Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030790 | XP_013468807.1 | 97.554 | 327 | 7 | 1 | 1 | 326 | 1 | 327 | 0.0 | 661 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030790 | sp|Q9SZB9|PER47_ARATH | 72.013 | 318 | 85 | 2 | 10 | 326 | 11 | 325 | 4.60e-169 | 475 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005390 | Msa0030790 | 0.821951 | 3.072854e-53 | -8.615850e-47 |
Msa0030790 | Msa0036550 | 0.802011 | 6.868779e-49 | -8.615850e-47 |
Msa0030790 | Msa0045620 | 0.800653 | 1.303142e-48 | -8.615850e-47 |
Msa0030790 | Msa0053850 | 0.817064 | 4.002362e-52 | -8.615850e-47 |
Msa0030790 | Msa0078200 | 0.929779 | 4.257226e-93 | -8.615850e-47 |
Msa0030790 | Msa0136090 | 0.822094 | 2.846997e-53 | -8.615850e-47 |
Msa0030790 | Msa0170760 | 0.894152 | 3.224203e-75 | -8.615850e-47 |
Msa0030790 | Msa0267910 | 0.942084 | 1.342788e-101 | -8.615850e-47 |
Msa0030790 | Msa0336430 | 0.804130 | 2.504353e-49 | -8.615850e-47 |
Msa0030790 | Msa0336520 | 0.818652 | 1.753186e-52 | -8.615850e-47 |
Msa0030790 | Msa0623310 | 0.801864 | 7.364186e-49 | -8.615850e-47 |
Msa0030790 | Msa0626980 | 0.804432 | 2.166368e-49 | -8.615850e-47 |
Msa0030790 | Msa1119670 | 0.800749 | 1.245673e-48 | -8.615850e-47 |
Msa0030790 | Msa1363690 | 0.809043 | 2.299814e-50 | -8.615850e-47 |
Msa0030790 | Msa1371800 | 0.806964 | 6.369694e-50 | -8.615850e-47 |
Msa0030790 | Msa1376310 | 0.804004 | 2.660212e-49 | -8.615850e-47 |
Msa0030790 | Msa1395720 | 0.801154 | 1.029178e-48 | -8.615850e-47 |
Msa0030790 | Msa1396550 | 0.804503 | 2.093313e-49 | -8.615850e-47 |
Msa0030790 | Msa1438140 | 0.996914 | 4.618621e-234 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030790 | MtrunA17_Chr1g0188431 | 97.554 | 327 | 7 | 1 | 1 | 326 | 1 | 327 | 0.0 | 661 |
Msa0030790 | MtrunA17_Chr6g0477071 | 63.492 | 315 | 114 | 1 | 13 | 326 | 28 | 342 | 9.32e-149 | 422 |
Msa0030790 | MtrunA17_Chr5g0405991 | 46.440 | 323 | 157 | 4 | 13 | 326 | 1 | 316 | 1.01e-100 | 299 |
Msa0030790 | MtrunA17_Chr8g0371381 | 48.173 | 301 | 143 | 3 | 35 | 326 | 23 | 319 | 5.43e-97 | 289 |
Msa0030790 | MtrunA17_Chr1g0157051 | 46.032 | 315 | 154 | 5 | 17 | 322 | 7 | 314 | 3.82e-95 | 285 |
Msa0030790 | MtrunA17_Chr1g0204011 | 47.315 | 298 | 146 | 3 | 38 | 326 | 27 | 322 | 1.30e-92 | 278 |
Msa0030790 | MtrunA17_Chr3g0128061 | 46.512 | 301 | 149 | 5 | 38 | 326 | 26 | 326 | 5.12e-87 | 264 |
Msa0030790 | MtrunA17_Chr1g0194151 | 44.237 | 321 | 164 | 7 | 21 | 326 | 13 | 333 | 2.08e-86 | 263 |
Msa0030790 | MtrunA17_Chr3g0129051 | 42.593 | 324 | 170 | 6 | 10 | 326 | 8 | 322 | 7.52e-86 | 261 |
Msa0030790 | MtrunA17_Chr4g0024121 | 44.000 | 300 | 157 | 3 | 38 | 326 | 27 | 326 | 2.26e-85 | 260 |
Msa0030790 | MtrunA17_Chr7g0268501 | 42.056 | 321 | 172 | 6 | 17 | 326 | 3 | 320 | 3.96e-84 | 256 |
Msa0030790 | MtrunA17_Chr7g0268521 | 42.056 | 321 | 172 | 6 | 17 | 326 | 3 | 320 | 3.96e-84 | 256 |
Msa0030790 | MtrunA17_Chr1g0194271 | 42.378 | 328 | 167 | 7 | 21 | 326 | 13 | 340 | 7.16e-84 | 256 |
Msa0030790 | MtrunA17_Chr3g0114451 | 45.578 | 294 | 154 | 5 | 38 | 326 | 26 | 318 | 1.23e-83 | 255 |
Msa0030790 | MtrunA17_Chr1g0213061 | 40.867 | 323 | 182 | 6 | 11 | 326 | 1 | 321 | 4.40e-82 | 252 |
Msa0030790 | MtrunA17_Chr7g0244461 | 43.408 | 311 | 169 | 6 | 21 | 326 | 4 | 312 | 4.43e-82 | 251 |
Msa0030790 | MtrunA17_Chr5g0432441 | 41.964 | 336 | 175 | 7 | 1 | 326 | 1 | 326 | 5.21e-82 | 251 |
Msa0030790 | MtrunA17_Chr7g0254231 | 42.712 | 295 | 162 | 3 | 36 | 326 | 20 | 311 | 6.40e-82 | 251 |
Msa0030790 | MtrunA17_Chr4g0068621 | 45.033 | 302 | 156 | 6 | 35 | 326 | 35 | 336 | 4.19e-81 | 249 |
Msa0030790 | MtrunA17_Chr3g0106921 | 42.320 | 319 | 167 | 6 | 16 | 326 | 11 | 320 | 4.65e-81 | 249 |
Msa0030790 | MtrunA17_Chr7g0224371 | 42.947 | 319 | 175 | 5 | 14 | 326 | 5 | 322 | 4.60e-80 | 246 |
Msa0030790 | MtrunA17_Chr7g0254201 | 42.517 | 294 | 163 | 3 | 38 | 326 | 20 | 312 | 5.80e-80 | 246 |
Msa0030790 | MtrunA17_Chr2g0322861 | 38.182 | 330 | 189 | 7 | 9 | 326 | 60 | 386 | 9.85e-80 | 248 |
Msa0030790 | MtrunA17_Chr5g0402571 | 42.000 | 300 | 163 | 4 | 38 | 326 | 27 | 326 | 1.02e-79 | 245 |
Msa0030790 | MtrunA17_Chr5g0432351 | 44.631 | 298 | 155 | 7 | 38 | 326 | 25 | 321 | 1.78e-79 | 245 |
Msa0030790 | MtrunA17_Chr5g0438021 | 41.615 | 322 | 177 | 6 | 12 | 326 | 8 | 325 | 1.87e-79 | 245 |
Msa0030790 | MtrunA17_Chr3g0106901 | 44.409 | 313 | 163 | 6 | 19 | 326 | 17 | 323 | 2.17e-79 | 244 |
Msa0030790 | MtrunA17_Chr7g0244451 | 42.105 | 323 | 173 | 6 | 9 | 326 | 3 | 316 | 3.65e-79 | 244 |
Msa0030790 | MtrunA17_Chr5g0402581 | 41.000 | 300 | 166 | 4 | 38 | 326 | 27 | 326 | 1.21e-78 | 243 |
Msa0030790 | MtrunA17_Chr3g0129061 | 41.975 | 324 | 172 | 6 | 10 | 326 | 8 | 322 | 1.32e-78 | 243 |
Msa0030790 | MtrunA17_Chr1g0164891 | 44.333 | 300 | 152 | 7 | 42 | 326 | 93 | 392 | 1.63e-78 | 244 |
Msa0030790 | MtrunA17_Chr5g0432341 | 43.624 | 298 | 158 | 7 | 38 | 326 | 25 | 321 | 1.83e-78 | 242 |
Msa0030790 | MtrunA17_Chr2g0292091 | 41.391 | 302 | 164 | 5 | 38 | 326 | 24 | 325 | 6.33e-77 | 239 |
Msa0030790 | MtrunA17_Chr7g0258811 | 41.584 | 303 | 163 | 6 | 38 | 326 | 69 | 371 | 8.91e-77 | 239 |
Msa0030790 | MtrunA17_Chr1g0175561 | 42.295 | 305 | 162 | 6 | 36 | 326 | 22 | 326 | 2.33e-76 | 237 |
Msa0030790 | MtrunA17_Chr6g0460711 | 39.815 | 324 | 179 | 5 | 9 | 326 | 1 | 314 | 2.46e-76 | 236 |
Msa0030790 | MtrunA17_Chr2g0320071 | 39.185 | 319 | 187 | 6 | 13 | 326 | 1 | 317 | 3.07e-76 | 236 |
Msa0030790 | MtrunA17_Chr2g0292101 | 41.060 | 302 | 165 | 5 | 38 | 326 | 25 | 326 | 5.78e-76 | 236 |
Msa0030790 | MtrunA17_Chr4g0013721 | 42.809 | 299 | 159 | 5 | 38 | 326 | 100 | 396 | 7.67e-76 | 238 |
Msa0030790 | MtrunA17_Chr4g0013171 | 40.741 | 297 | 168 | 6 | 37 | 326 | 26 | 321 | 8.88e-76 | 235 |
Msa0030790 | MtrunA17_Chr4g0013191 | 43.643 | 291 | 158 | 4 | 42 | 326 | 50 | 340 | 1.80e-75 | 235 |
Msa0030790 | MtrunA17_Chr4g0013181 | 41.638 | 293 | 163 | 6 | 41 | 326 | 62 | 353 | 2.25e-75 | 235 |
Msa0030790 | MtrunA17_Chr4g0013821 | 42.140 | 299 | 161 | 5 | 38 | 326 | 28 | 324 | 2.47e-75 | 235 |
Msa0030790 | MtrunA17_Chr1g0155611 | 41.914 | 303 | 163 | 6 | 37 | 326 | 45 | 347 | 4.24e-75 | 234 |
Msa0030790 | MtrunA17_Chr4g0038151 | 40.000 | 325 | 180 | 6 | 10 | 326 | 4 | 321 | 4.65e-75 | 233 |
Msa0030790 | MtrunA17_Chr5g0404721 | 40.514 | 311 | 173 | 6 | 28 | 326 | 20 | 330 | 5.05e-75 | 234 |
Msa0030790 | MtrunA17_Chr5g0432331 | 41.946 | 298 | 163 | 7 | 38 | 326 | 56 | 352 | 2.84e-74 | 233 |
Msa0030790 | MtrunA17_Chr6g0467161 | 40.476 | 294 | 170 | 3 | 37 | 326 | 44 | 336 | 3.15e-74 | 232 |
Msa0030790 | MtrunA17_Chr4g0013201 | 43.197 | 294 | 161 | 5 | 38 | 326 | 46 | 338 | 4.30e-74 | 231 |
Msa0030790 | MtrunA17_Chr2g0291751 | 39.697 | 330 | 179 | 7 | 17 | 326 | 1 | 330 | 7.15e-74 | 231 |
Msa0030790 | MtrunA17_Chr2g0279041 | 39.542 | 306 | 169 | 5 | 34 | 326 | 23 | 325 | 9.71e-74 | 230 |
Msa0030790 | MtrunA17_Chr3g0129041 | 40.741 | 324 | 176 | 6 | 10 | 326 | 8 | 322 | 9.89e-74 | 230 |
