Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097090 | sp|Q8L9J9|CAES_ARATH | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.81e-95 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097090 | G7I2A7 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0097090 | 0.801933 | 7.125046e-49 | -8.615850e-47 |
| Msa0097090 | Msa0186640 | 0.990867 | 1.021808e-184 | -8.615850e-47 |
| Msa0097090 | Msa0187030 | 0.813460 | 2.530700e-51 | -8.615850e-47 |
| Msa0097090 | Msa0251080 | 0.803245 | 3.822872e-49 | -8.615850e-47 |
| Msa0097090 | Msa0333070 | 0.809525 | 1.812701e-50 | -8.615850e-47 |
| Msa0097090 | Msa0389880 | 0.814206 | 1.733819e-51 | -8.615850e-47 |
| Msa0097090 | Msa0392380 | 0.804733 | 1.874625e-49 | -8.615850e-47 |
| Msa0097090 | Msa0440320 | 0.802771 | 4.789996e-49 | -8.615850e-47 |
| Msa0097090 | Msa0487500 | 0.801442 | 8.986535e-49 | -8.615850e-47 |
| Msa0097090 | Msa0557460 | 0.811949 | 5.420519e-51 | -8.615850e-47 |
| Msa0097090 | Msa0579660 | 0.802588 | 5.224992e-49 | -8.615850e-47 |
| Msa0097090 | Msa0626450 | 0.815943 | 7.134032e-52 | -8.615850e-47 |
| Msa0097090 | Msa0626490 | 0.815327 | 9.786009e-52 | -8.615850e-47 |
| Msa0097090 | Msa0664600 | 0.820113 | 8.142711e-53 | -8.615850e-47 |
| Msa0097090 | Msa0795070 | 0.817467 | 3.247812e-52 | -8.615850e-47 |
| Msa0097090 | Msa0875290 | 0.805749 | 1.148398e-49 | -8.615850e-47 |
| Msa0097090 | Msa0974060 | 0.816438 | 5.530670e-52 | -8.615850e-47 |
| Msa0097090 | Msa1019000 | 0.806188 | 9.287323e-50 | -8.615850e-47 |
| Msa0097090 | Msa1024740 | 0.821054 | 4.949933e-53 | -8.615850e-47 |
| Msa0097090 | Msa1063500 | 0.806600 | 7.602640e-50 | -8.615850e-47 |
| Msa0097090 | Msa1108790 | 0.816994 | 4.149904e-52 | -8.615850e-47 |
| Msa0097090 | Msa1147740 | 0.803494 | 3.393608e-49 | -8.615850e-47 |
| Msa0097090 | Msa1269480 | 0.801118 | 1.047141e-48 | -8.615850e-47 |
| Msa0097090 | Msa1325060 | 0.824715 | 6.947335e-54 | -8.615850e-47 |
| Msa0097090 | Msa1349550 | 0.800442 | 1.438554e-48 | -8.615850e-47 |
| Msa0097090 | Msa1440960 | 0.813226 | 2.849971e-51 | -8.615850e-47 |
| Msa0097090 | Msa1457510 | 0.988913 | 6.362258e-176 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097090 | MtrunA17_Chr1g0152921 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Msa0097090 | MtrunA17_Chr3g0134281 | 53.480 | 273 | 114 | 4 | 24 | 284 | 3 | 274 | 1.06e-93 | 279 |
| Msa0097090 | MtrunA17_Chr1g0208131 | 57.851 | 242 | 91 | 4 | 39 | 272 | 9 | 247 | 1.28e-92 | 274 |
| Msa0097090 | MtrunA17_Chr4g0013791 | 49.746 | 197 | 91 | 2 | 24 | 212 | 3 | 199 | 6.00e-63 | 197 |
| Msa0097090 | MtrunA17_Chr0c04g0492041 | 56.707 | 164 | 62 | 3 | 24 | 179 | 3 | 165 | 9.25e-59 | 186 |
| Msa0097090 | MtrunA17_Chr4g0013781 | 58.333 | 60 | 25 | 0 | 212 | 271 | 2 | 61 | 2.41e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097090 | AT4G34215.2 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa0097090 | AT4G34215.1 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa0097090 | AT3G53010.1 | 55.508 | 236 | 95 | 3 | 44 | 272 | 31 | 263 | 2.24e-86 | 260 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCTTCTTGTTATTC+AGG | 0.191069 | 1_3:-2904721 | Msa0097090:intron |
