Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457510 | XP_003589125.1 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457510 | sp|Q8L9J9|CAES_ARATH | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.81e-95 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457510 | G7I2A7 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0097090 | Msa1457510 | 0.988913 | 6.362258e-176 | -8.615850e-47 |
| Msa1440960 | Msa1457510 | 0.800087 | 1.699041e-48 | -8.615850e-47 |
| Msa0626450 | Msa1457510 | 0.800432 | 1.445485e-48 | -8.615850e-47 |
| Msa0664600 | Msa1457510 | 0.803585 | 3.249563e-49 | -8.615850e-47 |
| Msa0795070 | Msa1457510 | 0.805466 | 1.316764e-49 | -8.615850e-47 |
| Msa0186640 | Msa1457510 | 0.986318 | 2.176754e-166 | -8.615850e-47 |
| Msa0187030 | Msa1457510 | 0.800110 | 1.681048e-48 | -8.615850e-47 |
| Msa1325060 | Msa1457510 | 0.810670 | 1.026898e-50 | -8.615850e-47 |
| Msa1024740 | Msa1457510 | 0.800572 | 1.353185e-48 | -8.615850e-47 |
| Msa0333070 | Msa1457510 | 0.803566 | 3.279716e-49 | -8.615850e-47 |
| Msa0557460 | Msa1457510 | 0.811421 | 7.061834e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457510 | MtrunA17_Chr1g0152921 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Msa1457510 | MtrunA17_Chr3g0134281 | 53.480 | 273 | 114 | 4 | 24 | 284 | 3 | 274 | 1.06e-93 | 279 |
| Msa1457510 | MtrunA17_Chr1g0208131 | 57.851 | 242 | 91 | 4 | 39 | 272 | 9 | 247 | 1.28e-92 | 274 |
| Msa1457510 | MtrunA17_Chr4g0013791 | 49.746 | 197 | 91 | 2 | 24 | 212 | 3 | 199 | 6.00e-63 | 197 |
| Msa1457510 | MtrunA17_Chr0c04g0492041 | 56.707 | 164 | 62 | 3 | 24 | 179 | 3 | 165 | 9.25e-59 | 186 |
| Msa1457510 | MtrunA17_Chr4g0013781 | 58.333 | 60 | 25 | 0 | 212 | 271 | 2 | 61 | 2.41e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457510 | AT4G34215.2 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa1457510 | AT4G34215.1 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa1457510 | AT3G53010.1 | 55.508 | 236 | 95 | 3 | 44 | 272 | 31 | 263 | 2.24e-86 | 260 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCTTCTTGTTATTC+AGG | 0.191069 | tig0038971:-6255 | Msa1457510:intron |
| GATGGGCTTGGTTTGCATTC+TGG | 0.239456 | tig0038971:+6659 | Msa1457510:intergenic |
| AGAATTTAATTGAGAATCTT+AGG | 0.247407 | tig0038971:-6292 | Msa1457510:CDS |
| CTTAGCTCCAACATTAATAA+TGG | 0.266896 | tig0038971:-6840 | Msa1457510:CDS |
| ATGGCTGTTGGAAGCGAAAT+AGG | 0.302064 | tig0038971:+3844 | Msa1457510:intergenic |
| TTTAGTTGCTTTGCCACAAT+GGG | 0.336824 | tig0038971:+6763 | Msa1457510:intergenic |
| GTATTTAGCTTTAAAATTGA+TGG | 0.341457 | tig0038971:+6641 | Msa1457510:intergenic |
| GCATCAACACATTTGACATT+AGG | 0.366408 | tig0038971:+3947 | Msa1457510:intergenic |
| CTTGTGTATAATTAAATTGA+TGG | 0.369566 | tig0038971:+3825 | Msa1457510:intergenic |
| GAAGGTGAGACATGCTCAAT+TGG | 0.371845 | tig0038971:-3981 | Msa1457510:CDS |
| ATGCAGGTAGCACTTGCATC+AGG | 0.373953 | tig0038971:-4022 | Msa1457510:intron |
| AGCTAAATACAAAACTCAAA+TGG | 0.377066 | tig0038971:-6628 | Msa1457510:CDS |
