Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053850 | XP_003588905.1 | 85.714 | 217 | 29 | 2 | 1 | 216 | 24 | 239 | 7.18e-72 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053850 | G7I8Y6 | 85.714 | 217 | 29 | 2 | 1 | 216 | 24 | 239 | 3.43e-72 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005390 | Msa0053850 | 0.976186 | 2.401290e-141 | -8.615850e-47 |
| Msa0030790 | Msa0053850 | 0.817064 | 4.002362e-52 | -8.615850e-47 |
| Msa0053850 | Msa0058230 | 0.862132 | 6.290863e-64 | -8.615850e-47 |
| Msa0053850 | Msa0058370 | 0.862047 | 6.683233e-64 | -8.615850e-47 |
| Msa0053850 | Msa0069350 | 0.818723 | 1.689322e-52 | -8.615850e-47 |
| Msa0053850 | Msa0086250 | 0.801570 | 8.461630e-49 | -8.615850e-47 |
| Msa0053850 | Msa0104570 | 0.812639 | 3.830890e-51 | -8.615850e-47 |
| Msa0053850 | Msa0145850 | 0.818967 | 1.486370e-52 | -8.615850e-47 |
| Msa0053850 | Msa0148310 | 0.801142 | 1.035218e-48 | -8.615850e-47 |
| Msa0053850 | Msa0150590 | 0.803815 | 2.911352e-49 | -8.615850e-47 |
| Msa0053850 | Msa0336430 | 0.800783 | 1.225416e-48 | -8.615850e-47 |
| Msa0053850 | Msa0336520 | 0.809889 | 1.513899e-50 | -8.615850e-47 |
| Msa0053850 | Msa0382530 | 0.804706 | 1.899381e-49 | -8.615850e-47 |
| Msa0053850 | Msa0420680 | 0.832059 | 1.173236e-55 | -8.615850e-47 |
| Msa0053850 | Msa0427820 | 0.841231 | 5.385906e-58 | -8.615850e-47 |
| Msa0053850 | Msa0474060 | 0.840169 | 1.022269e-57 | -8.615850e-47 |
| Msa0053850 | Msa0498610 | 0.801563 | 8.486835e-49 | -8.615850e-47 |
| Msa0053850 | Msa0512520 | 0.826724 | 2.318721e-54 | -8.615850e-47 |
| Msa0053850 | Msa0518680 | 0.852084 | 5.819798e-61 | -8.615850e-47 |
| Msa0053850 | Msa0525210 | 0.803220 | 3.867670e-49 | -8.615850e-47 |
| Msa0053850 | Msa0557850 | 0.829044 | 6.414498e-55 | -8.615850e-47 |
| Msa0053850 | Msa0612520 | 0.805515 | 1.286218e-49 | -8.615850e-47 |
| Msa0053850 | Msa0653160 | 0.809164 | 2.166230e-50 | -8.615850e-47 |
| Msa0053850 | Msa0695560 | 0.834292 | 3.260421e-56 | -8.615850e-47 |
| Msa0053850 | Msa0862170 | 0.810904 | 9.139332e-51 | -8.615850e-47 |
| Msa0053850 | Msa0978980 | 0.820560 | 6.431897e-53 | -8.615850e-47 |
| Msa0053850 | Msa1033420 | 0.806442 | 8.208601e-50 | -8.615850e-47 |
| Msa0053850 | Msa1073060 | 0.805110 | 1.563339e-49 | -8.615850e-47 |
| Msa0053850 | Msa1160780 | 0.827152 | 1.831403e-54 | -8.615850e-47 |
| Msa0053850 | Msa1227760 | 0.801061 | 1.075664e-48 | -8.615850e-47 |
| Msa0053850 | Msa1322600 | 0.820233 | 7.644470e-53 | -8.615850e-47 |
| Msa0053850 | Msa1356220 | 0.816520 | 5.301394e-52 | -8.615850e-47 |
| Msa0053850 | Msa1360930 | 0.819041 | 1.430092e-52 | -8.615850e-47 |
| Msa0053850 | Msa1372030 | 0.813873 | 2.052887e-51 | -8.615850e-47 |