| GATGGGCTTGGTTTGCATTC+TGG | 0.239456 | 1_3:+2905125 | None:intergenic |
| AGAATTTAATTGAGAATCTT+AGG | 0.247407 | 1_3:-2904758 | Msa0097090:CDS |
| CTTAGCTCCAACATTAATAA+TGG | 0.266896 | 1_3:-2905306 | Msa0097090:CDS |
| ATGGCTGTTGGAAGCGAAAT+AGG | 0.302064 | 1_3:+2902295 | None:intergenic |
| TTTAGTTGCTTTGCCACAAT+GGG | 0.336824 | 1_3:+2905229 | None:intergenic |
| GTATTTAGCTTTAAAATTGA+TGG | 0.341457 | 1_3:+2905107 | None:intergenic |
| GCATCAACACATTTGACATT+AGG | 0.366408 | 1_3:+2902398 | None:intergenic |
| CTTGTGTATAATTAAATTGA+TGG | 0.369566 | 1_3:+2902276 | None:intergenic |
| GAAGGTGAGACATGCTCAAT+TGG | 0.371845 | 1_3:-2902432 | Msa0097090:CDS |
| ATGCAGGTAGCACTTGCATC+AGG | 0.373953 | 1_3:-2902473 | Msa0097090:intron |
| AGCTAAATACAAAACTCAAA+TGG | 0.377066 | 1_3:-2905094 | Msa0097090:CDS |
| AGCTTTAAAATTGATGGGCT+TGG | 0.384064 | 1_3:+2905113 | None:intergenic |
| ACAATGTCTGAGGTTCATTT+AGG | 0.388776 | 1_3:-2902335 | Msa0097090:CDS |
| ATCACATTTGTATAATGAAT+TGG | 0.419666 | 1_3:-2904901 | Msa0097090:CDS |
| ATTAGCTCCATTATTAATGT+TGG | 0.429292 | 1_3:+2905299 | None:intergenic |
| CATTTGTCAGTCGCACAATT+CGG | 0.430045 | 1_3:-2902196 | Msa0097090:three_prime_UTR |
| AAGATCTATTGAATCGGTTA+AGG | 0.437967 | 1_3:-2904874 | Msa0097090:CDS |
| AGAATTGAAGAGTGGAGAAA+TGG | 0.441126 | 1_3:-2904924 | Msa0097090:CDS |
| AGTGGTGGTGAATGTGTTAT+AGG | 0.445867 | 1_3:-2904975 | Msa0097090:CDS |
| GGCTTGGTTTGCATTCTGGT+GGG | 0.447461 | 1_3:+2905129 | None:intergenic |
| GCTAAATACAAAACTCAAAT+GGG | 0.451447 | 1_3:-2905093 | Msa0097090:CDS |
| TTCATTTGCAAAAGCAAACC+CGG | 0.451898 | 1_3:+2905010 | None:intergenic |
| CTTTAGTTGCTTTGCCACAA+TGG | 0.457722 | 1_3:+2905228 | None:intergenic |
| TATTTAGCTTTAAAATTGAT+GGG | 0.464281 | 1_3:+2905108 | None:intergenic |
| AAAACTTGTGGTGTTGGACC+CGG | 0.468881 | 1_3:-2905029 | Msa0097090:CDS |
| GGGCTTGGTTTGCATTCTGG+TGG | 0.470102 | 1_3:+2905128 | None:intergenic |
| CTTGTTCCTTGTGCAGTTGG+TGG | 0.473553 | 1_3:-2904951 | Msa0097090:CDS |
| GGTCTTGTTCCTTGTGCAGT+TGG | 0.481808 | 1_3:-2904954 | Msa0097090:CDS |
| CATTATTAATGTTGGAGCTA+AGG | 0.491403 | 1_3:+2905307 | None:intergenic |
| ATAATTAAATTGATGGCTGT+TGG | 0.497977 | 1_3:+2902283 | None:intergenic |
| AAACTTGTGGTGTTGGACCC+GGG | 0.509374 | 1_3:-2905028 | Msa0097090:CDS |
| CTTCATGCAGATATAGATGT+AGG | 0.517583 | 1_3:-2905053 | Msa0097090:CDS |
| TTGTTCCTTGTGCAGTTGGT+GGG | 0.521171 | 1_3:-2904950 | Msa0097090:CDS |
| AAGGTGAGACATGCTCAATT+GGG | 0.524583 | 1_3:-2902431 | Msa0097090:CDS |
| GGTGAGAAGATCTATTGAAT+CGG | 0.527189 | 1_3:-2904880 | Msa0097090:CDS |
| TGTCAAATGTGTTGATGCTA+AGG | 0.537974 | 1_3:-2902393 | Msa0097090:CDS |
| ATTTACATGACAAGCTAAGT+AGG | 0.545635 | 1_3:-2902235 | Msa0097090:three_prime_UTR |
| GAGCTAAGGAAAATGTGTGT+TGG | 0.549437 | 1_3:+2905321 | None:intergenic |
| CAAAGCAACATGGCTGGTCG+AGG | 0.552658 | 1_3:-2905185 | Msa0097090:CDS |
| ACCTGAATAACAAGAAGAGA+TGG | 0.554613 | 1_3:+2904720 | None:intergenic |
| GCAGGACAAAGCAACATGGC+TGG | 0.563412 | 1_3:-2905191 | Msa0097090:CDS |
