AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170760 MtrunA17_Chr1g0188431 85.410 329 5 3 1 288 1 327 0.0 557
Msa0170760 MtrunA17_Chr6g0477071 54.114 316 103 3 14 288 28 342 1.85e-117 341
Msa0170760 MtrunA17_Chr5g0405991 39.077 325 139 6 14 288 1 316 5.98e-74 229
Msa0170760 MtrunA17_Chr8g0371381 39.867 301 127 5 38 288 23 319 7.00e-69 216
Msa0170760 MtrunA17_Chr1g0204011 40.604 298 125 5 41 288 27 322 8.99e-69 216
Msa0170760 MtrunA17_Chr1g0157051 38.591 298 130 6 37 284 20 314 7.50e-67 211
Msa0170760 MtrunA17_Chr3g0128061 39.535 301 129 7 41 288 26 326 1.55e-61 197
Msa0170760 MtrunA17_Chr7g0268501 35.625 320 155 7 18 288 3 320 1.75e-61 197
Msa0170760 MtrunA17_Chr7g0268521 35.625 320 155 7 18 288 3 320 1.75e-61 197
Msa0170760 MtrunA17_Chr1g0194151 36.858 331 152 9 14 288 4 333 3.54e-61 197
Msa0170760 MtrunA17_Chr4g0024121 35.873 315 150 6 26 288 12 326 1.20e-59 192
Msa0170760 MtrunA17_Chr1g0194271 35.207 338 155 9 14 288 4 340 1.20e-58 191
Msa0170760 MtrunA17_Chr3g0106901 35.873 315 148 8 20 288 17 323 2.84e-58 189
Msa0170760 MtrunA17_Chr3g0129061 34.639 332 158 9 5 288 2 322 3.94e-58 189
Msa0170760 MtrunA17_Chr3g0129051 34.356 326 155 8 11 288 8 322 6.94e-57 185
Msa0170760 MtrunA17_Chr7g0254231 36.271 295 140 6 39 288 20 311 5.57e-56 182
Msa0170760 MtrunA17_Chr7g0254201 35.374 294 143 6 41 288 20 312 1.16e-55 182
Msa0170760 MtrunA17_Chr5g0402571 36.545 301 137 7 41 288 27 326 2.38e-55 181
Msa0170760 MtrunA17_Chr2g0292091 35.099 302 142 8 41 288 24 325 1.20e-54 180
Msa0170760 MtrunA17_Chr5g0432351 37.248 298 136 8 41 288 25 321 1.27e-54 179
Msa0170760 MtrunA17_Chr7g0244461 35.463 313 152 8 22 288 4 312 1.81e-54 179
Msa0170760 MtrunA17_Chr5g0402581 35.548 301 140 7 41 288 27 326 2.39e-54 179
Msa0170760 MtrunA17_Chr2g0292101 32.738 336 162 9 7 288 1 326 3.16e-54 179
Msa0170760 MtrunA17_Chr3g0114451 37.075 294 138 7 41 288 26 318 3.92e-54 178
Msa0170760 MtrunA17_Chr5g0432441 34.615 338 159 9 1 288 1 326 4.08e-54 178
Msa0170760 MtrunA17_Chr2g0322861 34.219 301 144 8 41 288 87 386 5.70e-54 180
Msa0170760 MtrunA17_Chr1g0164891 36.755 302 135 8 43 288 91 392 5.83e-54 180
Msa0170760 MtrunA17_Chr5g0438021 36.486 296 139 7 41 288 31 325 6.30e-54 178
Msa0170760 MtrunA17_Chr5g0432341 36.242 298 139 8 41 288 25 321 9.37e-54 177
Msa0170760 MtrunA17_Chr7g0224371 35.110 319 161 7 15 288 5 322 1.07e-53 177
Msa0170760 MtrunA17_Chr7g0258811 35.644 303 140 9 41 288 69 371 3.32e-53 177
Msa0170760 MtrunA17_Chr1g0175561 36.393 305 139 9 39 288 22 326 5.56e-53 176
Msa0170760 MtrunA17_Chr4g0068621 36.424 302 141 8 38 288 35 336 5.64e-53 176
Msa0170760 MtrunA17_Chr3g0106921 34.579 321 150 8 17 288 11 320 5.96e-53 175
Msa0170760 MtrunA17_Chr3g0129041 35.473 296 142 8 41 288 28 322 1.10e-52 174
Msa0170760 MtrunA17_Chr1g0213061 34.146 328 158 12 12 288 1 321 2.80e-52 174
Msa0170760 MtrunA17_Chr4g0013721 36.455 299 137 7 41 288 100 396 1.16e-51 174
Msa0170760 MtrunA17_Chr5g0432331 35.235 298 142 8 41 288 56 352 2.21e-51 172
Msa0170760 MtrunA17_Chr6g0460711 33.129 326 159 7 10 288 1 314 5.05e-51 170
Msa0170760 MtrunA17_Chr7g0244451 34.154 325 157 8 10 288 3 316 1.55e-50 169
Msa0170760 MtrunA17_Chr2g0279041 33.660 306 146 8 37 288 23 325 1.61e-50 169
Msa0170760 MtrunA17_Chr4g0013171 33.333 297 149 8 40 288 26 321 2.48e-50 168
Msa0170760 MtrunA17_Chr2g0296621 34.122 296 143 6 41 288 50 341 2.82e-50 169
Msa0170760 MtrunA17_Chr1g0197411 33.939 330 157 10 14 288 7 330 6.77e-50 167
Msa0170760 MtrunA17_Chr4g0013181 34.130 293 144 8 44 288 62 353 8.01e-50 168
Msa0170760 MtrunA17_Chr2g0320071 32.087 321 168 8 14 288 1 317 1.05e-49 167
Msa0170760 MtrunA17_Chr4g0013821 35.117 299 141 7 41 288 28 324 1.10e-49 167
Msa0170760 MtrunA17_Chr5g0432401 36.996 273 130 8 41 287 29 285 1.36e-49 166
Msa0170760 MtrunA17_Chr1g0155611 34.983 303 143 8 40 288 45 347 6.49e-49 166
Msa0170760 MtrunA17_Chr5g0404721 34.754 305 146 9 37 288 26 330 8.49e-49 165
Msa0170760 MtrunA17_Chr2g0320091 32.877 292 148 8 44 288 28 318 1.15e-48 164
Msa0170760 MtrunA17_Chr2g0292261 31.250 336 171 8 7 288 1 330 2.44e-48 164
Msa0170760 MtrunA17_Chr5g0401431 34.106 302 144 7 41 287 27 328 3.66e-48 163
Msa0170760 MtrunA17_Chr2g0291751 32.727 330 163 9 18 288 1 330 4.27e-48 164
Msa0170760 MtrunA17_Chr6g0467121 33.220 295 147 7 40 288 73 363 5.15e-48 164
Msa0170760 MtrunA17_Chr6g0467161 32.313 294 153 6 40 288 44 336 5.98e-48 162
Msa0170760 MtrunA17_Chr4g0038151 32.416 327 163 9 11 288 4 321 8.03e-48 162
Msa0170760 MtrunA17_Chr4g0013191 34.708 291 143 7 45 288 50 340 1.57e-47 162
Msa0170760 MtrunA17_Chr2g0292271 32.450 302 150 7 41 288 29 330 2.61e-47 161
Msa0170760 MtrunA17_Chr5g0400331 35.294 306 140 9 41 288 26 331 4.08e-47 160
Msa0170760 MtrunA17_Chr4g0063671 31.949 313 155 7 31 288 11 320 4.09e-47 160
Msa0170760 MtrunA17_Chr2g0292241 31.845 336 169 10 7 288 1 330 5.07e-47 160
Msa0170760 MtrunA17_Chr7g0225221 31.722 331 166 9 7 288 1 320 7.51e-47 159
Msa0170760 MtrunA17_Chr4g0038161 32.500 320 167 6 18 288 1 320 7.67e-47 159
Msa0170760 MtrunA17_Chr8g0364291 34.448 299 142 7 44 288 26 324 8.42e-47 159
Msa0170760 MtrunA17_Chr6g0467251 33.448 290 148 4 40 284 35 324 1.22e-46 159
Msa0170760 MtrunA17_Chr2g0320101 33.677 291 146 8 44 288 28 317 1.60e-46 158
Msa0170760 MtrunA17_Chr2g0292211 31.378 341 175 10 7 288 1 341 2.42e-46 159
Msa0170760 MtrunA17_Chr8g0372601 34.211 304 147 8 38 288 27 330 3.65e-46 158
