AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438140 MtrunA17_Chr1g0188431 97.554 327 7 1 1 326 1 327 0.0 661
Msa1438140 MtrunA17_Chr6g0477071 63.492 315 114 1 13 326 28 342 9.32e-149 422
Msa1438140 MtrunA17_Chr5g0405991 46.440 323 157 4 13 326 1 316 1.01e-100 299
Msa1438140 MtrunA17_Chr8g0371381 48.173 301 143 3 35 326 23 319 5.43e-97 289
Msa1438140 MtrunA17_Chr1g0157051 46.032 315 154 5 17 322 7 314 3.82e-95 285
Msa1438140 MtrunA17_Chr1g0204011 47.315 298 146 3 38 326 27 322 1.30e-92 278
Msa1438140 MtrunA17_Chr3g0128061 46.512 301 149 5 38 326 26 326 5.12e-87 264
Msa1438140 MtrunA17_Chr1g0194151 44.237 321 164 7 21 326 13 333 2.08e-86 263
Msa1438140 MtrunA17_Chr3g0129051 42.593 324 170 6 10 326 8 322 7.52e-86 261
Msa1438140 MtrunA17_Chr4g0024121 44.000 300 157 3 38 326 27 326 2.26e-85 260
Msa1438140 MtrunA17_Chr7g0268501 42.056 321 172 6 17 326 3 320 3.96e-84 256
Msa1438140 MtrunA17_Chr7g0268521 42.056 321 172 6 17 326 3 320 3.96e-84 256
Msa1438140 MtrunA17_Chr1g0194271 42.378 328 167 7 21 326 13 340 7.16e-84 256
Msa1438140 MtrunA17_Chr3g0114451 45.578 294 154 5 38 326 26 318 1.23e-83 255
Msa1438140 MtrunA17_Chr1g0213061 40.867 323 182 6 11 326 1 321 4.40e-82 252
Msa1438140 MtrunA17_Chr7g0244461 43.408 311 169 6 21 326 4 312 4.43e-82 251
Msa1438140 MtrunA17_Chr5g0432441 41.964 336 175 7 1 326 1 326 5.21e-82 251
Msa1438140 MtrunA17_Chr7g0254231 42.712 295 162 3 36 326 20 311 6.40e-82 251
Msa1438140 MtrunA17_Chr4g0068621 45.033 302 156 6 35 326 35 336 4.19e-81 249
Msa1438140 MtrunA17_Chr3g0106921 42.320 319 167 6 16 326 11 320 4.65e-81 249
Msa1438140 MtrunA17_Chr7g0224371 42.947 319 175 5 14 326 5 322 4.60e-80 246
Msa1438140 MtrunA17_Chr7g0254201 42.517 294 163 3 38 326 20 312 5.80e-80 246
Msa1438140 MtrunA17_Chr2g0322861 38.182 330 189 7 9 326 60 386 9.85e-80 248
Msa1438140 MtrunA17_Chr5g0402571 42.000 300 163 4 38 326 27 326 1.02e-79 245
Msa1438140 MtrunA17_Chr5g0432351 44.631 298 155 7 38 326 25 321 1.78e-79 245
Msa1438140 MtrunA17_Chr5g0438021 41.615 322 177 6 12 326 8 325 1.87e-79 245
Msa1438140 MtrunA17_Chr3g0106901 44.409 313 163 6 19 326 17 323 2.17e-79 244
Msa1438140 MtrunA17_Chr7g0244451 42.105 323 173 6 9 326 3 316 3.65e-79 244
Msa1438140 MtrunA17_Chr5g0402581 41.000 300 166 4 38 326 27 326 1.21e-78 243
Msa1438140 MtrunA17_Chr3g0129061 41.975 324 172 6 10 326 8 322 1.32e-78 243
Msa1438140 MtrunA17_Chr1g0164891 44.333 300 152 7 42 326 93 392 1.63e-78 244
Msa1438140 MtrunA17_Chr5g0432341 43.624 298 158 7 38 326 25 321 1.83e-78 242
Msa1438140 MtrunA17_Chr2g0292091 41.391 302 164 5 38 326 24 325 6.33e-77 239
Msa1438140 MtrunA17_Chr7g0258811 41.584 303 163 6 38 326 69 371 8.91e-77 239
Msa1438140 MtrunA17_Chr1g0175561 42.295 305 162 6 36 326 22 326 2.33e-76 237
Msa1438140 MtrunA17_Chr6g0460711 39.815 324 179 5 9 326 1 314 2.46e-76 236
Msa1438140 MtrunA17_Chr2g0320071 39.185 319 187 6 13 326 1 317 3.07e-76 236
Msa1438140 MtrunA17_Chr2g0292101 41.060 302 165 5 38 326 25 326 5.78e-76 236
Msa1438140 MtrunA17_Chr4g0013721 42.809 299 159 5 38 326 100 396 7.67e-76 238
Msa1438140 MtrunA17_Chr4g0013171 40.741 297 168 6 37 326 26 321 8.88e-76 235
Msa1438140 MtrunA17_Chr4g0013191 43.643 291 158 4 42 326 50 340 1.80e-75 235
Msa1438140 MtrunA17_Chr4g0013181 41.638 293 163 6 41 326 62 353 2.25e-75 235
Msa1438140 MtrunA17_Chr4g0013821 42.140 299 161 5 38 326 28 324 2.47e-75 235
Msa1438140 MtrunA17_Chr1g0155611 41.914 303 163 6 37 326 45 347 4.24e-75 234
Msa1438140 MtrunA17_Chr4g0038151 40.000 325 180 6 10 326 4 321 4.65e-75 233
Msa1438140 MtrunA17_Chr5g0404721 40.514 311 173 6 28 326 20 330 5.05e-75 234
Msa1438140 MtrunA17_Chr5g0432331 41.946 298 163 7 38 326 56 352 2.84e-74 233
Msa1438140 MtrunA17_Chr6g0467161 40.476 294 170 3 37 326 44 336 3.15e-74 232
Msa1438140 MtrunA17_Chr4g0013201 43.197 294 161 5 38 326 46 338 4.30e-74 231
Msa1438140 MtrunA17_Chr2g0291751 39.697 330 179 7 17 326 1 330 7.15e-74 231
Msa1438140 MtrunA17_Chr2g0279041 39.542 306 169 5 34 326 23 325 9.71e-74 230
Msa1438140 MtrunA17_Chr3g0129041 40.741 324 176 6 10 326 8 322 9.89e-74 230
Msa1438140 MtrunA17_Chr5g0400331 42.810 306 158 7 38 326 26 331 1.84e-73 229
Msa1438140 MtrunA17_Chr6g0467251 42.414 290 163 2 37 322 35 324 2.51e-73 230
Msa1438140 MtrunA17_Chr2g0320091 40.068 292 168 6 41 326 28 318 2.53e-73 229
Msa1438140 MtrunA17_Chr8g0364291 42.475 299 159 5 41 326 26 324 6.16e-73 228
Msa1438140 MtrunA17_Chr4g0038161 39.077 325 182 5 10 326 4 320 8.92e-73 228
Msa1438140 MtrunA17_Chr7g0225221 38.110 328 186 7 7 326 2 320 1.29e-72 227
Msa1438140 MtrunA17_Chr1g0197411 39.634 328 180 8 13 326 7 330 1.34e-72 228
Msa1438140 MtrunA17_Chr5g0401431 41.060 302 164 5 38 325 27 328 1.60e-72 227
Msa1438140 MtrunA17_Chr2g0320101 40.893 291 166 5 41 326 28 317 3.66e-72 226
Msa1438140 MtrunA17_Chr4g0043391 38.485 330 186 6 6 326 3 324 4.87e-72 226
Msa1438140 MtrunA17_Chr5g0421411 44.086 279 140 7 64 326 7 285 5.36e-72 224
Msa1438140 MtrunA17_Chr6g0467121 41.216 296 163 6 37 326 73 363 6.10e-72 228
Msa1438140 MtrunA17_Chr2g0292261 38.486 317 182 5 23 326 14 330 6.16e-72 226
Msa1438140 MtrunA17_Chr2g0296621 39.865 296 167 4 38 326 50 341 2.78e-71 224
Msa1438140 MtrunA17_Chr8g0372601 40.584 308 163 6 35 326 27 330 5.40e-71 223
Msa1438140 MtrunA17_Chr2g0292151 39.275 331 179 8 17 326 1 330 7.62e-71 224
Msa1438140 MtrunA17_Chr2g0320051 38.509 322 186 8 13 326 1 318 1.55e-70 222
Msa1438140 MtrunA17_Chr4g0038171 41.611 298 165 5 38 326 24 321 2.53e-70 221
Msa1438140 MtrunA17_Chr2g0292211 37.647 340 192 8 7 326 2 341 2.77e-70 223
Msa1438140 MtrunA17_Chr2g0299691 42.857 301 154 8 42 326 60 358 5.79e-70 221