| CTCGTCCCACCAACTGCACA+AGG | 0.564466 | 1_3:+2904945 | None:intergenic |
| TGAAGGGTATAAATATAGAA+TGG | 0.568134 | 1_3:-2904781 | Msa0097090:CDS |
| TGCAGGTAGCACTTGCATCA+GGG | 0.569182 | 1_3:-2902472 | Msa0097090:intron |
| AATGAAATTGTTAGAATGAG+TGG | 0.572648 | 1_3:-2904993 | Msa0097090:CDS |
| GGAAGGCAAGTTTATAGAGA+AGG | 0.575658 | 1_3:-2902450 | Msa0097090:CDS |
| GCAGGTAGCACTTGCATCAG+GGG | 0.585921 | 1_3:-2902471 | Msa0097090:intron |
| ACATCTATATCTGCATGAAG+AGG | 0.586139 | 1_3:+2905056 | None:intergenic |
| GTGGGACGAGAATTGAAGAG+TGG | 0.589128 | 1_3:-2904932 | Msa0097090:CDS |
| GAACCTCAGACATTGTGGTA+AGG | 0.594017 | 1_3:+2902342 | None:intergenic |
| TAAATGAACCTCAGACATTG+TGG | 0.604324 | 1_3:+2902337 | None:intergenic |
| GTAAGAGAAGAAGATGCTGA+AGG | 0.605787 | 1_3:-2904798 | Msa0097090:CDS |
| GTCAAATGTGTTGATGCTAA+GGG | 0.607569 | 1_3:-2902392 | Msa0097090:CDS |
| TCTATTGAATCGGTTAAGGA+TGG | 0.608408 | 1_3:-2904870 | Msa0097090:CDS |
| TCACCTTACCACAATGTCTG+AGG | 0.609569 | 1_3:-2902345 | Msa0097090:CDS |
| GTAGCACTTGCATCAGGGGA+AGG | 0.611333 | 1_3:-2902467 | Msa0097090:CDS |
| TAAGAGAAGAAGATGCTGAA+GGG | 0.611896 | 1_3:-2904797 | Msa0097090:CDS |
| AGCAACATGGCTGGTCGAGG+AGG | 0.627227 | 1_3:-2905182 | Msa0097090:CDS |
| TCATTTGCAAAAGCAAACCC+GGG | 0.638917 | 1_3:+2905011 | None:intergenic |
| GAATCGGTTAAGGATGGTGA+TGG | 0.647703 | 1_3:-2904864 | Msa0097090:CDS |
| GTTGTAACATTACCCCATTG+TGG | 0.661318 | 1_3:-2905242 | Msa0097090:CDS |
| ATTAGCAGGACAAAGCAACA+TGG | 0.671081 | 1_3:-2905195 | Msa0097090:CDS |
| TTAGTTGCTTTGCCACAATG+GGG | 0.682804 | 1_3:+2905230 | None:intergenic |
| GAAATTGTTAGAATGAGTGG+TGG | 0.705762 | 1_3:-2904990 | Msa0097090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTTTTTTAATTTAAAATTT+TGG | - | chr1_3:2903104-2903123 | Msa0097090:intron | 10.0% |
| !! | GTTAAAAAACAAAAAATTAT+AGG | - | chr1_3:2903680-2903699 | Msa0097090:intron | 10.0% |
| !! | AATTCTCTTATAAAAAATAA+TGG | + | chr1_3:2904054-2904073 | None:intergenic | 10.0% |
| !! | AATACAAAATTTATAACTAA+TGG | - | chr1_3:2904196-2904215 | Msa0097090:intron | 10.0% |
| !!! | TTTTAAATTTATGCATTTTA+CGG | + | chr1_3:2904851-2904870 | None:intergenic | 10.0% |
| !!! | TATTTAGCTTTAAAATTGAT+GGG | + | chr1_3:2902350-2902369 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCATTTTTTTGT+TGG | - | chr1_3:2902790-2902809 | Msa0097090:intron | 15.0% |
| !! | GGAAAAAAAGTAATTAATAT+TGG | + | chr1_3:2903278-2903297 | None:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | chr1_3:2903299-2903318 | None:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | chr1_3:2903300-2903319 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | chr1_3:2903424-2903443 | None:intergenic | 15.0% |
| !!! | TAAATTTTGAATCATTAACA+AGG | - | chr1_3:2903546-2903565 | Msa0097090:intron | 15.0% |
| !! | TATTATTAAACAGATTAGAA+CGG | + | chr1_3:2903825-2903844 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAGTTTTTTAAC+AGG | + | chr1_3:2903992-2904011 | None:intergenic | 15.0% |
| !! | AAAATGAAATAGTACTTATA+CGG | - | chr1_3:2904247-2904266 | Msa0097090:intron | 15.0% |
