Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333070 | XP_039686637.1 | 95.699 | 279 | 11 | 1 | 4 | 281 | 38 | 316 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333070 | sp|Q9LKA0|IQD10_ARATH | 59.184 | 196 | 75 | 2 | 15 | 208 | 27 | 219 | 6.36e-80 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052380 | Msa0333070 | 0.801559 | 8.504655e-49 | -8.615850e-47 |
| Msa0097090 | Msa0333070 | 0.809525 | 1.812701e-50 | -8.615850e-47 |
| Msa0186640 | Msa0333070 | 0.806059 | 9.883822e-50 | -8.615850e-47 |
| Msa0199960 | Msa0333070 | 0.871170 | 8.376764e-67 | -8.615850e-47 |
| Msa0228250 | Msa0333070 | 0.846153 | 2.597518e-59 | -8.615850e-47 |
| Msa0242490 | Msa0333070 | 0.869565 | 2.814725e-66 | -8.615850e-47 |
| Msa0243600 | Msa0333070 | 0.843340 | 1.488443e-58 | -8.615850e-47 |
| Msa0255620 | Msa0333070 | 0.864570 | 1.105930e-64 | -8.615850e-47 |
| Msa0280690 | Msa0333070 | 0.861595 | 9.188577e-64 | -8.615850e-47 |
| Msa0282220 | Msa0333070 | 0.839222 | 1.802619e-57 | -8.615850e-47 |
| Msa0294720 | Msa0333070 | 0.828439 | 8.983529e-55 | -8.615850e-47 |
| Msa0319940 | Msa0333070 | 0.832211 | 1.076150e-55 | -8.615850e-47 |
| Msa0333070 | Msa0365530 | 0.838185 | 3.340812e-57 | -8.615850e-47 |
| Msa0333070 | Msa0389880 | 0.830226 | 3.307885e-55 | -8.615850e-47 |
| Msa0333070 | Msa0458480 | 0.848022 | 7.984039e-60 | -8.615850e-47 |
| Msa0333070 | Msa0505110 | 0.859788 | 3.245885e-63 | -8.615850e-47 |
| Msa0333070 | Msa0505140 | 0.838568 | 2.661270e-57 | -8.615850e-47 |
| Msa0333070 | Msa0564950 | 0.819536 | 1.102950e-52 | -8.615850e-47 |
| Msa0333070 | Msa0580580 | 0.813962 | 1.962890e-51 | -8.615850e-47 |
| Msa0333070 | Msa0618050 | 0.803643 | 3.161179e-49 | -8.615850e-47 |
| Msa0333070 | Msa0642950 | 0.820442 | 6.843299e-53 | -8.615850e-47 |
| Msa0333070 | Msa0704510 | 0.803495 | 3.391769e-49 | -8.615850e-47 |
| Msa0333070 | Msa0712590 | 0.814290 | 1.660908e-51 | -8.615850e-47 |
| Msa0333070 | Msa0720910 | 0.801327 | 9.486498e-49 | -8.615850e-47 |
| Msa0333070 | Msa0752940 | 0.810691 | 1.016344e-50 | -8.615850e-47 |
| Msa0333070 | Msa0804360 | 0.801648 | 8.155635e-49 | -8.615850e-47 |
| Msa0333070 | Msa1024740 | 0.814757 | 1.309159e-51 | -8.615850e-47 |
| Msa0333070 | Msa1037550 | 0.834600 | 2.729020e-56 | -8.615850e-47 |