Msa0170760 MtrunA17_Chr2g0320061 33.904 292 145 9 44 288 28 318 5.13e-46 157
Msa0170760 MtrunA17_Chr2g0320051 33.025 324 162 11 14 288 1 318 8.03e-46 157
Msa0170760 MtrunA17_Chr4g0043391 32.399 321 167 7 18 288 4 324 1.50e-45 156
Msa0170760 MtrunA17_Chr2g0292151 32.047 337 167 11 7 288 1 330 1.51e-45 157
Msa0170760 MtrunA17_Chr2g0320031 31.692 325 166 11 14 288 1 319 3.25e-45 155
Msa0170760 MtrunA17_Chr4g0013201 34.007 297 143 8 41 288 46 338 5.28e-45 155
Msa0170760 MtrunA17_Chr2g0292111 31.307 329 166 11 19 288 3 330 5.69e-45 155
Msa0170760 MtrunA17_Chr5g0421411 35.842 279 122 9 67 288 7 285 7.73e-45 153
Msa0170760 MtrunA17_Chr2g0292181 30.769 325 171 9 18 288 15 339 2.37e-44 154
Msa0170760 MtrunA17_Chr4g0076211 31.864 295 150 5 42 288 42 333 2.55e-44 153
Msa0170760 MtrunA17_Chr4g0038171 34.228 298 146 7 41 288 24 321 2.80e-44 152
Msa0170760 MtrunA17_Chr4g0070951 33.231 325 155 11 20 288 11 329 2.90e-44 153
Msa0170760 MtrunA17_Chr4g0053871 32.653 294 148 7 41 284 27 320 3.13e-44 152
Msa0170760 MtrunA17_Chr2g0292251 31.169 308 158 9 35 288 22 329 4.12e-44 153
Msa0170760 MtrunA17_Chr2g0292291 30.675 326 171 7 18 288 7 332 1.59e-43 151
Msa0170760 MtrunA17_Chr2g0299691 35.216 301 136 11 45 288 60 358 3.32e-43 151
Msa0170760 MtrunA17_Chr1g0148021 30.793 328 162 9 17 288 10 328 3.38e-43 150
Msa0170760 MtrunA17_Chr3g0107881 32.441 299 150 9 41 288 27 324 9.47e-43 149
Msa0170760 MtrunA17_Chr4g0046131 32.440 336 167 11 9 284 7 342 4.64e-41 145
Msa0170760 MtrunA17_Chr6g0451571 32.673 303 147 8 41 288 34 334 1.24e-40 144
Msa0170760 MtrunA17_Chr3g0136751 29.129 333 169 9 12 288 1 322 2.51e-39 140
Msa0170760 MtrunA17_Chr4g0075241 29.721 323 175 7 18 288 5 327 5.21e-39 139
Msa0170760 MtrunA17_Chr2g0316481 29.429 333 152 9 38 287 73 405 2.32e-38 139
Msa0170760 MtrunA17_Chr4g0072091 30.363 303 153 8 41 288 24 323 2.99e-38 137
Msa0170760 MtrunA17_Chr2g0316831 30.030 333 150 10 38 287 109 441 1.46e-37 138
Msa0170760 MtrunA17_Chr2g0329641 31.683 303 149 6 41 288 36 335 1.11e-36 133
Msa0170760 MtrunA17_Chr2g0316791 28.829 333 154 10 38 287 73 405 2.05e-36 134
Msa0170760 MtrunA17_Chr4g0074851 28.912 294 160 5 40 284 31 324 6.55e-36 131
Msa0170760 MtrunA17_Chr5g0413051 30.945 307 155 9 39 288 71 377 7.83e-36 132
Msa0170760 MtrunA17_Chr2g0316191 28.743 334 154 9 38 287 73 406 2.87e-35 131
Msa0170760 MtrunA17_Chr2g0311251 28.529 333 154 10 38 287 8 339 3.47e-35 129
Msa0170760 MtrunA17_Chr2g0278671 31.457 302 151 9 41 288 24 323 4.25e-35 129
Msa0170760 MtrunA17_Chr2g0279061 32.171 258 118 8 85 288 12 266 8.49e-32 119
Msa0170760 MtrunA17_Chr1g0181431 26.936 297 168 6 41 288 27 323 1.25e-31 119
Msa0170760 MtrunA17_Chr1g0181511 27.946 297 165 6 41 288 27 323 1.84e-30 116
Msa0170760 MtrunA17_Chr1g0181481 27.273 297 167 6 41 288 27 323 1.72e-27 108
Msa0170760 MtrunA17_Chr4g0004591 26.861 309 134 10 41 287 77 355 9.57e-24 99.0
Msa0170760 MtrunA17_Chr2g0316811 35.758 165 80 4 26 164 29 193 1.72e-23 97.8
Msa0170760 MtrunA17_Chr3g0114461 34.783 184 90 6 134 288 10 192 2.26e-23 94.7
Msa0170760 MtrunA17_Chr2g0316141 27.881 269 124 9 87 287 11 277 9.64e-23 95.1
Msa0170760 MtrunA17_Chr2g0316181 27.881 269 124 9 87 287 11 277 9.64e-23 95.1
Msa0170760 MtrunA17_Chr3g0114491 47.312 93 48 1 41 132 18 110 1.35e-21 88.2
Msa0170760 MtrunA17_Chr2g0311241 42.708 96 54 1 38 133 57 151 2.12e-19 87.4
Msa0170760 MtrunA17_Chr2g0311241 24.324 222 104 7 130 287 208 429 2.07e-13 70.1
Msa0170760 MtrunA17_Chr2g0292281 30.000 190 93 6 132 288 34 216 4.22e-18 81.6
Msa0170760 MtrunA17_Chr1g0181491 32.979 94 62 1 37 130 8 100 4.12e-14 68.6
Msa0170760 MtrunA17_Chr6g0468731 54.717 53 21 1 80 132 22 71 6.78e-14 66.2
Msa0170760 MtrunA17_Chr7g0268491 40.541 74 43 1 215 288 25 97 2.78e-13 64.7
Msa0170760 MtrunA17_Chr1g0196191 50.000 54 27 0 76 129 20 73 9.95e-12 62.0
Msa0170760 MtrunA17_Chr3g0104101 38.053 113 63 4 183 288 37 149 1.07e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170760 AT4G33420.1 60.486 329 85 4 1 288 1 325 2.02e-135 386
Msa0170760 AT4G33420.2 62.069 319 76 4 11 288 58 372 9.06e-135 386
Msa0170760 AT5G51890.1 39.535 301 129 5 39 288 24 322 3.90e-69 217
Msa0170760 AT5G42180.1 38.591 298 130 5 40 287 22 316 2.34e-68 215
Msa0170760 AT4G11290.1 39.073 302 130 10 41 288 25 326 3.09e-63 202
Msa0170760 AT1G05260.1 38.538 301 131 8 41 288 26 325 3.99e-60 194
Msa0170760 AT4G36430.1 37.377 305 138 9 37 288 26 330 1.39e-59 193
Msa0170760 AT3G03670.1 35.786 299 141 5 41 288 23 321 2.80e-58 189
Msa0170760 AT4G16270.1 39.159 309 133 8 33 288 42 348 1.89e-57 188
Msa0170760 AT5G39580.1 33.231 325 161 7 14 288 1 319 3.47e-57 186
Msa0170760 AT5G17820.1 35.152 330 148 9 7 288 2 313 5.49e-57 186
Msa0170760 AT2G18140.1 34.226 336 159 12 14 288 1 335 1.03e-56 186
Msa0170760 AT5G17820.2 35.152 330 148 9 7 288 55 366 4.37e-56 185
Msa0170760 AT5G06730.1 36.615 325 147 12 20 288 13 334 1.67e-55 183
Msa0170760 AT2G18150.1 33.234 337 162 10 14 288 1 336 7.69e-55 181
Msa0170760 AT5G64120.1 33.221 298 147 6 40 288 34 328 3.86e-54 179
Msa0170760 AT1G68850.1 35.522 335 157 11 13 288 1 335 6.86e-54 178
Msa0170760 AT1G71695.1 34.007 297 148 6 40 288 43 339 9.69e-54 179
Msa0170760 AT5G06720.1 34.375 320 153 9 23 288 17 333 2.36e-53 177
Msa0170760 AT3G21770.1 34.680 297 140 8 41 284 29 324 4.28e-53 176
Msa0170760 AT5G19880.1 36.102 313 143 8 33 288 17 329 4.28e-53 176
Msa0170760 AT5G66390.1 33.832 334 165 10 8 288 3 333 6.85e-53 176
Msa0170760 AT3G01190.1 35.625 320 143 9 26 288 8 321 1.06e-52 175