| !! | TTGACTAATAAGAAAATTTA+AGG | - | chr1_3:2904363-2904382 | Msa0097090:intron | 15.0% |
| !! | AACAATGTATAATATATGTA+AGG | - | chr1_3:2904586-2904605 | Msa0097090:intron | 15.0% |
| !!! | TTTAAAATGATAAAGTTAAG+AGG | - | chr1_3:2904721-2904740 | Msa0097090:intron | 15.0% |
| !!! | GTATTTAGCTTTAAAATTGA+TGG | + | chr1_3:2902351-2902370 | None:intergenic | 20.0% |
| !! | ATCACATTTGTATAATGAAT+TGG | - | chr1_3:2902554-2902573 | Msa0097090:intron | 20.0% |
| !! | AGAATTTAATTGAGAATCTT+AGG | - | chr1_3:2902697-2902716 | Msa0097090:intron | 20.0% |
| !! | TTATATTTGATATTCCAGAT+GGG | + | chr1_3:2902849-2902868 | None:intergenic | 20.0% |
| !!! | GAAATTTGAAATTCGAATAT+AGG | + | chr1_3:2903047-2903066 | None:intergenic | 20.0% |
| !!! | CTTTTTTGATGGATAATTAT+GGG | + | chr1_3:2903137-2903156 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGATGGATAATTA+TGG | + | chr1_3:2903138-2903157 | None:intergenic | 20.0% |
| !! | AATTATCCATCAAAAAAGTT+TGG | - | chr1_3:2903139-2903158 | Msa0097090:intron | 20.0% |
| !! | ATTATCCATCAAAAAAGTTT+GGG | - | chr1_3:2903140-2903159 | Msa0097090:intron | 20.0% |
| !! | ATTATTAAACAGATTAGAAC+GGG | + | chr1_3:2903824-2903843 | None:intergenic | 20.0% |
| !!! | GATTTTTCAATAATGAAATG+AGG | - | chr1_3:2903862-2903881 | Msa0097090:intron | 20.0% |
| !!! | GTTCTGTTTTCAATAATAAA+GGG | + | chr1_3:2903910-2903929 | None:intergenic | 20.0% |
| !!! | AGTTCTGTTTTCAATAATAA+AGG | + | chr1_3:2903911-2903930 | None:intergenic | 20.0% |
| !!! | AACTTTTTCTTTTTGTACAT+TGG | - | chr1_3:2903959-2903978 | Msa0097090:intron | 20.0% |
| !! | ATTGATGAAGAAAAAAACAT+AGG | + | chr1_3:2904504-2904523 | None:intergenic | 20.0% |
| !!! | ATATATGCCTTTGTATTTTT+TGG | + | chr1_3:2904637-2904656 | None:intergenic | 20.0% |
| !! | AATAAAGCAACAAATAATCA+CGG | - | chr1_3:2904745-2904764 | Msa0097090:CDS | 20.0% |
| !! | CATAAAAATAATTTAAGTGG+TGG | + | chr1_3:2904965-2904984 | None:intergenic | 20.0% |
| !! | CTGCATAAAAATAATTTAAG+TGG | + | chr1_3:2904968-2904987 | None:intergenic | 20.0% |
| !!! | CACTTAAATTATTTTTATGC+AGG | - | chr1_3:2904966-2904985 | Msa0097090:CDS | 20.0% |
| !! | CTTGTGTATAATTAAATTGA+TGG | + | chr1_3:2905182-2905201 | None:intergenic | 20.0% |
| ! | ATTAGCTCCATTATTAATGT+TGG | + | chr1_3:2902159-2902178 | None:intergenic | 25.0% |
| !! | AAAGACATTTTCATATTAGC+AGG | - | chr1_3:2902246-2902265 | Msa0097090:three_prime_UTR | 25.0% |
| !!! | AGGTGTTTTAAATGGAAAAT+GGG | - | chr1_3:2902293-2902312 | Msa0097090:CDS | 25.0% |
| ! | AGCTAAATACAAAACTCAAA+TGG | - | chr1_3:2902361-2902380 | Msa0097090:CDS | 25.0% |
| ! | GCTAAATACAAAACTCAAAT+GGG | - | chr1_3:2902362-2902381 | Msa0097090:CDS | 25.0% |
| ! | AATGAAATTGTTAGAATGAG+TGG | - | chr1_3:2902462-2902481 | Msa0097090:CDS | 25.0% |
| !! | TGAAGGGTATAAATATAGAA+TGG | - | chr1_3:2902674-2902693 | Msa0097090:intron | 25.0% |
| ! | CTTATATTTGATATTCCAGA+TGG | + | chr1_3:2902850-2902869 | None:intergenic | 25.0% |
| !! | TTCAACTTTTCTATGTAGAT+TGG | + | chr1_3:2902994-2903013 | None:intergenic | 25.0% |
| ! | TGAAAATCTTAAAAGAAGAC+AGG | - | chr1_3:2903010-2903029 | Msa0097090:intron | 25.0% |