| Msa0333070 | Msa1063500 | 0.800886 | 1.167624e-48 | -8.615850e-47 |
| Msa0333070 | Msa1108790 | 0.813809 | 2.120793e-51 | -8.615850e-47 |
| Msa0333070 | Msa1130430 | 0.804197 | 2.425384e-49 | -8.615850e-47 |
| Msa0333070 | Msa1199270 | 0.808361 | 3.216289e-50 | -8.615850e-47 |
| Msa0333070 | Msa1222590 | 0.803868 | 2.838254e-49 | -8.615850e-47 |
| Msa0333070 | Msa1340700 | 0.810751 | 9.864568e-51 | -8.615850e-47 |
| Msa0333070 | Msa1349550 | 0.809494 | 1.840964e-50 | -8.615850e-47 |
| Msa0333070 | Msa1430750 | 0.802234 | 6.179574e-49 | -8.615850e-47 |
| Msa0333070 | Msa1436420 | 0.834447 | 2.981386e-56 | -8.615850e-47 |
| Msa0333070 | Msa1457510 | 0.803566 | 3.279716e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333070 | MtrunA17_Chr2g0316401 | 95.699 | 279 | 11 | 1 | 4 | 281 | 38 | 316 | 0.0 | 555 |
| Msa0333070 | MtrunA17_Chr2g0283321 | 53.540 | 226 | 100 | 4 | 37 | 261 | 61 | 282 | 6.91e-77 | 235 |
| Msa0333070 | MtrunA17_Chr4g0025441 | 43.636 | 165 | 93 | 0 | 41 | 205 | 98 | 262 | 1.29e-34 | 129 |
| Msa0333070 | MtrunA17_Chr1g0200161 | 37.427 | 171 | 97 | 4 | 40 | 203 | 142 | 309 | 3.50e-30 | 118 |
| Msa0333070 | MtrunA17_Chr6g0462191 | 36.517 | 178 | 102 | 4 | 33 | 203 | 101 | 274 | 3.29e-29 | 114 |
| Msa0333070 | MtrunA17_Chr1g0181581 | 35.260 | 173 | 102 | 3 | 32 | 199 | 109 | 276 | 3.48e-27 | 109 |
| Msa0333070 | MtrunA17_Chr7g0263731 | 35.754 | 179 | 110 | 2 | 40 | 217 | 109 | 283 | 1.43e-25 | 105 |
| Msa0333070 | MtrunA17_Chr3g0135851 | 36.872 | 179 | 103 | 5 | 41 | 210 | 93 | 270 | 6.26e-24 | 100 |
| Msa0333070 | MtrunA17_Chr4g0045641 | 31.892 | 185 | 106 | 5 | 30 | 199 | 137 | 316 | 1.59e-20 | 90.9 |
| Msa0333070 | MtrunA17_Chr8g0346021 | 31.183 | 186 | 102 | 8 | 39 | 205 | 127 | 305 | 2.73e-16 | 78.6 |
| Msa0333070 | MtrunA17_Chr8g0342551 | 30.570 | 193 | 126 | 3 | 41 | 225 | 92 | 284 | 4.92e-15 | 74.7 |
| Msa0333070 | MtrunA17_Chr2g0330051 | 32.370 | 173 | 107 | 3 | 41 | 203 | 80 | 252 | 2.85e-12 | 66.2 |
| Msa0333070 | MtrunA17_Chr1g0146931 | 28.205 | 195 | 113 | 5 | 41 | 208 | 124 | 318 | 2.50e-11 | 63.5 |
| Msa0333070 | MtrunA17_Chr4g0020671 | 28.994 | 169 | 103 | 4 | 35 | 197 | 97 | 254 | 4.29e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333070 | AT3G15050.1 | 59.184 | 196 | 75 | 2 | 15 | 208 | 27 | 219 | 6.47e-81 | 245 |