| Msa0053850 | Msa1377140 | 0.811146 | 8.102255e-51 | -8.615850e-47 |
| Msa0053850 | Msa1435630 | 0.806158 | 9.424884e-50 | -8.615850e-47 |
| Msa0053850 | Msa1438140 | 0.813688 | 2.254899e-51 | -8.615850e-47 |
| Msa0053850 | Msa1453030 | 0.808867 | 2.507384e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053850 | MtrunA17_Chr1g0150751 | 85.714 | 217 | 29 | 2 | 1 | 216 | 24 | 239 | 6.60e-76 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCGCCTTCTTCGGGTTC+AGG | 0.278379 | 1_2:+8357557 | Msa0053850:CDS |
| TGAGGCATAATAATAGTAAT+AGG | 0.283637 | 1_2:-8357630 | None:intergenic |
| TTTGAAATCTTCGCCTTCTT+CGG | 0.306660 | 1_2:+8357550 | Msa0053850:CDS |
| GGTGGTCCACCAATTACTTT+AGG | 0.326407 | 1_2:-8357590 | None:intergenic |
| CAAGGACAACCTAAAGTAAT+TGG | 0.337399 | 1_2:+8357581 | Msa0053850:CDS |
| TTGAAATCTTCGCCTTCTTC+GGG | 0.338296 | 1_2:+8357551 | Msa0053850:CDS |
| GAATTTGATGAAGCAAGTTT+AGG | 0.338870 | 1_2:-8357209 | None:intergenic |
| AGTCCTTCGTCACATTCTTC+CGG | 0.348481 | 1_2:+8357509 | Msa0053850:CDS |
| GTCCTTCGTCACATTCTTCC+GGG | 0.349605 | 1_2:+8357510 | Msa0053850:CDS |
| TTTGATGATGTGAGTGGAAA+TGG | 0.378894 | 1_2:-8357392 | None:intergenic |
| TTCATCAGATATTCTTTGCT+TGG | 0.384427 | 1_2:+8357708 | Msa0053850:CDS |
| TAATAATAGTAATAGGGATA+TGG | 0.384788 | 1_2:-8357623 | None:intergenic |
| TGTGTTAGGAGTGGAGTAGA+TGG | 0.387212 | 1_2:-8357329 | None:intergenic |
| TTTAGAAGTGAAGGAGGAGG+AGG | 0.388578 | 1_2:-8357419 | None:intergenic |
| GTTAATAGTGGAGGAGGTGG+AGG | 0.430557 | 1_2:-8357356 | None:intergenic |
| TGGGGTGTTATTAGTGGAAA+AGG | 0.432885 | 1_2:-8357302 | None:intergenic |
| TTGATGATGTGAGTGGAAAT+GGG | 0.439050 | 1_2:-8357391 | None:intergenic |
| CCTTCTTCGGGTTCAGGTCA+AGG | 0.439335 | 1_2:+8357563 | Msa0053850:CDS |
| GGTGAATATGATGTTAATAG+TGG | 0.445887 | 1_2:-8357368 | None:intergenic |
| GAGGCATAATAATAGTAATA+GGG | 0.446723 | 1_2:-8357629 | None:intergenic |
| AGTGGAGTAGATGGAGGGTG+GGG | 0.452281 | 1_2:-8357320 | None:intergenic |
| GGAGGGTGGGGTGTTATTAG+TGG | 0.452753 | 1_2:-8357308 | None:intergenic |
| ATGCATAATAAACCACTTGA+AGG | 0.460999 | 1_2:-8357143 | None:intergenic |
| GGGGTGTTATTAGTGGAAAA+GGG | 0.461571 | 1_2:-8357301 | None:intergenic |
| GATGTTAATAGTGGAGGAGG+TGG | 0.484497 | 1_2:-8357359 | None:intergenic |
| AAAGAGAACATTGGAGATTG+AGG | 0.496507 | 1_2:+8357103 | Msa0053850:CDS |
| GGGTGTTATTAGTGGAAAAG+GGG | 0.496788 | 1_2:-8357300 | None:intergenic |
| GAGTGGAGTAGATGGAGGGT+GGG | 0.505478 | 1_2:-8357321 | None:intergenic |
| GAAGAATGTGACGAAGGACT+TGG | 0.508990 | 1_2:-8357506 | None:intergenic |
| GGCGAAGATTTCAAAGGTGG+TGG | 0.511485 | 1_2:-8357542 | None:intergenic |
| GGAGTGGAGTAGATGGAGGG+TGG | 0.519473 | 1_2:-8357322 | None:intergenic |