Msa1438140 MtrunA17_Chr4g0070951 39.938 323 175 8 19 326 11 329 7.32e-70 220
Msa1438140 MtrunA17_Chr2g0292241 38.170 317 183 6 23 326 14 330 9.55e-70 221
Msa1438140 MtrunA17_Chr4g0063671 39.274 303 167 4 38 326 21 320 1.16e-69 219
Msa1438140 MtrunA17_Chr2g0320061 37.812 320 191 7 13 326 1 318 2.09e-69 219
Msa1438140 MtrunA17_Chr2g0292271 37.618 319 179 6 28 326 12 330 2.83e-69 219
Msa1438140 MtrunA17_Chr2g0292111 38.066 331 183 8 17 326 1 330 7.63e-69 218
Msa1438140 MtrunA17_Chr2g0292181 36.533 323 192 6 17 326 17 339 1.44e-68 218
Msa1438140 MtrunA17_Chr4g0046131 39.474 342 186 9 2 322 1 342 3.69e-68 216
Msa1438140 MtrunA17_Chr4g0053871 37.540 309 184 5 23 322 12 320 1.22e-67 214
Msa1438140 MtrunA17_Chr2g0292251 37.987 308 178 6 32 326 22 329 2.44e-67 214
Msa1438140 MtrunA17_Chr3g0107881 40.134 299 168 8 38 326 27 324 3.84e-67 213
Msa1438140 MtrunA17_Chr2g0320031 36.250 320 197 6 13 326 1 319 3.99e-67 213
Msa1438140 MtrunA17_Chr1g0148021 36.923 325 185 7 16 326 10 328 4.50e-67 213
Msa1438140 MtrunA17_Chr6g0451571 39.934 303 166 6 38 326 34 334 5.77e-67 213
Msa1438140 MtrunA17_Chr2g0292291 36.792 318 187 5 23 326 15 332 1.26e-65 210
Msa1438140 MtrunA17_Chr4g0076211 37.627 295 174 3 39 326 42 333 5.76e-65 208
Msa1438140 MtrunA17_Chr4g0072091 37.954 303 171 6 38 326 24 323 3.84e-62 200
Msa1438140 MtrunA17_Chr3g0136751 36.254 331 187 7 11 326 1 322 1.72e-60 196
Msa1438140 MtrunA17_Chr4g0075241 36.508 315 189 5 23 326 13 327 2.19e-60 196
Msa1438140 MtrunA17_Chr2g0278671 37.748 302 173 7 38 326 24 323 3.54e-60 195
Msa1438140 MtrunA17_Chr5g0413051 37.134 307 177 6 36 326 71 377 4.89e-60 196
Msa1438140 MtrunA17_Chr2g0316481 34.835 333 175 6 35 325 73 405 5.69e-60 197
Msa1438140 MtrunA17_Chr2g0311251 34.535 333 175 7 35 325 8 339 7.24e-59 192
Msa1438140 MtrunA17_Chr2g0329641 37.954 303 171 4 38 326 36 335 1.22e-58 192
Msa1438140 MtrunA17_Chr2g0316191 34.524 336 173 7 35 325 73 406 2.97e-58 192
Msa1438140 MtrunA17_Chr2g0316791 33.934 333 178 7 35 325 73 405 5.61e-58 192
Msa1438140 MtrunA17_Chr2g0316831 34.627 335 173 7 35 325 109 441 7.13e-58 192
Msa1438140 MtrunA17_Chr5g0432401 38.047 297 135 8 38 325 29 285 6.42e-56 183
Msa1438140 MtrunA17_Chr4g0074851 34.014 294 186 3 37 322 31 324 1.00e-55 184
Msa1438140 MtrunA17_Chr2g0279061 38.760 258 142 5 82 326 12 266 5.83e-54 177
Msa1438140 MtrunA17_Chr2g0311241 30.481 374 176 7 35 325 57 429 5.88e-54 182
Msa1438140 MtrunA17_Chr1g0181431 31.313 297 196 3 38 326 27 323 6.00e-50 169
Msa1438140 MtrunA17_Chr1g0181511 30.976 297 197 3 38 326 27 323 3.57e-48 164
Msa1438140 MtrunA17_Chr4g0004591 32.390 318 146 6 38 325 77 355 5.21e-46 159
Msa1438140 MtrunA17_Chr1g0181481 30.640 297 198 3 38 326 27 323 9.90e-46 158
Msa1438140 MtrunA17_Chr2g0316811 36.283 226 120 4 35 236 47 272 3.66e-40 143
Msa1438140 MtrunA17_Chr3g0114461 42.391 184 100 5 148 326 10 192 5.45e-40 139
Msa1438140 MtrunA17_Chr2g0292281 37.198 207 114 5 129 326 17 216 1.49e-37 134
Msa1438140 MtrunA17_Chr2g0316141 30.824 279 144 6 84 325 11 277 4.54e-36 131
Msa1438140 MtrunA17_Chr2g0316181 30.824 279 144 6 84 325 11 277 4.54e-36 131
Msa1438140 MtrunA17_Chr3g0114491 50.000 110 54 1 38 146 18 127 1.72e-29 110
Msa1438140 MtrunA17_Chr5g0432321 43.590 117 62 3 158 271 17 132 3.33e-24 95.9
Msa1438140 MtrunA17_Chr7g0254181 41.463 123 69 2 81 202 2 122 5.07e-23 93.2
Msa1438140 MtrunA17_Chr6g0468731 55.882 68 27 1 77 144 22 86 3.26e-20 84.0
Msa1438140 MtrunA17_Chr1g0181491 35.135 111 71 1 34 144 8 117 4.39e-20 85.1
Msa1438140 MtrunA17_Chr3g0137751 30.469 256 109 8 69 305 105 310 1.69e-19 87.4
Msa1438140 MtrunA17_Chr1g0196191 54.167 72 33 0 73 144 20 91 2.06e-19 83.6
Msa1438140 MtrunA17_Chr1g0181501 28.877 187 124 4 148 326 4 189 3.04e-17 78.6
Msa1438140 MtrunA17_Chr3g0104101 37.589 141 74 5 200 326 9 149 3.08e-17 77.4
Msa1438140 MtrunA17_Chr7g0254171 45.205 73 40 0 83 155 3 75 6.46e-17 76.3
Msa1438140 MtrunA17_Chr3g0124821 29.389 262 138 11 72 311 121 357 1.61e-14 73.6
Msa1438140 MtrunA17_Chr5g0405731 27.407 270 144 9 50 308 14 242 2.91e-14 72.0
Msa1438140 MtrunA17_Chr4g0037131 28.261 276 134 12 50 308 15 243 3.55e-14 71.6
Msa1438140 MtrunA17_Chr7g0268491 40.541 74 43 1 253 326 25 97 1.15e-12 63.2
Msa1438140 MtrunA17_Chr4g0013811 42.254 71 40 1 148 217 6 76 4.77e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438140 AT4G33420.1 72.013 318 85 2 10 326 11 325 4.68e-170 475
Msa1438140 AT4G33420.2 72.013 318 85 2 10 326 58 372 1.88e-169 476
Msa1438140 AT5G42180.1 46.980 298 146 3 37 325 22 316 6.90e-96 287
Msa1438140 AT5G51890.1 45.847 301 151 3 36 326 24 322 2.08e-92 278
Msa1438140 AT4G11290.1 45.364 302 152 8 38 326 25 326 4.59e-89 270
Msa1438140 AT1G05260.1 45.847 301 150 6 38 326 26 325 1.37e-86 263
Msa1438140 AT4G16270.1 48.544 309 145 7 30 326 42 348 6.37e-85 260
Msa1438140 AT4G36430.1 42.623 305 163 6 34 326 26 330 6.97e-84 256
Msa1438140 AT3G03670.1 42.475 299 162 4 38 326 23 321 1.28e-82 253
Msa1438140 AT5G05340.1 43.581 296 159 5 38 326 30 324 1.51e-79 245
Msa1438140 AT2G18140.1 39.403 335 182 8 13 326 1 335 2.01e-79 245
Msa1438140 AT2G35380.1 41.246 337 177 7 9 326 1 335 3.99e-79 244
Msa1438140 AT1G68850.1 41.071 336 176 9 12 326 1 335 4.39e-79 244
Msa1438140 AT2G18150.1 38.872 337 182 8 13 326 1 336 7.12e-79 244
Msa1438140 AT5G66390.1 39.339 333 189 7 6 326 2 333 1.56e-78 243
Msa1438140 AT5G17820.1 40.938 320 168 6 14 326 8 313 1.98e-78 242
Msa1438140 AT1G71695.1 40.404 297 170 4 37 326 43 339 4.20e-78 243
Msa1438140 AT3G21770.1 41.751 297 160 6 38 322 29 324 5.32e-78 241
Msa1438140 AT5G06730.1 41.176 323 174 9 19 326 13 334 7.14e-78 242