| Msa0333070 | AT2G33990.1 | 49.500 | 200 | 96 | 3 | 41 | 237 | 49 | 246 | 1.48e-64 | 203 |
| Msa0333070 | AT3G22190.3 | 36.000 | 225 | 141 | 2 | 38 | 260 | 87 | 310 | 5.33e-33 | 125 |
| Msa0333070 | AT3G22190.2 | 36.000 | 225 | 141 | 2 | 38 | 260 | 87 | 310 | 5.33e-33 | 125 |
| Msa0333070 | AT3G22190.4 | 36.000 | 225 | 141 | 2 | 38 | 260 | 87 | 310 | 5.33e-33 | 125 |
| Msa0333070 | AT3G22190.1 | 36.000 | 225 | 141 | 2 | 38 | 260 | 87 | 310 | 5.33e-33 | 125 |
| Msa0333070 | AT2G26180.1 | 40.805 | 174 | 95 | 3 | 41 | 206 | 86 | 259 | 1.76e-31 | 121 |
| Msa0333070 | AT2G26410.2 | 35.882 | 170 | 100 | 4 | 41 | 204 | 150 | 316 | 3.87e-28 | 113 |
| Msa0333070 | AT2G26410.1 | 35.882 | 170 | 100 | 4 | 41 | 204 | 150 | 316 | 3.87e-28 | 113 |
| Msa0333070 | AT3G52290.1 | 35.057 | 174 | 108 | 3 | 32 | 203 | 101 | 271 | 7.63e-28 | 111 |
| Msa0333070 | AT5G03040.1 | 33.166 | 199 | 117 | 5 | 14 | 203 | 89 | 280 | 1.50e-26 | 108 |
| Msa0333070 | AT5G03040.3 | 33.166 | 199 | 117 | 5 | 14 | 203 | 89 | 280 | 1.50e-26 | 108 |
| Msa0333070 | AT5G03040.2 | 33.166 | 199 | 117 | 5 | 14 | 203 | 89 | 280 | 1.50e-26 | 108 |
| Msa0333070 | AT1G72670.1 | 30.952 | 210 | 133 | 4 | 7 | 206 | 57 | 264 | 5.05e-26 | 106 |
| Msa0333070 | AT3G09710.1 | 35.119 | 168 | 100 | 2 | 41 | 203 | 110 | 273 | 7.41e-26 | 106 |
| Msa0333070 | AT3G09710.2 | 33.516 | 182 | 98 | 4 | 41 | 203 | 110 | 287 | 2.96e-25 | 104 |
| Msa0333070 | AT3G59690.2 | 33.140 | 172 | 102 | 7 | 27 | 195 | 157 | 318 | 8.02e-24 | 100 |
| Msa0333070 | AT3G59690.1 | 33.140 | 172 | 102 | 7 | 27 | 195 | 157 | 318 | 8.02e-24 | 100 |
| Msa0333070 | AT1G17480.1 | 31.429 | 175 | 98 | 4 | 22 | 194 | 85 | 239 | 3.16e-22 | 95.1 |
| Msa0333070 | AT2G43680.4 | 32.044 | 181 | 91 | 8 | 27 | 195 | 310 | 470 | 7.41e-18 | 84.0 |
| Msa0333070 | AT2G43680.2 | 32.044 | 181 | 91 | 8 | 27 | 195 | 310 | 470 | 7.41e-18 | 84.0 |
| Msa0333070 | AT2G43680.3 | 32.044 | 181 | 91 | 8 | 27 | 195 | 310 | 470 | 7.41e-18 | 84.0 |
| Msa0333070 | AT2G43680.5 | 32.044 | 181 | 91 | 8 | 27 | 195 | 310 | 470 | 7.41e-18 | 84.0 |
| Msa0333070 | AT2G43680.1 | 32.044 | 181 | 91 | 8 | 27 | 195 | 311 | 471 | 7.55e-18 | 84.0 |
| Msa0333070 | AT3G49260.1 | 25.888 | 197 | 120 | 4 | 41 | 217 | 122 | 312 | 2.14e-17 | 82.0 |
| Msa0333070 | AT3G49260.4 | 25.888 | 197 | 120 | 4 | 41 | 217 | 122 | 312 | 2.14e-17 | 82.0 |