| TTTGTTTGCAAAGAGAACAT+TGG | 0.519949 | 1_2:+8357094 | Msa0053850:CDS |
| GGTGGTGGTGAACAAATTGT+AGG | 0.526245 | 1_2:-8357185 | None:intergenic |
| GTCAACAAAGGAGGAGGTGA+AGG | 0.526752 | 1_2:-8357266 | None:intergenic |
| TTTGATGAAGCAAGTTTAGG+AGG | 0.539473 | 1_2:-8357206 | None:intergenic |
| GATGAAGCAAGTTTAGGAGG+TGG | 0.545014 | 1_2:-8357203 | None:intergenic |
| GAAGATTTCAAAGGTGGTGG+AGG | 0.554576 | 1_2:-8357539 | None:intergenic |
| GAATGTGACGAAGGACTTGG+TGG | 0.555897 | 1_2:-8357503 | None:intergenic |
| CCTTGACCTGAACCCGAAGA+AGG | 0.567300 | 1_2:-8357563 | None:intergenic |
| TATGATGTTAATAGTGGAGG+AGG | 0.568744 | 1_2:-8357362 | None:intergenic |
| GGACAACCTAAAGTAATTGG+TGG | 0.583322 | 1_2:+8357584 | Msa0053850:CDS |
| GAAGCAAGTTTAGGAGGTGG+TGG | 0.584772 | 1_2:-8357200 | None:intergenic |
| TGATGATGTGAGTGGAAATG+GGG | 0.585770 | 1_2:-8357390 | None:intergenic |
| AAAGTTGAAGAGCCTTCAAG+TGG | 0.589794 | 1_2:+8357131 | Msa0053850:CDS |
| AGGTGGTGGAGGAGTTTCCC+CGG | 0.592101 | 1_2:-8357528 | None:intergenic |
| GTGGTGGAAGACTTAGTGAT+GGG | 0.594811 | 1_2:-8357454 | None:intergenic |
| GTTAGGAGTGGAGTAGATGG+AGG | 0.597422 | 1_2:-8357326 | None:intergenic |
| TTAGGAGTGGAGTAGATGGA+GGG | 0.598597 | 1_2:-8357325 | None:intergenic |
| TTTGGTGTCAACAAAGGAGG+AGG | 0.602071 | 1_2:-8357272 | None:intergenic |
| GGTGCATTTGGTGTCAACAA+AGG | 0.602133 | 1_2:-8357278 | None:intergenic |
| GAAGGACTTGGTGGAGATGG+TGG | 0.605778 | 1_2:-8357494 | None:intergenic |
| GGTGGAAGACTTAGTGATGG+GGG | 0.608316 | 1_2:-8357452 | None:intergenic |
| GACGAAGGACTTGGTGGAGA+TGG | 0.610720 | 1_2:-8357497 | None:intergenic |
| GAATATGATGTTAATAGTGG+AGG | 0.611804 | 1_2:-8357365 | None:intergenic |
| GGTAGAGTCAACAATGGTGG+TGG | 0.613265 | 1_2:-8357470 | None:intergenic |
| GGACTTGGTGGAGATGGTGG+CGG | 0.623426 | 1_2:-8357491 | None:intergenic |
| GGAGAATTTGATGATGTGAG+TGG | 0.631413 | 1_2:-8357398 | None:intergenic |
| GCATTTGGTGTCAACAAAGG+AGG | 0.639121 | 1_2:-8357275 | None:intergenic |
| TCCTTCGTCACATTCTTCCG+GGG | 0.641768 | 1_2:+8357511 | Msa0053850:CDS |
| TGGTGGAAGACTTAGTGATG+GGG | 0.649103 | 1_2:-8357453 | None:intergenic |
| GAAGAAGGCGAAGATTTCAA+AGG | 0.649156 | 1_2:-8357548 | None:intergenic |
| GAAGGCGAAGATTTCAAAGG+TGG | 0.657373 | 1_2:-8357545 | None:intergenic |
| GGCGGTAGAGTCAACAATGG+TGG | 0.660549 | 1_2:-8357473 | None:intergenic |
| GGTGGTGGAAGACTTAGTGA+TGG | 0.666350 | 1_2:-8357455 | None:intergenic |
| GGTGTTATTAGTGGAAAAGG+GGG | 0.675151 | 1_2:-8357299 | None:intergenic |
| TCCCCGGAAGAATGTGACGA+AGG | 0.679405 | 1_2:-8357512 | None:intergenic |
| GATGATGTGAGTGGAAATGG+GGG | 0.687997 | 1_2:-8357389 | None:intergenic |
