1437530:five_prime_UTR 45.0%
GCTAGAGAAGCAGTGCAATA+TGG - tig0028330:13319-13338 Msa1437530:five_prime_UTR 45.0%
GGTGTATTTGGGTGGACATA+TGG - tig0028330:13655-13674 Msa1437530:intron 45.0%
!! AGTTTCTGGAGTGGTGGAAA+AGG - tig0028330:13740-13759 Msa1437530:intron 45.0%
ACAGCTTCAATTCCCTCCTT+CGG + tig0028330:13770-13789 None:intergenic 45.0%
GAATTGAAGCTGTTTGCGTC+TGG - tig0028330:13777-13796 Msa1437530:intron 45.0%
CACAACAGAGGGAGGAAAAA+TGG + tig0028330:13948-13967 None:intergenic 45.0%
!! TATTAATTAATAACTATTAT+CGG - tig0028330:9631-9650 Msa1437530:intron 5.0%
!! AAATTAAACAAAAATTATAA+TGG - tig0028330:12825-12844 Msa1437530:intron 5.0%
!!! ATTTATTTATATTTTAAAAG+AGG + tig0028330:13201-13220 None:intergenic 5.0%
CAGTAGCGATCTACGTGAGA+CGG + tig0028330:7871-7890 None:intergenic 50.0%
ACCTATGAGGGGTGGACAAT+CGG - tig0028330:7987-8006 Msa1437530:three_prime_UTR 50.0%
! GGATTGTTCTTTTCGGTCCG+CGG + tig0028330:8027-8046 None:intergenic 50.0%
AATCCGATCGAAACCACGGT+TGG - tig0028330:8042-8061 Msa1437530:three_prime_UTR 50.0%
TGTCCAACCGTGGTTTCGAT+CGG + tig0028330:8048-8067 None:intergenic 50.0%
GGGCTTAAATTGTCCAACCG+TGG + tig0028330:8058-8077 None:intergenic 50.0%
!!! TTTTCGGGTGGCGGTTTCAA+CGG - tig0028330:8104-8123 Msa1437530:three_prime_UTR 50.0%
TTCACCACAGCAAATGGCCA+TGG + tig0028330:8390-8409 None:intergenic 50.0%
GTAATGTTCGGTCGCTAGGT+TGG + tig0028330:8533-8552 None:intergenic 50.0%
GGATGTAATGTTCGGTCGCT+AGG + tig0028330:8537-8556 None:intergenic 50.0%
CTGTTATCACTTTGCAGCGC+TGG + tig0028330:8855-8874 None:intergenic 50.0%
CTCACACAAACAACCAGTGG+CGG + tig0028330:9370-9389 None:intergenic 50.0%
! GCCACTGGTTGTTTGTGTGA+GGG - tig0028330:9369-9388 Msa1437530:intron 50.0%
TCCCTCACACAAACAACCAG+TGG + tig0028330:9373-9392 None:intergenic 50.0%
GTTGTTTGTGTGAGGGAGAG+TGG - tig0028330:9376-9395 Msa1437530:intron 50.0%
TGAGACATGTGGTGTGATGG+TGG - tig0028330:9486-9505 Msa1437530:intron 50.0%
ATACTGACACCACACGTCTC+AGG + tig0028330:9517-9536 None:intergenic 50.0%
!! TTATCGGTCGGTGTTGGGTT+TGG - tig0028330:9647-9666 Msa1437530:intron 50.0%
AACGTAGGACGGAATCGGAT+TGG + tig0028330:9687-9706 None:intergenic 50.0%
! TGTCACGGGTGGTTTAGTTC+GGG + tig0028330:9751-9770 None:intergenic 50.0%
TCATCGGATACAGCGGACAT+CGG - tig0028330:9780-9799 Msa1437530:intron 50.0%
! TCTTCCCAGTCATTCTGGGA+AGG - tig0028330:10031-10050 Msa1437530:intron 50.0%
GTAGCCTTCCCAGAATGACT+GGG + tig0028330:10038-10057 None:intergenic 50.0%
TGTAGCCTTCCCAGAATGAC+TGG + tig0028330:10039-10058 None:intergenic 50.0%