| Msa0333070 | AT3G49260.2 | 25.888 | 197 | 120 | 4 | 41 | 217 | 122 | 312 | 2.14e-17 | 82.0 |
| Msa0333070 | AT3G49260.3 | 26.263 | 198 | 119 | 4 | 41 | 217 | 122 | 313 | 3.01e-17 | 81.6 |
| Msa0333070 | AT4G00820.1 | 27.014 | 211 | 125 | 6 | 14 | 206 | 112 | 311 | 3.83e-16 | 78.6 |
| Msa0333070 | AT1G01110.2 | 24.775 | 222 | 144 | 7 | 4 | 206 | 86 | 303 | 5.80e-13 | 68.9 |
| Msa0333070 | AT4G10640.1 | 29.016 | 193 | 98 | 6 | 41 | 203 | 102 | 285 | 4.72e-11 | 63.2 |
Find 94 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCATTTCGTTCATTTA+TGG | 0.156996 | 2_4:+50604875 | Msa0333070:CDS |
| ACTATTATTCCCTTCATTTC+AGG | 0.158527 | 2_4:+50607124 | Msa0333070:three_prime_UTR |
| GCCGTTGAGTTTCTTTGTTT+TGG | 0.177224 | 2_4:-50606710 | None:intergenic |
| TTGGTTTCTTCATCTTCTTT+TGG | 0.194840 | 2_4:+50606966 | Msa0333070:three_prime_UTR |
| GTGGTTCATCTTATCTAATT+TGG | 0.248605 | 2_4:-50606746 | None:intergenic |
| GAAGAACATTTCAACATCTA+AGG | 0.257374 | 2_4:+50606062 | Msa0333070:CDS |
| CCAAACTGTAACCAGTATTT+TGG | 0.272065 | 2_4:+50606586 | Msa0333070:CDS |
| CAGCGCGCCCTTGGGAGGTT+CGG | 0.278767 | 2_4:+50606671 | Msa0333070:CDS |
| TTGCATCCTTGTTTCAGTTC+AGG | 0.300797 | 2_4:+50603496 | Msa0333070:five_prime_UTR |
| AATGAAATGAAATGATAATT+AGG | 0.309959 | 2_4:-50603474 | None:intergenic |
| CTCCATCATCAAACCTTCAT+TGG | 0.319760 | 2_4:-50604802 | None:intergenic |
| TTCATGTTCTTGCTATTAGA+AGG | 0.344320 | 2_4:+50603822 | Msa0333070:five_prime_UTR |
| CTAATTTGGTCTTCTGCTGC+TGG | 0.344502 | 2_4:-50606732 | None:intergenic |
| AGATTCTCACAAGCCAAATA+TGG | 0.346709 | 2_4:-50606999 | None:intergenic |
| TGTTGTTCCTGTTTGGTCTC+TGG | 0.347194 | 2_4:-50606125 | None:intergenic |
| GTTGGGTTGCAGCGCGCCCT+TGG | 0.356093 | 2_4:+50606662 | Msa0333070:CDS |
| GTTGTCACTCCACACTATTA+TGG | 0.371338 | 2_4:+50603342 | None:intergenic |
| TGGAGAGGACAGTTCCTTCC+AGG | 0.372133 | 2_4:+50604820 | Msa0333070:CDS |
| CTATTAGAAGGTGCACTTGA+TGG | 0.373672 | 2_4:+50603834 | Msa0333070:exon |
| CCAAAATACTGGTTACAGTT+TGG | 0.386021 | 2_4:-50606586 | None:intergenic |
| CACTTAACTACATACATTCA+TGG | 0.393069 | 2_4:+50606146 | Msa0333070:CDS |
| GGCATATGCTTTCTCTCATC+AGG | 0.394693 | 2_4:+50606482 | Msa0333070:CDS |
| ACTAAAGCTGCCATGTCAAA+TGG | 0.395308 | 2_4:+50606802 | Msa0333070:CDS |