| GGTGGCGGTAGAGTCAACAA+TGG | 0.730976 | 1_2:-8357476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAGTAATAGGGATA+TGG | - | chr1_2:8357626-8357645 | None:intergenic | 20.0% |
| ! | GAGGCATAATAATAGTAATA+GGG | - | chr1_2:8357632-8357651 | None:intergenic | 25.0% |
| ! | TGAGGCATAATAATAGTAAT+AGG | - | chr1_2:8357633-8357652 | None:intergenic | 25.0% |
| TTTGTTTGCAAAGAGAACAT+TGG | + | chr1_2:8357094-8357113 | Msa0053850:CDS | 30.0% | |
| ATGCATAATAAACCACTTGA+AGG | - | chr1_2:8357146-8357165 | None:intergenic | 30.0% | |
| GAATTTGATGAAGCAAGTTT+AGG | - | chr1_2:8357212-8357231 | None:intergenic | 30.0% | |
| GAATATGATGTTAATAGTGG+AGG | - | chr1_2:8357368-8357387 | None:intergenic | 30.0% | |
| GGTGAATATGATGTTAATAG+TGG | - | chr1_2:8357371-8357390 | None:intergenic | 30.0% | |
| !! | TATGATTTTAGAAGTGAAGG+AGG | - | chr1_2:8357428-8357447 | None:intergenic | 30.0% |
| !! | GGATATGATTTTAGAAGTGA+AGG | - | chr1_2:8357431-8357450 | None:intergenic | 30.0% |
| TTCATCAGATATTCTTTGCT+TGG | + | chr1_2:8357708-8357727 | Msa0053850:CDS | 30.0% | |
| AAAGAGAACATTGGAGATTG+AGG | + | chr1_2:8357103-8357122 | Msa0053850:CDS | 35.0% | |
| TTTGATGAAGCAAGTTTAGG+AGG | - | chr1_2:8357209-8357228 | None:intergenic | 35.0% | |
| ! | TATGATGTTAATAGTGGAGG+AGG | - | chr1_2:8357365-8357384 | None:intergenic | 35.0% |
| !! | TTGATGATGTGAGTGGAAAT+GGG | - | chr1_2:8357394-8357413 | None:intergenic | 35.0% |
| !! | TTTGATGATGTGAGTGGAAA+TGG | - | chr1_2:8357395-8357414 | None:intergenic | 35.0% |
| ! | TTTGAAATCTTCGCCTTCTT+CGG | + | chr1_2:8357550-8357569 | Msa0053850:CDS | 35.0% |
| CAAGGACAACCTAAAGTAAT+TGG | + | chr1_2:8357581-8357600 | Msa0053850:CDS | 35.0% | |
| !! | TAGGGATATGGATAGTTTTG+TGG | - | chr1_2:8357614-8357633 | None:intergenic | 35.0% |
| AGAAAAATGAGATGCACTTG+AGG | - | chr1_2:8357651-8357670 | None:intergenic | 35.0% | |
| AAAGTTGAAGAGCCTTCAAG+TGG | + | chr1_2:8357131-8357150 | Msa0053850:CDS | 40.0% | |
| ! | AGGTGAAGGATTTTGTGTTG+GGG | - | chr1_2:8357255-8357274 | None:intergenic | 40.0% |
| ! | GAGGTGAAGGATTTTGTGTT+GGG | - | chr1_2:8357256-8357275 | None:intergenic | 40.0% |
| !! | GGTGTTATTAGTGGAAAAGG+GGG | - | chr1_2:8357302-8357321 | None:intergenic | 40.0% |
| !! | GGGTGTTATTAGTGGAAAAG+GGG | - | chr1_2:8357303-8357322 | None:intergenic | 40.0% |
| !! | GGGGTGTTATTAGTGGAAAA+GGG | - | chr1_2:8357304-8357323 | None:intergenic | 40.0% |
| !! | TGGGGTGTTATTAGTGGAAA+AGG | - | chr1_2:8357305-8357324 | None:intergenic | 40.0% |
| ! | TGATGATGTGAGTGGAAATG+GGG | - | chr1_2:8357393-8357412 | None:intergenic | 40.0% |
| !! | GGAGAATTTGATGATGTGAG+TGG | - | chr1_2:8357401-8357420 | None:intergenic | 40.0% |
| !! | GATTTTAGAAGTGAAGGAGG+AGG | - | chr1_2:8357425-8357444 | None:intergenic | 40.0% |