Msa1438140 AT5G19890.1 42.813 327 167 8 15 326 6 327 8.40e-78 241
Msa1438140 AT5G06720.1 40.881 318 174 6 22 326 17 333 1.19e-77 241
Msa1438140 AT5G64120.1 39.597 298 169 3 37 326 34 328 1.57e-77 240
Msa1438140 AT5G17820.2 40.938 320 168 6 14 326 61 366 1.82e-77 241
Msa1438140 AT5G39580.1 38.700 323 185 5 13 326 1 319 3.54e-77 239
Msa1438140 AT5G19880.1 40.653 337 173 7 6 326 4 329 1.01e-76 238
Msa1438140 AT1G44970.1 39.306 346 180 8 11 326 1 346 1.09e-76 239
Msa1438140 AT3G01190.1 42.244 303 156 6 37 326 25 321 4.53e-76 236
Msa1438140 AT5G58390.1 42.638 326 168 7 9 326 2 316 1.14e-75 235
Msa1438140 AT1G05240.1 40.728 302 156 6 38 322 26 321 1.19e-75 235
Msa1438140 AT1G05250.1 40.728 302 156 6 38 322 26 321 1.19e-75 235
Msa1438140 AT3G28200.1 43.243 296 161 4 38 326 21 316 3.43e-75 234
Msa1438140 AT2G22420.1 39.692 325 178 6 12 326 3 319 4.26e-75 234
Msa1438140 AT5G15180.1 39.458 332 183 7 8 326 3 329 2.95e-74 232
Msa1438140 AT3G50990.1 37.537 341 198 6 1 326 1 341 6.72e-74 231
Msa1438140 AT1G49570.1 42.997 307 159 7 31 322 41 346 1.00e-73 231
Msa1438140 AT5G58400.1 42.424 297 162 5 38 326 30 325 2.16e-73 229
Msa1438140 AT1G77100.1 38.365 318 186 6 17 326 4 319 1.90e-72 227
Msa1438140 AT4G26010.1 40.206 291 169 4 38 326 22 309 2.29e-72 226
Msa1438140 AT5G40150.1 41.967 305 169 5 30 326 24 328 3.15e-72 227
Msa1438140 AT4G26010.2 38.272 324 187 5 5 326 25 337 3.23e-72 227
Msa1438140 AT4G17690.1 41.414 297 166 4 38 326 26 322 1.04e-71 225
Msa1438140 AT2G24800.1 40.066 302 165 5 38 326 31 329 1.29e-71 225
Msa1438140 AT2G41480.1 41.254 303 161 6 38 326 29 328 2.02e-71 224
Msa1438140 AT1G14550.1 39.264 326 182 7 8 326 5 321 5.63e-71 223
Msa1438140 AT1G14540.1 41.554 296 165 6 38 326 21 315 8.90e-71 223
Msa1438140 AT4G31760.1 37.874 301 172 4 38 326 29 326 2.13e-69 219
Msa1438140 AT4G33870.1 36.145 332 167 4 38 324 68 399 2.38e-68 219
Msa1438140 AT2G38380.1 40.789 304 164 8 38 326 31 333 2.45e-68 218
Msa1438140 AT5G47000.1 40.940 298 167 5 38 326 33 330 3.46e-68 216
Msa1438140 AT4G08770.1 40.789 304 165 6 38 326 24 327 8.36e-68 216
Msa1438140 AT4G08780.1 40.461 304 166 6 38 326 24 327 1.08e-67 216
Msa1438140 AT1G34510.1 36.760 321 188 6 9 326 1 309 6.73e-67 213
Msa1438140 AT2G39040.1 39.423 312 167 8 34 326 42 350 8.06e-67 213
Msa1438140 AT5G14130.1 38.870 301 170 6 38 326 32 330 2.85e-66 211
Msa1438140 AT5G14130.2 38.870 301 170 6 38 326 73 371 3.79e-66 213
Msa1438140 AT4G25980.1 37.188 320 184 7 21 326 10 326 4.59e-66 211
Msa1438140 AT2G38390.1 39.145 304 169 8 38 326 31 333 2.27e-65 210
Msa1438140 AT2G18980.1 36.760 321 185 6 20 326 7 323 2.90e-65 209
Msa1438140 AT3G49110.1 39.474 304 169 6 38 326 33 336 2.12e-64 207
Msa1438140 AT3G49120.1 39.474 304 169 6 38 326 32 335 3.53e-64 207
Msa1438140 AT2G34060.1 39.073 302 168 8 38 323 42 343 3.77e-64 206
Msa1438140 AT3G32980.1 39.344 305 168 7 38 326 31 334 9.38e-63 203
Msa1438140 AT5G64100.1 36.308 325 189 6 16 326 11 331 1.27e-62 202
Msa1438140 AT4G37530.1 36.304 303 179 5 38 326 27 329 4.74e-62 201
Msa1438140 AT4G37520.1 36.304 303 179 5 38 326 27 329 5.63e-62 200
Msa1438140 AT1G30870.1 37.584 298 174 4 38 326 51 345 8.53e-61 198
Msa1438140 AT3G49960.1 37.294 303 176 6 38 326 27 329 3.09e-60 196
Msa1438140 AT5G22410.1 37.539 317 179 8 21 323 11 322 3.38e-60 196
Msa1438140 AT4G37520.2 35.974 303 177 6 38 326 27 326 7.57e-60 195
Msa1438140 AT5G67400.1 35.258 329 194 6 17 326 1 329 8.67e-60 195
Msa1438140 AT4G30170.1 34.983 303 179 6 38 326 27 325 6.71e-59 192
Msa1438140 AT5G64110.1 37.710 297 169 7 42 326 38 330 2.16e-58 191
Msa1438140 AT1G24110.1 36.877 301 178 6 38 326 22 322 6.29e-56 185
Msa1438140 AT3G17070.1 34.983 303 184 4 37 326 37 339 5.59e-55 182
Msa1438140 AT2G35380.2 42.915 247 120 7 99 326 3 247 2.73e-54 178
Msa1438140 AT4G21960.1 33.557 298 190 3 37 326 30 327 2.28e-53 178
Msa1438140 AT5G24070.1 34.426 305 180 5 38 326 35 335 8.31e-53 177
Msa1438140 AT2G43480.1 33.115 305 184 5 38 326 35 335 1.05e-50 171
Msa1438140 AT4G37530.2 37.154 253 145 5 38 276 27 279 1.16e-50 170
Msa1438140 AT2G37130.1 32.131 305 197 5 32 326 23 327 4.74e-49 167
Msa1438140 AT2G37130.2 31.757 296 193 4 40 326 1 296 7.54e-48 163
Msa1438140 AT5G39580.2 40.625 192 110 2 13 204 1 188 4.68e-47 159
Msa1438140 AT4G25980.2 41.436 181 103 2 23 203 57 234 1.26e-46 159
Msa1438140 AT2G24800.2 45.455 165 86 2 38 201 31 192 1.19e-44 153
Msa1438140 AT3G17070.2 31.752 274 173 5 66 326 4 276 3.80e-39 139
Msa1438140 AT4G32320.1 28.467 274 127 10 50 305 97 319 8.12e-17 80.5
Msa1438140 AT1G77490.2 29.344 259 142 11 72 311 106 342 7.86e-16 78.2
Msa1438140 AT1G77490.1 29.344 259 142 11 72 311 106 342 9.13e-16 78.2
Msa1438140 AT4G35970.1 29.259 270 138 10 50 308 13 240 1.25e-14 73.6
Msa1438140 AT4G35970.2 29.600 250 123 10 50 288 13 220 4.16e-12 65.1
Msa1438140 AT3G42570.1 30.556 108 71 2 99 203 43 149 1.59e-11 62.0

Find 88 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCTTCAAGGAATTA+AGG 0.209932 tig0028517:-3544 None:intergenic
CTTCCATCCTTTCTACCTTT+AGG 0.226072 tig0028517:-4875 None:intergenic
TTCACAATGTTCCTTGTTAT+AGG 0.269838 tig0028517:-5348 None:intergenic
AAGGGTATTTATATTTATAA+AGG 0.274203 tig0028517:-3525 None:intergenic
TATACAAGTTCTAAGTTCTT+AGG 0.280598 tig0028517:+3479 Msa1438140:five_prime_UTR
ATCATCTAAGTCATTGAAAA+TGG 0.290977 tig0028517:+3571 Msa1438140:CDS
ATTACATGCCAATTTGGATT+TGG 0.293555 tig0028517:+3635 Msa1438140:CDS
TCACAATGTTCCTTGTTATA+GGG 0.299314 tig0028517:-5347 None:intergenic
TGCCAATTTGGATTTGGATT+TGG 0.315888 tig0028517:+3641 Msa1438140:CDS
CCATGGCTTGTTGAAAATCT+AGG 0.323135 tig0028517:-5401 None:intergenic