Msa0170760 AT5G19890.1 35.693 339 149 12 7 288 1 327 1.64e-52 174
Msa0170760 AT1G05240.1 35.762 302 130 9 41 284 26 321 4.34e-52 173
Msa0170760 AT1G05250.1 35.762 302 130 9 41 284 26 321 4.34e-52 173
Msa0170760 AT5G05340.1 35.135 296 143 7 41 288 30 324 4.76e-52 173
Msa0170760 AT5G15180.1 34.431 334 162 9 7 288 1 329 1.25e-51 172
Msa0170760 AT4G26010.1 34.021 291 146 6 41 288 22 309 2.66e-51 171
Msa0170760 AT4G26010.2 34.021 291 146 6 41 288 50 337 3.61e-51 171
Msa0170760 AT1G44970.1 33.526 346 161 11 12 288 1 346 1.03e-50 171
Msa0170760 AT3G50990.1 32.258 341 177 8 2 288 1 341 1.51e-50 170
Msa0170760 AT1G49570.1 35.922 309 141 8 32 284 39 346 1.89e-50 170
Msa0170760 AT2G35380.1 34.441 331 152 10 18 288 10 335 5.23e-50 168
Msa0170760 AT3G28200.1 36.824 296 139 6 41 288 21 316 6.17e-50 167
Msa0170760 AT2G41480.1 35.314 303 138 9 41 288 29 328 7.30e-50 168
Msa0170760 AT1G77100.1 31.562 320 166 7 18 288 4 319 9.96e-49 164
Msa0170760 AT2G22420.1 32.722 327 159 8 13 288 3 319 3.31e-48 163
Msa0170760 AT2G24800.1 32.781 302 146 7 41 288 31 329 1.08e-47 162
Msa0170760 AT5G58390.1 36.027 297 140 7 41 288 21 316 1.38e-47 161
Msa0170760 AT4G17690.1 35.354 297 143 7 41 288 26 322 2.19e-47 161
Msa0170760 AT1G14550.1 35.135 296 144 8 41 288 26 321 3.29e-47 160
Msa0170760 AT2G38380.1 34.539 304 142 9 41 288 31 333 3.73e-47 161
Msa0170760 AT1G14540.1 34.122 296 146 9 41 288 21 315 6.04e-46 157
Msa0170760 AT1G34510.1 31.056 322 166 7 10 288 1 309 9.79e-46 156
Msa0170760 AT5G40150.1 35.065 308 145 8 33 288 24 328 1.14e-45 157
Msa0170760 AT5G58400.1 34.007 297 146 7 41 288 30 325 1.25e-45 157
Msa0170760 AT4G08770.1 34.539 304 143 8 41 288 24 327 1.79e-45 157
Msa0170760 AT4G08780.1 34.539 304 143 8 41 288 24 327 2.31e-45 156
Msa0170760 AT4G31760.1 30.565 301 153 6 41 288 29 326 2.37e-45 156
Msa0170760 AT3G49120.1 33.553 304 146 7 41 288 32 335 4.04e-44 153
Msa0170760 AT2G38390.1 33.224 304 146 9 41 288 31 333 7.91e-44 152
Msa0170760 AT2G39040.1 32.372 312 148 9 37 288 42 350 9.00e-44 152
Msa0170760 AT3G49110.1 33.224 304 147 7 41 288 33 336 1.55e-43 152
Msa0170760 AT4G33870.1 31.024 332 143 7 41 286 68 399 2.62e-43 152
Msa0170760 AT4G25980.1 31.677 322 160 10 22 288 10 326 3.10e-43 150
Msa0170760 AT5G47000.1 32.886 298 150 8 41 288 33 330 2.54e-42 148
Msa0170760 AT3G32980.1 32.787 305 147 8 41 288 31 334 8.40e-42 147
Msa0170760 AT5G64100.1 32.000 325 164 9 17 288 11 331 1.00e-41 147
Msa0170760 AT5G14130.1 31.561 301 151 8 41 288 32 330 2.68e-41 145
Msa0170760 AT5G14130.2 31.561 301 151 8 41 288 73 371 4.40e-41 146
Msa0170760 AT2G34060.1 32.781 302 146 10 41 285 42 343 4.65e-40 142
Msa0170760 AT3G49960.1 32.013 303 151 9 41 288 27 329 3.07e-39 140
Msa0170760 AT2G18980.1 30.693 303 151 8 41 288 25 323 4.70e-39 139
Msa0170760 AT4G37520.2 30.000 300 158 6 41 288 27 326 7.65e-39 139
Msa0170760 AT4G37530.1 29.703 303 158 6 41 288 27 329 9.88e-39 139
Msa0170760 AT1G30870.1 31.208 298 152 6 41 288 51 345 2.75e-38 138
Msa0170760 AT4G37520.1 29.043 303 160 7 41 288 27 329 7.15e-38 136
Msa0170760 AT5G67400.1 30.395 329 171 9 18 288 1 329 9.50e-38 136
Msa0170760 AT5G22410.1 32.515 326 159 11 15 285 3 322 1.00e-37 136
Msa0170760 AT5G64110.1 31.987 297 145 9 45 288 38 330 5.98e-37 134
Msa0170760 AT4G21960.1 29.530 298 161 4 40 288 30 327 6.35e-35 129
Msa0170760 AT5G39580.2 37.349 166 81 3 14 162 1 160 6.35e-34 124
Msa0170760 AT1G24110.1 31.561 301 153 9 41 288 22 322 8.34e-34 125
Msa0170760 AT4G30170.1 27.063 303 162 8 41 288 27 325 8.98e-34 125
Msa0170760 AT3G17070.1 29.043 303 161 6 40 288 37 339 9.20e-34 126
Msa0170760 AT5G24070.1 27.515 338 176 8 16 288 2 335 7.01e-32 121
Msa0170760 AT4G25980.2 36.538 156 77 3 24 162 57 207 8.81e-31 117
Msa0170760 AT2G43480.1 27.869 305 159 7 41 288 35 335 1.01e-29 115
Msa0170760 AT2G37130.1 26.557 305 173 6 35 288 23 327 1.88e-29 114
Msa0170760 AT2G24800.2 38.816 152 72 3 41 174 31 179 8.26e-29 110
Msa0170760 AT2G37130.2 26.014 296 169 5 43 288 1 296 3.09e-28 110
Msa0170760 AT4G37530.2 28.906 256 127 6 41 241 27 282 9.60e-27 106
Msa0170760 AT2G35380.2 32.794 247 104 9 102 288 3 247 1.06e-25 102
Msa0170760 AT3G17070.2 25.182 274 150 7 69 288 4 276 2.13e-18 83.2

Find 73 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCTTAAAGCAATTA+AGG 0.190992 1_4:-55101007 None:intergenic
CTTCCATCCTTTCTACCTTT+AGG 0.226072 1_4:-55102505 None:intergenic
TTCACAATGTTCCTTGTTCT+TGG 0.227426 1_4:-55102978 None:intergenic
TTCTATGAAGTCATTGAAAA+TGG 0.276422 1_4:+55101037 Msa0170760:CDS
TTTGGATTTGGATTTGGATT+TGG 0.288868 1_4:+55101113 Msa0170760:CDS
GCAATTAAGGGTATTTATAA+AGG 0.291314 1_4:-55100994 None:intergenic
TGCCAATTTGGATTTGGATT+TGG 0.293291 1_4:+55101107 Msa0170760:CDS
ATTACATGCCAATTTGGATT+TGG 0.293555 1_4:+55101101 Msa0170760:CDS
TATACACGTTCTAAGTTCTT+AGG 0.300108 1_4:+55100948 Msa0170760:five_prime_UTR
ATCCAAATCCAAATCCAAAT+TGG 0.319427 1_4:-55101109 None:intergenic
CCATGGCTTGTTGAAAATCT+AGG 0.323135 1_4:-55103031 None:intergenic
TTCTGCTGTATTATCCTTAG+TGG 0.329301 1_4:-55102066 None:intergenic
TCACAATGTTCCTTGTTCTT+GGG 0.350332 1_4:-55102977 None:intergenic
GAGGTGATTACATGCCAATT+TGG 0.350555 1_4:+55101095 Msa0170760:CDS
TTATAAAGGAATATAGAGTT+TGG 0.361060 1_4:-55100980 None:intergenic
CCTCTTAGACTCAAATTTGC+TGG 0.371420 1_4:-55102098 None:intergenic
CTATCAAGAACATGTACTTC+TGG 0.371534 1_4:+55102840 Msa0170760:CDS
TTCACTATGTCCTTAACAAC+TGG 0.383944 1_4:-55101185 None:intergenic