Msa0030790 | MtrunA17_Chr5g0400331 | 42.810 | 306 | 158 | 7 | 38 | 326 | 26 | 331 | 1.84e-73 | 229 |
Msa0030790 | MtrunA17_Chr6g0467251 | 42.414 | 290 | 163 | 2 | 37 | 322 | 35 | 324 | 2.51e-73 | 230 |
Msa0030790 | MtrunA17_Chr2g0320091 | 40.068 | 292 | 168 | 6 | 41 | 326 | 28 | 318 | 2.53e-73 | 229 |
Msa0030790 | MtrunA17_Chr8g0364291 | 42.475 | 299 | 159 | 5 | 41 | 326 | 26 | 324 | 6.16e-73 | 228 |
Msa0030790 | MtrunA17_Chr4g0038161 | 39.077 | 325 | 182 | 5 | 10 | 326 | 4 | 320 | 8.92e-73 | 228 |
Msa0030790 | MtrunA17_Chr7g0225221 | 38.110 | 328 | 186 | 7 | 7 | 326 | 2 | 320 | 1.29e-72 | 227 |
Msa0030790 | MtrunA17_Chr1g0197411 | 39.634 | 328 | 180 | 8 | 13 | 326 | 7 | 330 | 1.34e-72 | 228 |
Msa0030790 | MtrunA17_Chr5g0401431 | 41.060 | 302 | 164 | 5 | 38 | 325 | 27 | 328 | 1.60e-72 | 227 |
Msa0030790 | MtrunA17_Chr2g0320101 | 40.893 | 291 | 166 | 5 | 41 | 326 | 28 | 317 | 3.66e-72 | 226 |
Msa0030790 | MtrunA17_Chr4g0043391 | 38.485 | 330 | 186 | 6 | 6 | 326 | 3 | 324 | 4.87e-72 | 226 |
Msa0030790 | MtrunA17_Chr5g0421411 | 44.086 | 279 | 140 | 7 | 64 | 326 | 7 | 285 | 5.36e-72 | 224 |
Msa0030790 | MtrunA17_Chr6g0467121 | 41.216 | 296 | 163 | 6 | 37 | 326 | 73 | 363 | 6.10e-72 | 228 |
Msa0030790 | MtrunA17_Chr2g0292261 | 38.486 | 317 | 182 | 5 | 23 | 326 | 14 | 330 | 6.16e-72 | 226 |
Msa0030790 | MtrunA17_Chr2g0296621 | 39.865 | 296 | 167 | 4 | 38 | 326 | 50 | 341 | 2.78e-71 | 224 |
Msa0030790 | MtrunA17_Chr8g0372601 | 40.584 | 308 | 163 | 6 | 35 | 326 | 27 | 330 | 5.40e-71 | 223 |
Msa0030790 | MtrunA17_Chr2g0292151 | 39.275 | 331 | 179 | 8 | 17 | 326 | 1 | 330 | 7.62e-71 | 224 |
Msa0030790 | MtrunA17_Chr2g0320051 | 38.509 | 322 | 186 | 8 | 13 | 326 | 1 | 318 | 1.55e-70 | 222 |
Msa0030790 | MtrunA17_Chr4g0038171 | 41.611 | 298 | 165 | 5 | 38 | 326 | 24 | 321 | 2.53e-70 | 221 |
Msa0030790 | MtrunA17_Chr2g0292211 | 37.647 | 340 | 192 | 8 | 7 | 326 | 2 | 341 | 2.77e-70 | 223 |
Msa0030790 | MtrunA17_Chr2g0299691 | 42.857 | 301 | 154 | 8 | 42 | 326 | 60 | 358 | 5.79e-70 | 221 |
Msa0030790 | MtrunA17_Chr4g0070951 | 39.938 | 323 | 175 | 8 | 19 | 326 | 11 | 329 | 7.32e-70 | 220 |
Msa0030790 | MtrunA17_Chr2g0292241 | 38.170 | 317 | 183 | 6 | 23 | 326 | 14 | 330 | 9.55e-70 | 221 |
Msa0030790 | MtrunA17_Chr4g0063671 | 39.274 | 303 | 167 | 4 | 38 | 326 | 21 | 320 | 1.16e-69 | 219 |
Msa0030790 | MtrunA17_Chr2g0320061 | 37.812 | 320 | 191 | 7 | 13 | 326 | 1 | 318 | 2.09e-69 | 219 |
Msa0030790 | MtrunA17_Chr2g0292271 | 37.618 | 319 | 179 | 6 | 28 | 326 | 12 | 330 | 2.83e-69 | 219 |
Msa0030790 | MtrunA17_Chr2g0292111 | 38.066 | 331 | 183 | 8 | 17 | 326 | 1 | 330 | 7.63e-69 | 218 |
Msa0030790 | MtrunA17_Chr2g0292181 | 36.533 | 323 | 192 | 6 | 17 | 326 | 17 | 339 | 1.44e-68 | 218 |
Msa0030790 | MtrunA17_Chr4g0046131 | 39.474 | 342 | 186 | 9 | 2 | 322 | 1 | 342 | 3.69e-68 | 216 |
Msa0030790 | MtrunA17_Chr4g0053871 | 37.540 | 309 | 184 | 5 | 23 | 322 | 12 | 320 | 1.22e-67 | 214 |
Msa0030790 | MtrunA17_Chr2g0292251 | 37.987 | 308 | 178 | 6 | 32 | 326 | 22 | 329 | 2.44e-67 | 214 |
Msa0030790 | MtrunA17_Chr3g0107881 | 40.134 | 299 | 168 | 8 | 38 | 326 | 27 | 324 | 3.84e-67 | 213 |
Msa0030790 | MtrunA17_Chr2g0320031 | 36.250 | 320 | 197 | 6 | 13 | 326 | 1 | 319 | 3.99e-67 | 213 |
Msa0030790 | MtrunA17_Chr1g0148021 | 36.923 | 325 | 185 | 7 | 16 | 326 | 10 | 328 | 4.50e-67 | 213 |
Msa0030790 | MtrunA17_Chr6g0451571 | 39.934 | 303 | 166 | 6 | 38 | 326 | 34 | 334 | 5.77e-67 | 213 |
Msa0030790 | MtrunA17_Chr2g0292291 | 36.792 | 318 | 187 | 5 | 23 | 326 | 15 | 332 | 1.26e-65 | 210 |
Msa0030790 | MtrunA17_Chr4g0076211 | 37.627 | 295 | 174 | 3 | 39 | 326 | 42 | 333 | 5.76e-65 | 208 |
Msa0030790 | MtrunA17_Chr4g0072091 | 37.954 | 303 | 171 | 6 | 38 | 326 | 24 | 323 | 3.84e-62 | 200 |
Msa0030790 | MtrunA17_Chr3g0136751 | 36.254 | 331 | 187 | 7 | 11 | 326 | 1 | 322 | 1.72e-60 | 196 |
Msa0030790 | MtrunA17_Chr4g0075241 | 36.508 | 315 | 189 | 5 | 23 | 326 | 13 | 327 | 2.19e-60 | 196 |
Msa0030790 | MtrunA17_Chr2g0278671 | 37.748 | 302 | 173 | 7 | 38 | 326 | 24 | 323 | 3.54e-60 | 195 |
Msa0030790 | MtrunA17_Chr5g0413051 | 37.134 | 307 | 177 | 6 | 36 | 326 | 71 | 377 | 4.89e-60 | 196 |
Msa0030790 | MtrunA17_Chr2g0316481 | 34.835 | 333 | 175 | 6 | 35 | 325 | 73 | 405 | 5.69e-60 | 197 |
Msa0030790 | MtrunA17_Chr2g0311251 | 34.535 | 333 | 175 | 7 | 35 | 325 | 8 | 339 | 7.24e-59 | 192 |
Msa0030790 | MtrunA17_Chr2g0329641 | 37.954 | 303 | 171 | 4 | 38 | 326 | 36 | 335 | 1.22e-58 | 192 |
Msa0030790 | MtrunA17_Chr2g0316191 | 34.524 | 336 | 173 | 7 | 35 | 325 | 73 | 406 | 2.97e-58 | 192 |
Msa0030790 | MtrunA17_Chr2g0316791 | 33.934 | 333 | 178 | 7 | 35 | 325 | 73 | 405 | 5.61e-58 | 192 |
Msa0030790 | MtrunA17_Chr2g0316831 | 34.627 | 335 | 173 | 7 | 35 | 325 | 109 | 441 | 7.13e-58 | 192 |
Msa0030790 | MtrunA17_Chr5g0432401 | 38.047 | 297 | 135 | 8 | 38 | 325 | 29 | 285 | 6.42e-56 | 183 |
Msa0030790 | MtrunA17_Chr4g0074851 | 34.014 | 294 | 186 | 3 | 37 | 322 | 31 | 324 | 1.00e-55 | 184 |
Msa0030790 | MtrunA17_Chr2g0279061 | 38.760 | 258 | 142 | 5 | 82 | 326 | 12 | 266 | 5.83e-54 | 177 |
Msa0030790 | MtrunA17_Chr2g0311241 | 30.481 | 374 | 176 | 7 | 35 | 325 | 57 | 429 | 5.88e-54 | 182 |
Msa0030790 | MtrunA17_Chr1g0181431 | 31.313 | 297 | 196 | 3 | 38 | 326 | 27 | 323 | 6.00e-50 | 169 |
Msa0030790 | MtrunA17_Chr1g0181511 | 30.976 | 297 | 197 | 3 | 38 | 326 | 27 | 323 | 3.57e-48 | 164 |
Msa0030790 | MtrunA17_Chr4g0004591 | 32.390 | 318 | 146 | 6 | 38 | 325 | 77 | 355 | 5.21e-46 | 159 |
Msa0030790 | MtrunA17_Chr1g0181481 | 30.640 | 297 | 198 | 3 | 38 | 326 | 27 | 323 | 9.90e-46 | 158 |
Msa0030790 | MtrunA17_Chr2g0316811 | 36.283 | 226 | 120 | 4 | 35 | 236 | 47 | 272 | 3.66e-40 | 143 |
Msa0030790 | MtrunA17_Chr3g0114461 | 42.391 | 184 | 100 | 5 | 148 | 326 | 10 | 192 | 5.45e-40 | 139 |
Msa0030790 | MtrunA17_Chr2g0292281 | 37.198 | 207 | 114 | 5 | 129 | 326 | 17 | 216 | 1.49e-37 | 134 |
Msa0030790 | MtrunA17_Chr2g0316141 | 30.824 | 279 | 144 | 6 | 84 | 325 | 11 | 277 | 4.54e-36 | 131 |
Msa0030790 | MtrunA17_Chr2g0316181 | 30.824 | 279 | 144 | 6 | 84 | 325 | 11 | 277 | 4.54e-36 | 131 |
Msa0030790 | MtrunA17_Chr3g0114491 | 50.000 | 110 | 54 | 1 | 38 | 146 | 18 | 127 | 1.72e-29 | 110 |
Msa0030790 | MtrunA17_Chr5g0432321 | 43.590 | 117 | 62 | 3 | 158 | 271 | 17 | 132 | 3.33e-24 | 95.9 |
Msa0030790 | MtrunA17_Chr7g0254181 | 41.463 | 123 | 69 | 2 | 81 | 202 | 2 | 122 | 5.07e-23 | 93.2 |
Msa0030790 | MtrunA17_Chr6g0468731 | 55.882 | 68 | 27 | 1 | 77 | 144 | 22 | 86 | 3.26e-20 | 84.0 |
Msa0030790 | MtrunA17_Chr1g0181491 | 35.135 | 111 | 71 | 1 | 34 | 144 | 8 | 117 | 4.39e-20 | 85.1 |
Msa0030790 | MtrunA17_Chr3g0137751 | 30.469 | 256 | 109 | 8 | 69 | 305 | 105 | 310 | 1.69e-19 | 87.4 |
Msa0030790 | MtrunA17_Chr1g0196191 | 54.167 | 72 | 33 | 0 | 73 | 144 | 20 | 91 | 2.06e-19 | 83.6 |
Msa0030790 | MtrunA17_Chr1g0181501 | 28.877 | 187 | 124 | 4 | 148 | 326 | 4 | 189 | 3.04e-17 | 78.6 |