CTCCAAATCCAAATCCAAAT+TGG 0.325664 tig0028517:-3643 None:intergenic
TTATAAAGGAATATAAAGTT+TGG 0.338616 tig0028517:-3511 None:intergenic
GAGGTGATTACATGCCAATT+TGG 0.350555 tig0028517:+3629 Msa1438140:CDS
CTATCAAGAACATGTACTTC+TGG 0.371534 tig0028517:+5210 Msa1438140:CDS
CATCATCTTCAAGGAATTAA+GGG 0.383692 tig0028517:-3543 None:intergenic
TTCACTATGTCCTTAACAAC+TGG 0.383944 tig0028517:-3713 None:intergenic
CCTCTCAGGCTCAAATTTGC+TGG 0.400018 tig0028517:-4468 None:intergenic
TTAACAACTGGTTCAACAAA+AGG 0.406122 tig0028517:-3701 None:intergenic
TTCTGCTGTATTATCCTTGG+TGG 0.414172 tig0028517:-4436 None:intergenic
TCAACAAGCCATGGTGAAGA+TGG 0.422355 tig0028517:+5410 Msa1438140:CDS
TCCGAGCTCATCACGCAGTT+TGG 0.424446 tig0028517:+4950 Msa1438140:CDS
TGCTCTAAATTGTTTATGTC+GGG 0.426853 tig0028517:+5626 Msa1438140:three_prime_UTR
CAAGGATAATACAGCAGAAA+AGG 0.428327 tig0028517:+4440 Msa1438140:CDS
ATGTGCTGATATTCTTGCTA+TGG 0.434317 tig0028517:+4551 Msa1438140:CDS
CAATTTGGATTTGGATTTGG+AGG 0.436860 tig0028517:+3644 Msa1438140:CDS
TATATATAGTGGGGAATAGT+TGG 0.438298 tig0028517:-3460 None:intergenic
CTTTCATGACTGCTTCATAC+AGG 0.438987 tig0028517:+3787 Msa1438140:CDS
GGACATAGTGAATAGAGCTT+TGG 0.440304 tig0028517:+3724 Msa1438140:CDS
AAGCCAAGCGGATCCAGCTT+TGG 0.440334 tig0028517:+5167 Msa1438140:CDS
TTTGTTCACTAGGGATGTGA+TGG 0.441969 tig0028517:+4396 Msa1438140:intron
CAAGAGATGGTCGCTCTATC+CGG 0.442185 tig0028517:+4992 Msa1438140:CDS
CTTAGAACTTGTATATATAG+TGG 0.446801 tig0028517:-3471 None:intergenic
CTTTGGATTCAGAATTTGCC+AGG 0.451170 tig0028517:+5184 Msa1438140:CDS
ATTTGCTCGTACTTCACCAT+TGG 0.458895 tig0028517:-5457 None:intergenic
TTGGATTTGGATTTGGAGGA+GGG 0.459339 tig0028517:+3648 Msa1438140:CDS
TGATTTATACATCATCTTCA+AGG 0.460824 tig0028517:-3552 None:intergenic
TCGTTCCTAGTTGCATCAAA+TGG 0.467823 tig0028517:-5249 None:intergenic
CAATGACTTCGTATCCTCTC+AGG 0.480540 tig0028517:-4482 None:intergenic
CAACAAGCCATGGTGAAGAT+GGG 0.482582 tig0028517:+5411 Msa1438140:CDS
TTGCTCTAAATTGTTTATGT+CGG 0.484906 tig0028517:+5625 Msa1438140:three_prime_UTR
TAAGTCATTGAAAATGGTAA+TGG 0.491999 tig0028517:+3577 Msa1438140:CDS
TAACATACCTAAAGGTAGAA+AGG 0.492130 tig0028517:+4868 Msa1438140:CDS
TTAGAACTTGTATATATAGT+GGG 0.492746 tig0028517:-3470 None:intergenic
TAGGGCTAGAGTATAGTGTT+TGG 0.499317 tig0028517:-5329 None:intergenic
TCTAAATTGTTTATGTCGGG+TGG 0.501108 tig0028517:+5629 Msa1438140:three_prime_UTR
TTTGGATTTGGATTTGGAGG+AGG 0.503421 tig0028517:+3647 Msa1438140:CDS
TAAATTGTTTATGTCGGGTG+GGG 0.505411 tig0028517:+5631 Msa1438140:three_prime_UTR
GCAAATTCTGAATCCAAAGC+TGG 0.507065 tig0028517:-5180 None:intergenic
CTAAATTGTTTATGTCGGGT+GGG 0.521989 tig0028517:+5630 Msa1438140:three_prime_UTR
TAACAACTGGTTCAACAAAA+GGG 0.527365 tig0028517:-3700 None:intergenic
TCAGCACATGAAACCACGCC+AGG 0.530493 tig0028517:-4537 None:intergenic
GAGCTTGAAAACCGATGCCC+TGG 0.541064 tig0028517:+4519 Msa1438140:CDS
CCAGTGTATAACATACCTAA+AGG 0.544678 tig0028517:+4860 Msa1438140:CDS
TTCTTATAAGAGCAGCTGCA+AGG 0.544991 tig0028517:-3760 None:intergenic
AATCTAGGAAGAACATGGCT+TGG 0.545440 tig0028517:-5386 None:intergenic
GATATTAAACAAGGTTCCAA+TGG 0.546015 tig0028517:+5441 Msa1438140:CDS
ATCACGCAGTTTGGTCAACA+TGG 0.546453 tig0028517:+4959 Msa1438140:CDS
ATACCTAAAGGTAGAAAGGA+TGG 0.552044 tig0028517:+4872 Msa1438140:CDS
AGCTCGGATGCATTAAAAGA+AGG 0.555115 tig0028517:-4935 None:intergenic
TTGTTCACTAGGGATGTGAT+GGG 0.561692 tig0028517:+4397 Msa1438140:intron
TCTTACGTAGAAAACTGCTT+CGG 0.565409 tig0028517:-4580 None:intergenic
GTTGGCAAAATGCAAGAAAG+TGG 0.568095 tig0028517:-3442 None:intergenic
TATAAGAGCAGCTGCAAGGG+TGG 0.568217 tig0028517:-3756 None:intergenic
AATCCAAAGCTGGATCCGCT+TGG 0.568842 tig0028517:-5170 None:intergenic
TCTTATAAGAGCAGCTGCAA+GGG 0.569116 tig0028517:-3759 None:intergenic
ACATGTTCTTGATAGTGTCC+TGG 0.570162 tig0028517:-5202 None:intergenic
ACCAAACTGCGTGATGAGCT+CGG 0.577150 tig0028517:-4951 None:intergenic
CCAGCAAATTTGAGCCTGAG+AGG 0.581219 tig0028517:+4468 Msa1438140:CDS
TTGAAAATCTAGGAAGAACA+TGG 0.583664 tig0028517:-5391 None:intergenic
CCTTTAGGTATGTTATACAC+TGG 0.588884 tig0028517:-4860 None:intergenic
ATGAAACCACGCCAGGGCAT+CGG 0.597007 tig0028517:-4530 None:intergenic
GGTTTGCTTGATATTAAACA+AGG 0.599211 tig0028517:+5432 Msa1438140:CDS
TTTACTTCAACGCTTTGTTG+AGG 0.600285 tig0028517:+5283 Msa1438140:CDS
TGAAAACCGATGCCCTGGCG+TGG 0.606785 tig0028517:+4524 Msa1438140:CDS
GATGCATTAAAAGAAGGTGA+TGG 0.610373 tig0028517:-4929 None:intergenic
ATAAGAGCAGCTGCAAGGGT+GGG 0.610728 tig0028517:-3755 None:intergenic
TATGCAGGGGCACATACACT+AGG 0.612698 tig0028517:+5111 Msa1438140:intron
TACGTAGAAAACTGCTTCGG+TGG 0.619353 tig0028517:-4577 None:intergenic
CACATACACTAGGAGTGGCA+AGG 0.657351 tig0028517:+5121 Msa1438140:CDS
TATTGAATATTGCAGGCTGG+AGG 0.657358 tig0028517:+4836 Msa1438140:intron
TATACTCTAGCCCTATAACA+AGG 0.662454 tig0028517:+5337 Msa1438140:CDS
AACAACCATTTGATGCAACT+AGG 0.664237 tig0028517:+5244 Msa1438140:CDS
TAGAACTTGTATATATAGTG+GGG 0.666273 tig0028517:-3469 None:intergenic
CAGCACATGAAACCACGCCA+GGG 0.671985 tig0028517:-4536 None:intergenic
AGGGGCACATACACTAGGAG+TGG 0.676546 tig0028517:+5116 Msa1438140:intron
CAAGAACAGATTAAGCCAAG+CGG 0.684198 tig0028517:+5155 Msa1438140:CDS
AAGCAAACCCATCTTCACCA+TGG 0.690111 tig0028517:-5418 None:intergenic
AATTCTGCTTGATTCCACCA+AGG 0.709302 tig0028517:+4422 Msa1438140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTTATAATTACAAA+CGG - tig0028517:5041-5060 None:intergenic 10.0%
!!! TTTTTGTTTATAATTACAAA+CGG - tig0028517:5041-5060 None:intergenic 10.0%
!! TTATAAAGGAATATAAAGTT+TGG - tig0028517:3514-3533 None:intergenic 15.0%