GGATTTGGATTTGGATTTGG+AGG 0.385693 1_4:+55101116 Msa0170760:CDS
TTAACAACTGGTTCAACAAA+AGG 0.406122 1_4:-55101173 None:intergenic
AAGCCAAGTGGATCCAGCTT+TGG 0.413980 1_4:+55102797 Msa0170760:CDS
CATCATCTTAAAGCAATTAA+GGG 0.419174 1_4:-55101006 None:intergenic
TCAACAAGCCATGGTGAAGA+TGG 0.422355 1_4:+55103040 Msa0170760:CDS
CCAGCAAATTTGAGTCTAAG+AGG 0.430332 1_4:+55102098 Msa0170760:CDS
TTGGATTTGGATTTGGAGGA+GGG 0.437592 1_4:+55101120 Msa0170760:CDS
TTTGTCCCCTAGGGATGTGA+TGG 0.437836 1_4:+55102026 Msa0170760:intron
GGACATAGTGAATAGAGCTT+TGG 0.440304 1_4:+55101196 Msa0170760:CDS
TAAGGATAATACAGCAGAAA+AGG 0.444182 1_4:+55102070 Msa0170760:CDS
TTTGGATTTGGATTTGGAGG+AGG 0.448939 1_4:+55101119 Msa0170760:CDS
CTTAGAACGTGTATATATAG+TGG 0.449283 1_4:-55100940 None:intergenic
TATATATAGTGGGGAATAGT+TGG 0.450076 1_4:-55100929 None:intergenic
CTTTGGATTCAGAATTTGCC+AGG 0.451170 1_4:+55102814 Msa0170760:CDS
CTTCCATGACTGCTTCATAC+AGG 0.455801 1_4:+55101259 Msa0170760:CDS
ATTTGCTCGTACTTCACCAT+TGG 0.458895 1_4:-55103087 None:intergenic
TCGTTCCTAGTTGCATCAAA+TGG 0.467823 1_4:-55102879 None:intergenic
CAACAAGCCATGGTGAAGAT+GGG 0.482582 1_4:+55103041 Msa0170760:CDS
GAAGTCATTGAAAATGGTAA+TGG 0.491999 1_4:+55101043 Msa0170760:CDS
TAACATACCTAAAGGTAGAA+AGG 0.492130 1_4:+55102498 Msa0170760:CDS
GCAAATTCTGAATCCAAAGC+TGG 0.507065 1_4:-55102810 None:intergenic
TTAGAACGTGTATATATAGT+GGG 0.515823 1_4:-55100939 None:intergenic
AATTCTGCTTGATTCCACTA+AGG 0.524922 1_4:+55102052 Msa0170760:CDS
TAACAACTGGTTCAACAAAA+GGG 0.527365 1_4:-55101172 None:intergenic
TCAGCACATGAAACCACGCC+AGG 0.530493 1_4:-55102167 None:intergenic
GAGCTTGAAAACCGATGCCC+TGG 0.541064 1_4:+55102149 Msa0170760:CDS
CCAGTGTATAACATACCTAA+AGG 0.544678 1_4:+55102490 Msa0170760:CDS
TTCTTATAAGAGCAGCTGCA+AGG 0.544991 1_4:-55101232 None:intergenic
AATCTAGGAAGAACATGGCT+TGG 0.545440 1_4:-55103016 None:intergenic
GATATTAAACAAGGTTCCAA+TGG 0.546015 1_4:+55103071 Msa0170760:CDS
ATACCTAAAGGTAGAAAGGA+TGG 0.552044 1_4:+55102502 Msa0170760:CDS
AGCTCGGATGCATTAAAAGA+AGG 0.555115 1_4:-55102565 None:intergenic
TTTATTTCAACGCTTTGTTG+AGG 0.556199 1_4:+55102913 Msa0170760:CDS
TTGTCCCCTAGGGATGTGAT+GGG 0.557386 1_4:+55102027 Msa0170760:intron
GTTGGCAAAATGCAAGAAAG+TGG 0.568095 1_4:-55100911 None:intergenic
TATAAGAGCAGCTGCAAGGG+TGG 0.568217 1_4:-55101228 None:intergenic
GAACCTGTATGAAGCAGTCA+TGG 0.568430 1_4:-55101262 None:intergenic
TCTTATAAGAGCAGCTGCAA+GGG 0.569116 1_4:-55101231 None:intergenic
ACATGTTCTTGATAGTGTCC+TGG 0.570162 1_4:-55102832 None:intergenic
AATCCAAAGCTGGATCCACT+TGG 0.576508 1_4:-55102800 None:intergenic
ACCAAACTGCGTGATGAGCT+CGG 0.577150 1_4:-55102581 None:intergenic
TTGAAAATCTAGGAAGAACA+TGG 0.583664 1_4:-55103021 None:intergenic
CCTTTAGGTATGTTATACAC+TGG 0.588884 1_4:-55102490 None:intergenic
ATGAAACCACGCCAGGGCAT+CGG 0.597007 1_4:-55102160 None:intergenic
GGTTTGCTTGATATTAAACA+AGG 0.599211 1_4:+55103062 Msa0170760:CDS
TGAAAACCGATGCCCTGGCG+TGG 0.606785 1_4:+55102154 Msa0170760:CDS
GATGCATTAAAAGAAGGTGA+TGG 0.610373 1_4:-55102559 None:intergenic
CAAGAACAGATTAAGCCAAG+TGG 0.610606 1_4:+55102785 Msa0170760:CDS
ATAAGAGCAGCTGCAAGGGT+GGG 0.610728 1_4:-55101227 None:intergenic
TCTACTCTAGCCCAAGAACA+AGG 0.644908 1_4:+55102967 Msa0170760:CDS
TATTGAATATTGCAGGCTGG+AGG 0.657358 1_4:+55102466 Msa0170760:intron
AACAACCATTTGATGCAACT+AGG 0.664237 1_4:+55102874 Msa0170760:CDS
CAGCACATGAAACCACGCCA+GGG 0.671985 1_4:-55102166 None:intergenic
AAGCAAACCCATCTTCACCA+TGG 0.690111 1_4:-55103048 None:intergenic
TAGAACGTGTATATATAGTG+GGG 0.715955 1_4:-55100938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAACATTAATTTTTAAG+TGG - chr1_4:55101387-55101406 None:intergenic 10.0%
!! ACTTAAAAATTAATGTTTAA+TGG + chr1_4:55101386-55101405 Msa0170760:intron 10.0%
!! CTTAAAAATTAATGTTTAAT+GGG + chr1_4:55101387-55101406 Msa0170760:intron 10.0%
!!! TTTTTGTTTATAATTACAAA+CGG - chr1_4:55102671-55102690 None:intergenic 10.0%
!!! ATTAAACATTAATTTTTAAG+TGG - chr1_4:55101387-55101406 None:intergenic 10.0%
!! ACTTAAAAATTAATGTTTAA+TGG + chr1_4:55101386-55101405 Msa0170760:intron 10.0%
!! CTTAAAAATTAATGTTTAAT+GGG + chr1_4:55101387-55101406 Msa0170760:intron 10.0%
!!! TTTTTGTTTATAATTACAAA+CGG - chr1_4:55102671-55102690 None:intergenic 10.0%
!!! TTACATTAAATTACTTGTTT+TGG + chr1_4:55101507-55101526 Msa0170760:intron 15.0%
!! TAACTATATAATGTAGAAAA+TGG - chr1_4:55101970-55101989 None:intergenic 15.0%
!! ATATAATAAACTTGTCTTAA+TGG + chr1_4:55102234-55102253 Msa0170760:intron 15.0%
!! ATGATTGATTGATATAAAAT+TGG + chr1_4:55102407-55102426 Msa0170760:intron 15.0%
!!! TTACATTAAATTACTTGTTT+TGG + chr1_4:55101507-55101526 Msa0170760:intron 15.0%
!! TAACTATATAATGTAGAAAA+TGG - chr1_4:55101970-55101989 None:intergenic 15.0%
!! ATATAATAAACTTGTCTTAA+TGG + chr1_4:55102234-55102253 Msa0170760:intron 15.0%
!! ATGATTGATTGATATAAAAT+TGG + chr1_4:55102407-55102426 Msa0170760:intron 15.0%
!! TTATAAAGGAATATAGAGTT+TGG - chr1_4:55100983-55101002 None:intergenic 20.0%
!! TAAACTCATACTATAAAACA+TGG - chr1_4:55101572-55101591 None:intergenic 20.0%
!! ATGAAACTCTACATATTTAT+AGG - chr1_4:55102279-55102298 None:intergenic 20.0%
!! AATGAAATATTGAATATTGC+AGG + chr1_4:55102459-55102478 Msa0170760:intron 20.0%
!! TGAATTATAGATTATATGCA+GGG + chr1_4:55102727-55102746 Msa0170760:intron 20.0%
!! TTATAAAGGAATATAGAGTT+TGG - chr1_4:55100983-55101002 None:intergenic 20.0%
!! TAAACTCATACTATAAAACA+TGG - chr1_4:55101572-55101591 None:intergenic 20.0%