| AGCTTTAAAATTGATGGGCT+TGG | 0.384064 | tig0038971:+6647 | Msa1457510:intergenic |
| ACAATGTCTGAGGTTCATTT+AGG | 0.388776 | tig0038971:-3884 | Msa1457510:CDS |
| ATCACATTTGTATAATGAAT+TGG | 0.419666 | tig0038971:-6435 | Msa1457510:CDS |
| ATTAGCTCCATTATTAATGT+TGG | 0.429292 | tig0038971:+6833 | Msa1457510:intergenic |
| CATTTGTCAGTCGCACAATT+CGG | 0.430045 | tig0038971:-3745 | Msa1457510:three_prime_UTR |
| AAGATCTATTGAATCGGTTA+AGG | 0.437967 | tig0038971:-6408 | Msa1457510:CDS |
| AGAATTGAAGAGTGGAGAAA+TGG | 0.441126 | tig0038971:-6458 | Msa1457510:CDS |
| AGTGGTGGTGAATGTGTTAT+AGG | 0.445867 | tig0038971:-6509 | Msa1457510:CDS |
| GGCTTGGTTTGCATTCTGGT+GGG | 0.447461 | tig0038971:+6663 | Msa1457510:intergenic |
| GCTAAATACAAAACTCAAAT+GGG | 0.451447 | tig0038971:-6627 | Msa1457510:CDS |
| TTCATTTGCAAAAGCAAACC+CGG | 0.451898 | tig0038971:+6544 | Msa1457510:intergenic |
| CTTTAGTTGCTTTGCCACAA+TGG | 0.457722 | tig0038971:+6762 | Msa1457510:intergenic |
| TATTTAGCTTTAAAATTGAT+GGG | 0.464281 | tig0038971:+6642 | Msa1457510:intergenic |
| AAAACTTGTGGTGTTGGACC+CGG | 0.468881 | tig0038971:-6563 | Msa1457510:CDS |
| GGGCTTGGTTTGCATTCTGG+TGG | 0.470102 | tig0038971:+6662 | Msa1457510:intergenic |
| CTTGTTCCTTGTGCAGTTGG+TGG | 0.473553 | tig0038971:-6485 | Msa1457510:CDS |
| GGTCTTGTTCCTTGTGCAGT+TGG | 0.481808 | tig0038971:-6488 | Msa1457510:CDS |
| CATTATTAATGTTGGAGCTA+AGG | 0.491403 | tig0038971:+6841 | Msa1457510:intergenic |
| ATAATTAAATTGATGGCTGT+TGG | 0.497977 | tig0038971:+3832 | Msa1457510:intergenic |
| AAACTTGTGGTGTTGGACCC+GGG | 0.509374 | tig0038971:-6562 | Msa1457510:CDS |
| CTTCATGCAGATATAGATGT+AGG | 0.517583 | tig0038971:-6587 | Msa1457510:CDS |
| TTGTTCCTTGTGCAGTTGGT+GGG | 0.521171 | tig0038971:-6484 | Msa1457510:CDS |
| AAGGTGAGACATGCTCAATT+GGG | 0.524583 | tig0038971:-3980 | Msa1457510:CDS |
| GGTGAGAAGATCTATTGAAT+CGG | 0.527189 | tig0038971:-6414 | Msa1457510:CDS |
| TGTCAAATGTGTTGATGCTA+AGG | 0.537974 | tig0038971:-3942 | Msa1457510:CDS |
| ATTTACATGACAAGCTAAGT+AGG | 0.545635 | tig0038971:-3784 | Msa1457510:three_prime_UTR |
| GAGCTAAGGAAAATGTGTGT+TGG | 0.549437 | tig0038971:+6855 | Msa1457510:intergenic |
| CAAAGCAACATGGCTGGTCG+AGG | 0.552658 | tig0038971:-6719 | Msa1457510:CDS |
| ACCTGAATAACAAGAAGAGA+TGG | 0.554613 | tig0038971:+6254 | Msa1457510:intergenic |
| GCAGGACAAAGCAACATGGC+TGG | 0.563412 | tig0038971:-6725 | Msa1457510:CDS |
| CTCGTCCCACCAACTGCACA+AGG | 0.564466 | tig0038971:+6479 | Msa1457510:intergenic |
| TGAAGGGTATAAATATAGAA+TGG | 0.568134 | tig0038971:-6315 | Msa1457510:CDS |
| TGCAGGTAGCACTTGCATCA+GGG | 0.569182 | tig0038971:-4021 | Msa1457510:intron |
| AATGAAATTGTTAGAATGAG+TGG | 0.572648 | tig0038971:-6527 | Msa1457510:CDS |
| GGAAGGCAAGTTTATAGAGA+AGG | 0.575658 | tig0038971:-3999 | Msa1457510:CDS |
| GCAGGTAGCACTTGCATCAG+GGG | 0.585921 | tig0038971:-4020 | Msa1457510:intron |
| ACATCTATATCTGCATGAAG+AGG | 0.586139 | tig0038971:+6590 | Msa1457510:intergenic |