!!! AAGGGTATTTATATTTATAA+AGG - tig0028517:3528-3547 None:intergenic 15.0%
!! TAACTATATAATGTAGAAAA+TGG - tig0028517:4339-4358 None:intergenic 15.0%
!! ATATAATAAACTTGTCTTAA+TGG + tig0028517:4604-4623 Msa1438140:intron 15.0%
!! ATGATTGATTGATATAAAAT+TGG + tig0028517:4777-4796 Msa1438140:intron 15.0%
!! TGAATTATATATTATATGCA+GGG + tig0028517:5097-5116 Msa1438140:intron 15.0%
!!! AAAATGATTAGTTAATTTTG+CGG - tig0028517:5485-5504 None:intergenic 15.0%
!!! ATTAACTAATCATTTTGTTA+TGG + tig0028517:5489-5508 Msa1438140:exon 15.0%
!! TTATAAAGGAATATAAAGTT+TGG - tig0028517:3514-3533 None:intergenic 15.0%
!!! AAGGGTATTTATATTTATAA+AGG - tig0028517:3528-3547 None:intergenic 15.0%
!! TAACTATATAATGTAGAAAA+TGG - tig0028517:4339-4358 None:intergenic 15.0%
!! ATATAATAAACTTGTCTTAA+TGG + tig0028517:4604-4623 Msa1438140:intron 15.0%
!! ATGATTGATTGATATAAAAT+TGG + tig0028517:4777-4796 Msa1438140:intron 15.0%
!! TGAATTATATATTATATGCA+GGG + tig0028517:5097-5116 Msa1438140:intron 15.0%
!!! AAAATGATTAGTTAATTTTG+CGG - tig0028517:5485-5504 None:intergenic 15.0%
!!! ATTAACTAATCATTTTGTTA+TGG + tig0028517:5489-5508 Msa1438140:exon 15.0%
!! TTAGAACTTGTATATATAGT+GGG - tig0028517:3473-3492 None:intergenic 20.0%
!! ATAAAACATTAATTTCCAAG+TGG - tig0028517:3911-3930 None:intergenic 20.0%
!!! CTGATACAATCTTATAATTT+TGG + tig0028517:3972-3991 Msa1438140:intron 20.0%
!!! CAATCTTATAATTTTGGATT+AGG + tig0028517:3978-3997 Msa1438140:intron 20.0%
!!! TTTGTTTATTTTTGTTCACT+AGG + tig0028517:4386-4405 Msa1438140:intron 20.0%
!!! TTGTTTATTTTTGTTCACTA+GGG + tig0028517:4387-4406 Msa1438140:intron 20.0%
!! ATGAAACTCTACATATTTAT+AGG - tig0028517:4649-4668 None:intergenic 20.0%
!! AATGAAATATTGAATATTGC+AGG + tig0028517:4829-4848 Msa1438140:intron 20.0%
!! CTGCATATAATATATAATTC+AGG - tig0028517:5098-5117 None:intergenic 20.0%
!! CTGAATTATATATTATATGC+AGG + tig0028517:5096-5115 Msa1438140:intron 20.0%
!! GAATTATATATTATATGCAG+GGG + tig0028517:5098-5117 Msa1438140:intron 20.0%
!! TTAGAACTTGTATATATAGT+GGG - tig0028517:3473-3492 None:intergenic 20.0%
!! ATAAAACATTAATTTCCAAG+TGG - tig0028517:3911-3930 None:intergenic 20.0%
!!! CTGATACAATCTTATAATTT+TGG + tig0028517:3972-3991 Msa1438140:intron 20.0%
!!! CAATCTTATAATTTTGGATT+AGG + tig0028517:3978-3997 Msa1438140:intron 20.0%
!!! TTTGTTTATTTTTGTTCACT+AGG + tig0028517:4386-4405 Msa1438140:intron 20.0%
!!! TTGTTTATTTTTGTTCACTA+GGG + tig0028517:4387-4406 Msa1438140:intron 20.0%
!! ATGAAACTCTACATATTTAT+AGG - tig0028517:4649-4668 None:intergenic 20.0%
!! AATGAAATATTGAATATTGC+AGG + tig0028517:4829-4848 Msa1438140:intron 20.0%
!! CTGCATATAATATATAATTC+AGG - tig0028517:5098-5117 None:intergenic 20.0%
!! CTGAATTATATATTATATGC+AGG + tig0028517:5096-5115 Msa1438140:intron 20.0%
!! GAATTATATATTATATGCAG+GGG + tig0028517:5098-5117 Msa1438140:intron 20.0%
! TAGAACTTGTATATATAGTG+GGG - tig0028517:3472-3491 None:intergenic 25.0%
! CTTAGAACTTGTATATATAG+TGG - tig0028517:3474-3493 None:intergenic 25.0%
!!! TATACAAGTTCTAAGTTCTT+AGG + tig0028517:3479-3498 Msa1438140:five_prime_UTR 25.0%
! TGATTTATACATCATCTTCA+AGG - tig0028517:3555-3574 None:intergenic 25.0%
! ATCATCTAAGTCATTGAAAA+TGG + tig0028517:3571-3590 Msa1438140:CDS 25.0%
! TAAGTCATTGAAAATGGTAA+TGG + tig0028517:3577-3596 Msa1438140:CDS 25.0%
!!! GACATTTTTTATGCTAATAG+AGG + tig0028517:3610-3629 Msa1438140:CDS 25.0%
!!! CTTTACAAAACGGTTTTATT+AGG - tig0028517:4011-4030 None:intergenic 25.0%
! CTAATCTTCACTTTACAAAA+CGG - tig0028517:4021-4040 None:intergenic 25.0%
! TATAGTTAGTATGTTGTTAC+CGG - tig0028517:5014-5033 None:intergenic 25.0%
!!! AAAGTTGATGTATTATATCG+AGG + tig0028517:5071-5090 Msa1438140:intron 25.0%
!! TTGCTCTAAATTGTTTATGT+CGG + tig0028517:5625-5644 Msa1438140:three_prime_UTR 25.0%
! TAGAACTTGTATATATAGTG+GGG - tig0028517:3472-3491 None:intergenic 25.0%
! CTTAGAACTTGTATATATAG+TGG - tig0028517:3474-3493 None:intergenic 25.0%
!!! TATACAAGTTCTAAGTTCTT+AGG + tig0028517:3479-3498 Msa1438140:five_prime_UTR 25.0%
! TGATTTATACATCATCTTCA+AGG - tig0028517:3555-3574 None:intergenic 25.0%
! ATCATCTAAGTCATTGAAAA+TGG + tig0028517:3571-3590 Msa1438140:CDS 25.0%
! TAAGTCATTGAAAATGGTAA+TGG + tig0028517:3577-3596 Msa1438140:CDS 25.0%
!!! GACATTTTTTATGCTAATAG+AGG + tig0028517:3610-3629 Msa1438140:CDS 25.0%
!!! CTTTACAAAACGGTTTTATT+AGG - tig0028517:4011-4030 None:intergenic 25.0%
! CTAATCTTCACTTTACAAAA+CGG - tig0028517:4021-4040 None:intergenic 25.0%
! TATAGTTAGTATGTTGTTAC+CGG - tig0028517:5014-5033 None:intergenic 25.0%
!!! AAAGTTGATGTATTATATCG+AGG + tig0028517:5071-5090 Msa1438140:intron 25.0%
!! TTGCTCTAAATTGTTTATGT+CGG + tig0028517:5625-5644 Msa1438140:three_prime_UTR 25.0%
! TATATATAGTGGGGAATAGT+TGG - tig0028517:3463-3482 None:intergenic 30.0%
CATCATCTTCAAGGAATTAA+GGG - tig0028517:3546-3565 None:intergenic 30.0%
ACATCATCTTCAAGGAATTA+AGG - tig0028517:3547-3566 None:intergenic 30.0%
ATTACATGCCAATTTGGATT+TGG + tig0028517:3635-3654 Msa1438140:CDS 30.0%
! TAACAACTGGTTCAACAAAA+GGG - tig0028517:3703-3722 None:intergenic 30.0%
! TTAACAACTGGTTCAACAAA+AGG - tig0028517:3704-3723 None:intergenic 30.0%
! TTTTGTTGAACCAGTTGTTA+AGG + tig0028517:3703-3722 Msa1438140:CDS 30.0%
! CGTTTTGTAAAGTGAAGATT+AGG + tig0028517:4019-4038 Msa1438140:intron 30.0%
!!! GGTCTGCATTTTTTTTTTTG+TGG + tig0028517:4040-4059 Msa1438140:intron 30.0%
!!! TTTTTTTTTTGTGGTGTCCA+AGG + tig0028517:4049-4068 Msa1438140:intron 30.0%
CATACATCAACTACAACTAT+AGG + tig0028517:4285-4304 Msa1438140:intron 30.0%
ACATGTCGTTATAGTTAACA+AGG - tig0028517:4709-4728 None:intergenic 30.0%
ATGTCTAACAAAAGTCTACT+TGG + tig0028517:4725-4744 Msa1438140:intron 30.0%
AAATATTGAATATTGCAGGC+TGG + tig0028517:4833-4852 Msa1438140:intron 30.0%