| GAAACAGCTATCTTATTTCA+AGG | 0.401239 | 2_4:-50603802 | None:intergenic |
| TTGGGTTGCAGCGCGCCCTT+GGG | 0.409869 | 2_4:+50606663 | Msa0333070:CDS |
| ATGAAGCCTGACCAAAATAC+TGG | 0.422336 | 2_4:-50606597 | None:intergenic |
| AGTTAAGTGTTGTTCCTGTT+TGG | 0.425963 | 2_4:-50606132 | None:intergenic |
| TTGGAGCTGGATGGAACGTT+GGG | 0.427818 | 2_4:+50606645 | Msa0333070:CDS |
| TTGATTCTTCATGAGGGCTA+TGG | 0.431764 | 2_4:-50604770 | None:intergenic |
| AGCGCGCCCTTGGGAGGTTC+GGG | 0.435357 | 2_4:+50606672 | Msa0333070:CDS |
| GGCTTGTGAGAATCTATCAT+TGG | 0.440940 | 2_4:+50607007 | Msa0333070:three_prime_UTR |
| AGGGCTATGGTTCCCATTGG+AGG | 0.450209 | 2_4:-50604757 | None:intergenic |
| TCCATCATCAAACCTTCATT+GGG | 0.455643 | 2_4:-50604801 | None:intergenic |
| GACATGGCAGCTTTAGTCAA+TGG | 0.463459 | 2_4:-50606796 | None:intergenic |
| AAGAAAGCTGGGGTTGGAGC+TGG | 0.466713 | 2_4:+50606632 | Msa0333070:CDS |
| AATCACTGCTCCTGAAATGA+AGG | 0.468044 | 2_4:-50607134 | None:intergenic |
| CAGGATTAAGCAAAAGAGAT+TGG | 0.472339 | 2_4:+50606222 | Msa0333070:CDS |
| CTTTCGTTGAAACATGGTAA+TGG | 0.482595 | 2_4:+50607098 | Msa0333070:three_prime_UTR |
| CTAAAGCTGCCATGTCAAAT+GGG | 0.486923 | 2_4:+50606803 | Msa0333070:CDS |
| GCTTGTGAGAATCTATCATT+GGG | 0.491190 | 2_4:+50607008 | Msa0333070:three_prime_UTR |
| ATGAGGGCTATGGTTCCCAT+TGG | 0.494385 | 2_4:-50604760 | None:intergenic |
| AAGAACATTTCAACATCTAA+GGG | 0.495562 | 2_4:+50606063 | Msa0333070:CDS |
| GTGTTACTTGATTCTTCATG+AGG | 0.498076 | 2_4:-50604777 | None:intergenic |
| GTTGGAGCTGGATGGAACGT+TGG | 0.504247 | 2_4:+50606644 | Msa0333070:CDS |
| ATAGCCTTGGTAAAGAAAGC+TGG | 0.504499 | 2_4:+50606620 | Msa0333070:CDS |
| GGTCAGGCTTCATATAGCCT+TGG | 0.512035 | 2_4:+50606607 | Msa0333070:CDS |
| TTCACAATATTGCTGCTACT+CGG | 0.514388 | 2_4:+50604847 | Msa0333070:CDS |
| TTGGTAAAGAAAGCTGGGGT+TGG | 0.518496 | 2_4:+50606626 | Msa0333070:CDS |
| GGTTGCAGCGCGCCCTTGGG+AGG | 0.525212 | 2_4:+50606666 | Msa0333070:CDS |
| TAGCCTTGGTAAAGAAAGCT+GGG | 0.527594 | 2_4:+50606621 | Msa0333070:CDS |
| GGGCTATGGTTCCCATTGGA+GGG | 0.533590 | 2_4:-50604756 | None:intergenic |
| TCAAGTAACACTCCCAATGA+AGG | 0.535092 | 2_4:+50604789 | Msa0333070:CDS |
| TGCTAGCTTTCGTTGAAACA+TGG | 0.535564 | 2_4:+50607092 | Msa0333070:three_prime_UTR |
| ACTTGAACCCGAACCTCCCA+AGG | 0.538007 | 2_4:-50606679 | None:intergenic |