Msa0030790 | MtrunA17_Chr3g0104101 | 37.589 | 141 | 74 | 5 | 200 | 326 | 9 | 149 | 3.08e-17 | 77.4 |
Msa0030790 | MtrunA17_Chr7g0254171 | 45.205 | 73 | 40 | 0 | 83 | 155 | 3 | 75 | 6.46e-17 | 76.3 |
Msa0030790 | MtrunA17_Chr3g0124821 | 29.389 | 262 | 138 | 11 | 72 | 311 | 121 | 357 | 1.61e-14 | 73.6 |
Msa0030790 | MtrunA17_Chr5g0405731 | 27.407 | 270 | 144 | 9 | 50 | 308 | 14 | 242 | 2.91e-14 | 72.0 |
Msa0030790 | MtrunA17_Chr4g0037131 | 28.261 | 276 | 134 | 12 | 50 | 308 | 15 | 243 | 3.55e-14 | 71.6 |
Msa0030790 | MtrunA17_Chr7g0268491 | 40.541 | 74 | 43 | 1 | 253 | 326 | 25 | 97 | 1.15e-12 | 63.2 |
Msa0030790 | MtrunA17_Chr4g0013811 | 42.254 | 71 | 40 | 1 | 148 | 217 | 6 | 76 | 4.77e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0030790 | AT4G33420.1 | 72.013 | 318 | 85 | 2 | 10 | 326 | 11 | 325 | 4.68e-170 | 475 |
Msa0030790 | AT4G33420.2 | 72.013 | 318 | 85 | 2 | 10 | 326 | 58 | 372 | 1.88e-169 | 476 |
Msa0030790 | AT5G42180.1 | 46.980 | 298 | 146 | 3 | 37 | 325 | 22 | 316 | 6.90e-96 | 287 |
Msa0030790 | AT5G51890.1 | 45.847 | 301 | 151 | 3 | 36 | 326 | 24 | 322 | 2.08e-92 | 278 |
Msa0030790 | AT4G11290.1 | 45.364 | 302 | 152 | 8 | 38 | 326 | 25 | 326 | 4.59e-89 | 270 |
Msa0030790 | AT1G05260.1 | 45.847 | 301 | 150 | 6 | 38 | 326 | 26 | 325 | 1.37e-86 | 263 |
Msa0030790 | AT4G16270.1 | 48.544 | 309 | 145 | 7 | 30 | 326 | 42 | 348 | 6.37e-85 | 260 |
Msa0030790 | AT4G36430.1 | 42.623 | 305 | 163 | 6 | 34 | 326 | 26 | 330 | 6.97e-84 | 256 |
Msa0030790 | AT3G03670.1 | 42.475 | 299 | 162 | 4 | 38 | 326 | 23 | 321 | 1.28e-82 | 253 |
Msa0030790 | AT5G05340.1 | 43.581 | 296 | 159 | 5 | 38 | 326 | 30 | 324 | 1.51e-79 | 245 |
Msa0030790 | AT2G18140.1 | 39.403 | 335 | 182 | 8 | 13 | 326 | 1 | 335 | 2.01e-79 | 245 |
Msa0030790 | AT2G35380.1 | 41.246 | 337 | 177 | 7 | 9 | 326 | 1 | 335 | 3.99e-79 | 244 |
Msa0030790 | AT1G68850.1 | 41.071 | 336 | 176 | 9 | 12 | 326 | 1 | 335 | 4.39e-79 | 244 |
Msa0030790 | AT2G18150.1 | 38.872 | 337 | 182 | 8 | 13 | 326 | 1 | 336 | 7.12e-79 | 244 |
Msa0030790 | AT5G66390.1 | 39.339 | 333 | 189 | 7 | 6 | 326 | 2 | 333 | 1.56e-78 | 243 |
Msa0030790 | AT5G17820.1 | 40.938 | 320 | 168 | 6 | 14 | 326 | 8 | 313 | 1.98e-78 | 242 |
Msa0030790 | AT1G71695.1 | 40.404 | 297 | 170 | 4 | 37 | 326 | 43 | 339 | 4.20e-78 | 243 |
Msa0030790 | AT3G21770.1 | 41.751 | 297 | 160 | 6 | 38 | 322 | 29 | 324 | 5.32e-78 | 241 |
Msa0030790 | AT5G06730.1 | 41.176 | 323 | 174 | 9 | 19 | 326 | 13 | 334 | 7.14e-78 | 242 |
Msa0030790 | AT5G19890.1 | 42.813 | 327 | 167 | 8 | 15 | 326 | 6 | 327 | 8.40e-78 | 241 |
Msa0030790 | AT5G06720.1 | 40.881 | 318 | 174 | 6 | 22 | 326 | 17 | 333 | 1.19e-77 | 241 |
Msa0030790 | AT5G64120.1 | 39.597 | 298 | 169 | 3 | 37 | 326 | 34 | 328 | 1.57e-77 | 240 |
Msa0030790 | AT5G17820.2 | 40.938 | 320 | 168 | 6 | 14 | 326 | 61 | 366 | 1.82e-77 | 241 |
Msa0030790 | AT5G39580.1 | 38.700 | 323 | 185 | 5 | 13 | 326 | 1 | 319 | 3.54e-77 | 239 |
Msa0030790 | AT5G19880.1 | 40.653 | 337 | 173 | 7 | 6 | 326 | 4 | 329 | 1.01e-76 | 238 |
Msa0030790 | AT1G44970.1 | 39.306 | 346 | 180 | 8 | 11 | 326 | 1 | 346 | 1.09e-76 | 239 |
Msa0030790 | AT3G01190.1 | 42.244 | 303 | 156 | 6 | 37 | 326 | 25 | 321 | 4.53e-76 | 236 |
Msa0030790 | AT5G58390.1 | 42.638 | 326 | 168 | 7 | 9 | 326 | 2 | 316 | 1.14e-75 | 235 |
Msa0030790 | AT1G05240.1 | 40.728 | 302 | 156 | 6 | 38 | 322 | 26 | 321 | 1.19e-75 | 235 |
Msa0030790 | AT1G05250.1 | 40.728 | 302 | 156 | 6 | 38 | 322 | 26 | 321 | 1.19e-75 | 235 |
Msa0030790 | AT3G28200.1 | 43.243 | 296 | 161 | 4 | 38 | 326 | 21 | 316 | 3.43e-75 | 234 |
Msa0030790 | AT2G22420.1 | 39.692 | 325 | 178 | 6 | 12 | 326 | 3 | 319 | 4.26e-75 | 234 |
Msa0030790 | AT5G15180.1 | 39.458 | 332 | 183 | 7 | 8 | 326 | 3 | 329 | 2.95e-74 | 232 |
Msa0030790 | AT3G50990.1 | 37.537 | 341 | 198 | 6 | 1 | 326 | 1 | 341 | 6.72e-74 | 231 |
Msa0030790 | AT1G49570.1 | 42.997 | 307 | 159 | 7 | 31 | 322 | 41 | 346 | 1.00e-73 | 231 |
Msa0030790 | AT5G58400.1 | 42.424 | 297 | 162 | 5 | 38 | 326 | 30 | 325 | 2.16e-73 | 229 |
Msa0030790 | AT1G77100.1 | 38.365 | 318 | 186 | 6 | 17 | 326 | 4 | 319 | 1.90e-72 | 227 |
Msa0030790 | AT4G26010.1 | 40.206 | 291 | 169 | 4 | 38 | 326 | 22 | 309 | 2.29e-72 | 226 |
Msa0030790 | AT5G40150.1 | 41.967 | 305 | 169 | 5 | 30 | 326 | 24 | 328 | 3.15e-72 | 227 |
Msa0030790 | AT4G26010.2 | 38.272 | 324 | 187 | 5 | 5 | 326 | 25 | 337 | 3.23e-72 | 227 |
Msa0030790 | AT4G17690.1 | 41.414 | 297 | 166 | 4 | 38 | 326 | 26 | 322 | 1.04e-71 | 225 |
Msa0030790 | AT2G24800.1 | 40.066 | 302 | 165 | 5 | 38 | 326 | 31 | 329 | 1.29e-71 | 225 |
Msa0030790 | AT2G41480.1 | 41.254 | 303 | 161 | 6 | 38 | 326 | 29 | 328 | 2.02e-71 | 224 |
Msa0030790 | AT1G14550.1 | 39.264 | 326 | 182 | 7 | 8 | 326 | 5 | 321 | 5.63e-71 | 223 |
Msa0030790 | AT1G14540.1 | 41.554 | 296 | 165 | 6 | 38 | 326 | 21 | 315 | 8.90e-71 | 223 |
Msa0030790 | AT4G31760.1 | 37.874 | 301 | 172 | 4 | 38 | 326 | 29 | 326 | 2.13e-69 | 219 |
Msa0030790 | AT4G33870.1 | 36.145 | 332 | 167 | 4 | 38 | 324 | 68 | 399 | 2.38e-68 | 219 |
Msa0030790 | AT2G38380.1 | 40.789 | 304 | 164 | 8 | 38 | 326 | 31 | 333 | 2.45e-68 | 218 |
Msa0030790 | AT5G47000.1 | 40.940 | 298 | 167 | 5 | 38 | 326 | 33 | 330 | 3.46e-68 | 216 |
Msa0030790 | AT4G08770.1 | 40.789 | 304 | 165 | 6 | 38 | 326 | 24 | 327 | 8.36e-68 | 216 |
Msa0030790 | AT4G08780.1 | 40.461 | 304 | 166 | 6 | 38 | 326 | 24 | 327 | 1.08e-67 | 216 |
Msa0030790 | AT1G34510.1 | 36.760 | 321 | 188 | 6 | 9 | 326 | 1 | 309 | 6.73e-67 | 213 |
Msa0030790 | AT2G39040.1 | 39.423 | 312 | 167 | 8 | 34 | 326 | 42 | 350 | 8.06e-67 | 213 |
Msa0030790 | AT5G14130.1 | 38.870 | 301 | 170 | 6 | 38 | 326 | 32 | 330 | 2.85e-66 | 211 |
Msa0030790 | AT5G14130.2 | 38.870 | 301 | 170 | 6 | 38 | 326 | 73 | 371 | 3.79e-66 | 213 |
Msa0030790 | AT4G25980.1 | 37.188 | 320 | 184 | 7 | 21 | 326 | 10 | 326 | 4.59e-66 | 211 |
Msa0030790 | AT2G38390.1 | 39.145 | 304 | 169 | 8 | 38 | 326 | 31 | 333 | 2.27e-65 | 210 |
Msa0030790 | AT2G18980.1 | 36.760 | 321 | 185 | 6 | 20 | 326 | 7 | 323 | 2.90e-65 | 209 |
Msa0030790 | AT3G49110.1 | 39.474 | 304 | 169 | 6 | 38 | 326 | 33 | 336 | 2.12e-64 | 207 |
Msa0030790 | AT3G49120.1 | 39.474 | 304 | 169 | 6 | 38 | 326 | 32 | 335 | 3.53e-64 | 207 |
Msa0030790 | AT2G34060.1 | 39.073 | 302 | 168 | 8 | 38 | 323 | 42 | 343 | 3.77e-64 | 206 |
Msa0030790 | AT3G32980.1 | 39.344 | 305 | 168 | 7 | 38 | 326 | 31 | 334 | 9.38e-63 | 203 |
Msa0030790 | AT5G64100.1 | 36.308 | 325 | 189 | 6 | 16 | 326 | 11 | 331 | 1.27e-62 | 202 |
Msa0030790 | AT4G37530.1 | 36.304 | 303 | 179 | 5 | 38 | 326 | 27 | 329 | 4.74e-62 | 201 |
Msa0030790 | AT4G37520.1 | 36.304 | 303 | 179 | 5 | 38 | 326 | 27 | 329 | 5.63e-62 | 200 |
Msa0030790 | AT1G30870.1 | 37.584 | 298 | 174 | 4 | 38 | 326 | 51 | 345 | 8.53e-61 | 198 |
Msa0030790 | AT3G49960.1 | 37.294 | 303 | 176 | 6 | 38 | 326 | 27 | 329 | 3.09e-60 | 196 |
Msa0030790 | AT5G22410.1 | 37.539 | 317 | 179 | 8 | 21 | 323 | 11 | 322 | 3.38e-60 | 196 |