!! ATGAAACTCTACATATTTAT+AGG - chr1_4:55102279-55102298 None:intergenic 20.0%
!! AATGAAATATTGAATATTGC+AGG + chr1_4:55102459-55102478 Msa0170760:intron 20.0%
!! TGAATTATAGATTATATGCA+GGG + chr1_4:55102727-55102746 Msa0170760:intron 20.0%
! TTAGAACGTGTATATATAGT+GGG - chr1_4:55100942-55100961 None:intergenic 25.0%
!!! GCAATTAAGGGTATTTATAA+AGG - chr1_4:55100997-55101016 None:intergenic 25.0%
! CATCATCTTAAAGCAATTAA+GGG - chr1_4:55101009-55101028 None:intergenic 25.0%
! ACATCATCTTAAAGCAATTA+AGG - chr1_4:55101010-55101029 None:intergenic 25.0%
! TTCTATGAAGTCATTGAAAA+TGG + chr1_4:55101037-55101056 Msa0170760:CDS 25.0%
!!! GACATTTTTTATGCTAATAG+AGG + chr1_4:55101076-55101095 Msa0170760:CDS 25.0%
!! CTCATACCATCTTATAATTT+TGG + chr1_4:55101635-55101654 Msa0170760:intron 25.0%
! CCTAATCCAAAATTATAAGA+TGG - chr1_4:55101644-55101663 None:intergenic 25.0%
!! CCATCTTATAATTTTGGATT+AGG + chr1_4:55101641-55101660 Msa0170760:intron 25.0%
! CTAATCTTCACTTTACAAAA+CGG - chr1_4:55101687-55101706 None:intergenic 25.0%
! TATAGTTAGTATGTTGTTAC+CGG - chr1_4:55102644-55102663 None:intergenic 25.0%
!!! AAAGTTGATGTATTATATCG+AGG + chr1_4:55102701-55102720 Msa0170760:intron 25.0%
! CTGCATATAATCTATAATTC+AGG - chr1_4:55102728-55102747 None:intergenic 25.0%
! CTGAATTATAGATTATATGC+AGG + chr1_4:55102726-55102745 Msa0170760:intron 25.0%
! GAATTATAGATTATATGCAG+GGG + chr1_4:55102728-55102747 Msa0170760:intron 25.0%
! TTAGAACGTGTATATATAGT+GGG - chr1_4:55100942-55100961 None:intergenic 25.0%
!!! GCAATTAAGGGTATTTATAA+AGG - chr1_4:55100997-55101016 None:intergenic 25.0%
! CATCATCTTAAAGCAATTAA+GGG - chr1_4:55101009-55101028 None:intergenic 25.0%
! ACATCATCTTAAAGCAATTA+AGG - chr1_4:55101010-55101029 None:intergenic 25.0%
! TTCTATGAAGTCATTGAAAA+TGG + chr1_4:55101037-55101056 Msa0170760:CDS 25.0%
!!! GACATTTTTTATGCTAATAG+AGG + chr1_4:55101076-55101095 Msa0170760:CDS 25.0%
!! CTCATACCATCTTATAATTT+TGG + chr1_4:55101635-55101654 Msa0170760:intron 25.0%
! CCTAATCCAAAATTATAAGA+TGG - chr1_4:55101644-55101663 None:intergenic 25.0%
!! CCATCTTATAATTTTGGATT+AGG + chr1_4:55101641-55101660 Msa0170760:intron 25.0%
! CTAATCTTCACTTTACAAAA+CGG - chr1_4:55101687-55101706 None:intergenic 25.0%
! TATAGTTAGTATGTTGTTAC+CGG - chr1_4:55102644-55102663 None:intergenic 25.0%
!!! AAAGTTGATGTATTATATCG+AGG + chr1_4:55102701-55102720 Msa0170760:intron 25.0%
! CTGCATATAATCTATAATTC+AGG - chr1_4:55102728-55102747 None:intergenic 25.0%
! CTGAATTATAGATTATATGC+AGG + chr1_4:55102726-55102745 Msa0170760:intron 25.0%
! GAATTATAGATTATATGCAG+GGG + chr1_4:55102728-55102747 Msa0170760:intron 25.0%
! TATATATAGTGGGGAATAGT+TGG - chr1_4:55100932-55100951 None:intergenic 30.0%
TAGAACGTGTATATATAGTG+GGG - chr1_4:55100941-55100960 None:intergenic 30.0%
CTTAGAACGTGTATATATAG+TGG - chr1_4:55100943-55100962 None:intergenic 30.0%
! TATACACGTTCTAAGTTCTT+AGG + chr1_4:55100948-55100967 Msa0170760:five_prime_UTR 30.0%
GAAGTCATTGAAAATGGTAA+TGG + chr1_4:55101043-55101062 Msa0170760:CDS 30.0%
ATTACATGCCAATTTGGATT+TGG + chr1_4:55101101-55101120 Msa0170760:CDS 30.0%
ATCCAAATCCAAATCCAAAT+TGG - chr1_4:55101112-55101131 None:intergenic 30.0%
TTTGGATTTGGATTTGGATT+TGG + chr1_4:55101113-55101132 Msa0170760:CDS 30.0%
! TAACAACTGGTTCAACAAAA+GGG - chr1_4:55101175-55101194 None:intergenic 30.0%
! TTAACAACTGGTTCAACAAA+AGG - chr1_4:55101176-55101195 None:intergenic 30.0%
! TTTTGTTGAACCAGTTGTTA+AGG + chr1_4:55101175-55101194 Msa0170760:CDS 30.0%
AATGATAAACAGTGCATTCA+GGG - chr1_4:55101547-55101566 None:intergenic 30.0%
! CGTTTTGTAAAGTGAAGATT+AGG + chr1_4:55101685-55101704 Msa0170760:intron 30.0%
CATCAATCAACTACAACTAT+AGG + chr1_4:55101916-55101935 Msa0170760:intron 30.0%
!!! ATTTGTTTATTTTGTCCCCT+AGG + chr1_4:55102016-55102035 Msa0170760:intron 30.0%
!!! TTTGTTTATTTTGTCCCCTA+GGG + chr1_4:55102017-55102036 Msa0170760:intron 30.0%
TAAGGATAATACAGCAGAAA+AGG + chr1_4:55102070-55102089 Msa0170760:CDS 30.0%
ACATGTCGTTATAGTTAACA+AGG - chr1_4:55102339-55102358 None:intergenic 30.0%
ATGTCTAACAAAAGTCTACT+TGG + chr1_4:55102355-55102374 Msa0170760:intron 30.0%
AAATATTGAATATTGCAGGC+TGG + chr1_4:55102463-55102482 Msa0170760:intron 30.0%
TAACATACCTAAAGGTAGAA+AGG + chr1_4:55102498-55102517 Msa0170760:CDS 30.0%
TGGAAGAAGATCAAAAATAG+AGG + chr1_4:55102522-55102541 Msa0170760:CDS 30.0%
! TTTATTTCAACGCTTTGTTG+AGG + chr1_4:55102913-55102932 Msa0170760:CDS 30.0%
TTGAAAATCTAGGAAGAACA+TGG - chr1_4:55103024-55103043 None:intergenic 30.0%
! GGTTTGCTTGATATTAAACA+AGG + chr1_4:55103062-55103081 Msa0170760:CDS 30.0%
GATATTAAACAAGGTTCCAA+TGG + chr1_4:55103071-55103090 Msa0170760:CDS 30.0%
! TATATATAGTGGGGAATAGT+TGG - chr1_4:55100932-55100951 None:intergenic 30.0%
TAGAACGTGTATATATAGTG+GGG - chr1_4:55100941-55100960 None:intergenic 30.0%
CTTAGAACGTGTATATATAG+TGG - chr1_4:55100943-55100962 None:intergenic 30.0%
! TATACACGTTCTAAGTTCTT+AGG + chr1_4:55100948-55100967 Msa0170760:five_prime_UTR 30.0%
GAAGTCATTGAAAATGGTAA+TGG + chr1_4:55101043-55101062 Msa0170760:CDS 30.0%
ATTACATGCCAATTTGGATT+TGG + chr1_4:55101101-55101120 Msa0170760:CDS 30.0%
ATCCAAATCCAAATCCAAAT+TGG - chr1_4:55101112-55101131 None:intergenic 30.0%
TTTGGATTTGGATTTGGATT+TGG + chr1_4:55101113-55101132 Msa0170760:CDS 30.0%
! TAACAACTGGTTCAACAAAA+GGG - chr1_4:55101175-55101194 None:intergenic 30.0%
! TTAACAACTGGTTCAACAAA+AGG - chr1_4:55101176-55101195 None:intergenic 30.0%
! TTTTGTTGAACCAGTTGTTA+AGG + chr1_4:55101175-55101194 Msa0170760:CDS 30.0%