| ! | GTAAATGACTCAGTTATTAT+GGG | + | chr1_3:2903209-2903228 | None:intergenic | 25.0% |
| ! | TGTAAATGACTCAGTTATTA+TGG | + | chr1_3:2903210-2903229 | None:intergenic | 25.0% |
| ! | AGTGGAATATGTATTGAATT+GGG | + | chr1_3:2903335-2903354 | None:intergenic | 25.0% |
| ! | AAGTGGAATATGTATTGAAT+TGG | + | chr1_3:2903336-2903355 | None:intergenic | 25.0% |
| !! | TAAGTGCTTTTGTTAAGTAT+TGG | + | chr1_3:2903384-2903403 | None:intergenic | 25.0% |
| ! | AGCATGATTCGAAAAATTTA+TGG | - | chr1_3:2903591-2903610 | Msa0097090:intron | 25.0% |
| ! | ATGATTCGAAAAATTTATGG+AGG | - | chr1_3:2903594-2903613 | Msa0097090:intron | 25.0% |
| ! | AGTAGTTTAACAAATTGACA+AGG | - | chr1_3:2903624-2903643 | Msa0097090:intron | 25.0% |
| ! | GTAGTTTAACAAATTGACAA+GGG | - | chr1_3:2903625-2903644 | Msa0097090:intron | 25.0% |
| ! | TTCTCTTAATCAATGTCTTA+AGG | - | chr1_3:2903736-2903755 | Msa0097090:intron | 25.0% |
| ! | TCTCTTAATCAATGTCTTAA+GGG | - | chr1_3:2903737-2903756 | Msa0097090:intron | 25.0% |
| ! | GAAAAAGTAGATTGAGATAA+TGG | + | chr1_3:2904029-2904048 | None:intergenic | 25.0% |
| !!! | GTCAAATAGTTGTTGTTTTT+TGG | + | chr1_3:2904164-2904183 | None:intergenic | 25.0% |
| ! | ACTTATACGGTATAAATATG+TGG | - | chr1_3:2904260-2904279 | Msa0097090:intron | 25.0% |
| !!! | AATTCTCGCTTTTACTTAAT+TGG | + | chr1_3:2904452-2904471 | None:intergenic | 25.0% |
| ! | TGTATAATATATGTAAGGTC+TGG | - | chr1_3:2904591-2904610 | Msa0097090:intron | 25.0% |
| ! | CATATATATCCTAACTAAGT+TGG | - | chr1_3:2904650-2904669 | Msa0097090:intron | 25.0% |
| ! | ATTCTTGCTAATTGGATTAT+TGG | + | chr1_3:2904678-2904697 | None:intergenic | 25.0% |
| !! | ATAATTAAATTGATGGCTGT+TGG | + | chr1_3:2905175-2905194 | None:intergenic | 25.0% |
| !!! | GAAAATGTGTGTTGGTTTTT+AGG | + | chr1_3:2902129-2902148 | None:intergenic | 30.0% |
| CATTATTAATGTTGGAGCTA+AGG | + | chr1_3:2902151-2902170 | None:intergenic | 30.0% | |
| CTTAGCTCCAACATTAATAA+TGG | - | chr1_3:2902149-2902168 | Msa0097090:three_prime_UTR | 30.0% | |
| !! | GTCAATGTTTTTGTGTGTTT+TGG | - | chr1_3:2902191-2902210 | Msa0097090:three_prime_UTR | 30.0% |
| !! | GAGGTGTTTTAAATGGAAAA+TGG | - | chr1_3:2902292-2902311 | Msa0097090:CDS | 30.0% |
| !! | GTTTTAAATGGAAAATGGGA+TGG | - | chr1_3:2902297-2902316 | Msa0097090:CDS | 30.0% |
| ATAGATGTAGGAAAAACTTG+TGG | - | chr1_3:2902414-2902433 | Msa0097090:CDS | 30.0% | |
| AAGATCTATTGAATCGGTTA+AGG | - | chr1_3:2902581-2902600 | Msa0097090:intron | 30.0% | |
| ! | GTGTAATTAGAGCAGTTTTA+TGG | - | chr1_3:2902613-2902632 | Msa0097090:intron | 30.0% |
| !!! | GTTTGCGTTTTTTAGTGTAT+TGG | - | chr1_3:2902956-2902975 | Msa0097090:intron | 30.0% |
| AATCTTAAAAGAAGACAGGA+AGG | - | chr1_3:2903014-2903033 | Msa0097090:intron | 30.0% | |
| ATCTTAAAAGAAGACAGGAA+GGG | - | chr1_3:2903015-2903034 | Msa0097090:intron | 30.0% | |
| CCACTATCATAAATACAAAG+TGG | + | chr1_3:2903353-2903372 | None:intergenic | 30.0% | |
| CCACTTTGTATTTATGATAG+TGG | - | chr1_3:2903350-2903369 | Msa0097090:intron | 30.0% | |