Msa0030790 | AT4G37520.2 | 35.974 | 303 | 177 | 6 | 38 | 326 | 27 | 326 | 7.57e-60 | 195 |
Msa0030790 | AT5G67400.1 | 35.258 | 329 | 194 | 6 | 17 | 326 | 1 | 329 | 8.67e-60 | 195 |
Msa0030790 | AT4G30170.1 | 34.983 | 303 | 179 | 6 | 38 | 326 | 27 | 325 | 6.71e-59 | 192 |
Msa0030790 | AT5G64110.1 | 37.710 | 297 | 169 | 7 | 42 | 326 | 38 | 330 | 2.16e-58 | 191 |
Msa0030790 | AT1G24110.1 | 36.877 | 301 | 178 | 6 | 38 | 326 | 22 | 322 | 6.29e-56 | 185 |
Msa0030790 | AT3G17070.1 | 34.983 | 303 | 184 | 4 | 37 | 326 | 37 | 339 | 5.59e-55 | 182 |
Msa0030790 | AT2G35380.2 | 42.915 | 247 | 120 | 7 | 99 | 326 | 3 | 247 | 2.73e-54 | 178 |
Msa0030790 | AT4G21960.1 | 33.557 | 298 | 190 | 3 | 37 | 326 | 30 | 327 | 2.28e-53 | 178 |
Msa0030790 | AT5G24070.1 | 34.426 | 305 | 180 | 5 | 38 | 326 | 35 | 335 | 8.31e-53 | 177 |
Msa0030790 | AT2G43480.1 | 33.115 | 305 | 184 | 5 | 38 | 326 | 35 | 335 | 1.05e-50 | 171 |
Msa0030790 | AT4G37530.2 | 37.154 | 253 | 145 | 5 | 38 | 276 | 27 | 279 | 1.16e-50 | 170 |
Msa0030790 | AT2G37130.1 | 32.131 | 305 | 197 | 5 | 32 | 326 | 23 | 327 | 4.74e-49 | 167 |
Msa0030790 | AT2G37130.2 | 31.757 | 296 | 193 | 4 | 40 | 326 | 1 | 296 | 7.54e-48 | 163 |
Msa0030790 | AT5G39580.2 | 40.625 | 192 | 110 | 2 | 13 | 204 | 1 | 188 | 4.68e-47 | 159 |
Msa0030790 | AT4G25980.2 | 41.436 | 181 | 103 | 2 | 23 | 203 | 57 | 234 | 1.26e-46 | 159 |
Msa0030790 | AT2G24800.2 | 45.455 | 165 | 86 | 2 | 38 | 201 | 31 | 192 | 1.19e-44 | 153 |
Msa0030790 | AT3G17070.2 | 31.752 | 274 | 173 | 5 | 66 | 326 | 4 | 276 | 3.80e-39 | 139 |
Msa0030790 | AT4G32320.1 | 28.467 | 274 | 127 | 10 | 50 | 305 | 97 | 319 | 8.12e-17 | 80.5 |
Msa0030790 | AT1G77490.2 | 29.344 | 259 | 142 | 11 | 72 | 311 | 106 | 342 | 7.86e-16 | 78.2 |
Msa0030790 | AT1G77490.1 | 29.344 | 259 | 142 | 11 | 72 | 311 | 106 | 342 | 9.13e-16 | 78.2 |
Msa0030790 | AT4G35970.1 | 29.259 | 270 | 138 | 10 | 50 | 308 | 13 | 240 | 1.25e-14 | 73.6 |
Msa0030790 | AT4G35970.2 | 29.600 | 250 | 123 | 10 | 50 | 288 | 13 | 220 | 4.16e-12 | 65.1 |
Msa0030790 | AT3G42570.1 | 30.556 | 108 | 71 | 2 | 99 | 203 | 43 | 149 | 1.59e-11 | 62.0 |
Find 88 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATCATCTTCAAGGAATTA+AGG | 0.209932 | 1_1:-57266401 | None:intergenic |
CTTCCATCCTTTCTACCTTT+AGG | 0.226072 | 1_1:-57267731 | None:intergenic |
TTCACAATGTTCCTTGTTAT+AGG | 0.269838 | 1_1:-57268204 | None:intergenic |
AAGGGTATTTATATTTATAA+AGG | 0.274203 | 1_1:-57266382 | None:intergenic |
TATACAAGTTCTAAGTTCTT+AGG | 0.280598 | 1_1:+57266336 | Msa0030790:five_prime_UTR |
ATCATCTAAGTCATTGAAAA+TGG | 0.290977 | 1_1:+57266428 | Msa0030790:CDS |
ATTACATGCCAATTTGGATT+TGG | 0.293555 | 1_1:+57266492 | Msa0030790:CDS |
TCACAATGTTCCTTGTTATA+GGG | 0.299314 | 1_1:-57268203 | None:intergenic |
TGCCAATTTGGATTTGGATT+TGG | 0.315888 | 1_1:+57266498 | Msa0030790:CDS |
CCATGGCTTGTTGAAAATCT+AGG | 0.323135 | 1_1:-57268257 | None:intergenic |
CTCCAAATCCAAATCCAAAT+TGG | 0.325664 | 1_1:-57266500 | None:intergenic |
TTATAAAGGAATATAAAGTT+TGG | 0.338616 | 1_1:-57266368 | None:intergenic |
GAGGTGATTACATGCCAATT+TGG | 0.350555 | 1_1:+57266486 | Msa0030790:CDS |
CTATCAAGAACATGTACTTC+TGG | 0.371534 | 1_1:+57268066 | Msa0030790:CDS |
CATCATCTTCAAGGAATTAA+GGG | 0.383692 | 1_1:-57266400 | None:intergenic |
TTCACTATGTCCTTAACAAC+TGG | 0.383944 | 1_1:-57266570 | None:intergenic |
CCTCTCAGGCTCAAATTTGC+TGG | 0.400018 | 1_1:-57267324 | None:intergenic |
TTAACAACTGGTTCAACAAA+AGG | 0.406122 | 1_1:-57266558 | None:intergenic |
TTCTGCTGTATTATCCTTGG+TGG | 0.414172 | 1_1:-57267292 | None:intergenic |
TCAACAAGCCATGGTGAAGA+TGG | 0.422355 | 1_1:+57268266 | Msa0030790:CDS |
TCCGAGCTCATCACGCAGTT+TGG | 0.424446 | 1_1:+57267806 | Msa0030790:CDS |
TGCTCTAAATTGTTTATGTC+GGG | 0.426853 | 1_1:+57268482 | Msa0030790:three_prime_UTR |
CAAGGATAATACAGCAGAAA+AGG | 0.428327 | 1_1:+57267296 | Msa0030790:CDS |
ATGTGCTGATATTCTTGCTA+TGG | 0.434317 | 1_1:+57267407 | Msa0030790:CDS |
CAATTTGGATTTGGATTTGG+AGG | 0.436860 | 1_1:+57266501 | Msa0030790:CDS |
TATATATAGTGGGGAATAGT+TGG | 0.438298 | 1_1:-57266317 | None:intergenic |
CTTTCATGACTGCTTCATAC+AGG | 0.438987 | 1_1:+57266644 | Msa0030790:CDS |
GGACATAGTGAATAGAGCTT+TGG | 0.440304 | 1_1:+57266581 | Msa0030790:CDS |
AAGCCAAGCGGATCCAGCTT+TGG | 0.440334 | 1_1:+57268023 | Msa0030790:CDS |
TTTGTTCACTAGGGATGTGA+TGG | 0.441969 | 1_1:+57267252 | Msa0030790:intron |
CAAGAGATGGTCGCTCTATC+CGG | 0.442185 | 1_1:+57267848 | Msa0030790:CDS |
CTTAGAACTTGTATATATAG+TGG | 0.446801 | 1_1:-57266328 | None:intergenic |
CTTTGGATTCAGAATTTGCC+AGG | 0.451170 | 1_1:+57268040 | Msa0030790:CDS |
ATTTGCTCGTACTTCACCAT+TGG | 0.458895 | 1_1:-57268313 | None:intergenic |
TTGGATTTGGATTTGGAGGA+GGG | 0.459339 | 1_1:+57266505 | Msa0030790:CDS |
TGATTTATACATCATCTTCA+AGG | 0.460824 | 1_1:-57266409 | None:intergenic |
TCGTTCCTAGTTGCATCAAA+TGG | 0.467823 | 1_1:-57268105 | None:intergenic |
CAATGACTTCGTATCCTCTC+AGG | 0.480540 | 1_1:-57267338 | None:intergenic |
CAACAAGCCATGGTGAAGAT+GGG | 0.482582 | 1_1:+57268267 | Msa0030790:CDS |
TTGCTCTAAATTGTTTATGT+CGG | 0.484906 | 1_1:+57268481 | Msa0030790:three_prime_UTR |
TAAGTCATTGAAAATGGTAA+TGG | 0.491999 | 1_1:+57266434 | Msa0030790:CDS |
TAACATACCTAAAGGTAGAA+AGG | 0.492130 | 1_1:+57267724 | Msa0030790:CDS |
TTAGAACTTGTATATATAGT+GGG | 0.492746 | 1_1:-57266327 | None:intergenic |
TAGGGCTAGAGTATAGTGTT+TGG | 0.499317 | 1_1:-57268185 | None:intergenic |
TCTAAATTGTTTATGTCGGG+TGG | 0.501108 | 1_1:+57268485 | Msa0030790:three_prime_UTR |
TTTGGATTTGGATTTGGAGG+AGG | 0.503421 | 1_1:+57266504 | Msa0030790:CDS |
TAAATTGTTTATGTCGGGTG+GGG | 0.505411 | 1_1:+57268487 | Msa0030790:three_prime_UTR |
GCAAATTCTGAATCCAAAGC+TGG | 0.507065 | 1_1:-57268036 | None:intergenic |
CTAAATTGTTTATGTCGGGT+GGG | 0.521989 | 1_1:+57268486 | Msa0030790:three_prime_UTR |
TAACAACTGGTTCAACAAAA+GGG | 0.527365 | 1_1:-57266557 | None:intergenic |
TCAGCACATGAAACCACGCC+AGG | 0.530493 | 1_1:-57267393 | None:intergenic |
GAGCTTGAAAACCGATGCCC+TGG | 0.541064 | 1_1:+57267375 | Msa0030790:CDS |
CCAGTGTATAACATACCTAA+AGG | 0.544678 | 1_1:+57267716 | Msa0030790:CDS |
TTCTTATAAGAGCAGCTGCA+AGG | 0.544991 | 1_1:-57266617 | None:intergenic |
AATCTAGGAAGAACATGGCT+TGG | 0.545440 | 1_1:-57268242 | None:intergenic |
GATATTAAACAAGGTTCCAA+TGG | 0.546015 | 1_1:+57268297 | Msa0030790:CDS |
ATCACGCAGTTTGGTCAACA+TGG | 0.546453 | 1_1:+57267815 | Msa0030790:CDS |
ATACCTAAAGGTAGAAAGGA+TGG | 0.552044 | 1_1:+57267728 | Msa0030790:CDS |
AGCTCGGATGCATTAAAAGA+AGG | 0.555115 | 1_1:-57267791 | None:intergenic |
TTGTTCACTAGGGATGTGAT+GGG | 0.561692 | 1_1:+57267253 | Msa0030790:intron |
TCTTACGTAGAAAACTGCTT+CGG | 0.565409 | 1_1:-57267436 | None:intergenic |
GTTGGCAAAATGCAAGAAAG+TGG | 0.568095 | 1_1:-57266299 | None:intergenic |
TATAAGAGCAGCTGCAAGGG+TGG | 0.568217 | 1_1:-57266613 | None:intergenic |
AATCCAAAGCTGGATCCGCT+TGG | 0.568842 | 1_1:-57268026 | None:intergenic |
TCTTATAAGAGCAGCTGCAA+GGG | 0.569116 | 1_1:-57266616 | None:intergenic |