AATGATAAACAGTGCATTCA+GGG - chr1_4:55101547-55101566 None:intergenic 30.0%
! CGTTTTGTAAAGTGAAGATT+AGG + chr1_4:55101685-55101704 Msa0170760:intron 30.0%
CATCAATCAACTACAACTAT+AGG + chr1_4:55101916-55101935 Msa0170760:intron 30.0%
!!! ATTTGTTTATTTTGTCCCCT+AGG + chr1_4:55102016-55102035 Msa0170760:intron 30.0%
!!! TTTGTTTATTTTGTCCCCTA+GGG + chr1_4:55102017-55102036 Msa0170760:intron 30.0%
TAAGGATAATACAGCAGAAA+AGG + chr1_4:55102070-55102089 Msa0170760:CDS 30.0%
ACATGTCGTTATAGTTAACA+AGG - chr1_4:55102339-55102358 None:intergenic 30.0%
ATGTCTAACAAAAGTCTACT+TGG + chr1_4:55102355-55102374 Msa0170760:intron 30.0%
AAATATTGAATATTGCAGGC+TGG + chr1_4:55102463-55102482 Msa0170760:intron 30.0%
TAACATACCTAAAGGTAGAA+AGG + chr1_4:55102498-55102517 Msa0170760:CDS 30.0%
TGGAAGAAGATCAAAAATAG+AGG + chr1_4:55102522-55102541 Msa0170760:CDS 30.0%
! TTTATTTCAACGCTTTGTTG+AGG + chr1_4:55102913-55102932 Msa0170760:CDS 30.0%
TTGAAAATCTAGGAAGAACA+TGG - chr1_4:55103024-55103043 None:intergenic 30.0%
! GGTTTGCTTGATATTAAACA+AGG + chr1_4:55103062-55103081 Msa0170760:CDS 30.0%
GATATTAAACAAGGTTCCAA+TGG + chr1_4:55103071-55103090 Msa0170760:CDS 30.0%
TGCCAATTTGGATTTGGATT+TGG + chr1_4:55101107-55101126 Msa0170760:CDS 35.0%
TTCACTATGTCCTTAACAAC+TGG - chr1_4:55101188-55101207 None:intergenic 35.0%
TTCCTTAATCATTGCTCTGA+GGG - chr1_4:55101428-55101447 None:intergenic 35.0%
TTTCCTTAATCATTGCTCTG+AGG - chr1_4:55101429-55101448 None:intergenic 35.0%
GAATGATAAACAGTGCATTC+AGG - chr1_4:55101548-55101567 None:intergenic 35.0%
TATTGCACGACACACATATA+CGG - chr1_4:55101890-55101909 None:intergenic 35.0%
AATTCTGCTTGATTCCACTA+AGG + chr1_4:55102052-55102071 Msa0170760:CDS 35.0%
TTCTGCTGTATTATCCTTAG+TGG - chr1_4:55102069-55102088 None:intergenic 35.0%
! ATGTGCTGATATTCTTGCTA+TGG + chr1_4:55102181-55102200 Msa0170760:intron 35.0%
TCTTACGTAGAAAACTGCTT+CGG - chr1_4:55102213-55102232 None:intergenic 35.0%
CCTTTAGGTATGTTATACAC+TGG - chr1_4:55102493-55102512 None:intergenic 35.0%
CCAGTGTATAACATACCTAA+AGG + chr1_4:55102490-55102509 Msa0170760:CDS 35.0%
ATACCTAAAGGTAGAAAGGA+TGG + chr1_4:55102502-55102521 Msa0170760:CDS 35.0%
GATGCATTAAAAGAAGGTGA+TGG - chr1_4:55102562-55102581 None:intergenic 35.0%
CTATCAAGAACATGTACTTC+TGG + chr1_4:55102840-55102859 Msa0170760:CDS 35.0%
AACAACCATTTGATGCAACT+AGG + chr1_4:55102874-55102893 Msa0170760:CDS 35.0%
! AACGCTTTGTTGAGGAAAAA+TGG + chr1_4:55102921-55102940 Msa0170760:CDS 35.0%
TCACAATGTTCCTTGTTCTT+GGG - chr1_4:55102980-55102999 None:intergenic 35.0%
TTCACAATGTTCCTTGTTCT+TGG - chr1_4:55102981-55103000 None:intergenic 35.0%
TGCCAATTTGGATTTGGATT+TGG + chr1_4:55101107-55101126 Msa0170760:CDS 35.0%
TTCACTATGTCCTTAACAAC+TGG - chr1_4:55101188-55101207 None:intergenic 35.0%
TTCCTTAATCATTGCTCTGA+GGG - chr1_4:55101428-55101447 None:intergenic 35.0%
TTTCCTTAATCATTGCTCTG+AGG - chr1_4:55101429-55101448 None:intergenic 35.0%
GAATGATAAACAGTGCATTC+AGG - chr1_4:55101548-55101567 None:intergenic 35.0%
TATTGCACGACACACATATA+CGG - chr1_4:55101890-55101909 None:intergenic 35.0%
AATTCTGCTTGATTCCACTA+AGG + chr1_4:55102052-55102071 Msa0170760:CDS 35.0%
TTCTGCTGTATTATCCTTAG+TGG - chr1_4:55102069-55102088 None:intergenic 35.0%
! ATGTGCTGATATTCTTGCTA+TGG + chr1_4:55102181-55102200 Msa0170760:intron 35.0%
TCTTACGTAGAAAACTGCTT+CGG - chr1_4:55102213-55102232 None:intergenic 35.0%
CCTTTAGGTATGTTATACAC+TGG - chr1_4:55102493-55102512 None:intergenic 35.0%
CCAGTGTATAACATACCTAA+AGG + chr1_4:55102490-55102509 Msa0170760:CDS 35.0%
ATACCTAAAGGTAGAAAGGA+TGG + chr1_4:55102502-55102521 Msa0170760:CDS 35.0%
GATGCATTAAAAGAAGGTGA+TGG - chr1_4:55102562-55102581 None:intergenic 35.0%
CTATCAAGAACATGTACTTC+TGG + chr1_4:55102840-55102859 Msa0170760:CDS 35.0%
AACAACCATTTGATGCAACT+AGG + chr1_4:55102874-55102893 Msa0170760:CDS 35.0%
! AACGCTTTGTTGAGGAAAAA+TGG + chr1_4:55102921-55102940 Msa0170760:CDS 35.0%
TCACAATGTTCCTTGTTCTT+GGG - chr1_4:55102980-55102999 None:intergenic 35.0%
TTCACAATGTTCCTTGTTCT+TGG - chr1_4:55102981-55103000 None:intergenic 35.0%
GTTGGCAAAATGCAAGAAAG+TGG - chr1_4:55100914-55100933 None:intergenic 40.0%
GAGGTGATTACATGCCAATT+TGG + chr1_4:55101095-55101114 Msa0170760:CDS 40.0%
GGATTTGGATTTGGATTTGG+AGG + chr1_4:55101116-55101135 Msa0170760:CDS 40.0%
TTTGGATTTGGATTTGGAGG+AGG + chr1_4:55101119-55101138 Msa0170760:CDS 40.0%
TTGGATTTGGATTTGGAGGA+GGG + chr1_4:55101120-55101139 Msa0170760:CDS 40.0%
GGACATAGTGAATAGAGCTT+TGG + chr1_4:55101196-55101215 Msa0170760:CDS 40.0%
TCTTATAAGAGCAGCTGCAA+GGG - chr1_4:55101234-55101253 None:intergenic 40.0%
TTCTTATAAGAGCAGCTGCA+AGG - chr1_4:55101235-55101254 None:intergenic 40.0%
AATGTAGAGAGAGAGAGAGA+GGG - chr1_4:55101301-55101320 None:intergenic 40.0%
ATGTTGCATGCATACATGCA+TGG + chr1_4:55101360-55101379 Msa0170760:intron 40.0%
CCTCTTAGACTCAAATTTGC+TGG - chr1_4:55102101-55102120 None:intergenic 40.0%
CCAGCAAATTTGAGTCTAAG+AGG + chr1_4:55102098-55102117 Msa0170760:CDS 40.0%
TATTGAATATTGCAGGCTGG+AGG + chr1_4:55102466-55102485 Msa0170760:intron 40.0%
CTTCCATCCTTTCTACCTTT+AGG - chr1_4:55102508-55102527 None:intergenic 40.0%
AGCTCGGATGCATTAAAAGA+AGG - chr1_4:55102568-55102587 None:intergenic 40.0%
! TGGTTTTTCTGCACAAGAGA+TGG + chr1_4:55102609-55102628 Msa0170760:intron 40.0%
CAAGAACAGATTAAGCCAAG+TGG + chr1_4:55102785-55102804 Msa0170760:CDS 40.0%
GCAAATTCTGAATCCAAAGC+TGG - chr1_4:55102813-55102832 None:intergenic 40.0%
CTTTGGATTCAGAATTTGCC+AGG + chr1_4:55102814-55102833 Msa0170760:CDS 40.0%
!! ACATGTTCTTGATAGTGTCC+TGG - chr1_4:55102835-55102854 None:intergenic 40.0%