TAACATACCTAAAGGTAGAA+AGG + tig0028517:4868-4887 Msa1438140:CDS 30.0%
TGGAAGAAGATCAAAAATAG+AGG + tig0028517:4892-4911 Msa1438140:CDS 30.0%
! TCACAATGTTCCTTGTTATA+GGG - tig0028517:5350-5369 None:intergenic 30.0%
! TTCACAATGTTCCTTGTTAT+AGG - tig0028517:5351-5370 None:intergenic 30.0%
TTGAAAATCTAGGAAGAACA+TGG - tig0028517:5394-5413 None:intergenic 30.0%
! GGTTTGCTTGATATTAAACA+AGG + tig0028517:5432-5451 Msa1438140:CDS 30.0%
GATATTAAACAAGGTTCCAA+TGG + tig0028517:5441-5460 Msa1438140:CDS 30.0%
! TGCTCTAAATTGTTTATGTC+GGG + tig0028517:5626-5645 Msa1438140:three_prime_UTR 30.0%
! TATATATAGTGGGGAATAGT+TGG - tig0028517:3463-3482 None:intergenic 30.0%
CATCATCTTCAAGGAATTAA+GGG - tig0028517:3546-3565 None:intergenic 30.0%
ACATCATCTTCAAGGAATTA+AGG - tig0028517:3547-3566 None:intergenic 30.0%
ATTACATGCCAATTTGGATT+TGG + tig0028517:3635-3654 Msa1438140:CDS 30.0%
! TAACAACTGGTTCAACAAAA+GGG - tig0028517:3703-3722 None:intergenic 30.0%
! TTAACAACTGGTTCAACAAA+AGG - tig0028517:3704-3723 None:intergenic 30.0%
! TTTTGTTGAACCAGTTGTTA+AGG + tig0028517:3703-3722 Msa1438140:CDS 30.0%
! CGTTTTGTAAAGTGAAGATT+AGG + tig0028517:4019-4038 Msa1438140:intron 30.0%
!!! GGTCTGCATTTTTTTTTTTG+TGG + tig0028517:4040-4059 Msa1438140:intron 30.0%
!!! TTTTTTTTTTGTGGTGTCCA+AGG + tig0028517:4049-4068 Msa1438140:intron 30.0%
CATACATCAACTACAACTAT+AGG + tig0028517:4285-4304 Msa1438140:intron 30.0%
ACATGTCGTTATAGTTAACA+AGG - tig0028517:4709-4728 None:intergenic 30.0%
ATGTCTAACAAAAGTCTACT+TGG + tig0028517:4725-4744 Msa1438140:intron 30.0%
AAATATTGAATATTGCAGGC+TGG + tig0028517:4833-4852 Msa1438140:intron 30.0%
TAACATACCTAAAGGTAGAA+AGG + tig0028517:4868-4887 Msa1438140:CDS 30.0%
TGGAAGAAGATCAAAAATAG+AGG + tig0028517:4892-4911 Msa1438140:CDS 30.0%
! TCACAATGTTCCTTGTTATA+GGG - tig0028517:5350-5369 None:intergenic 30.0%
! TTCACAATGTTCCTTGTTAT+AGG - tig0028517:5351-5370 None:intergenic 30.0%
TTGAAAATCTAGGAAGAACA+TGG - tig0028517:5394-5413 None:intergenic 30.0%
! GGTTTGCTTGATATTAAACA+AGG + tig0028517:5432-5451 Msa1438140:CDS 30.0%
GATATTAAACAAGGTTCCAA+TGG + tig0028517:5441-5460 Msa1438140:CDS 30.0%
! TGCTCTAAATTGTTTATGTC+GGG + tig0028517:5626-5645 Msa1438140:three_prime_UTR 30.0%
TGCCAATTTGGATTTGGATT+TGG + tig0028517:3641-3660 Msa1438140:CDS 35.0%
CTCCAAATCCAAATCCAAAT+TGG - tig0028517:3646-3665 None:intergenic 35.0%
CAATTTGGATTTGGATTTGG+AGG + tig0028517:3644-3663 Msa1438140:CDS 35.0%
TTCACTATGTCCTTAACAAC+TGG - tig0028517:3716-3735 None:intergenic 35.0%
CTAGAATGTAGAGAGAGAAA+GGG - tig0028517:3829-3848 None:intergenic 35.0%
AAAAATGTCCACCGTTTATG+TGG + tig0028517:4244-4263 Msa1438140:intron 35.0%
! CTTTTCTGCTGTATTATCCT+TGG - tig0028517:4442-4461 None:intergenic 35.0%
CAAGGATAATACAGCAGAAA+AGG + tig0028517:4440-4459 Msa1438140:CDS 35.0%
! ATGTGCTGATATTCTTGCTA+TGG + tig0028517:4551-4570 Msa1438140:CDS 35.0%
TCTTACGTAGAAAACTGCTT+CGG - tig0028517:4583-4602 None:intergenic 35.0%
CCTTTAGGTATGTTATACAC+TGG - tig0028517:4863-4882 None:intergenic 35.0%
CCAGTGTATAACATACCTAA+AGG + tig0028517:4860-4879 Msa1438140:CDS 35.0%
ATACCTAAAGGTAGAAAGGA+TGG + tig0028517:4872-4891 Msa1438140:CDS 35.0%
GATGCATTAAAAGAAGGTGA+TGG - tig0028517:4932-4951 None:intergenic 35.0%
CTATCAAGAACATGTACTTC+TGG + tig0028517:5210-5229 Msa1438140:CDS 35.0%
AACAACCATTTGATGCAACT+AGG + tig0028517:5244-5263 Msa1438140:CDS 35.0%
! TTTACTTCAACGCTTTGTTG+AGG + tig0028517:5283-5302 Msa1438140:CDS 35.0%
! AACGCTTTGTTGAGGAAAAA+TGG + tig0028517:5291-5310 Msa1438140:CDS 35.0%
TATACTCTAGCCCTATAACA+AGG + tig0028517:5337-5356 Msa1438140:CDS 35.0%
TCTAAATTGTTTATGTCGGG+TGG + tig0028517:5629-5648 Msa1438140:three_prime_UTR 35.0%
CTAAATTGTTTATGTCGGGT+GGG + tig0028517:5630-5649 Msa1438140:three_prime_UTR 35.0%
TAAATTGTTTATGTCGGGTG+GGG + tig0028517:5631-5650 Msa1438140:three_prime_UTR 35.0%
TGCCAATTTGGATTTGGATT+TGG + tig0028517:3641-3660 Msa1438140:CDS 35.0%
CTCCAAATCCAAATCCAAAT+TGG - tig0028517:3646-3665 None:intergenic 35.0%
CAATTTGGATTTGGATTTGG+AGG + tig0028517:3644-3663 Msa1438140:CDS 35.0%
TTCACTATGTCCTTAACAAC+TGG - tig0028517:3716-3735 None:intergenic 35.0%
CTAGAATGTAGAGAGAGAAA+GGG - tig0028517:3829-3848 None:intergenic 35.0%
AAAAATGTCCACCGTTTATG+TGG + tig0028517:4244-4263 Msa1438140:intron 35.0%
! CTTTTCTGCTGTATTATCCT+TGG - tig0028517:4442-4461 None:intergenic 35.0%
CAAGGATAATACAGCAGAAA+AGG + tig0028517:4440-4459 Msa1438140:CDS 35.0%
! ATGTGCTGATATTCTTGCTA+TGG + tig0028517:4551-4570 Msa1438140:CDS 35.0%
TCTTACGTAGAAAACTGCTT+CGG - tig0028517:4583-4602 None:intergenic 35.0%
CCTTTAGGTATGTTATACAC+TGG - tig0028517:4863-4882 None:intergenic 35.0%
CCAGTGTATAACATACCTAA+AGG + tig0028517:4860-4879 Msa1438140:CDS 35.0%
ATACCTAAAGGTAGAAAGGA+TGG + tig0028517:4872-4891 Msa1438140:CDS 35.0%
GATGCATTAAAAGAAGGTGA+TGG - tig0028517:4932-4951 None:intergenic 35.0%
CTATCAAGAACATGTACTTC+TGG + tig0028517:5210-5229 Msa1438140:CDS 35.0%
AACAACCATTTGATGCAACT+AGG + tig0028517:5244-5263 Msa1438140:CDS 35.0%
! TTTACTTCAACGCTTTGTTG+AGG + tig0028517:5283-5302 Msa1438140:CDS 35.0%
! AACGCTTTGTTGAGGAAAAA+TGG + tig0028517:5291-5310 Msa1438140:CDS 35.0%
TATACTCTAGCCCTATAACA+AGG + tig0028517:5337-5356 Msa1438140:CDS 35.0%
TCTAAATTGTTTATGTCGGG+TGG + tig0028517:5629-5648 Msa1438140:three_prime_UTR 35.0%
CTAAATTGTTTATGTCGGGT+GGG + tig0028517:5630-5649 Msa1438140:three_prime_UTR 35.0%
TAAATTGTTTATGTCGGGTG+GGG + tig0028517:5631-5650 Msa1438140:three_prime_UTR 35.0%
GTTGGCAAAATGCAAGAAAG+TGG - tig0028517:3445-3464 None:intergenic 40.0%
GAGGTGATTACATGCCAATT+TGG + tig0028517:3629-3648 Msa1438140:CDS 40.0%
TTTGGATTTGGATTTGGAGG+AGG + tig0028517:3647-3666 Msa1438140:CDS 40.0%
TTGGATTTGGATTTGGAGGA+GGG + tig0028517:3648-3667 Msa1438140:CDS 40.0%