ACATGTTCTTGATAGTGTCC+TGG | 0.570162 | 1_1:-57268058 | None:intergenic |
ACCAAACTGCGTGATGAGCT+CGG | 0.577150 | 1_1:-57267807 | None:intergenic |
CCAGCAAATTTGAGCCTGAG+AGG | 0.581219 | 1_1:+57267324 | Msa0030790:CDS |
TTGAAAATCTAGGAAGAACA+TGG | 0.583664 | 1_1:-57268247 | None:intergenic |
CCTTTAGGTATGTTATACAC+TGG | 0.588884 | 1_1:-57267716 | None:intergenic |
ATGAAACCACGCCAGGGCAT+CGG | 0.597007 | 1_1:-57267386 | None:intergenic |
GGTTTGCTTGATATTAAACA+AGG | 0.599211 | 1_1:+57268288 | Msa0030790:CDS |
TTTACTTCAACGCTTTGTTG+AGG | 0.600285 | 1_1:+57268139 | Msa0030790:CDS |
TGAAAACCGATGCCCTGGCG+TGG | 0.606785 | 1_1:+57267380 | Msa0030790:CDS |
GATGCATTAAAAGAAGGTGA+TGG | 0.610373 | 1_1:-57267785 | None:intergenic |
ATAAGAGCAGCTGCAAGGGT+GGG | 0.610728 | 1_1:-57266612 | None:intergenic |
TATGCAGGGGCACATACACT+AGG | 0.612698 | 1_1:+57267967 | Msa0030790:intron |
TACGTAGAAAACTGCTTCGG+TGG | 0.619353 | 1_1:-57267433 | None:intergenic |
CACATACACTAGGAGTGGCA+AGG | 0.657351 | 1_1:+57267977 | Msa0030790:CDS |
TATTGAATATTGCAGGCTGG+AGG | 0.657358 | 1_1:+57267692 | Msa0030790:intron |
TATACTCTAGCCCTATAACA+AGG | 0.662454 | 1_1:+57268193 | Msa0030790:CDS |
AACAACCATTTGATGCAACT+AGG | 0.664237 | 1_1:+57268100 | Msa0030790:CDS |
TAGAACTTGTATATATAGTG+GGG | 0.666273 | 1_1:-57266326 | None:intergenic |
CAGCACATGAAACCACGCCA+GGG | 0.671985 | 1_1:-57267392 | None:intergenic |
AGGGGCACATACACTAGGAG+TGG | 0.676546 | 1_1:+57267972 | Msa0030790:intron |
CAAGAACAGATTAAGCCAAG+CGG | 0.684198 | 1_1:+57268011 | Msa0030790:CDS |
AAGCAAACCCATCTTCACCA+TGG | 0.690111 | 1_1:-57268274 | None:intergenic |
AATTCTGCTTGATTCCACCA+AGG | 0.709302 | 1_1:+57267278 | Msa0030790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTGTTTATAATTACAAA+CGG | - | chr1_1:57267897-57267916 | None:intergenic | 10.0% |
!!! | TTTTTGTTTATAATTACAAA+CGG | - | chr1_1:57267897-57267916 | None:intergenic | 10.0% |
!! | TTATAAAGGAATATAAAGTT+TGG | - | chr1_1:57266371-57266390 | None:intergenic | 15.0% |
!!! | AAGGGTATTTATATTTATAA+AGG | - | chr1_1:57266385-57266404 | None:intergenic | 15.0% |
!! | TAACTATATAATGTAGAAAA+TGG | - | chr1_1:57267195-57267214 | None:intergenic | 15.0% |
!! | ATATAATAAACTTGTCTTAA+TGG | + | chr1_1:57267460-57267479 | Msa0030790:intron | 15.0% |
!! | ATGATTGATTGATATAAAAT+TGG | + | chr1_1:57267633-57267652 | Msa0030790:intron | 15.0% |
!! | TGAATTATATATTATATGCA+GGG | + | chr1_1:57267953-57267972 | Msa0030790:intron | 15.0% |
!!! | AAAATGATTAGTTAATTTTG+CGG | - | chr1_1:57268341-57268360 | None:intergenic | 15.0% |
!!! | ATTAACTAATCATTTTGTTA+TGG | + | chr1_1:57268345-57268364 | Msa0030790:exon | 15.0% |
!! | TTATAAAGGAATATAAAGTT+TGG | - | chr1_1:57266371-57266390 | None:intergenic | 15.0% |
!!! | AAGGGTATTTATATTTATAA+AGG | - | chr1_1:57266385-57266404 | None:intergenic | 15.0% |
!! | TAACTATATAATGTAGAAAA+TGG | - | chr1_1:57267195-57267214 | None:intergenic | 15.0% |
!! | ATATAATAAACTTGTCTTAA+TGG | + | chr1_1:57267460-57267479 | Msa0030790:intron | 15.0% |
!! | ATGATTGATTGATATAAAAT+TGG | + | chr1_1:57267633-57267652 | Msa0030790:intron | 15.0% |
!! | TGAATTATATATTATATGCA+GGG | + | chr1_1:57267953-57267972 | Msa0030790:intron | 15.0% |
!!! | AAAATGATTAGTTAATTTTG+CGG | - | chr1_1:57268341-57268360 | None:intergenic | 15.0% |
!!! | ATTAACTAATCATTTTGTTA+TGG | + | chr1_1:57268345-57268364 | Msa0030790:exon | 15.0% |
!! | TTAGAACTTGTATATATAGT+GGG | - | chr1_1:57266330-57266349 | None:intergenic | 20.0% |
!! | ATAAAACATTAATTTCCAAG+TGG | - | chr1_1:57266768-57266787 | None:intergenic | 20.0% |
!!! | CTGATACAATCTTATAATTT+TGG | + | chr1_1:57266829-57266848 | Msa0030790:intron | 20.0% |
!!! | CAATCTTATAATTTTGGATT+AGG | + | chr1_1:57266835-57266854 | Msa0030790:intron | 20.0% |
!!! | TTTGTTTATTTTTGTTCACT+AGG | + | chr1_1:57267242-57267261 | Msa0030790:intron | 20.0% |
!!! | TTGTTTATTTTTGTTCACTA+GGG | + | chr1_1:57267243-57267262 | Msa0030790:intron | 20.0% |
!! | ATGAAACTCTACATATTTAT+AGG | - | chr1_1:57267505-57267524 | None:intergenic | 20.0% |
!! | AATGAAATATTGAATATTGC+AGG | + | chr1_1:57267685-57267704 | Msa0030790:intron | 20.0% |
!! | CTGCATATAATATATAATTC+AGG | - | chr1_1:57267954-57267973 | None:intergenic | 20.0% |
!! | CTGAATTATATATTATATGC+AGG | + | chr1_1:57267952-57267971 | Msa0030790:intron | 20.0% |
!! | GAATTATATATTATATGCAG+GGG | + | chr1_1:57267954-57267973 | Msa0030790:intron | 20.0% |
!! | TTAGAACTTGTATATATAGT+GGG | - | chr1_1:57266330-57266349 | None:intergenic | 20.0% |
!! | ATAAAACATTAATTTCCAAG+TGG | - | chr1_1:57266768-57266787 | None:intergenic | 20.0% |
!!! | CTGATACAATCTTATAATTT+TGG | + | chr1_1:57266829-57266848 | Msa0030790:intron | 20.0% |
!!! | CAATCTTATAATTTTGGATT+AGG | + | chr1_1:57266835-57266854 | Msa0030790:intron | 20.0% |
!!! | TTTGTTTATTTTTGTTCACT+AGG | + | chr1_1:57267242-57267261 | Msa0030790:intron | 20.0% |
!!! | TTGTTTATTTTTGTTCACTA+GGG | + | chr1_1:57267243-57267262 | Msa0030790:intron | 20.0% |
!! | ATGAAACTCTACATATTTAT+AGG | - | chr1_1:57267505-57267524 | None:intergenic | 20.0% |
!! | AATGAAATATTGAATATTGC+AGG | + | chr1_1:57267685-57267704 | Msa0030790:intron | 20.0% |
!! | CTGCATATAATATATAATTC+AGG | - | chr1_1:57267954-57267973 | None:intergenic | 20.0% |
!! | CTGAATTATATATTATATGC+AGG | + | chr1_1:57267952-57267971 | Msa0030790:intron | 20.0% |
!! | GAATTATATATTATATGCAG+GGG | + | chr1_1:57267954-57267973 | Msa0030790:intron | 20.0% |
! | TAGAACTTGTATATATAGTG+GGG | - | chr1_1:57266329-57266348 | None:intergenic | 25.0% |
! | CTTAGAACTTGTATATATAG+TGG | - | chr1_1:57266331-57266350 | None:intergenic | 25.0% |
!!! | TATACAAGTTCTAAGTTCTT+AGG | + | chr1_1:57266336-57266355 | Msa0030790:five_prime_UTR | 25.0% |
! | TGATTTATACATCATCTTCA+AGG | - | chr1_1:57266412-57266431 | None:intergenic | 25.0% |
! | ATCATCTAAGTCATTGAAAA+TGG | + | chr1_1:57266428-57266447 | Msa0030790:CDS | 25.0% |
! | TAAGTCATTGAAAATGGTAA+TGG | + | chr1_1:57266434-57266453 | Msa0030790:CDS | 25.0% |
!!! | GACATTTTTTATGCTAATAG+AGG | + | chr1_1:57266467-57266486 | Msa0030790:CDS | 25.0% |
!!! | CTTTACAAAACGGTTTTATT+AGG | - | chr1_1:57266868-57266887 | None:intergenic | 25.0% |
! | CTAATCTTCACTTTACAAAA+CGG | - | chr1_1:57266878-57266897 | None:intergenic | 25.0% |
! | TATAGTTAGTATGTTGTTAC+CGG | - | chr1_1:57267870-57267889 | None:intergenic | 25.0% |
!!! | AAAGTTGATGTATTATATCG+AGG | + | chr1_1:57267927-57267946 | Msa0030790:intron | 25.0% |
!! | TTGCTCTAAATTGTTTATGT+CGG | + | chr1_1:57268481-57268500 | Msa0030790:three_prime_UTR | 25.0% |
! | TAGAACTTGTATATATAGTG+GGG | - | chr1_1:57266329-57266348 | None:intergenic | 25.0% |
! | CTTAGAACTTGTATATATAG+TGG | - | chr1_1:57266331-57266350 | None:intergenic | 25.0% |
!!! | TATACAAGTTCTAAGTTCTT+AGG | + | chr1_1:57266336-57266355 | Msa0030790:five_prime_UTR | 25.0% |
! | TGATTTATACATCATCTTCA+AGG | - | chr1_1:57266412-57266431 | None:intergenic | 25.0% |
! | ATCATCTAAGTCATTGAAAA+TGG | + | chr1_1:57266428-57266447 | Msa0030790:CDS | 25.0% |