| GTGGGACGAGAATTGAAGAG+TGG | 0.589128 | tig0038971:-6466 | Msa1457510:CDS |
| GAACCTCAGACATTGTGGTA+AGG | 0.594017 | tig0038971:+3891 | Msa1457510:intergenic |
| TAAATGAACCTCAGACATTG+TGG | 0.604324 | tig0038971:+3886 | Msa1457510:intergenic |
| GTAAGAGAAGAAGATGCTGA+AGG | 0.605787 | tig0038971:-6332 | Msa1457510:CDS |
| GTCAAATGTGTTGATGCTAA+GGG | 0.607569 | tig0038971:-3941 | Msa1457510:CDS |
| TCTATTGAATCGGTTAAGGA+TGG | 0.608408 | tig0038971:-6404 | Msa1457510:CDS |
| TCACCTTACCACAATGTCTG+AGG | 0.609569 | tig0038971:-3894 | Msa1457510:CDS |
| GTAGCACTTGCATCAGGGGA+AGG | 0.611333 | tig0038971:-4016 | Msa1457510:CDS |
| TAAGAGAAGAAGATGCTGAA+GGG | 0.611896 | tig0038971:-6331 | Msa1457510:CDS |
| AGCAACATGGCTGGTCGAGG+AGG | 0.627227 | tig0038971:-6716 | Msa1457510:CDS |
| TCATTTGCAAAAGCAAACCC+GGG | 0.638917 | tig0038971:+6545 | Msa1457510:intergenic |
| GAATCGGTTAAGGATGGTGA+TGG | 0.647703 | tig0038971:-6398 | Msa1457510:CDS |
| GTTGTAACATTACCCCATTG+TGG | 0.661318 | tig0038971:-6776 | Msa1457510:CDS |
| ATTAGCAGGACAAAGCAACA+TGG | 0.671081 | tig0038971:-6729 | Msa1457510:CDS |
| TTAGTTGCTTTGCCACAATG+GGG | 0.682804 | tig0038971:+6764 | Msa1457510:intergenic |
| GAAATTGTTAGAATGAGTGG+TGG | 0.705762 | tig0038971:-6524 | Msa1457510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTTTTTTAATTTAAAATTT+TGG | - | tig0038971:4639-4658 | Msa1457510:intron | 10.0% |
| !! | GTTAAAAAACAAAAAATTAT+AGG | - | tig0038971:5215-5234 | Msa1457510:intron | 10.0% |
| !! | AATTCTCTTATAAAAAATAA+TGG | + | tig0038971:5589-5608 | Msa1457510:intergenic | 10.0% |
| !! | AATACAAAATTTATAACTAA+TGG | - | tig0038971:5731-5750 | Msa1457510:intron | 10.0% |
| !!! | TTTTAAATTTATGCATTTTA+CGG | + | tig0038971:6385-6404 | Msa1457510:intergenic | 10.0% |
| !!! | TATTTAGCTTTAAAATTGAT+GGG | + | tig0038971:3899-3918 | Msa1457510:intergenic | 15.0% |
| !!! | TTTTTTTGTCATTTTTTTGT+TGG | - | tig0038971:4339-4358 | Msa1457510:intron | 15.0% |
| !! | GGAAAAAAAGTAATTAATAT+TGG | + | tig0038971:4813-4832 | Msa1457510:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | tig0038971:4834-4853 | Msa1457510:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | tig0038971:4835-4854 | Msa1457510:intergenic | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | tig0038971:4959-4978 | Msa1457510:intergenic | 15.0% |
| !!! | TAAATTTTGAATCATTAACA+AGG | - | tig0038971:5081-5100 | Msa1457510:intron | 15.0% |
| !! | TATTATTAAACAGATTAGAA+CGG | + | tig0038971:5360-5379 | Msa1457510:intergenic | 15.0% |
| !!! | TAAAAAACAAGTTTTTTAAC+AGG | + | tig0038971:5527-5546 | Msa1457510:intergenic | 15.0% |
| !! | AAAATGAAATAGTACTTATA+CGG | - | tig0038971:5782-5801 | Msa1457510:intron | 15.0% |
| !! | TTGACTAATAAGAAAATTTA+AGG | - | tig0038971:5897-5916 | Msa1457510:intron | 15.0% |
| !! | AACAATGTATAATATATGTA+AGG | - | tig0038971:6120-6139 | Msa1457510:intron | 15.0% |
| !!! | TTTAAAATGATAAAGTTAAG+AGG | - | tig0038971:6255-6274 | Msa1457510:intron | 15.0% |
| !!! | GTATTTAGCTTTAAAATTGA+TGG | + | tig0038971:3900-3919 | Msa1457510:intergenic | 20.0% |