GGACATAGTGAATAGAGCTT+TGG + tig0028517:3724-3743 Msa1438140:CDS 40.0%
TCTTATAAGAGCAGCTGCAA+GGG - tig0028517:3762-3781 None:intergenic 40.0%
TTCTTATAAGAGCAGCTGCA+AGG - tig0028517:3763-3782 None:intergenic 40.0%
CTTTCATGACTGCTTCATAC+AGG + tig0028517:3787-3806 Msa1438140:CDS 40.0%
GCTAGAATGTAGAGAGAGAA+AGG - tig0028517:3830-3849 None:intergenic 40.0%
CATAACATATGCAAAGTCCG+AGG - tig0028517:4081-4100 None:intergenic 40.0%
ATTGCACGACACCACATAAA+CGG - tig0028517:4258-4277 None:intergenic 40.0%
TTTGTTCACTAGGGATGTGA+TGG + tig0028517:4396-4415 Msa1438140:intron 40.0%
TTGTTCACTAGGGATGTGAT+GGG + tig0028517:4397-4416 Msa1438140:intron 40.0%
AATTCTGCTTGATTCCACCA+AGG + tig0028517:4422-4441 Msa1438140:CDS 40.0%
TTCTGCTGTATTATCCTTGG+TGG - tig0028517:4439-4458 None:intergenic 40.0%
TATTGAATATTGCAGGCTGG+AGG + tig0028517:4836-4855 Msa1438140:intron 40.0%
CTTCCATCCTTTCTACCTTT+AGG - tig0028517:4878-4897 None:intergenic 40.0%
AGCTCGGATGCATTAAAAGA+AGG - tig0028517:4938-4957 None:intergenic 40.0%
! TGGTTTTTCTGCACAAGAGA+TGG + tig0028517:4979-4998 Msa1438140:CDS 40.0%
CAAGAACAGATTAAGCCAAG+CGG + tig0028517:5155-5174 Msa1438140:CDS 40.0%
GCAAATTCTGAATCCAAAGC+TGG - tig0028517:5183-5202 None:intergenic 40.0%
CTTTGGATTCAGAATTTGCC+AGG + tig0028517:5184-5203 Msa1438140:CDS 40.0%
!! ACATGTTCTTGATAGTGTCC+TGG - tig0028517:5205-5224 None:intergenic 40.0%
TCGTTCCTAGTTGCATCAAA+TGG - tig0028517:5252-5271 None:intergenic 40.0%
TAGGGCTAGAGTATAGTGTT+TGG - tig0028517:5332-5351 None:intergenic 40.0%
AATCTAGGAAGAACATGGCT+TGG - tig0028517:5389-5408 None:intergenic 40.0%
!! CCATGGCTTGTTGAAAATCT+AGG - tig0028517:5404-5423 None:intergenic 40.0%
! CCTAGATTTTCAACAAGCCA+TGG + tig0028517:5401-5420 Msa1438140:CDS 40.0%
ATTTGCTCGTACTTCACCAT+TGG - tig0028517:5460-5479 None:intergenic 40.0%
GTTGGCAAAATGCAAGAAAG+TGG - tig0028517:3445-3464 None:intergenic 40.0%
GAGGTGATTACATGCCAATT+TGG + tig0028517:3629-3648 Msa1438140:CDS 40.0%
TTTGGATTTGGATTTGGAGG+AGG + tig0028517:3647-3666 Msa1438140:CDS 40.0%
TTGGATTTGGATTTGGAGGA+GGG + tig0028517:3648-3667 Msa1438140:CDS 40.0%
GGACATAGTGAATAGAGCTT+TGG + tig0028517:3724-3743 Msa1438140:CDS 40.0%
TCTTATAAGAGCAGCTGCAA+GGG - tig0028517:3762-3781 None:intergenic 40.0%
TTCTTATAAGAGCAGCTGCA+AGG - tig0028517:3763-3782 None:intergenic 40.0%
CTTTCATGACTGCTTCATAC+AGG + tig0028517:3787-3806 Msa1438140:CDS 40.0%
GCTAGAATGTAGAGAGAGAA+AGG - tig0028517:3830-3849 None:intergenic 40.0%
CATAACATATGCAAAGTCCG+AGG - tig0028517:4081-4100 None:intergenic 40.0%
ATTGCACGACACCACATAAA+CGG - tig0028517:4258-4277 None:intergenic 40.0%
TTTGTTCACTAGGGATGTGA+TGG + tig0028517:4396-4415 Msa1438140:intron 40.0%
TTGTTCACTAGGGATGTGAT+GGG + tig0028517:4397-4416 Msa1438140:intron 40.0%
AATTCTGCTTGATTCCACCA+AGG + tig0028517:4422-4441 Msa1438140:CDS 40.0%
TTCTGCTGTATTATCCTTGG+TGG - tig0028517:4439-4458 None:intergenic 40.0%
TATTGAATATTGCAGGCTGG+AGG + tig0028517:4836-4855 Msa1438140:intron 40.0%
CTTCCATCCTTTCTACCTTT+AGG - tig0028517:4878-4897 None:intergenic 40.0%
AGCTCGGATGCATTAAAAGA+AGG - tig0028517:4938-4957 None:intergenic 40.0%
! TGGTTTTTCTGCACAAGAGA+TGG + tig0028517:4979-4998 Msa1438140:CDS 40.0%
CAAGAACAGATTAAGCCAAG+CGG + tig0028517:5155-5174 Msa1438140:CDS 40.0%
GCAAATTCTGAATCCAAAGC+TGG - tig0028517:5183-5202 None:intergenic 40.0%
CTTTGGATTCAGAATTTGCC+AGG + tig0028517:5184-5203 Msa1438140:CDS 40.0%
!! ACATGTTCTTGATAGTGTCC+TGG - tig0028517:5205-5224 None:intergenic 40.0%
TCGTTCCTAGTTGCATCAAA+TGG - tig0028517:5252-5271 None:intergenic 40.0%
TAGGGCTAGAGTATAGTGTT+TGG - tig0028517:5332-5351 None:intergenic 40.0%
AATCTAGGAAGAACATGGCT+TGG - tig0028517:5389-5408 None:intergenic 40.0%
!! CCATGGCTTGTTGAAAATCT+AGG - tig0028517:5404-5423 None:intergenic 40.0%
! CCTAGATTTTCAACAAGCCA+TGG + tig0028517:5401-5420 Msa1438140:CDS 40.0%
ATTTGCTCGTACTTCACCAT+TGG - tig0028517:5460-5479 None:intergenic 40.0%
TAGAGAGAGAAAGGGAGAGA+AGG - tig0028517:3821-3840 None:intergenic 45.0%
GCATGAGACACTCAAACACA+TGG + tig0028517:3848-3867 Msa1438140:intron 45.0%
TGAGACACTCAAACACATGG+TGG + tig0028517:3851-3870 Msa1438140:intron 45.0%
ATGTTGCATGCGTACATGCA+TGG + tig0028517:3884-3903 Msa1438140:intron 45.0%
CAATGACTTCGTATCCTCTC+AGG - tig0028517:4485-4504 None:intergenic 45.0%
TACGTAGAAAACTGCTTCGG+TGG - tig0028517:4580-4599 None:intergenic 45.0%
ATCACGCAGTTTGGTCAACA+TGG + tig0028517:4959-4978 Msa1438140:CDS 45.0%
TCAACAAGCCATGGTGAAGA+TGG + tig0028517:5410-5429 Msa1438140:CDS 45.0%
CAACAAGCCATGGTGAAGAT+GGG + tig0028517:5411-5430 Msa1438140:CDS 45.0%
AAGCAAACCCATCTTCACCA+TGG - tig0028517:5421-5440 None:intergenic 45.0%
TAGAGAGAGAAAGGGAGAGA+AGG - tig0028517:3821-3840 None:intergenic 45.0%
GCATGAGACACTCAAACACA+TGG + tig0028517:3848-3867 Msa1438140:intron 45.0%
TGAGACACTCAAACACATGG+TGG + tig0028517:3851-3870 Msa1438140:intron 45.0%
ATGTTGCATGCGTACATGCA+TGG + tig0028517:3884-3903 Msa1438140:intron 45.0%
CAATGACTTCGTATCCTCTC+AGG - tig0028517:4485-4504 None:intergenic 45.0%
TACGTAGAAAACTGCTTCGG+TGG - tig0028517:4580-4599 None:intergenic 45.0%
ATCACGCAGTTTGGTCAACA+TGG + tig0028517:4959-4978 Msa1438140:CDS 45.0%
TCAACAAGCCATGGTGAAGA+TGG + tig0028517:5410-5429 Msa1438140:CDS 45.0%
CAACAAGCCATGGTGAAGAT+GGG + tig0028517:5411-5430 Msa1438140:CDS 45.0%
AAGCAAACCCATCTTCACCA+TGG - tig0028517:5421-5440 None:intergenic 45.0%
ATAAGAGCAGCTGCAAGGGT+GGG - tig0028517:3758-3777 None:intergenic 50.0%
TATAAGAGCAGCTGCAAGGG+TGG - tig0028517:3759-3778 None:intergenic 50.0%
AAAGTCCGAGGTTCGAACCT+TGG - tig0028517:4069-4088 None:intergenic 50.0%
AGCAACCACTGACGTCGTAT+TGG - tig0028517:4207-4226 None:intergenic 50.0%
CCTCTCAGGCTCAAATTTGC+TGG - tig0028517:4471-4490 None:intergenic 50.0%