TCGTTCCTAGTTGCATCAAA+TGG - chr1_4:55102882-55102901 None:intergenic 40.0%
AATCTAGGAAGAACATGGCT+TGG - chr1_4:55103019-55103038 None:intergenic 40.0%
!! CCATGGCTTGTTGAAAATCT+AGG - chr1_4:55103034-55103053 None:intergenic 40.0%
! CCTAGATTTTCAACAAGCCA+TGG + chr1_4:55103031-55103050 Msa0170760:CDS 40.0%
ATTTGCTCGTACTTCACCAT+TGG - chr1_4:55103090-55103109 None:intergenic 40.0%
GTTGGCAAAATGCAAGAAAG+TGG - chr1_4:55100914-55100933 None:intergenic 40.0%
GAGGTGATTACATGCCAATT+TGG + chr1_4:55101095-55101114 Msa0170760:CDS 40.0%
GGATTTGGATTTGGATTTGG+AGG + chr1_4:55101116-55101135 Msa0170760:CDS 40.0%
TTTGGATTTGGATTTGGAGG+AGG + chr1_4:55101119-55101138 Msa0170760:CDS 40.0%
TTGGATTTGGATTTGGAGGA+GGG + chr1_4:55101120-55101139 Msa0170760:CDS 40.0%
GGACATAGTGAATAGAGCTT+TGG + chr1_4:55101196-55101215 Msa0170760:CDS 40.0%
TCTTATAAGAGCAGCTGCAA+GGG - chr1_4:55101234-55101253 None:intergenic 40.0%
TTCTTATAAGAGCAGCTGCA+AGG - chr1_4:55101235-55101254 None:intergenic 40.0%
AATGTAGAGAGAGAGAGAGA+GGG - chr1_4:55101301-55101320 None:intergenic 40.0%
ATGTTGCATGCATACATGCA+TGG + chr1_4:55101360-55101379 Msa0170760:intron 40.0%
CCTCTTAGACTCAAATTTGC+TGG - chr1_4:55102101-55102120 None:intergenic 40.0%
CCAGCAAATTTGAGTCTAAG+AGG + chr1_4:55102098-55102117 Msa0170760:CDS 40.0%
TATTGAATATTGCAGGCTGG+AGG + chr1_4:55102466-55102485 Msa0170760:intron 40.0%
CTTCCATCCTTTCTACCTTT+AGG - chr1_4:55102508-55102527 None:intergenic 40.0%
AGCTCGGATGCATTAAAAGA+AGG - chr1_4:55102568-55102587 None:intergenic 40.0%
! TGGTTTTTCTGCACAAGAGA+TGG + chr1_4:55102609-55102628 Msa0170760:intron 40.0%
CAAGAACAGATTAAGCCAAG+TGG + chr1_4:55102785-55102804 Msa0170760:CDS 40.0%
GCAAATTCTGAATCCAAAGC+TGG - chr1_4:55102813-55102832 None:intergenic 40.0%
CTTTGGATTCAGAATTTGCC+AGG + chr1_4:55102814-55102833 Msa0170760:CDS 40.0%
!! ACATGTTCTTGATAGTGTCC+TGG - chr1_4:55102835-55102854 None:intergenic 40.0%
TCGTTCCTAGTTGCATCAAA+TGG - chr1_4:55102882-55102901 None:intergenic 40.0%
AATCTAGGAAGAACATGGCT+TGG - chr1_4:55103019-55103038 None:intergenic 40.0%
!! CCATGGCTTGTTGAAAATCT+AGG - chr1_4:55103034-55103053 None:intergenic 40.0%
! CCTAGATTTTCAACAAGCCA+TGG + chr1_4:55103031-55103050 Msa0170760:CDS 40.0%
ATTTGCTCGTACTTCACCAT+TGG - chr1_4:55103090-55103109 None:intergenic 40.0%
CTTCCATGACTGCTTCATAC+AGG + chr1_4:55101259-55101278 Msa0170760:CDS 45.0%
GAACCTGTATGAAGCAGTCA+TGG - chr1_4:55101265-55101284 None:intergenic 45.0%
GAATGTAGAGAGAGAGAGAG+AGG - chr1_4:55101302-55101321 None:intergenic 45.0%
GCATGAGACACTCAAACACA+TGG + chr1_4:55101324-55101343 Msa0170760:intron 45.0%
TGAGACACTCAAACACATGG+TGG + chr1_4:55101327-55101346 Msa0170760:intron 45.0%
TGCCCTCAGAGCAATGATTA+AGG + chr1_4:55101423-55101442 Msa0170760:intron 45.0%
AAACAGTGCATTCAGGGCAT+TGG - chr1_4:55101541-55101560 None:intergenic 45.0%
ATTGACCCATCACATCCCTA+GGG - chr1_4:55102035-55102054 None:intergenic 45.0%
AATTGACCCATCACATCCCT+AGG - chr1_4:55102036-55102055 None:intergenic 45.0%
TACGTAGAAAACTGCTTCGG+TGG - chr1_4:55102210-55102229 None:intergenic 45.0%
ATCACGCAGTTTGGTCAACA+TGG + chr1_4:55102589-55102608 Msa0170760:intron 45.0%
AATCCAAAGCTGGATCCACT+TGG - chr1_4:55102803-55102822 None:intergenic 45.0%
TCTACTCTAGCCCAAGAACA+AGG + chr1_4:55102967-55102986 Msa0170760:CDS 45.0%
TCAACAAGCCATGGTGAAGA+TGG + chr1_4:55103040-55103059 Msa0170760:CDS 45.0%
CAACAAGCCATGGTGAAGAT+GGG + chr1_4:55103041-55103060 Msa0170760:CDS 45.0%
AAGCAAACCCATCTTCACCA+TGG - chr1_4:55103051-55103070 None:intergenic 45.0%
CTTCCATGACTGCTTCATAC+AGG + chr1_4:55101259-55101278 Msa0170760:CDS 45.0%
GAACCTGTATGAAGCAGTCA+TGG - chr1_4:55101265-55101284 None:intergenic 45.0%
GAATGTAGAGAGAGAGAGAG+AGG - chr1_4:55101302-55101321 None:intergenic 45.0%
GCATGAGACACTCAAACACA+TGG + chr1_4:55101324-55101343 Msa0170760:intron 45.0%
TGAGACACTCAAACACATGG+TGG + chr1_4:55101327-55101346 Msa0170760:intron 45.0%
TGCCCTCAGAGCAATGATTA+AGG + chr1_4:55101423-55101442 Msa0170760:intron 45.0%
AAACAGTGCATTCAGGGCAT+TGG - chr1_4:55101541-55101560 None:intergenic 45.0%
ATTGACCCATCACATCCCTA+GGG - chr1_4:55102035-55102054 None:intergenic 45.0%
AATTGACCCATCACATCCCT+AGG - chr1_4:55102036-55102055 None:intergenic 45.0%
TACGTAGAAAACTGCTTCGG+TGG - chr1_4:55102210-55102229 None:intergenic 45.0%
ATCACGCAGTTTGGTCAACA+TGG + chr1_4:55102589-55102608 Msa0170760:intron 45.0%
AATCCAAAGCTGGATCCACT+TGG - chr1_4:55102803-55102822 None:intergenic 45.0%
TCTACTCTAGCCCAAGAACA+AGG + chr1_4:55102967-55102986 Msa0170760:CDS 45.0%
TCAACAAGCCATGGTGAAGA+TGG + chr1_4:55103040-55103059 Msa0170760:CDS 45.0%
CAACAAGCCATGGTGAAGAT+GGG + chr1_4:55103041-55103060 Msa0170760:CDS 45.0%
AAGCAAACCCATCTTCACCA+TGG - chr1_4:55103051-55103070 None:intergenic 45.0%
ATAAGAGCAGCTGCAAGGGT+GGG - chr1_4:55101230-55101249 None:intergenic 50.0%
TATAAGAGCAGCTGCAAGGG+TGG - chr1_4:55101231-55101250 None:intergenic 50.0%
AGAGAGAGAGAGGGAGAGAA+GGG - chr1_4:55101292-55101311 None:intergenic 50.0%
!! AATCATTGCTCTGAGGGCAC+TGG - chr1_4:55101422-55101441 None:intergenic 50.0%
AGCAACCACTGACGTCGTAT+TGG - chr1_4:55101839-55101858 None:intergenic 50.0%
TGCACGACACACATATACGG+TGG - chr1_4:55101887-55101906 None:intergenic 50.0%
TTTGTCCCCTAGGGATGTGA+TGG + chr1_4:55102026-55102045 Msa0170760:intron 50.0%
TTGTCCCCTAGGGATGTGAT+GGG + chr1_4:55102027-55102046 Msa0170760:intron 50.0%
TTGACCCATCACATCCCTAG+GGG - chr1_4:55102034-55102053 None:intergenic 50.0%
ACCAAACTGCGTGATGAGCT+CGG - chr1_4:55102584-55102603 None:intergenic 50.0%