! | TAAGTCATTGAAAATGGTAA+TGG | + | chr1_1:57266434-57266453 | Msa0030790:CDS | 25.0% |
!!! | GACATTTTTTATGCTAATAG+AGG | + | chr1_1:57266467-57266486 | Msa0030790:CDS | 25.0% |
!!! | CTTTACAAAACGGTTTTATT+AGG | - | chr1_1:57266868-57266887 | None:intergenic | 25.0% |
! | CTAATCTTCACTTTACAAAA+CGG | - | chr1_1:57266878-57266897 | None:intergenic | 25.0% |
! | TATAGTTAGTATGTTGTTAC+CGG | - | chr1_1:57267870-57267889 | None:intergenic | 25.0% |
!!! | AAAGTTGATGTATTATATCG+AGG | + | chr1_1:57267927-57267946 | Msa0030790:intron | 25.0% |
!! | TTGCTCTAAATTGTTTATGT+CGG | + | chr1_1:57268481-57268500 | Msa0030790:three_prime_UTR | 25.0% |
! | TATATATAGTGGGGAATAGT+TGG | - | chr1_1:57266320-57266339 | None:intergenic | 30.0% |
CATCATCTTCAAGGAATTAA+GGG | - | chr1_1:57266403-57266422 | None:intergenic | 30.0% | |
ACATCATCTTCAAGGAATTA+AGG | - | chr1_1:57266404-57266423 | None:intergenic | 30.0% | |
ATTACATGCCAATTTGGATT+TGG | + | chr1_1:57266492-57266511 | Msa0030790:CDS | 30.0% | |
! | TAACAACTGGTTCAACAAAA+GGG | - | chr1_1:57266560-57266579 | None:intergenic | 30.0% |
! | TTAACAACTGGTTCAACAAA+AGG | - | chr1_1:57266561-57266580 | None:intergenic | 30.0% |
! | TTTTGTTGAACCAGTTGTTA+AGG | + | chr1_1:57266560-57266579 | Msa0030790:CDS | 30.0% |
! | CGTTTTGTAAAGTGAAGATT+AGG | + | chr1_1:57266876-57266895 | Msa0030790:intron | 30.0% |
CATACATCAACTACAACTAT+AGG | + | chr1_1:57267141-57267160 | Msa0030790:intron | 30.0% | |
ACATGTCGTTATAGTTAACA+AGG | - | chr1_1:57267565-57267584 | None:intergenic | 30.0% | |
ATGTCTAACAAAAGTCTACT+TGG | + | chr1_1:57267581-57267600 | Msa0030790:intron | 30.0% | |
AAATATTGAATATTGCAGGC+TGG | + | chr1_1:57267689-57267708 | Msa0030790:intron | 30.0% | |
TAACATACCTAAAGGTAGAA+AGG | + | chr1_1:57267724-57267743 | Msa0030790:CDS | 30.0% | |
TGGAAGAAGATCAAAAATAG+AGG | + | chr1_1:57267748-57267767 | Msa0030790:CDS | 30.0% | |
! | TCACAATGTTCCTTGTTATA+GGG | - | chr1_1:57268206-57268225 | None:intergenic | 30.0% |
! | TTCACAATGTTCCTTGTTAT+AGG | - | chr1_1:57268207-57268226 | None:intergenic | 30.0% |
TTGAAAATCTAGGAAGAACA+TGG | - | chr1_1:57268250-57268269 | None:intergenic | 30.0% | |
! | GGTTTGCTTGATATTAAACA+AGG | + | chr1_1:57268288-57268307 | Msa0030790:CDS | 30.0% |
GATATTAAACAAGGTTCCAA+TGG | + | chr1_1:57268297-57268316 | Msa0030790:CDS | 30.0% | |
! | TGCTCTAAATTGTTTATGTC+GGG | + | chr1_1:57268482-57268501 | Msa0030790:three_prime_UTR | 30.0% |
! | TATATATAGTGGGGAATAGT+TGG | - | chr1_1:57266320-57266339 | None:intergenic | 30.0% |
CATCATCTTCAAGGAATTAA+GGG | - | chr1_1:57266403-57266422 | None:intergenic | 30.0% | |
ACATCATCTTCAAGGAATTA+AGG | - | chr1_1:57266404-57266423 | None:intergenic | 30.0% | |
ATTACATGCCAATTTGGATT+TGG | + | chr1_1:57266492-57266511 | Msa0030790:CDS | 30.0% | |
! | TAACAACTGGTTCAACAAAA+GGG | - | chr1_1:57266560-57266579 | None:intergenic | 30.0% |
! | TTAACAACTGGTTCAACAAA+AGG | - | chr1_1:57266561-57266580 | None:intergenic | 30.0% |
! | TTTTGTTGAACCAGTTGTTA+AGG | + | chr1_1:57266560-57266579 | Msa0030790:CDS | 30.0% |
! | CGTTTTGTAAAGTGAAGATT+AGG | + | chr1_1:57266876-57266895 | Msa0030790:intron | 30.0% |
CATACATCAACTACAACTAT+AGG | + | chr1_1:57267141-57267160 | Msa0030790:intron | 30.0% | |
ACATGTCGTTATAGTTAACA+AGG | - | chr1_1:57267565-57267584 | None:intergenic | 30.0% | |
ATGTCTAACAAAAGTCTACT+TGG | + | chr1_1:57267581-57267600 | Msa0030790:intron | 30.0% | |
AAATATTGAATATTGCAGGC+TGG | + | chr1_1:57267689-57267708 | Msa0030790:intron | 30.0% | |
TAACATACCTAAAGGTAGAA+AGG | + | chr1_1:57267724-57267743 | Msa0030790:CDS | 30.0% | |
TGGAAGAAGATCAAAAATAG+AGG | + | chr1_1:57267748-57267767 | Msa0030790:CDS | 30.0% | |
! | TCACAATGTTCCTTGTTATA+GGG | - | chr1_1:57268206-57268225 | None:intergenic | 30.0% |
! | TTCACAATGTTCCTTGTTAT+AGG | - | chr1_1:57268207-57268226 | None:intergenic | 30.0% |
TTGAAAATCTAGGAAGAACA+TGG | - | chr1_1:57268250-57268269 | None:intergenic | 30.0% | |
! | GGTTTGCTTGATATTAAACA+AGG | + | chr1_1:57268288-57268307 | Msa0030790:CDS | 30.0% |
GATATTAAACAAGGTTCCAA+TGG | + | chr1_1:57268297-57268316 | Msa0030790:CDS | 30.0% | |
! | TGCTCTAAATTGTTTATGTC+GGG | + | chr1_1:57268482-57268501 | Msa0030790:three_prime_UTR | 30.0% |
TGCCAATTTGGATTTGGATT+TGG | + | chr1_1:57266498-57266517 | Msa0030790:CDS | 35.0% | |
CTCCAAATCCAAATCCAAAT+TGG | - | chr1_1:57266503-57266522 | None:intergenic | 35.0% | |
CAATTTGGATTTGGATTTGG+AGG | + | chr1_1:57266501-57266520 | Msa0030790:CDS | 35.0% | |
TTCACTATGTCCTTAACAAC+TGG | - | chr1_1:57266573-57266592 | None:intergenic | 35.0% | |
CTAGAATGTAGAGAGAGAAA+GGG | - | chr1_1:57266686-57266705 | None:intergenic | 35.0% | |
!!! | AGGTCTGCACTTTTTTTTTG+TGG | + | chr1_1:57266896-57266915 | Msa0030790:intron | 35.0% |
!!! | CTTTTTTTTTGTGGTGTCCA+AGG | + | chr1_1:57266905-57266924 | Msa0030790:intron | 35.0% |
AAAAATGTCCACCGTTTATG+TGG | + | chr1_1:57267100-57267119 | Msa0030790:intron | 35.0% | |
! | CTTTTCTGCTGTATTATCCT+TGG | - | chr1_1:57267298-57267317 | None:intergenic | 35.0% |
CAAGGATAATACAGCAGAAA+AGG | + | chr1_1:57267296-57267315 | Msa0030790:CDS | 35.0% | |
! | ATGTGCTGATATTCTTGCTA+TGG | + | chr1_1:57267407-57267426 | Msa0030790:CDS | 35.0% |
TCTTACGTAGAAAACTGCTT+CGG | - | chr1_1:57267439-57267458 | None:intergenic | 35.0% | |
CCTTTAGGTATGTTATACAC+TGG | - | chr1_1:57267719-57267738 | None:intergenic | 35.0% | |
CCAGTGTATAACATACCTAA+AGG | + | chr1_1:57267716-57267735 | Msa0030790:CDS | 35.0% | |
ATACCTAAAGGTAGAAAGGA+TGG | + | chr1_1:57267728-57267747 | Msa0030790:CDS | 35.0% | |
GATGCATTAAAAGAAGGTGA+TGG | - | chr1_1:57267788-57267807 | None:intergenic | 35.0% | |
CTATCAAGAACATGTACTTC+TGG | + | chr1_1:57268066-57268085 | Msa0030790:CDS | 35.0% | |
AACAACCATTTGATGCAACT+AGG | + | chr1_1:57268100-57268119 | Msa0030790:CDS | 35.0% | |
! | TTTACTTCAACGCTTTGTTG+AGG | + | chr1_1:57268139-57268158 | Msa0030790:CDS | 35.0% |
! | AACGCTTTGTTGAGGAAAAA+TGG | + | chr1_1:57268147-57268166 | Msa0030790:CDS | 35.0% |
TATACTCTAGCCCTATAACA+AGG | + | chr1_1:57268193-57268212 | Msa0030790:CDS | 35.0% | |
TCTAAATTGTTTATGTCGGG+TGG | + | chr1_1:57268485-57268504 | Msa0030790:three_prime_UTR | 35.0% | |
CTAAATTGTTTATGTCGGGT+GGG | + | chr1_1:57268486-57268505 | Msa0030790:three_prime_UTR | 35.0% | |
TAAATTGTTTATGTCGGGTG+GGG | + | chr1_1:57268487-57268506 | Msa0030790:three_prime_UTR | 35.0% | |
TGCCAATTTGGATTTGGATT+TGG | + | chr1_1:57266498-57266517 | Msa0030790:CDS | 35.0% | |
CTCCAAATCCAAATCCAAAT+TGG | - | chr1_1:57266503-57266522 | None:intergenic | 35.0% | |
CAATTTGGATTTGGATTTGG+AGG | + | chr1_1:57266501-57266520 | Msa0030790:CDS | 35.0% | |
TTCACTATGTCCTTAACAAC+TGG | - | chr1_1:57266573-57266592 | None:intergenic | 35.0% | |
CTAGAATGTAGAGAGAGAAA+GGG | - | chr1_1:57266686-57266705 | None:intergenic | 35.0% | |
!!! | AGGTCTGCACTTTTTTTTTG+TGG | + | chr1_1:57266896-57266915 | Msa0030790:intron | 35.0% |
!!! | CTTTTTTTTTGTGGTGTCCA+AGG | + | chr1_1:57266905-57266924 | Msa0030790:intron | 35.0% |