CCAGCAAATTTGAGCCTGAG+AGG + tig0028517:4468-4487 Msa1438140:CDS 50.0%
ACCAAACTGCGTGATGAGCT+CGG - tig0028517:4954-4973 None:intergenic 50.0%
CAAGAGATGGTCGCTCTATC+CGG + tig0028517:4992-5011 Msa1438140:CDS 50.0%
! TATGCAGGGGCACATACACT+AGG + tig0028517:5111-5130 Msa1438140:intron 50.0%
CACATACACTAGGAGTGGCA+AGG + tig0028517:5121-5140 Msa1438140:CDS 50.0%
AATCCAAAGCTGGATCCGCT+TGG - tig0028517:5173-5192 None:intergenic 50.0%
ATAAGAGCAGCTGCAAGGGT+GGG - tig0028517:3758-3777 None:intergenic 50.0%
TATAAGAGCAGCTGCAAGGG+TGG - tig0028517:3759-3778 None:intergenic 50.0%
AAAGTCCGAGGTTCGAACCT+TGG - tig0028517:4069-4088 None:intergenic 50.0%
AGCAACCACTGACGTCGTAT+TGG - tig0028517:4207-4226 None:intergenic 50.0%
CCTCTCAGGCTCAAATTTGC+TGG - tig0028517:4471-4490 None:intergenic 50.0%
CCAGCAAATTTGAGCCTGAG+AGG + tig0028517:4468-4487 Msa1438140:CDS 50.0%
ACCAAACTGCGTGATGAGCT+CGG - tig0028517:4954-4973 None:intergenic 50.0%
CAAGAGATGGTCGCTCTATC+CGG + tig0028517:4992-5011 Msa1438140:CDS 50.0%
! TATGCAGGGGCACATACACT+AGG + tig0028517:5111-5130 Msa1438140:intron 50.0%
CACATACACTAGGAGTGGCA+AGG + tig0028517:5121-5140 Msa1438140:CDS 50.0%
AATCCAAAGCTGGATCCGCT+TGG - tig0028517:5173-5192 None:intergenic 50.0%
GCGTACATGCATGGTCCACT+TGG + tig0028517:3893-3912 Msa1438140:intron 55.0%
GGTGTCCAAGGTTCGAACCT+CGG + tig0028517:4061-4080 Msa1438140:intron 55.0%
! CCACTGACGTCGTATTGGCA+TGG - tig0028517:4202-4221 None:intergenic 55.0%
CCATGCCAATACGACGTCAG+TGG + tig0028517:4199-4218 Msa1438140:intron 55.0%
GCACGACACCACATAAACGG+TGG - tig0028517:4255-4274 None:intergenic 55.0%
GAGCTTGAAAACCGATGCCC+TGG + tig0028517:4519-4538 Msa1438140:CDS 55.0%
ATGAAACCACGCCAGGGCAT+CGG - tig0028517:4533-4552 None:intergenic 55.0%
CAGCACATGAAACCACGCCA+GGG - tig0028517:4539-4558 None:intergenic 55.0%
TCAGCACATGAAACCACGCC+AGG - tig0028517:4540-4559 None:intergenic 55.0%
TCCGAGCTCATCACGCAGTT+TGG + tig0028517:4950-4969 Msa1438140:CDS 55.0%
! AGGGGCACATACACTAGGAG+TGG + tig0028517:5116-5135 Msa1438140:intron 55.0%
AAGCCAAGCGGATCCAGCTT+TGG + tig0028517:5167-5186 Msa1438140:CDS 55.0%
GCGTACATGCATGGTCCACT+TGG + tig0028517:3893-3912 Msa1438140:intron 55.0%
GGTGTCCAAGGTTCGAACCT+CGG + tig0028517:4061-4080 Msa1438140:intron 55.0%
! CCACTGACGTCGTATTGGCA+TGG - tig0028517:4202-4221 None:intergenic 55.0%
CCATGCCAATACGACGTCAG+TGG + tig0028517:4199-4218 Msa1438140:intron 55.0%
GCACGACACCACATAAACGG+TGG - tig0028517:4255-4274 None:intergenic 55.0%
GAGCTTGAAAACCGATGCCC+TGG + tig0028517:4519-4538 Msa1438140:CDS 55.0%
ATGAAACCACGCCAGGGCAT+CGG - tig0028517:4533-4552 None:intergenic 55.0%
CAGCACATGAAACCACGCCA+GGG - tig0028517:4539-4558 None:intergenic 55.0%
TCAGCACATGAAACCACGCC+AGG - tig0028517:4540-4559 None:intergenic 55.0%
TCCGAGCTCATCACGCAGTT+TGG + tig0028517:4950-4969 Msa1438140:CDS 55.0%
! AGGGGCACATACACTAGGAG+TGG + tig0028517:5116-5135 Msa1438140:intron 55.0%
AAGCCAAGCGGATCCAGCTT+TGG + tig0028517:5167-5186 Msa1438140:CDS 55.0%
TGAAAACCGATGCCCTGGCG+TGG + tig0028517:4524-4543 Msa1438140:CDS 60.0%
TGAAAACCGATGCCCTGGCG+TGG + tig0028517:4524-4543 Msa1438140:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0028517 gene 3438 5677 3438 ID=Msa1438140;Name=Msa1438140
tig0028517 mRNA 3438 5677 3438 ID=Msa1438140-mRNA-1;Parent=Msa1438140;Name=Msa1438140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|1|1|1|1|1|4|180|326
tig0028517 exon 3438 3808 3438 ID=Msa1438140-mRNA-1:exon:11100;Parent=Msa1438140-mRNA-1
tig0028517 exon 4408 4596 4408 ID=Msa1438140-mRNA-1:exon:11101;Parent=Msa1438140-mRNA-1
tig0028517 exon 4851 5013 4851 ID=Msa1438140-mRNA-1:exon:11102;Parent=Msa1438140-mRNA-1
tig0028517 exon 5118 5677 5118 ID=Msa1438140-mRNA-1:exon:11103;Parent=Msa1438140-mRNA-1
tig0028517 five_prime_UTR 3438 3559 3438 ID=Msa1438140-mRNA-1:five_prime_utr;Parent=Msa1438140-mRNA-1
tig0028517 CDS 3560 3808 3560 ID=Msa1438140-mRNA-1:cds;Parent=Msa1438140-mRNA-1
tig0028517 CDS 4408 4596 4408 ID=Msa1438140-mRNA-1:cds;Parent=Msa1438140-mRNA-1
tig0028517 CDS 4851 5013 4851 ID=Msa1438140-mRNA-1:cds;Parent=Msa1438140-mRNA-1
tig0028517 CDS 5118 5497 5118 ID=Msa1438140-mRNA-1:cds;Parent=Msa1438140-mRNA-1
tig0028517 three_prime_UTR 5498 5677 5498 ID=Msa1438140-mRNA-1:three_prime_utr;Parent=Msa1438140-mRNA-1
Gene Sequence

>Msa1438140

ATGATGTATAAATCATCTAAGTCATTGAAAATGGTAATGGCTAAATTGATGACATTTTTTATGCTAATAGAGGTGATTACATGCCAATTTGGATTTGGATTTGGAGGAGGGTTAAACATGAACTACTATTTGATGAGTTGCCCTTTTGTTGAACCAGTTGTTAAGGACATAGTGAATAGAGCTTTGGACAATGATCCCACCCTTGCAGCTGCTCTTATAAGAATGCACTTTCATGACTGCTTCATACAGGGATGTGATGGGTCAATTCTGCTTGATTCCACCAAGGATAATACAGCAGAAAAGGATTCACCAGCAAATTTGAGCCTGAGAGGATACGAAGTCATTGATGATATCAAAGATGAGCTTGAAAACCGATGCCCTGGCGTGGTTTCATGTGCTGATATTCTTGCTATGGCTGCCACCGAAGCAGTTTTCTACGCTGGAGGTCCAGTGTATAACATACCTAAAGGTAGAAAGGATGGAAGAAGATCAAAAATAGAGGACACTAGAAATTTGCCATCACCTTCTTTTAATGCATCCGAGCTCATCACGCAGTTTGGTCAACATGGTTTTTCTGCACAAGAGATGGTCGCTCTATCCGGGGCACATACACTAGGAGTGGCAAGGTGTTCTTCATTCAAGAACAGATTAAGCCAAGCGGATCCAGCTTTGGATTCAGAATTTGCCAGGACACTATCAAGAACATGTACTTCTGGTGACAATGCAGAACAACCATTTGATGCAACTAGGAACGATTTTGACAATGTTTACTTCAACGCTTTGTTGAGGAAAAATGGTGTTTTGTTTTCAGACCAAACACTATACTCTAGCCCTATAACAAGGAACATTGTGAATGCTTATGCAATGAACCAAGCCATGTTCTTCCTAGATTTTCAACAAGCCATGGTGAAGATGGGTTTGCTTGATATTAAACAAGGTTCCAATGGTGAAGTACGAGCAAATTGCCGCAAAATTAACTAA
Protein sequence

>Msa1438140

MMYKSSKSLKMVMAKLMTFFMLIEVITCQFGFGFGGGLNMNYYLMSCPFVEPVVKDIVNRALDNDPTLAAALIRMHFHDCFIQGCDGSILLDSTKDNTAEKDSPANLSLRGYEVIDDIKDELENRCPGVVSCADILAMAATEAVFYAGGPVYNIPKGRKDGRRSKIEDTRNLPSPSFNASELITQFGQHGFSAQEMVALSGAHTLGVARCSSFKNRLSQADPALDSEFARTLSRTCTSGDNAEQPFDATRNDFDNVYFNALLRKNGVLFSDQTLYSSPITRNIVNAYAMNQAMFFLDFQQAMVKMGLLDIKQGSNGEVRANCRKIN*