| !! | ATCACATTTGTATAATGAAT+TGG | - | tig0038971:4103-4122 | Msa1457510:intron | 20.0% |
| !! | AGAATTTAATTGAGAATCTT+AGG | - | tig0038971:4246-4265 | Msa1457510:intron | 20.0% |
| !!! | GAAATTTGAAATTCGAATAT+AGG | + | tig0038971:4582-4601 | Msa1457510:intergenic | 20.0% |
| !!! | CTTTTTTGATGGATAATTAT+GGG | + | tig0038971:4672-4691 | Msa1457510:intergenic | 20.0% |
| !!! | ACTTTTTTGATGGATAATTA+TGG | + | tig0038971:4673-4692 | Msa1457510:intergenic | 20.0% |
| !! | AATTATCCATCAAAAAAGTT+TGG | - | tig0038971:4674-4693 | Msa1457510:intron | 20.0% |
| !! | ATTATCCATCAAAAAAGTTT+GGG | - | tig0038971:4675-4694 | Msa1457510:intron | 20.0% |
| !! | ATTATTAAACAGATTAGAAC+GGG | + | tig0038971:5359-5378 | Msa1457510:intergenic | 20.0% |
| !!! | GATTTTTCAATAATGAAATG+AGG | - | tig0038971:5397-5416 | Msa1457510:intron | 20.0% |
| !!! | GTTCTGTTTTCAATAATAAA+GGG | + | tig0038971:5445-5464 | Msa1457510:intergenic | 20.0% |
| !!! | AGTTCTGTTTTCAATAATAA+AGG | + | tig0038971:5446-5465 | Msa1457510:intergenic | 20.0% |
| !!! | AACTTTTTCTTTTTGTACAT+TGG | - | tig0038971:5494-5513 | Msa1457510:intron | 20.0% |
| !! | ATTGATGAAGAAAAAAACAT+AGG | + | tig0038971:6038-6057 | Msa1457510:intergenic | 20.0% |
| !!! | ATATATGCCTTTGTATTTTT+TGG | + | tig0038971:6171-6190 | Msa1457510:intergenic | 20.0% |
| !! | AATAAAGCAACAAATAATCA+CGG | - | tig0038971:6279-6298 | Msa1457510:CDS | 20.0% |
| !! | CATAAAAATAATTTAAGTGG+TGG | + | tig0038971:6499-6518 | Msa1457510:intergenic | 20.0% |
| !! | CTGCATAAAAATAATTTAAG+TGG | + | tig0038971:6502-6521 | Msa1457510:intergenic | 20.0% |
| !!! | CACTTAAATTATTTTTATGC+AGG | - | tig0038971:6500-6519 | Msa1457510:CDS | 20.0% |
| !! | CTTGTGTATAATTAAATTGA+TGG | + | tig0038971:6716-6735 | Msa1457510:intergenic | 20.0% |
| ! | ATTAGCTCCATTATTAATGT+TGG | + | tig0038971:3708-3727 | Msa1457510:intergenic | 25.0% |
| !! | AAAGACATTTTCATATTAGC+AGG | - | tig0038971:3795-3814 | Msa1457510:three_prime_UTR | 25.0% |
| !!! | AGGTGTTTTAAATGGAAAAT+GGG | - | tig0038971:3842-3861 | Msa1457510:CDS | 25.0% |
| ! | AGCTAAATACAAAACTCAAA+TGG | - | tig0038971:3910-3929 | Msa1457510:CDS | 25.0% |
| ! | GCTAAATACAAAACTCAAAT+GGG | - | tig0038971:3911-3930 | Msa1457510:CDS | 25.0% |
| ! | AATGAAATTGTTAGAATGAG+TGG | - | tig0038971:4011-4030 | Msa1457510:CDS | 25.0% |
| !! | TGAAGGGTATAAATATAGAA+TGG | - | tig0038971:4223-4242 | Msa1457510:intron | 25.0% |
| !! | TTCAACTTTTCTATGTAGAT+TGG | + | tig0038971:4529-4548 | Msa1457510:intergenic | 25.0% |
| ! | TGAAAATCTTAAAAGAAGAC+AGG | - | tig0038971:4545-4564 | Msa1457510:intron | 25.0% |
| ! | GTAAATGACTCAGTTATTAT+GGG | + | tig0038971:4744-4763 | Msa1457510:intergenic | 25.0% |
| ! | TGTAAATGACTCAGTTATTA+TGG | + | tig0038971:4745-4764 | Msa1457510:intergenic | 25.0% |
| ! | AGTGGAATATGTATTGAATT+GGG | + | tig0038971:4870-4889 | Msa1457510:intergenic | 25.0% |
| ! | AAGTGGAATATGTATTGAAT+TGG | + | tig0038971:4871-4890 | Msa1457510:intergenic | 25.0% |
| !! | TAAGTGCTTTTGTTAAGTAT+TGG | + | tig0038971:4919-4938 | Msa1457510:intergenic | 25.0% |