| GAAGAAGGCGAAGATTTCAA+AGG | - | chr1_2:8357551-8357570 | None:intergenic | 40.0% | |
| TTGAAATCTTCGCCTTCTTC+GGG | + | chr1_2:8357551-8357570 | Msa0053850:CDS | 40.0% | |
| GGACAACCTAAAGTAATTGG+TGG | + | chr1_2:8357584-8357603 | Msa0053850:CDS | 40.0% | |
| !!! | GGATATGGATAGTTTTGTGG+TGG | - | chr1_2:8357611-8357630 | None:intergenic | 40.0% |
| ! | GGTGGTGGTGAACAAATTGT+AGG | - | chr1_2:8357188-8357207 | None:intergenic | 45.0% |
| GATGAAGCAAGTTTAGGAGG+TGG | - | chr1_2:8357206-8357225 | None:intergenic | 45.0% | |
| ! | GGTGAAGGATTTTGTGTTGG+GGG | - | chr1_2:8357254-8357273 | None:intergenic | 45.0% |
| ! | GGAGGTGAAGGATTTTGTGT+TGG | - | chr1_2:8357257-8357276 | None:intergenic | 45.0% |
| !! | TTTGGTGTCAACAAAGGAGG+AGG | - | chr1_2:8357275-8357294 | None:intergenic | 45.0% |
| !! | GCATTTGGTGTCAACAAAGG+AGG | - | chr1_2:8357278-8357297 | None:intergenic | 45.0% |
| !! | GGTGCATTTGGTGTCAACAA+AGG | - | chr1_2:8357281-8357300 | None:intergenic | 45.0% |
| TTAGGAGTGGAGTAGATGGA+GGG | - | chr1_2:8357328-8357347 | None:intergenic | 45.0% | |
| TGTGTTAGGAGTGGAGTAGA+TGG | - | chr1_2:8357332-8357351 | None:intergenic | 45.0% | |
| ! | GGAGGATTTTGTGTTAGGAG+TGG | - | chr1_2:8357341-8357360 | None:intergenic | 45.0% |
| ! | GAGGTGGAGGATTTTGTGTT+AGG | - | chr1_2:8357346-8357365 | None:intergenic | 45.0% |
| ! | GATGTTAATAGTGGAGGAGG+TGG | - | chr1_2:8357362-8357381 | None:intergenic | 45.0% |
| GATGATGTGAGTGGAAATGG+GGG | - | chr1_2:8357392-8357411 | None:intergenic | 45.0% | |
| TTTAGAAGTGAAGGAGGAGG+AGG | - | chr1_2:8357422-8357441 | None:intergenic | 45.0% | |
| TGGTGGAAGACTTAGTGATG+GGG | - | chr1_2:8357456-8357475 | None:intergenic | 45.0% | |
| ! | GTGGTGGAAGACTTAGTGAT+GGG | - | chr1_2:8357457-8357476 | None:intergenic | 45.0% |
| GAAGAATGTGACGAAGGACT+TGG | - | chr1_2:8357509-8357528 | None:intergenic | 45.0% | |
| AGTCCTTCGTCACATTCTTC+CGG | + | chr1_2:8357509-8357528 | Msa0053850:CDS | 45.0% | |
| ! | GAAGATTTCAAAGGTGGTGG+AGG | - | chr1_2:8357542-8357561 | None:intergenic | 45.0% |
| GAAGGCGAAGATTTCAAAGG+TGG | - | chr1_2:8357548-8357567 | None:intergenic | 45.0% | |
| GGTGGTCCACCAATTACTTT+AGG | - | chr1_2:8357593-8357612 | None:intergenic | 45.0% | |
| GAAGCAAGTTTAGGAGGTGG+TGG | - | chr1_2:8357203-8357222 | None:intergenic | 50.0% | |
| ! | TTTTGTGTTGGGGGTGAAGG+AGG | - | chr1_2:8357245-8357264 | None:intergenic | 50.0% |
| ! | GGATTTTGTGTTGGGGGTGA+AGG | - | chr1_2:8357248-8357267 | None:intergenic | 50.0% |
| GTCAACAAAGGAGGAGGTGA+AGG | - | chr1_2:8357269-8357288 | None:intergenic | 50.0% | |
| ! | AGTGGAAAAGGGGGTGCATT+TGG | - | chr1_2:8357293-8357312 | None:intergenic | 50.0% |
| GTTAGGAGTGGAGTAGATGG+AGG | - | chr1_2:8357329-8357348 | None:intergenic | 50.0% | |