| AAATGAAGGAGAGAGAAAAA+TGG | + | chr1_3:2903410-2903429 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAACAAGTGCTCTT+AGG | + | chr1_3:2903670-2903689 | None:intergenic | 30.0% |
| ! | ATGTTATCTTGACAACCTTT+TGG | + | chr1_3:2904296-2904315 | None:intergenic | 30.0% |
| !!! | TATGCCTTTGTATTTTTTGG+TGG | + | chr1_3:2904634-2904653 | None:intergenic | 30.0% |
| TTATTGGTACCAACTTAGTT+AGG | + | chr1_3:2904662-2904681 | None:intergenic | 30.0% | |
| TGCTTTCAATTCTTGCTAAT+TGG | + | chr1_3:2904686-2904705 | None:intergenic | 30.0% | |
| CCATCTTCATATCAATCAAA+GGG | + | chr1_3:2904790-2904809 | None:intergenic | 30.0% | |
| CCTTTGATTGATATGAAGAT+GGG | - | chr1_3:2904788-2904807 | Msa0097090:CDS | 30.0% | |
| ! | TTTTACGGTATGCAATCAAT+TGG | + | chr1_3:2904836-2904855 | None:intergenic | 30.0% |
| ATTTACATGACAAGCTAAGT+AGG | - | chr1_3:2905220-2905239 | Msa0097090:CDS | 30.0% | |
| !!! | CACATTTTGACTTGGTAAAT+TGG | - | chr1_3:2905307-2905326 | Msa0097090:CDS | 30.0% |
| !! | GTTTTTAGGCATATGGAAGA+GGG | + | chr1_3:2902115-2902134 | None:intergenic | 35.0% |
| !!! | TGTGTTGGTTTTTAGGCATA+TGG | + | chr1_3:2902122-2902141 | None:intergenic | 35.0% |
| ! | TTTAGTTGCTTTGCCACAAT+GGG | + | chr1_3:2902229-2902248 | None:intergenic | 35.0% |
| !! | AGCTTTAAAATTGATGGGCT+TGG | + | chr1_3:2902345-2902364 | None:intergenic | 35.0% |
| ACATCTATATCTGCATGAAG+AGG | + | chr1_3:2902402-2902421 | None:intergenic | 35.0% | |
| CTTCATGCAGATATAGATGT+AGG | - | chr1_3:2902402-2902421 | Msa0097090:CDS | 35.0% | |
| TTCATTTGCAAAAGCAAACC+CGG | + | chr1_3:2902448-2902467 | None:intergenic | 35.0% | |
| GAAATTGTTAGAATGAGTGG+TGG | - | chr1_3:2902465-2902484 | Msa0097090:CDS | 35.0% | |
| AGAATTGAAGAGTGGAGAAA+TGG | - | chr1_3:2902531-2902550 | Msa0097090:intron | 35.0% | |
| GGTGAGAAGATCTATTGAAT+CGG | - | chr1_3:2902575-2902594 | Msa0097090:intron | 35.0% | |
| TCTATTGAATCGGTTAAGGA+TGG | - | chr1_3:2902585-2902604 | Msa0097090:intron | 35.0% | |
| !! | AGAGCAGTTTTATGGTATCA+AGG | - | chr1_3:2902621-2902640 | Msa0097090:intron | 35.0% |
| TAAGAGAAGAAGATGCTGAA+GGG | - | chr1_3:2902658-2902677 | Msa0097090:intron | 35.0% | |
| !! | TCCATCTCTTCTTGTTATTC+AGG | - | chr1_3:2902734-2902753 | Msa0097090:intron | 35.0% |
| ACCTGAATAACAAGAAGAGA+TGG | + | chr1_3:2902738-2902757 | None:intergenic | 35.0% | |
| GCGTGATGAATGTAAATGAT+AGG | - | chr1_3:2903073-2903092 | Msa0097090:intron | 35.0% | |
| !!! | CGTTTCCCAAACTTTTTTGA+TGG | + | chr1_3:2903148-2903167 | None:intergenic | 35.0% |
| ATGACTCAGTTATTATGGGA+CGG | + | chr1_3:2903205-2903224 | None:intergenic | 35.0% | |
| !!! | GTGCTTTTGTTAAGTATTGG+TGG | + | chr1_3:2903381-2903400 | None:intergenic | 35.0% |
| ATATGTGTGAAATGAGCTAG+CGG | - | chr1_3:2903444-2903463 | Msa0097090:intron | 35.0% | |
| TAATCAATGTCTTAAGGGCA+CGG | - | chr1_3:2903742-2903761 | Msa0097090:intron | 35.0% | |
| ACGGTATAAATATGTGGTGT+TGG | - | chr1_3:2904266-2904285 | Msa0097090:intron | 35.0% | |
| !!! | TTGTATTTTTTGGTGGTGTC+TGG | + | chr1_3:2904627-2904646 | None:intergenic | 35.0% |
| GACACCACCAAAAAATACAA+AGG | - | chr1_3:2904627-2904646 | Msa0097090:intron | 35.0% | |
| CCCTTTGATTGATATGAAGA+TGG | - | chr1_3:2904787-2904806 | Msa0097090:CDS | 35.0% | |