| ! | AGCATGATTCGAAAAATTTA+TGG | - | tig0038971:5126-5145 | Msa1457510:intron | 25.0% |
| ! | ATGATTCGAAAAATTTATGG+AGG | - | tig0038971:5129-5148 | Msa1457510:intron | 25.0% |
| ! | AGTAGTTTAACAAATTGACA+AGG | - | tig0038971:5159-5178 | Msa1457510:intron | 25.0% |
| ! | GTAGTTTAACAAATTGACAA+GGG | - | tig0038971:5160-5179 | Msa1457510:intron | 25.0% |
| ! | TTCTCTTAATCAATGTCTTA+AGG | - | tig0038971:5271-5290 | Msa1457510:intron | 25.0% |
| ! | TCTCTTAATCAATGTCTTAA+GGG | - | tig0038971:5272-5291 | Msa1457510:intron | 25.0% |
| ! | GAAAAAGTAGATTGAGATAA+TGG | + | tig0038971:5564-5583 | Msa1457510:intergenic | 25.0% |
| !!! | GTCAAATAGTTGTTGTTTTT+TGG | + | tig0038971:5699-5718 | Msa1457510:intergenic | 25.0% |
| ! | ACTTATACGGTATAAATATG+TGG | - | tig0038971:5795-5814 | Msa1457510:intron | 25.0% |
| !!! | AATTCTCGCTTTTACTTAAT+TGG | + | tig0038971:5986-6005 | Msa1457510:intergenic | 25.0% |
| ! | TGTATAATATATGTAAGGTC+TGG | - | tig0038971:6125-6144 | Msa1457510:intron | 25.0% |
| ! | CATATATATCCTAACTAAGT+TGG | - | tig0038971:6184-6203 | Msa1457510:intron | 25.0% |
| ! | ATTCTTGCTAATTGGATTAT+TGG | + | tig0038971:6212-6231 | Msa1457510:intergenic | 25.0% |
| !! | ATAATTAAATTGATGGCTGT+TGG | + | tig0038971:6709-6728 | Msa1457510:intergenic | 25.0% |
| !!! | GAAAATGTGTGTTGGTTTTT+AGG | + | tig0038971:3678-3697 | Msa1448900:intergenic | 30.0% |
| CATTATTAATGTTGGAGCTA+AGG | + | tig0038971:3700-3719 | Msa1448900:intergenic | 30.0% | |
| CTTAGCTCCAACATTAATAA+TGG | - | tig0038971:3698-3717 | Msa1457510:three_prime_UTR | 30.0% | |
| !! | GTCAATGTTTTTGTGTGTTT+TGG | - | tig0038971:3740-3759 | Msa1457510:three_prime_UTR | 30.0% |
| !! | GAGGTGTTTTAAATGGAAAA+TGG | - | tig0038971:3841-3860 | Msa1457510:CDS | 30.0% |
| !! | GTTTTAAATGGAAAATGGGA+TGG | - | tig0038971:3846-3865 | Msa1457510:CDS | 30.0% |
| ATAGATGTAGGAAAAACTTG+TGG | - | tig0038971:3963-3982 | Msa1457510:CDS | 30.0% | |
| AAGATCTATTGAATCGGTTA+AGG | - | tig0038971:4130-4149 | Msa1457510:intron | 30.0% | |
| ! | GTGTAATTAGAGCAGTTTTA+TGG | - | tig0038971:4162-4181 | Msa1457510:intron | 30.0% |
| !!! | GTTTGCGTTTTTTAGTGTAT+TGG | - | tig0038971:4491-4510 | Msa1457510:intron | 30.0% |
| AATCTTAAAAGAAGACAGGA+AGG | - | tig0038971:4549-4568 | Msa1457510:intron | 30.0% | |
| ATCTTAAAAGAAGACAGGAA+GGG | - | tig0038971:4550-4569 | Msa1457510:intron | 30.0% | |
| CCACTATCATAAATACAAAG+TGG | + | tig0038971:4888-4907 | Msa1457510:intergenic | 30.0% | |
| CCACTTTGTATTTATGATAG+TGG | - | tig0038971:4885-4904 | Msa1457510:intron | 30.0% | |
| AAATGAAGGAGAGAGAAAAA+TGG | + | tig0038971:4945-4964 | Msa1457510:intergenic | 30.0% | |
| !!! | GTTTTTTAACAAGTGCTCTT+AGG | + | tig0038971:5205-5224 | Msa1457510:intergenic | 30.0% |
| ! | ATGTTATCTTGACAACCTTT+TGG | + | tig0038971:5831-5850 | Msa1457510:intergenic | 30.0% |
| !!! | TATGCCTTTGTATTTTTTGG+TGG | + | tig0038971:6168-6187 | Msa1457510:intergenic | 30.0% |
| TTATTGGTACCAACTTAGTT+AGG | + | tig0038971:6196-6215 | Msa1457510:intergenic | 30.0% | |