GTGATAAGCCCCTCACTTCA+TGG - tig0028330:10116-10135 Msa1437530:intron 50.0%
TGCGTTTGATGTCTTGCTGC+CGG - tig0028330:10397-10416 Msa1437530:intron 50.0%
CAAATACTACTATCCCGGCC+CGG + tig0028330:10419-10438 None:intergenic 50.0%
!! CGAAAGGAGTGCTGTATCAC+TGG + tig0028330:10648-10667 None:intergenic 50.0%
GGAAGACACTCAAGTGTGCT+TGG - tig0028330:10728-10747 Msa1437530:intron 50.0%
GCAGTGGAACAGTTCTTTCG+TGG + tig0028330:11549-11568 None:intergenic 50.0%
ATCACTCCTCACGGTAGTTG+TGG - tig0028330:12649-12668 Msa1437530:intron 50.0%
ATAGAGCCACAACTACCGTG+AGG + tig0028330:12658-12677 None:intergenic 50.0%
AGGCAAATGCCAATCACCGT+TGG + tig0028330:12775-12794 None:intergenic 50.0%
! GCAGTGCAATATGGTCTTGC+AGG - tig0028330:13328-13347 Msa1437530:five_prime_UTR 50.0%
!! TGGTCTTGCAGGAAGTGCTT+TGG - tig0028330:13339-13358 Msa1437530:five_prime_UTR 50.0%
!! GGTCTTGCAGGAAGTGCTTT+GGG - tig0028330:13340-13359 Msa1437530:five_prime_UTR 50.0%
!! GCTGGTCTGTCCTTTTTAGC+TGG - tig0028330:13631-13650 Msa1437530:intron 50.0%
!!! GGTCTGTCCTTTTTAGCTGG+AGG - tig0028330:13634-13653 Msa1437530:intron 50.0%
! TAGCTGGAGGTGTATTTGGG+TGG - tig0028330:13647-13666 Msa1437530:intron 50.0%
!! GGTAGACACATTGGCTTCTG+AGG - tig0028330:13714-13733 Msa1437530:intron 50.0%
!! GGCTTCTGAGGCTAAGTTTC+TGG - tig0028330:13726-13745 Msa1437530:intron 50.0%
! CTGAGGCTAAGTTTCTGGAG+TGG - tig0028330:13731-13750 Msa1437530:intron 50.0%
!! AGGCTAAGTTTCTGGAGTGG+TGG - tig0028330:13734-13753 Msa1437530:intron 50.0%
TGGTGGAAAAGGAAGACCGA+AGG - tig0028330:13751-13770 Msa1437530:intron 50.0%
TGGAAAAGGAAGACCGAAGG+AGG - tig0028330:13754-13773 Msa1437530:intron 50.0%
GGAAAAGGAAGACCGAAGGA+GGG - tig0028330:13755-13774 Msa1437530:intron 50.0%
GGAAAACACACAACAGAGGG+AGG + tig0028330:13956-13975 None:intergenic 50.0%
CTTATGGACCTTGTGTGACG+AGG - tig0028330:14021-14040 Msa1437530:intron 50.0%
ACCGATTGTCCACCCCTCAT+AGG + tig0028330:7991-8010 None:intergenic 55.0%
ATGAGGGGTGGACAATCGGT+CGG - tig0028330:7991-8010 Msa1437530:three_prime_UTR 55.0%
GGTGGACAATCGGTCGGATT+CGG - tig0028330:7997-8016 Msa1437530:three_prime_UTR 55.0%
! GACAATCGGTCGGATTCGGT+CGG - tig0028330:8001-8020 Msa1437530:three_prime_UTR 55.0%
CGTCATGAACGGACGGGAAT+GGG + tig0028330:8078-8097 None:intergenic 55.0%
ACGTCATGAACGGACGGGAA+TGG + tig0028330:8079-8098 None:intergenic 55.0%
! TTTCGGGTGGCGGTTTCAAC+GGG - tig0028330:8105-8124 Msa1437530:three_prime_UTR 55.0%
!! GTGGCGGTTTCAACGGGTTA+CGG - tig0028330:8111-8130 Msa1437530:three_prime_UTR 55.0%