| ! | GTTAATAGTGGAGGAGGTGG+AGG | - | chr1_2:8357359-8357378 | None:intergenic | 50.0% |
| GGTGGAAGACTTAGTGATGG+GGG | - | chr1_2:8357455-8357474 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAAGACTTAGTGA+TGG | - | chr1_2:8357458-8357477 | None:intergenic | 50.0% |
| GGTAGAGTCAACAATGGTGG+TGG | - | chr1_2:8357473-8357492 | None:intergenic | 50.0% | |
| GAATGTGACGAAGGACTTGG+TGG | - | chr1_2:8357506-8357525 | None:intergenic | 50.0% | |
| GTCCTTCGTCACATTCTTCC+GGG | + | chr1_2:8357510-8357529 | Msa0053850:CDS | 50.0% | |
| TCCTTCGTCACATTCTTCCG+GGG | + | chr1_2:8357511-8357530 | Msa0053850:CDS | 50.0% | |
| GGCGAAGATTTCAAAGGTGG+TGG | - | chr1_2:8357545-8357564 | None:intergenic | 50.0% | |
| !! | GGAGGGTGGGGTGTTATTAG+TGG | - | chr1_2:8357311-8357330 | None:intergenic | 55.0% |
| AGTGGAGTAGATGGAGGGTG+GGG | - | chr1_2:8357323-8357342 | None:intergenic | 55.0% | |
| GAGTGGAGTAGATGGAGGGT+GGG | - | chr1_2:8357324-8357343 | None:intergenic | 55.0% | |
| ! | GGAAGACTTAGTGATGGGGG+AGG | - | chr1_2:8357452-8357471 | None:intergenic | 55.0% |
| GGCGGTAGAGTCAACAATGG+TGG | - | chr1_2:8357476-8357495 | None:intergenic | 55.0% | |
| ! | GGTGGCGGTAGAGTCAACAA+TGG | - | chr1_2:8357479-8357498 | None:intergenic | 55.0% |
| !! | GAAGGACTTGGTGGAGATGG+TGG | - | chr1_2:8357497-8357516 | None:intergenic | 55.0% |
| !! | GACGAAGGACTTGGTGGAGA+TGG | - | chr1_2:8357500-8357519 | None:intergenic | 55.0% |
| TCCCCGGAAGAATGTGACGA+AGG | - | chr1_2:8357515-8357534 | None:intergenic | 55.0% | |
| ! | TCTTCGCCTTCTTCGGGTTC+AGG | + | chr1_2:8357557-8357576 | Msa0053850:CDS | 55.0% |
| CCTTGACCTGAACCCGAAGA+AGG | - | chr1_2:8357566-8357585 | None:intergenic | 55.0% | |
| ! | CCTTCTTCGGGTTCAGGTCA+AGG | + | chr1_2:8357563-8357582 | Msa0053850:CDS | 55.0% |
| GTGTTGGGGGTGAAGGAGGA+GGG | - | chr1_2:8357241-8357260 | None:intergenic | 60.0% | |
| TGTGTTGGGGGTGAAGGAGG+AGG | - | chr1_2:8357242-8357261 | None:intergenic | 60.0% | |
| GGAGTGGAGTAGATGGAGGG+TGG | - | chr1_2:8357325-8357344 | None:intergenic | 60.0% | |
| !! | GGACTTGGTGGAGATGGTGG+CGG | - | chr1_2:8357494-8357513 | None:intergenic | 60.0% |
| !! | AGGTGGTGGAGGAGTTTCCC+CGG | - | chr1_2:8357531-8357550 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 8357083 | 8357733 | 8357083 | ID=Msa0053850;Name=Msa0053850 |
| chr1_2 | mRNA | 8357083 | 8357733 | 8357083 | ID=Msa0053850-mRNA-1;Parent=Msa0053850;Name=Msa0053850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|216 |
| chr1_2 | exon | 8357083 | 8357733 | 8357083 | ID=Msa0053850-mRNA-1:exon:2959;Parent=Msa0053850-mRNA-1 |
| chr1_2 | CDS | 8357083 | 8357733 | 8357083 | ID=Msa0053850-mRNA-1:cds;Parent=Msa0053850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