AAAAATGTCCACCGTTTATG+TGG | + | chr1_1:57267100-57267119 | Msa0030790:intron | 35.0% | |
! | CTTTTCTGCTGTATTATCCT+TGG | - | chr1_1:57267298-57267317 | None:intergenic | 35.0% |
CAAGGATAATACAGCAGAAA+AGG | + | chr1_1:57267296-57267315 | Msa0030790:CDS | 35.0% | |
! | ATGTGCTGATATTCTTGCTA+TGG | + | chr1_1:57267407-57267426 | Msa0030790:CDS | 35.0% |
TCTTACGTAGAAAACTGCTT+CGG | - | chr1_1:57267439-57267458 | None:intergenic | 35.0% | |
CCTTTAGGTATGTTATACAC+TGG | - | chr1_1:57267719-57267738 | None:intergenic | 35.0% | |
CCAGTGTATAACATACCTAA+AGG | + | chr1_1:57267716-57267735 | Msa0030790:CDS | 35.0% | |
ATACCTAAAGGTAGAAAGGA+TGG | + | chr1_1:57267728-57267747 | Msa0030790:CDS | 35.0% | |
GATGCATTAAAAGAAGGTGA+TGG | - | chr1_1:57267788-57267807 | None:intergenic | 35.0% | |
CTATCAAGAACATGTACTTC+TGG | + | chr1_1:57268066-57268085 | Msa0030790:CDS | 35.0% | |
AACAACCATTTGATGCAACT+AGG | + | chr1_1:57268100-57268119 | Msa0030790:CDS | 35.0% | |
! | TTTACTTCAACGCTTTGTTG+AGG | + | chr1_1:57268139-57268158 | Msa0030790:CDS | 35.0% |
! | AACGCTTTGTTGAGGAAAAA+TGG | + | chr1_1:57268147-57268166 | Msa0030790:CDS | 35.0% |
TATACTCTAGCCCTATAACA+AGG | + | chr1_1:57268193-57268212 | Msa0030790:CDS | 35.0% | |
TCTAAATTGTTTATGTCGGG+TGG | + | chr1_1:57268485-57268504 | Msa0030790:three_prime_UTR | 35.0% | |
CTAAATTGTTTATGTCGGGT+GGG | + | chr1_1:57268486-57268505 | Msa0030790:three_prime_UTR | 35.0% | |
TAAATTGTTTATGTCGGGTG+GGG | + | chr1_1:57268487-57268506 | Msa0030790:three_prime_UTR | 35.0% | |
GTTGGCAAAATGCAAGAAAG+TGG | - | chr1_1:57266302-57266321 | None:intergenic | 40.0% | |
GAGGTGATTACATGCCAATT+TGG | + | chr1_1:57266486-57266505 | Msa0030790:CDS | 40.0% | |
TTTGGATTTGGATTTGGAGG+AGG | + | chr1_1:57266504-57266523 | Msa0030790:CDS | 40.0% | |
TTGGATTTGGATTTGGAGGA+GGG | + | chr1_1:57266505-57266524 | Msa0030790:CDS | 40.0% | |
GGACATAGTGAATAGAGCTT+TGG | + | chr1_1:57266581-57266600 | Msa0030790:CDS | 40.0% | |
TCTTATAAGAGCAGCTGCAA+GGG | - | chr1_1:57266619-57266638 | None:intergenic | 40.0% | |
TTCTTATAAGAGCAGCTGCA+AGG | - | chr1_1:57266620-57266639 | None:intergenic | 40.0% | |
CTTTCATGACTGCTTCATAC+AGG | + | chr1_1:57266644-57266663 | Msa0030790:CDS | 40.0% | |
GCTAGAATGTAGAGAGAGAA+AGG | - | chr1_1:57266687-57266706 | None:intergenic | 40.0% | |
CATAACATATGCAAAGTCCG+AGG | - | chr1_1:57266937-57266956 | None:intergenic | 40.0% | |
ATTGCACGACACCACATAAA+CGG | - | chr1_1:57267114-57267133 | None:intergenic | 40.0% | |
TTTGTTCACTAGGGATGTGA+TGG | + | chr1_1:57267252-57267271 | Msa0030790:intron | 40.0% | |
TTGTTCACTAGGGATGTGAT+GGG | + | chr1_1:57267253-57267272 | Msa0030790:intron | 40.0% | |
AATTCTGCTTGATTCCACCA+AGG | + | chr1_1:57267278-57267297 | Msa0030790:CDS | 40.0% | |
TTCTGCTGTATTATCCTTGG+TGG | - | chr1_1:57267295-57267314 | None:intergenic | 40.0% | |
TATTGAATATTGCAGGCTGG+AGG | + | chr1_1:57267692-57267711 | Msa0030790:intron | 40.0% | |
CTTCCATCCTTTCTACCTTT+AGG | - | chr1_1:57267734-57267753 | None:intergenic | 40.0% | |
AGCTCGGATGCATTAAAAGA+AGG | - | chr1_1:57267794-57267813 | None:intergenic | 40.0% | |
! | TGGTTTTTCTGCACAAGAGA+TGG | + | chr1_1:57267835-57267854 | Msa0030790:CDS | 40.0% |
CAAGAACAGATTAAGCCAAG+CGG | + | chr1_1:57268011-57268030 | Msa0030790:CDS | 40.0% | |
GCAAATTCTGAATCCAAAGC+TGG | - | chr1_1:57268039-57268058 | None:intergenic | 40.0% | |
CTTTGGATTCAGAATTTGCC+AGG | + | chr1_1:57268040-57268059 | Msa0030790:CDS | 40.0% | |
!! | ACATGTTCTTGATAGTGTCC+TGG | - | chr1_1:57268061-57268080 | None:intergenic | 40.0% |
TCGTTCCTAGTTGCATCAAA+TGG | - | chr1_1:57268108-57268127 | None:intergenic | 40.0% | |
TAGGGCTAGAGTATAGTGTT+TGG | - | chr1_1:57268188-57268207 | None:intergenic | 40.0% | |
AATCTAGGAAGAACATGGCT+TGG | - | chr1_1:57268245-57268264 | None:intergenic | 40.0% | |
!! | CCATGGCTTGTTGAAAATCT+AGG | - | chr1_1:57268260-57268279 | None:intergenic | 40.0% |
! | CCTAGATTTTCAACAAGCCA+TGG | + | chr1_1:57268257-57268276 | Msa0030790:CDS | 40.0% |
ATTTGCTCGTACTTCACCAT+TGG | - | chr1_1:57268316-57268335 | None:intergenic | 40.0% | |
GTTGGCAAAATGCAAGAAAG+TGG | - | chr1_1:57266302-57266321 | None:intergenic | 40.0% | |
GAGGTGATTACATGCCAATT+TGG | + | chr1_1:57266486-57266505 | Msa0030790:CDS | 40.0% | |
TTTGGATTTGGATTTGGAGG+AGG | + | chr1_1:57266504-57266523 | Msa0030790:CDS | 40.0% | |
TTGGATTTGGATTTGGAGGA+GGG | + | chr1_1:57266505-57266524 | Msa0030790:CDS | 40.0% | |
GGACATAGTGAATAGAGCTT+TGG | + | chr1_1:57266581-57266600 | Msa0030790:CDS | 40.0% | |
TCTTATAAGAGCAGCTGCAA+GGG | - | chr1_1:57266619-57266638 | None:intergenic | 40.0% | |
TTCTTATAAGAGCAGCTGCA+AGG | - | chr1_1:57266620-57266639 | None:intergenic | 40.0% | |
CTTTCATGACTGCTTCATAC+AGG | + | chr1_1:57266644-57266663 | Msa0030790:CDS | 40.0% | |
GCTAGAATGTAGAGAGAGAA+AGG | - | chr1_1:57266687-57266706 | None:intergenic | 40.0% | |
CATAACATATGCAAAGTCCG+AGG | - | chr1_1:57266937-57266956 | None:intergenic | 40.0% | |
ATTGCACGACACCACATAAA+CGG | - | chr1_1:57267114-57267133 | None:intergenic | 40.0% | |
TTTGTTCACTAGGGATGTGA+TGG | + | chr1_1:57267252-57267271 | Msa0030790:intron | 40.0% | |
TTGTTCACTAGGGATGTGAT+GGG | + | chr1_1:57267253-57267272 | Msa0030790:intron | 40.0% | |
AATTCTGCTTGATTCCACCA+AGG | + | chr1_1:57267278-57267297 | Msa0030790:CDS | 40.0% | |
TTCTGCTGTATTATCCTTGG+TGG | - | chr1_1:57267295-57267314 | None:intergenic | 40.0% | |
TATTGAATATTGCAGGCTGG+AGG | + | chr1_1:57267692-57267711 | Msa0030790:intron | 40.0% | |
CTTCCATCCTTTCTACCTTT+AGG | - | chr1_1:57267734-57267753 | None:intergenic | 40.0% | |
AGCTCGGATGCATTAAAAGA+AGG | - | chr1_1:57267794-57267813 | None:intergenic | 40.0% | |
! | TGGTTTTTCTGCACAAGAGA+TGG | + | chr1_1:57267835-57267854 | Msa0030790:CDS | 40.0% |
CAAGAACAGATTAAGCCAAG+CGG | + | chr1_1:57268011-57268030 | Msa0030790:CDS | 40.0% | |
GCAAATTCTGAATCCAAAGC+TGG | - | chr1_1:57268039-57268058 | None:intergenic | 40.0% | |
CTTTGGATTCAGAATTTGCC+AGG | + | chr1_1:57268040-57268059 | Msa0030790:CDS | 40.0% | |
!! | ACATGTTCTTGATAGTGTCC+TGG | - | chr1_1:57268061-57268080 | None:intergenic | 40.0% |
TCGTTCCTAGTTGCATCAAA+TGG | - | chr1_1:57268108-57268127 | None:intergenic | 40.0% | |
TAGGGCTAGAGTATAGTGTT+TGG | - | chr1_1:57268188-57268207 | None:intergenic | 40.0% | |
AATCTAGGAAGAACATGGCT+TGG | - | chr1_1:57268245-57268264 | None:intergenic | 40.0% | |
!! | CCATGGCTTGTTGAAAATCT+AGG | - | chr1_1:57268260-57268279 | None:intergenic | 40.0% |
! | CCTAGATTTTCAACAAGCCA+TGG | + | chr1_1:57268257-57268276 | Msa0030790:CDS | 40.0% |
ATTTGCTCGTACTTCACCAT+TGG | - | chr1_1:57268316-57268335 | None:intergenic | 40.0% | |
TAGAGAGAGAAAGGGAGAGA+AGG | - | chr1_1:57266678-57266697 | None:intergenic | 45.0% | |
GCATGAGACACTCAAACACA+TGG | + | chr1_1:57266705-57266724 | Msa0030790:intron | 45.0% | |
TGAGACACTCAAACACATGG+TGG | + | chr1_1:57266708-57266727 | Msa0030790:intron | 45.0% | |
ATGTTGCATGCGTACATGCA+TGG | + | chr1_1:57266741-57266760 | Msa0030790:intron | 45.0% | |
CAATGACTTCGTATCCTCTC+AGG | - | chr1_1:57267341-57267360 | None:intergenic | 45.0% | |