| TGCTTTCAATTCTTGCTAAT+TGG | + | tig0038971:6220-6239 | Msa1457510:intergenic | 30.0% | |
| CCATCTTCATATCAATCAAA+GGG | + | tig0038971:6324-6343 | Msa1457510:intergenic | 30.0% | |
| CCTTTGATTGATATGAAGAT+GGG | - | tig0038971:6322-6341 | Msa1457510:CDS | 30.0% | |
| ! | TTTTACGGTATGCAATCAAT+TGG | + | tig0038971:6370-6389 | Msa1457510:intergenic | 30.0% |
| ATTTACATGACAAGCTAAGT+AGG | - | tig0038971:6754-6773 | Msa1457510:CDS | 30.0% | |
| !!! | CACATTTTGACTTGGTAAAT+TGG | - | tig0038971:6841-6860 | Msa1457510:CDS | 30.0% |
| !! | GTTTTTAGGCATATGGAAGA+GGG | + | tig0038971:3664-3683 | Msa1448900:intergenic | 35.0% |
| !!! | TGTGTTGGTTTTTAGGCATA+TGG | + | tig0038971:3671-3690 | Msa1448900:intergenic | 35.0% |
| ! | TTTAGTTGCTTTGCCACAAT+GGG | + | tig0038971:3778-3797 | Msa1457510:intergenic | 35.0% |
| !! | AGCTTTAAAATTGATGGGCT+TGG | + | tig0038971:3894-3913 | Msa1457510:intergenic | 35.0% |
| ACATCTATATCTGCATGAAG+AGG | + | tig0038971:3951-3970 | Msa1457510:intergenic | 35.0% | |
| CTTCATGCAGATATAGATGT+AGG | - | tig0038971:3951-3970 | Msa1457510:CDS | 35.0% | |
| TTCATTTGCAAAAGCAAACC+CGG | + | tig0038971:3997-4016 | Msa1457510:intergenic | 35.0% | |
| GAAATTGTTAGAATGAGTGG+TGG | - | tig0038971:4014-4033 | Msa1457510:CDS | 35.0% | |
| AGAATTGAAGAGTGGAGAAA+TGG | - | tig0038971:4080-4099 | Msa1457510:intron | 35.0% | |
| GGTGAGAAGATCTATTGAAT+CGG | - | tig0038971:4124-4143 | Msa1457510:intron | 35.0% | |
| TCTATTGAATCGGTTAAGGA+TGG | - | tig0038971:4134-4153 | Msa1457510:intron | 35.0% | |
| !! | AGAGCAGTTTTATGGTATCA+AGG | - | tig0038971:4170-4189 | Msa1457510:intron | 35.0% |
| TAAGAGAAGAAGATGCTGAA+GGG | - | tig0038971:4207-4226 | Msa1457510:intron | 35.0% | |
| !! | TCCATCTCTTCTTGTTATTC+AGG | - | tig0038971:4283-4302 | Msa1457510:intron | 35.0% |
| ACCTGAATAACAAGAAGAGA+TGG | + | tig0038971:4287-4306 | Msa1457510:intergenic | 35.0% | |
| GATTGAACACTATTCCAGAT+GGG | + | tig0038971:4398-4417 | Msa1457510:intergenic | 35.0% | |
| TGATTGAACACTATTCCAGA+TGG | + | tig0038971:4399-4418 | Msa1457510:intergenic | 35.0% | |
| GCGTGATGAATGTAAATGAT+AGG | - | tig0038971:4608-4627 | Msa1457510:intron | 35.0% | |
| !!! | CGTTTCCCAAACTTTTTTGA+TGG | + | tig0038971:4683-4702 | Msa1457510:intergenic | 35.0% |
| ATGACTCAGTTATTATGGGA+CGG | + | tig0038971:4740-4759 | Msa1457510:intergenic | 35.0% | |
| !!! | GTGCTTTTGTTAAGTATTGG+TGG | + | tig0038971:4916-4935 | Msa1457510:intergenic | 35.0% |
| ATATGTGTGAAATGAGCTAG+CGG | - | tig0038971:4979-4998 | Msa1457510:intron | 35.0% | |
| TAATCAATGTCTTAAGGGCA+CGG | - | tig0038971:5277-5296 | Msa1457510:intron | 35.0% | |
| ACGGTATAAATATGTGGTGT+TGG | - | tig0038971:5801-5820 | Msa1457510:intron | 35.0% | |
| !!! | TTGTATTTTTTGGTGGTGTC+TGG | + | tig0038971:6161-6180 | Msa1457510:intergenic | 35.0% |
| GACACCACCAAAAAATACAA+AGG | - | tig0038971:6161-6180 | Msa1457510:intron | 35.0% | |
| CCCTTTGATTGATATGAAGA+TGG | - | tig0038971:6321-6340 | Msa1457510:CDS | 35.0% | |
| CCCATCTTCATATCAATCAA+AGG | + | tig0038971:6325-6344 | Msa1457510:intergenic | 35.0% | |