| CCCATCTTCATATCAATCAA+AGG | + | chr1_3:2904791-2904810 | None:intergenic | 35.0% | |
| GCATCAACACATTTGACATT+AGG | + | chr1_3:2905060-2905079 | None:intergenic | 35.0% | |
| ! | TGTCAAATGTGTTGATGCTA+AGG | - | chr1_3:2905062-2905081 | Msa0097090:CDS | 35.0% |
| ! | GTCAAATGTGTTGATGCTAA+GGG | - | chr1_3:2905063-2905082 | Msa0097090:CDS | 35.0% |
| TAAATGAACCTCAGACATTG+TGG | + | chr1_3:2905121-2905140 | None:intergenic | 35.0% | |
| ! | ACAATGTCTGAGGTTCATTT+AGG | - | chr1_3:2905120-2905139 | Msa0097090:CDS | 35.0% |
| !!! | GAACAACTCACATTTTGACT+TGG | - | chr1_3:2905299-2905318 | Msa0097090:CDS | 35.0% |
| !! | GGTTTTTAGGCATATGGAAG+AGG | + | chr1_3:2902116-2902135 | None:intergenic | 40.0% |
| GAGCTAAGGAAAATGTGTGT+TGG | + | chr1_3:2902137-2902156 | None:intergenic | 40.0% | |
| GTTGTAACATTACCCCATTG+TGG | - | chr1_3:2902213-2902232 | Msa0097090:three_prime_UTR | 40.0% | |
| ! | TTAGTTGCTTTGCCACAATG+GGG | + | chr1_3:2902228-2902247 | None:intergenic | 40.0% |
| ! | CTTTAGTTGCTTTGCCACAA+TGG | + | chr1_3:2902230-2902249 | None:intergenic | 40.0% |
| ATTAGCAGGACAAAGCAACA+TGG | - | chr1_3:2902260-2902279 | Msa0097090:exon | 40.0% | |
| GTAGGAAAAACTTGTGGTGT+TGG | - | chr1_3:2902420-2902439 | Msa0097090:CDS | 40.0% | |
| TCATTTGCAAAAGCAAACCC+GGG | + | chr1_3:2902447-2902466 | None:intergenic | 40.0% | |
| ! | AGTGGTGGTGAATGTGTTAT+AGG | - | chr1_3:2902480-2902499 | Msa0097090:intron | 40.0% |
| GTAAGAGAAGAAGATGCTGA+AGG | - | chr1_3:2902657-2902676 | Msa0097090:intron | 40.0% | |
| TCTTGATACATTCACCCATC+TGG | - | chr1_3:2902832-2902851 | Msa0097090:intron | 40.0% | |
| AGCTAGCGGCTCAATTAATT+CGG | - | chr1_3:2903458-2903477 | Msa0097090:intron | 40.0% | |
| CAAGTTGTCACGTTTGTCAA+TGG | + | chr1_3:2903780-2903799 | None:intergenic | 40.0% | |
| TGTGCAAGTTGTGATAGACA+CGG | - | chr1_3:2904524-2904543 | Msa0097090:intron | 40.0% | |
| CAAATAATCACGGTGCAACA+TGG | - | chr1_3:2904755-2904774 | Msa0097090:CDS | 40.0% | |
| GGAAGGCAAGTTTATAGAGA+AGG | - | chr1_3:2905005-2905024 | Msa0097090:CDS | 40.0% | |
| AAGGTGAGACATGCTCAATT+GGG | - | chr1_3:2905024-2905043 | Msa0097090:CDS | 40.0% | |
| CATTTGTCAGTCGCACAATT+CGG | - | chr1_3:2905259-2905278 | Msa0097090:CDS | 40.0% | |
| !!! | GGTCGAGGAGGTGTTTTAAA+TGG | - | chr1_3:2902285-2902304 | Msa0097090:CDS | 45.0% |
| ! | AAAACTTGTGGTGTTGGACC+CGG | - | chr1_3:2902426-2902445 | Msa0097090:CDS | 45.0% |
| TTGTTCCTTGTGCAGTTGGT+GGG | - | chr1_3:2902505-2902524 | Msa0097090:intron | 45.0% | |
| GAATCGGTTAAGGATGGTGA+TGG | - | chr1_3:2902591-2902610 | Msa0097090:intron | 45.0% | |
| CTCAGTTATTATGGGACGGA+GGG | + | chr1_3:2903201-2903220 | None:intergenic | 45.0% | |
| ACTCAGTTATTATGGGACGG+AGG | + | chr1_3:2903202-2903221 | None:intergenic | 45.0% | |
| GCGGCTCAATTAATTCGGAA+CGG | - | chr1_3:2903463-2903482 | Msa0097090:intron | 45.0% | |
| CGGCTCAATTAATTCGGAAC+GGG | - | chr1_3:2903464-2903483 | Msa0097090:intron | 45.0% | |
| ! | TGTGGTGTTGGACAACCAAA+AGG | - | chr1_3:2904278-2904297 | Msa0097090:intron | 45.0% |
| GTGCAAGTTGTGATAGACAC+GGG | - | chr1_3:2904525-2904544 | Msa0097090:intron | 45.0% | |