TACGTAGAAAACTGCTTCGG+TGG | - | chr1_1:57267436-57267455 | None:intergenic | 45.0% | |
ATCACGCAGTTTGGTCAACA+TGG | + | chr1_1:57267815-57267834 | Msa0030790:CDS | 45.0% | |
TCAACAAGCCATGGTGAAGA+TGG | + | chr1_1:57268266-57268285 | Msa0030790:CDS | 45.0% | |
CAACAAGCCATGGTGAAGAT+GGG | + | chr1_1:57268267-57268286 | Msa0030790:CDS | 45.0% | |
AAGCAAACCCATCTTCACCA+TGG | - | chr1_1:57268277-57268296 | None:intergenic | 45.0% | |
TAGAGAGAGAAAGGGAGAGA+AGG | - | chr1_1:57266678-57266697 | None:intergenic | 45.0% | |
GCATGAGACACTCAAACACA+TGG | + | chr1_1:57266705-57266724 | Msa0030790:intron | 45.0% | |
TGAGACACTCAAACACATGG+TGG | + | chr1_1:57266708-57266727 | Msa0030790:intron | 45.0% | |
ATGTTGCATGCGTACATGCA+TGG | + | chr1_1:57266741-57266760 | Msa0030790:intron | 45.0% | |
CAATGACTTCGTATCCTCTC+AGG | - | chr1_1:57267341-57267360 | None:intergenic | 45.0% | |
TACGTAGAAAACTGCTTCGG+TGG | - | chr1_1:57267436-57267455 | None:intergenic | 45.0% | |
ATCACGCAGTTTGGTCAACA+TGG | + | chr1_1:57267815-57267834 | Msa0030790:CDS | 45.0% | |
TCAACAAGCCATGGTGAAGA+TGG | + | chr1_1:57268266-57268285 | Msa0030790:CDS | 45.0% | |
CAACAAGCCATGGTGAAGAT+GGG | + | chr1_1:57268267-57268286 | Msa0030790:CDS | 45.0% | |
AAGCAAACCCATCTTCACCA+TGG | - | chr1_1:57268277-57268296 | None:intergenic | 45.0% | |
ATAAGAGCAGCTGCAAGGGT+GGG | - | chr1_1:57266615-57266634 | None:intergenic | 50.0% | |
TATAAGAGCAGCTGCAAGGG+TGG | - | chr1_1:57266616-57266635 | None:intergenic | 50.0% | |
AAAGTCCGAGGTTCGAACCT+TGG | - | chr1_1:57266925-57266944 | None:intergenic | 50.0% | |
AGCAACCACTGACGTCGTAT+TGG | - | chr1_1:57267063-57267082 | None:intergenic | 50.0% | |
CCTCTCAGGCTCAAATTTGC+TGG | - | chr1_1:57267327-57267346 | None:intergenic | 50.0% | |
CCAGCAAATTTGAGCCTGAG+AGG | + | chr1_1:57267324-57267343 | Msa0030790:CDS | 50.0% | |
ACCAAACTGCGTGATGAGCT+CGG | - | chr1_1:57267810-57267829 | None:intergenic | 50.0% | |
CAAGAGATGGTCGCTCTATC+CGG | + | chr1_1:57267848-57267867 | Msa0030790:CDS | 50.0% | |
! | TATGCAGGGGCACATACACT+AGG | + | chr1_1:57267967-57267986 | Msa0030790:intron | 50.0% |
CACATACACTAGGAGTGGCA+AGG | + | chr1_1:57267977-57267996 | Msa0030790:CDS | 50.0% | |
AATCCAAAGCTGGATCCGCT+TGG | - | chr1_1:57268029-57268048 | None:intergenic | 50.0% | |
ATAAGAGCAGCTGCAAGGGT+GGG | - | chr1_1:57266615-57266634 | None:intergenic | 50.0% | |
TATAAGAGCAGCTGCAAGGG+TGG | - | chr1_1:57266616-57266635 | None:intergenic | 50.0% | |
AAAGTCCGAGGTTCGAACCT+TGG | - | chr1_1:57266925-57266944 | None:intergenic | 50.0% | |
AGCAACCACTGACGTCGTAT+TGG | - | chr1_1:57267063-57267082 | None:intergenic | 50.0% | |
CCTCTCAGGCTCAAATTTGC+TGG | - | chr1_1:57267327-57267346 | None:intergenic | 50.0% | |
CCAGCAAATTTGAGCCTGAG+AGG | + | chr1_1:57267324-57267343 | Msa0030790:CDS | 50.0% | |
ACCAAACTGCGTGATGAGCT+CGG | - | chr1_1:57267810-57267829 | None:intergenic | 50.0% | |
CAAGAGATGGTCGCTCTATC+CGG | + | chr1_1:57267848-57267867 | Msa0030790:CDS | 50.0% | |
! | TATGCAGGGGCACATACACT+AGG | + | chr1_1:57267967-57267986 | Msa0030790:intron | 50.0% |
CACATACACTAGGAGTGGCA+AGG | + | chr1_1:57267977-57267996 | Msa0030790:CDS | 50.0% | |
AATCCAAAGCTGGATCCGCT+TGG | - | chr1_1:57268029-57268048 | None:intergenic | 50.0% | |
GCGTACATGCATGGTCCACT+TGG | + | chr1_1:57266750-57266769 | Msa0030790:intron | 55.0% | |
GGTGTCCAAGGTTCGAACCT+CGG | + | chr1_1:57266917-57266936 | Msa0030790:intron | 55.0% | |
! | CCACTGACGTCGTATTGGCA+TGG | - | chr1_1:57267058-57267077 | None:intergenic | 55.0% |
CCATGCCAATACGACGTCAG+TGG | + | chr1_1:57267055-57267074 | Msa0030790:intron | 55.0% | |
GCACGACACCACATAAACGG+TGG | - | chr1_1:57267111-57267130 | None:intergenic | 55.0% | |
GAGCTTGAAAACCGATGCCC+TGG | + | chr1_1:57267375-57267394 | Msa0030790:CDS | 55.0% | |
ATGAAACCACGCCAGGGCAT+CGG | - | chr1_1:57267389-57267408 | None:intergenic | 55.0% | |
CAGCACATGAAACCACGCCA+GGG | - | chr1_1:57267395-57267414 | None:intergenic | 55.0% | |
TCAGCACATGAAACCACGCC+AGG | - | chr1_1:57267396-57267415 | None:intergenic | 55.0% | |
TCCGAGCTCATCACGCAGTT+TGG | + | chr1_1:57267806-57267825 | Msa0030790:CDS | 55.0% | |
! | AGGGGCACATACACTAGGAG+TGG | + | chr1_1:57267972-57267991 | Msa0030790:intron | 55.0% |
AAGCCAAGCGGATCCAGCTT+TGG | + | chr1_1:57268023-57268042 | Msa0030790:CDS | 55.0% | |
GCGTACATGCATGGTCCACT+TGG | + | chr1_1:57266750-57266769 | Msa0030790:intron | 55.0% | |
GGTGTCCAAGGTTCGAACCT+CGG | + | chr1_1:57266917-57266936 | Msa0030790:intron | 55.0% | |
! | CCACTGACGTCGTATTGGCA+TGG | - | chr1_1:57267058-57267077 | None:intergenic | 55.0% |
CCATGCCAATACGACGTCAG+TGG | + | chr1_1:57267055-57267074 | Msa0030790:intron | 55.0% | |
GCACGACACCACATAAACGG+TGG | - | chr1_1:57267111-57267130 | None:intergenic | 55.0% | |
GAGCTTGAAAACCGATGCCC+TGG | + | chr1_1:57267375-57267394 | Msa0030790:CDS | 55.0% | |
ATGAAACCACGCCAGGGCAT+CGG | - | chr1_1:57267389-57267408 | None:intergenic | 55.0% | |
CAGCACATGAAACCACGCCA+GGG | - | chr1_1:57267395-57267414 | None:intergenic | 55.0% | |
TCAGCACATGAAACCACGCC+AGG | - | chr1_1:57267396-57267415 | None:intergenic | 55.0% | |
TCCGAGCTCATCACGCAGTT+TGG | + | chr1_1:57267806-57267825 | Msa0030790:CDS | 55.0% | |
! | AGGGGCACATACACTAGGAG+TGG | + | chr1_1:57267972-57267991 | Msa0030790:intron | 55.0% |
AAGCCAAGCGGATCCAGCTT+TGG | + | chr1_1:57268023-57268042 | Msa0030790:CDS | 55.0% | |
TGAAAACCGATGCCCTGGCG+TGG | + | chr1_1:57267380-57267399 | Msa0030790:CDS | 60.0% | |
TGAAAACCGATGCCCTGGCG+TGG | + | chr1_1:57267380-57267399 | Msa0030790:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 57266295 | 57268533 | 57266295 | ID=Msa0030790;Name=Msa0030790 |
chr1_1 | mRNA | 57266295 | 57268533 | 57266295 | ID=Msa0030790-mRNA-1;Parent=Msa0030790;Name=Msa0030790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|1|1|1|1|1|4|180|326 |
chr1_1 | exon | 57266295 | 57266665 | 57266295 | ID=Msa0030790-mRNA-1:exon:17249;Parent=Msa0030790-mRNA-1 |
chr1_1 | exon | 57267264 | 57267452 | 57267264 | ID=Msa0030790-mRNA-1:exon:17250;Parent=Msa0030790-mRNA-1 |
chr1_1 | exon | 57267707 | 57267869 | 57267707 | ID=Msa0030790-mRNA-1:exon:17251;Parent=Msa0030790-mRNA-1 |
chr1_1 | exon | 57267974 | 57268533 | 57267974 | ID=Msa0030790-mRNA-1:exon:17252;Parent=Msa0030790-mRNA-1 |
chr1_1 | five_prime_UTR | 57266295 | 57266416 | 57266295 | ID=Msa0030790-mRNA-1:five_prime_utr;Parent=Msa0030790-mRNA-1 |
chr1_1 | CDS | 57266417 | 57266665 | 57266417 | ID=Msa0030790-mRNA-1:cds;Parent=Msa0030790-mRNA-1 |
chr1_1 | CDS | 57267264 | 57267452 | 57267264 | ID=Msa0030790-mRNA-1:cds;Parent=Msa0030790-mRNA-1 |
chr1_1 | CDS | 57267707 | 57267869 | 57267707 | ID=Msa0030790-mRNA-1:cds;Parent=Msa0030790-mRNA-1 |
chr1_1 | CDS | 57267974 | 57268353 | 57267974 | ID=Msa0030790-mRNA-1:cds;Parent=Msa0030790-mRNA-1 |
chr1_1 | three_prime_UTR | 57268354 | 57268533 | 57268354 | ID=Msa0030790-mRNA-1:three_prime_utr;Parent=Msa0030790-mRNA-1 |
Gene Sequence |
Protein sequence |