TGGATGGAGAAGGAGGAGAG+TGG + tig0028330:8589-8608 None:intergenic 55.0%
!! GAGTATGCAGCGGTGATGGA+TGG + tig0028330:8605-8624 None:intergenic 55.0%
!! TTTTTGTCTGGCTCCGCCAC+TGG - tig0028330:9354-9373 Msa1437530:intron 55.0%
! CGCCACTGGTTGTTTGTGTG+AGG - tig0028330:9368-9387 Msa1437530:intron 55.0%
! GGTGGTTTAGTTCGGGTCTG+CGG + tig0028330:9744-9763 None:intergenic 55.0%
AGTGAGGGGCTTATCACGCT+TGG + tig0028330:10113-10132 None:intergenic 55.0%
TGATCCTGTTCATGGACCCG+TGG - tig0028330:10171-10190 Msa1437530:intron 55.0%
GTTACCACGGGTCCATGAAC+AGG + tig0028330:10178-10197 None:intergenic 55.0%
GCGTTTGATGTCTTGCTGCC+GGG - tig0028330:10398-10417 Msa1437530:intron 55.0%
CGGCTTTCCTACAGTGGTAG+CGG - tig0028330:12145-12164 Msa1437530:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - tig0028330:12881-12900 Msa1437530:intron 55.0%
! ACCTTGTGTGACGAGGCACT+TGG - tig0028330:14028-14047 Msa1437530:intron 55.0%
ACCAAGTGCCTCGTCACACA+AGG + tig0028330:14032-14051 None:intergenic 55.0%
! GTGTGACGAGGCACTTGGTT+TGG - tig0028330:14033-14052 Msa1437530:intron 55.0%
GAGAAGGAGGAGAGTGGTCG+CGG + tig0028330:8583-8602 None:intergenic 60.0%
!! GCGGTGATGGATGGAGAAGG+AGG + tig0028330:8596-8615 None:intergenic 60.0%
!! GCAGCGGTGATGGATGGAGA+AGG + tig0028330:8599-8618 None:intergenic 60.0%
! GGAGGAGTATGCAGCGGTGA+TGG + tig0028330:8609-8628 None:intergenic 60.0%
GTGGTGAGACCTGAGACGTG+TGG - tig0028330:9505-9524 Msa1437530:intron 60.0%
!! CGGTCGGTGTTGGGTTTGGA+TGG - tig0028330:9651-9670 Msa1437530:intron 60.0%
GTTCGGGTCTGCGGTTCAAC+AGG + tig0028330:9735-9754 None:intergenic 60.0%
TTGATGTCTTGCTGCCGGGC+CGG - tig0028330:10402-10421 Msa1437530:intron 60.0%
AGCGCAAGCACCAGTGTGGA+GGG + tig0028330:12084-12103 None:intergenic 60.0%
ACTGGGACCGCTACCACTGT+AGG + tig0028330:12155-12174 None:intergenic 60.0%
GTCACCACGAGTGTGCATCG+CGG - tig0028330:12510-12529 Msa1437530:intron 60.0%
! GGCGCCATGGCCATTTGCTG+TGG - tig0028330:8383-8402 Msa1437530:intron 65.0%
ATCCACCACCACACCACCGC+TGG - tig0028330:8553-8572 Msa1437530:CDS 65.0%
TGATGTCTTGCTGCCGGGCC+GGG - tig0028330:10403-10422 Msa1437530:intron 65.0%
CAGCGCAAGCACCAGTGTGG+AGG + tig0028330:12085-12104 None:intergenic 65.0%
CTCCACACTGGTGCTTGCGC+TGG - tig0028330:12083-12102 Msa1437530:intron 65.0%
GACCAGCGCAAGCACCAGTG+TGG + tig0028330:12088-12107 None:intergenic 65.0%
ACCACGAGTGTGCATCGCGG+TGG - tig0028330:12513-12532 Msa1437530:intron 65.0%
ACCACCGCGATGCACACTCG+TGG + tig0028330:12517-12536 None:intergenic 65.0%