| GAAGGTGAGACATGCTCAAT+TGG | - | chr1_3:2905023-2905042 | Msa0097090:CDS | 45.0% | |
| TCACCTTACCACAATGTCTG+AGG | - | chr1_3:2905110-2905129 | Msa0097090:CDS | 45.0% | |
| GAACCTCAGACATTGTGGTA+AGG | + | chr1_3:2905116-2905135 | None:intergenic | 45.0% | |
| ATGGCTGTTGGAAGCGAAAT+AGG | + | chr1_3:2905163-2905182 | None:intergenic | 45.0% | |
| !!! | TAAATTTTGTATTTTTATAT+TGG | + | chr1_3:2904189-2904208 | None:intergenic | 5.0% |
| !! | GGCTTGGTTTGCATTCTGGT+GGG | + | chr1_3:2902329-2902348 | None:intergenic | 50.0% |
| !! | GATGGGCTTGGTTTGCATTC+TGG | + | chr1_3:2902333-2902352 | None:intergenic | 50.0% |
| ! | AAACTTGTGGTGTTGGACCC+GGG | - | chr1_3:2902427-2902446 | Msa0097090:CDS | 50.0% |
| !! | GGTCTTGTTCCTTGTGCAGT+TGG | - | chr1_3:2902501-2902520 | Msa0097090:intron | 50.0% |
| CTTGTTCCTTGTGCAGTTGG+TGG | - | chr1_3:2902504-2902523 | Msa0097090:intron | 50.0% | |
| GTGGGACGAGAATTGAAGAG+TGG | - | chr1_3:2902523-2902542 | Msa0097090:intron | 50.0% | |
| ATGCAGGTAGCACTTGCATC+AGG | - | chr1_3:2904982-2905001 | Msa0097090:CDS | 50.0% | |
| TGCAGGTAGCACTTGCATCA+GGG | - | chr1_3:2904983-2905002 | Msa0097090:CDS | 50.0% | |
| GCAGGACAAAGCAACATGGC+TGG | - | chr1_3:2902264-2902283 | Msa0097090:exon | 55.0% | |
| ! | CAAAGCAACATGGCTGGTCG+AGG | - | chr1_3:2902270-2902289 | Msa0097090:CDS | 55.0% |
| !! | GGGCTTGGTTTGCATTCTGG+TGG | + | chr1_3:2902330-2902349 | None:intergenic | 55.0% |
| CCAACTGAGCTGAGCTCGTA+GGG | + | chr1_3:2904562-2904581 | None:intergenic | 55.0% | |
| ACCAACTGAGCTGAGCTCGT+AGG | + | chr1_3:2904563-2904582 | None:intergenic | 55.0% | |
| CACGGTGCAACATGGAGTCA+TGG | - | chr1_3:2904763-2904782 | Msa0097090:CDS | 55.0% | |
| GCAGGTAGCACTTGCATCAG+GGG | - | chr1_3:2904984-2905003 | Msa0097090:CDS | 55.0% | |
| GTAGCACTTGCATCAGGGGA+AGG | - | chr1_3:2904988-2905007 | Msa0097090:CDS | 55.0% | |
| ! | AGCAACATGGCTGGTCGAGG+AGG | - | chr1_3:2902273-2902292 | Msa0097090:CDS | 60.0% |
| CTCGTCCCACCAACTGCACA+AGG | + | chr1_3:2902513-2902532 | None:intergenic | 60.0% | |
| CCCTACGAGCTCAGCTCAGT+TGG | - | chr1_3:2904559-2904578 | Msa0097090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2902102 | 2905375 | 2902102 | ID=Msa0097090;Name=Msa0097090 |
| chr1_3 | mRNA | 2902102 | 2905375 | 2902102 | ID=Msa0097090-mRNA-1;Parent=Msa0097090;Name=Msa0097090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=21|1|1|1|1|1|2|166|284 |
| chr1_3 | exon | 2902102 | 2902489 | 2902102 | ID=Msa0097090-mRNA-1:exon:820;Parent=Msa0097090-mRNA-1 |
| chr1_3 | exon | 2904722 | 2905375 | 2904722 | ID=Msa0097090-mRNA-1:exon:819;Parent=Msa0097090-mRNA-1 |
| chr1_3 | five_prime_UTR | 2905355 | 2905375 | 2905355 | ID=Msa0097090-mRNA-1:five_prime_utr;Parent=Msa0097090-mRNA-1 |
| chr1_3 | CDS | 2904722 | 2905354 | 2904722 | ID=Msa0097090-mRNA-1:cds;Parent=Msa0097090-mRNA-1 |
| chr1_3 | CDS | 2902268 | 2902489 | 2902268 | ID=Msa0097090-mRNA-1:cds;Parent=Msa0097090-mRNA-1 |
| chr1_3 | three_prime_UTR | 2902102 | 2902267 | 2902102 | ID=Msa0097090-mRNA-1:three_prime_utr;Parent=Msa0097090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