| GCATCAACACATTTGACATT+AGG | + | tig0038971:6594-6613 | Msa1457510:intergenic | 35.0% | |
| ! | TGTCAAATGTGTTGATGCTA+AGG | - | tig0038971:6596-6615 | Msa1457510:CDS | 35.0% |
| ! | GTCAAATGTGTTGATGCTAA+GGG | - | tig0038971:6597-6616 | Msa1457510:CDS | 35.0% |
| TAAATGAACCTCAGACATTG+TGG | + | tig0038971:6655-6674 | Msa1457510:intergenic | 35.0% | |
| ! | ACAATGTCTGAGGTTCATTT+AGG | - | tig0038971:6654-6673 | Msa1457510:CDS | 35.0% |
| !!! | GAACAACTCACATTTTGACT+TGG | - | tig0038971:6833-6852 | Msa1457510:CDS | 35.0% |
| !! | GGTTTTTAGGCATATGGAAG+AGG | + | tig0038971:3665-3684 | Msa1448900:intergenic | 40.0% |
| GAGCTAAGGAAAATGTGTGT+TGG | + | tig0038971:3686-3705 | Msa1448900:intergenic | 40.0% | |
| GTTGTAACATTACCCCATTG+TGG | - | tig0038971:3762-3781 | Msa1457510:three_prime_UTR | 40.0% | |
| ! | TTAGTTGCTTTGCCACAATG+GGG | + | tig0038971:3777-3796 | Msa1457510:intergenic | 40.0% |
| ! | CTTTAGTTGCTTTGCCACAA+TGG | + | tig0038971:3779-3798 | Msa1457510:intergenic | 40.0% |
| ATTAGCAGGACAAAGCAACA+TGG | - | tig0038971:3809-3828 | Msa1457510:exon | 40.0% | |
| GTAGGAAAAACTTGTGGTGT+TGG | - | tig0038971:3969-3988 | Msa1457510:CDS | 40.0% | |
| TCATTTGCAAAAGCAAACCC+GGG | + | tig0038971:3996-4015 | Msa1457510:intergenic | 40.0% | |
| ! | AGTGGTGGTGAATGTGTTAT+AGG | - | tig0038971:4029-4048 | Msa1457510:intron | 40.0% |
| GTAAGAGAAGAAGATGCTGA+AGG | - | tig0038971:4206-4225 | Msa1457510:intron | 40.0% | |
| TCTTGATACATTCACCCATC+TGG | - | tig0038971:4381-4400 | Msa1457510:intron | 40.0% | |
| AGCTAGCGGCTCAATTAATT+CGG | - | tig0038971:4993-5012 | Msa1457510:intron | 40.0% | |
| CAAGTTGTCACGTTTGTCAA+TGG | + | tig0038971:5315-5334 | Msa1457510:intergenic | 40.0% | |
| TGTGCAAGTTGTGATAGACA+CGG | - | tig0038971:6058-6077 | Msa1457510:intron | 40.0% | |
| CAAATAATCACGGTGCAACA+TGG | - | tig0038971:6289-6308 | Msa1457510:CDS | 40.0% | |
| GGAAGGCAAGTTTATAGAGA+AGG | - | tig0038971:6539-6558 | Msa1457510:CDS | 40.0% | |
| AAGGTGAGACATGCTCAATT+GGG | - | tig0038971:6558-6577 | Msa1457510:CDS | 40.0% | |
| CATTTGTCAGTCGCACAATT+CGG | - | tig0038971:6793-6812 | Msa1457510:CDS | 40.0% | |
| !!! | GGTCGAGGAGGTGTTTTAAA+TGG | - | tig0038971:3834-3853 | Msa1457510:CDS | 45.0% |
| ! | AAAACTTGTGGTGTTGGACC+CGG | - | tig0038971:3975-3994 | Msa1457510:CDS | 45.0% |
| TTGTTCCTTGTGCAGTTGGT+GGG | - | tig0038971:4054-4073 | Msa1457510:intron | 45.0% | |
| GAATCGGTTAAGGATGGTGA+TGG | - | tig0038971:4140-4159 | Msa1457510:intron | 45.0% | |
| CTCAGTTATTATGGGACGGA+GGG | + | tig0038971:4736-4755 | Msa1457510:intergenic | 45.0% | |
| ACTCAGTTATTATGGGACGG+AGG | + | tig0038971:4737-4756 | Msa1457510:intergenic | 45.0% | |
| GCGGCTCAATTAATTCGGAA+CGG | - | tig0038971:4998-5017 | Msa1457510:intron | 45.0% | |
| CGGCTCAATTAATTCGGAAC+GGG | - | tig0038971:4999-5018 | Msa1457510:intron | 45.0% | |
| ! | TGTGGTGTTGGACAACCAAA+AGG | - | tig0038971:5813-5832 | Msa1457510:intron | 45.0% |
| GTGCAAGTTGTGATAGACAC+GGG | - | tig0038971:6059-6078 | Msa1457510:intron | 45.0% | |