CAAGAGATGGTCGCTCTATC+CGG + chr1_4:55102622-55102641 Msa0170760:intron 50.0%
! TATGCAGGGGCACATACACT+AGG + chr1_4:55102741-55102760 Msa0170760:intron 50.0%
CACATACACTAGGAGTGGCA+AGG + chr1_4:55102751-55102770 Msa0170760:intron 50.0%
AAGCCAAGTGGATCCAGCTT+TGG + chr1_4:55102797-55102816 Msa0170760:CDS 50.0%
ATAAGAGCAGCTGCAAGGGT+GGG - chr1_4:55101230-55101249 None:intergenic 50.0%
TATAAGAGCAGCTGCAAGGG+TGG - chr1_4:55101231-55101250 None:intergenic 50.0%
AGAGAGAGAGAGGGAGAGAA+GGG - chr1_4:55101292-55101311 None:intergenic 50.0%
!! AATCATTGCTCTGAGGGCAC+TGG - chr1_4:55101422-55101441 None:intergenic 50.0%
AGCAACCACTGACGTCGTAT+TGG - chr1_4:55101839-55101858 None:intergenic 50.0%
TGCACGACACACATATACGG+TGG - chr1_4:55101887-55101906 None:intergenic 50.0%
TTTGTCCCCTAGGGATGTGA+TGG + chr1_4:55102026-55102045 Msa0170760:intron 50.0%
TTGTCCCCTAGGGATGTGAT+GGG + chr1_4:55102027-55102046 Msa0170760:intron 50.0%
TTGACCCATCACATCCCTAG+GGG - chr1_4:55102034-55102053 None:intergenic 50.0%
ACCAAACTGCGTGATGAGCT+CGG - chr1_4:55102584-55102603 None:intergenic 50.0%
CAAGAGATGGTCGCTCTATC+CGG + chr1_4:55102622-55102641 Msa0170760:intron 50.0%
! TATGCAGGGGCACATACACT+AGG + chr1_4:55102741-55102760 Msa0170760:intron 50.0%
CACATACACTAGGAGTGGCA+AGG + chr1_4:55102751-55102770 Msa0170760:intron 50.0%
AAGCCAAGTGGATCCAGCTT+TGG + chr1_4:55102797-55102816 Msa0170760:CDS 50.0%
GAGAGAGAGAGGGAGAGAAG+GGG - chr1_4:55101291-55101310 None:intergenic 55.0%
GAGAGAGAGAGAGGGAGAGA+AGG - chr1_4:55101293-55101312 None:intergenic 55.0%
! CCACTGACGTCGTATTGGCA+TGG - chr1_4:55101834-55101853 None:intergenic 55.0%
CCATGCCAATACGACGTCAG+TGG + chr1_4:55101831-55101850 Msa0170760:intron 55.0%
GAGCTTGAAAACCGATGCCC+TGG + chr1_4:55102149-55102168 Msa0170760:CDS 55.0%
ATGAAACCACGCCAGGGCAT+CGG - chr1_4:55102163-55102182 None:intergenic 55.0%
CAGCACATGAAACCACGCCA+GGG - chr1_4:55102169-55102188 None:intergenic 55.0%
TCAGCACATGAAACCACGCC+AGG - chr1_4:55102170-55102189 None:intergenic 55.0%
TCCGAGCTCATCACGCAGTT+TGG + chr1_4:55102580-55102599 Msa0170760:intron 55.0%
! AGGGGCACATACACTAGGAG+TGG + chr1_4:55102746-55102765 Msa0170760:intron 55.0%
GAGAGAGAGAGGGAGAGAAG+GGG - chr1_4:55101291-55101310 None:intergenic 55.0%
GAGAGAGAGAGAGGGAGAGA+AGG - chr1_4:55101293-55101312 None:intergenic 55.0%
! CCACTGACGTCGTATTGGCA+TGG - chr1_4:55101834-55101853 None:intergenic 55.0%
CCATGCCAATACGACGTCAG+TGG + chr1_4:55101831-55101850 Msa0170760:intron 55.0%
GAGCTTGAAAACCGATGCCC+TGG + chr1_4:55102149-55102168 Msa0170760:CDS 55.0%
ATGAAACCACGCCAGGGCAT+CGG - chr1_4:55102163-55102182 None:intergenic 55.0%
CAGCACATGAAACCACGCCA+GGG - chr1_4:55102169-55102188 None:intergenic 55.0%
TCAGCACATGAAACCACGCC+AGG - chr1_4:55102170-55102189 None:intergenic 55.0%
TCCGAGCTCATCACGCAGTT+TGG + chr1_4:55102580-55102599 Msa0170760:intron 55.0%
! AGGGGCACATACACTAGGAG+TGG + chr1_4:55102746-55102765 Msa0170760:intron 55.0%
TGAAAACCGATGCCCTGGCG+TGG + chr1_4:55102154-55102173 Msa0170760:CDS 60.0%
TGAAAACCGATGCCCTGGCG+TGG + chr1_4:55102154-55102173 Msa0170760:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55100907 55103127 55100907 ID=Msa0170760;Name=Msa0170760
chr1_4 mRNA 55100907 55103127 55100907 ID=Msa0170760-mRNA-1;Parent=Msa0170760;Name=Msa0170760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=116|0.33|0.25|1|1|1|4|0|288
chr1_4 exon 55100907 55101280 55100907 ID=Msa0170760-mRNA-1:exon:16472;Parent=Msa0170760-mRNA-1
chr1_4 exon 55102038 55102175 55102038 ID=Msa0170760-mRNA-1:exon:16473;Parent=Msa0170760-mRNA-1
chr1_4 exon 55102481 55102596 55102481 ID=Msa0170760-mRNA-1:exon:16474;Parent=Msa0170760-mRNA-1
chr1_4 exon 55102773 55103127 55102773 ID=Msa0170760-mRNA-1:exon:16475;Parent=Msa0170760-mRNA-1
chr1_4 five_prime_UTR 55100907 55101022 55100907 ID=Msa0170760-mRNA-1:five_prime_utr;Parent=Msa0170760-mRNA-1
chr1_4 CDS 55101023 55101280 55101023 ID=Msa0170760-mRNA-1:cds;Parent=Msa0170760-mRNA-1
chr1_4 CDS 55102038 55102175 55102038 ID=Msa0170760-mRNA-1:cds;Parent=Msa0170760-mRNA-1
chr1_4 CDS 55102481 55102596 55102481 ID=Msa0170760-mRNA-1:cds;Parent=Msa0170760-mRNA-1
chr1_4 CDS 55102773 55103127 55102773 ID=Msa0170760-mRNA-1:cds;Parent=Msa0170760-mRNA-1
Gene Sequence

>Msa0170760

ATGATGTATAAATCTTCTATGAAGTCATTGAAAATGGTAATGGCTAAATTGATGACATTTTTTATGCTAATAGAGGTGATTACATGCCAATTTGGATTTGGATTTGGATTTGGAGGAGGGTTAAACATGAACTACTATTTGATGAGTTGCCCTTTTGTTGAACCAGTTGTTAAGGACATAGTGAATAGAGCTTTGGACAATGATCCCACCCTTGCAGCTGCTCTTATAAGAATGCACTTCCATGACTGCTTCATACAGGGATGTGATGGGTCAATTCTGCTTGATTCCACTAAGGATAATACAGCAGAAAAGGATTCACCAGCAAATTTGAGTCTAAGAGGATATGAAGTAATTGATGATATCAAAGATGAGCTTGAAAACCGATGCCCTGGCGTGGCTGGAGGTCCAGTGTATAACATACCTAAAGGTAGAAAGGATGGAAGAAGATCAAAAATAGAGGACACTAGAAATTTGCCATCACCTTCTTTTAATGCATCCGAGCTCATCACGCAGTGTTCTTCATTCAAGAACAGATTAAGCCAAGTGGATCCAGCTTTGGATTCAGAATTTGCCAGGACACTATCAAGAACATGTACTTCTGGTGACAATGCAGAACAACCATTTGATGCAACTAGGAACGATTTTGACAATGTTTATTTCAACGCTTTGTTGAGGAAAAATGGTGTTTTGTTTTCAGATCAAACACTCTACTCTAGCCCAAGAACAAGGAACATTGTGAATGCTTATGCAATGAACCAAGCCATGTTCTTCCTAGATTTTCAACAAGCCATGGTGAAGATGGGTTTGCTTGATATTAAACAAGGTTCCAATGGTGAAGTACGAGCAAATTGCCGCAAAATTAACTAA
Protein sequence

>Msa0170760

MMYKSSMKSLKMVMAKLMTFFMLIEVITCQFGFGFGFGGGLNMNYYLMSCPFVEPVVKDIVNRALDNDPTLAAALIRMHFHDCFIQGCDGSILLDSTKDNTAEKDSPANLSLRGYEVIDDIKDELENRCPGVAGGPVYNIPKGRKDGRRSKIEDTRNLPSPSFNASELITQCSSFKNRLSQVDPALDSEFARTLSRTCTSGDNAEQPFDATRNDFDNVYFNALLRKNGVLFSDQTLYSSPRTRNIVNAYAMNQAMFFLDFQQAMVKMGLLDIKQGSNGEVRANCRKIN*