CACCAGCGGTGGTGTGGTGG+TGG + tig0028330:8558-8577 None:intergenic 70.0%
GCTCACCAGCGGTGGTGTGG+TGG + tig0028330:8561-8580 None:intergenic 70.0%
GAGTGGTCGCGGCTCACCAG+CGG + tig0028330:8572-8591 None:intergenic 70.0%
! CGGTCGGATTCGGTCGGCCG+CGG - tig0028330:8007-8026 Msa1437530:three_prime_UTR 75.0%
GCGGCTCACCAGCGGTGGTG+TGG + tig0028330:8564-8583 None:intergenic 75.0%
TGGTCGCGGCTCACCAGCGG+TGG + tig0028330:8569-8588 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028330 gene 7791 14145 7791 ID=Msa1437530;Name=Msa1437530
tig0028330 mRNA 7791 14145 7791 ID=Msa1437530-mRNA-1;Parent=Msa1437530;Name=Msa1437530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=357|1|1|1|0.5|0.6|5|362|147
tig0028330 exon 7791 8307 7791 ID=Msa1437530-mRNA-1:exon:10752;Parent=Msa1437530-mRNA-1
tig0028330 exon 8524 8626 8524 ID=Msa1437530-mRNA-1:exon:10751;Parent=Msa1437530-mRNA-1
tig0028330 exon 11744 11948 11744 ID=Msa1437530-mRNA-1:exon:10750;Parent=Msa1437530-mRNA-1
tig0028330 exon 13242 13475 13242 ID=Msa1437530-mRNA-1:exon:10749;Parent=Msa1437530-mRNA-1
tig0028330 exon 14042 14145 14042 ID=Msa1437530-mRNA-1:exon:10748;Parent=Msa1437530-mRNA-1
tig0028330 five_prime_UTR 14042 14145 14042 ID=Msa1437530-mRNA-1:five_prime_utr;Parent=Msa1437530-mRNA-1
tig0028330 five_prime_UTR 13242 13475 13242 ID=Msa1437530-mRNA-1:five_prime_utr;Parent=Msa1437530-mRNA-1
tig0028330 five_prime_UTR 11930 11948 11930 ID=Msa1437530-mRNA-1:five_prime_utr;Parent=Msa1437530-mRNA-1
tig0028330 CDS 11744 11929 11744 ID=Msa1437530-mRNA-1:cds;Parent=Msa1437530-mRNA-1
tig0028330 CDS 8524 8626 8524 ID=Msa1437530-mRNA-1:cds;Parent=Msa1437530-mRNA-1
tig0028330 CDS 8153 8307 8153 ID=Msa1437530-mRNA-1:cds;Parent=Msa1437530-mRNA-1
tig0028330 three_prime_UTR 7791 8152 7791 ID=Msa1437530-mRNA-1:three_prime_utr;Parent=Msa1437530-mRNA-1
Gene Sequence

>Msa1437530

ATGGCAAATAACACACAAGATTCGTCTTCCCAGTCATTCTGGGAAGGCTACAAAGAGTTTTGGGGCGAGAGATTTTCCTTTATGACCAATTATTCCAACTTCACCAAGCGTGATAAGCCCCTCACTTCATGGTCTAACTCTGATGTTGAGGACTTTATCGCTTCTGATCCTGTTCATGGACCCGTGCTTAAAACTGCTAGAGAAGCAGTGCAATATGGTCTTGCAGGAAGTGCTTTGGGAGCGTTATTCACCGCAAGTTTTGCATGGAAATATTCAAGGAGTTTACATGGTGCTGGTCTGTCCTTTTTAGCTGGAGGTGTATTTGGGTGGACATATGGACATGAAATCGCAAATCATGCACTTCAACTTTACAGGGTAGACACATTGGCTTCTGAGGCTAAGTTTCTGGAGTGGTGGAAAAGGAAGACCGAAGGAGGGAATTGA
Protein sequence

>Msa1437530

MANNTQDSSSQSFWEGYKEFWGERFSFMTNYSNFTKRDKPLTSWSNSDVEDFIASDPVHGPVLKTAREAVQYGLAGSALGALFTASFAWKYSRSLHGAGLSFLAGGVFGWTYGHEIANHALQLYRVDTLASEAKFLEWWKRKTEGGN*