| GAAGGTGAGACATGCTCAAT+TGG | - | tig0038971:6557-6576 | Msa1457510:CDS | 45.0% | |
| TCACCTTACCACAATGTCTG+AGG | - | tig0038971:6644-6663 | Msa1457510:CDS | 45.0% | |
| GAACCTCAGACATTGTGGTA+AGG | + | tig0038971:6650-6669 | Msa1457510:intergenic | 45.0% | |
| ATGGCTGTTGGAAGCGAAAT+AGG | + | tig0038971:6697-6716 | Msa1457510:intergenic | 45.0% | |
| !!! | TAAATTTTGTATTTTTATAT+TGG | + | tig0038971:5724-5743 | Msa1457510:intergenic | 5.0% |
| !! | GGCTTGGTTTGCATTCTGGT+GGG | + | tig0038971:3878-3897 | Msa1457510:intergenic | 50.0% |
| !! | GATGGGCTTGGTTTGCATTC+TGG | + | tig0038971:3882-3901 | Msa1457510:intergenic | 50.0% |
| ! | AAACTTGTGGTGTTGGACCC+GGG | - | tig0038971:3976-3995 | Msa1457510:CDS | 50.0% |
| !! | GGTCTTGTTCCTTGTGCAGT+TGG | - | tig0038971:4050-4069 | Msa1457510:intron | 50.0% |
| CTTGTTCCTTGTGCAGTTGG+TGG | - | tig0038971:4053-4072 | Msa1457510:intron | 50.0% | |
| GTGGGACGAGAATTGAAGAG+TGG | - | tig0038971:4072-4091 | Msa1457510:intron | 50.0% | |
| ATGCAGGTAGCACTTGCATC+AGG | - | tig0038971:6516-6535 | Msa1457510:CDS | 50.0% | |
| TGCAGGTAGCACTTGCATCA+GGG | - | tig0038971:6517-6536 | Msa1457510:CDS | 50.0% | |
| GCAGGACAAAGCAACATGGC+TGG | - | tig0038971:3813-3832 | Msa1457510:exon | 55.0% | |
| ! | CAAAGCAACATGGCTGGTCG+AGG | - | tig0038971:3819-3838 | Msa1457510:CDS | 55.0% |
| !! | GGGCTTGGTTTGCATTCTGG+TGG | + | tig0038971:3879-3898 | Msa1457510:intergenic | 55.0% |
| CCAACTGAGCTGAGCTCGTA+GGG | + | tig0038971:6096-6115 | Msa1457510:intergenic | 55.0% | |
| ACCAACTGAGCTGAGCTCGT+AGG | + | tig0038971:6097-6116 | Msa1457510:intergenic | 55.0% | |
| CACGGTGCAACATGGAGTCA+TGG | - | tig0038971:6297-6316 | Msa1457510:CDS | 55.0% | |
| GCAGGTAGCACTTGCATCAG+GGG | - | tig0038971:6518-6537 | Msa1457510:CDS | 55.0% | |
| GTAGCACTTGCATCAGGGGA+AGG | - | tig0038971:6522-6541 | Msa1457510:CDS | 55.0% | |
| ! | AGCAACATGGCTGGTCGAGG+AGG | - | tig0038971:3822-3841 | Msa1457510:CDS | 60.0% |
| CTCGTCCCACCAACTGCACA+AGG | + | tig0038971:4062-4081 | Msa1457510:intergenic | 60.0% | |
| CCCTACGAGCTCAGCTCAGT+TGG | - | tig0038971:6093-6112 | Msa1457510:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038971 | gene | 3651 | 6909 | 3651 | ID=Msa1457510;Name=Msa1457510 |
| tig0038971 | mRNA | 3651 | 6909 | 3651 | ID=Msa1457510-mRNA-1;Parent=Msa1457510;Name=Msa1457510-mRNA-1;_AED=0.03;_eAED=0.03;_QI=21|1|1|1|1|1|2|166|284 |
| tig0038971 | exon | 3651 | 4038 | 3651 | ID=Msa1457510-mRNA-1:exon:21222;Parent=Msa1457510-mRNA-1 |
| tig0038971 | exon | 6256 | 6909 | 6256 | ID=Msa1457510-mRNA-1:exon:21221;Parent=Msa1457510-mRNA-1 |
| tig0038971 | five_prime_UTR | 6889 | 6909 | 6889 | ID=Msa1457510-mRNA-1:five_prime_utr;Parent=Msa1457510-mRNA-1 |
| tig0038971 | CDS | 6256 | 6888 | 6256 | ID=Msa1457510-mRNA-1:cds;Parent=Msa1457510-mRNA-1 |
| tig0038971 | CDS | 3817 | 4038 | 3817 | ID=Msa1457510-mRNA-1:cds;Parent=Msa1457510-mRNA-1 |
| tig0038971 | three_prime_UTR | 3651 | 3816 | 3651 | ID=Msa1457510-mRNA-1:three_prime_utr;Parent=Msa1457510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