| TCCCAATGAAGGTTTGATGA+TGG | 0.538229 | 2_4:+50604800 | Msa0333070:CDS |
| CAATCTACTGAACCCTCCAA+TGG | 0.545908 | 2_4:+50604744 | Msa0333070:CDS |
| GTGCAGCGGTTCTGAAACAA+TGG | 0.546419 | 2_4:+50606398 | Msa0333070:CDS |
| ATCGCCATTAAAATCACCAT+TGG | 0.547703 | 2_4:+50606843 | Msa0333070:CDS |
| TTGTAGAGGATGATTAATGA+TGG | 0.548326 | 2_4:-50603429 | None:intergenic |
| AATCTACTGAACCCTCCAAT+GGG | 0.550183 | 2_4:+50604745 | Msa0333070:CDS |
| GACACGGAAGCTTTAGCCAA+TGG | 0.552731 | 2_4:-50606859 | None:intergenic |
| CACATGGCCAGAGACCAAAC+AGG | 0.554081 | 2_4:+50606118 | Msa0333070:CDS |
| AATGCGAAGGAGACTGAGAA+AGG | 0.557321 | 2_4:+50606883 | Msa0333070:CDS |
| ACTCTCCTTCCCATTTGACA+TGG | 0.564367 | 2_4:-50606812 | None:intergenic |
| TAAACGTATCCCAGGTGGAA+TGG | 0.564593 | 2_4:+50606376 | Msa0333070:intron |
| AGCTTCCGTGTCAAATGCGA+AGG | 0.566653 | 2_4:+50606870 | Msa0333070:CDS |
| ATCACTGCTCCTGAAATGAA+GGG | 0.571891 | 2_4:-50607133 | None:intergenic |
| AGTCTCCTTCGCATTTGACA+CGG | 0.580502 | 2_4:-50606875 | None:intergenic |
| CTGTTTGGTCTCTGGCCATG+TGG | 0.581097 | 2_4:-50606117 | None:intergenic |
| AGCTGCCATGTCAAATGGGA+AGG | 0.581376 | 2_4:+50606807 | Msa0333070:CDS |
| TGTGTATGATAACAGCAGCC+AGG | 0.581859 | 2_4:+50606203 | Msa0333070:CDS |
| CAATGGAAGAGATACTATCA+AGG | 0.583570 | 2_4:+50606415 | Msa0333070:CDS |
| AACCCCAGCTTTCTTTACCA+AGG | 0.586825 | 2_4:-50606624 | None:intergenic |
| GAAATGAAATGATAATTAGG+AGG | 0.588318 | 2_4:-50603471 | None:intergenic |
| CCAATACCTGAACTGAAACA+AGG | 0.592576 | 2_4:-50603502 | None:intergenic |
| AGCAATATTGTGAATCAACC+TGG | 0.594625 | 2_4:-50604838 | None:intergenic |
| CAAGAGGCTTACAATTGTAG+AGG | 0.612368 | 2_4:-50603443 | None:intergenic |
| AGCTTTAATTCAAGACCACA+TGG | 0.613946 | 2_4:+50606102 | Msa0333070:CDS |
| TGTTACTTGATTCTTCATGA+GGG | 0.616361 | 2_4:-50604776 | None:intergenic |
| ATGAAGGTTTGATGATGGAG+AGG | 0.619518 | 2_4:+50604805 | Msa0333070:CDS |
| TCCCAGGTGGAATGGTGCAG+CGG | 0.626788 | 2_4:+50606384 | Msa0333070:intron |
| AAGCTGGGGTTGGAGCTGGA+TGG | 0.631067 | 2_4:+50606636 | Msa0333070:CDS |
| TGATTAATGATGGATAGTAA+TGG | 0.631419 | 2_4:-50603419 | None:intergenic |
| GAGAGAGTTCCATAATAGTG+TGG | 0.631610 | 2_4:-50603351 | None:intergenic |
| CCCAAAACAAAGAAACTCAA+CGG | 0.631804 | 2_4:+50606709 | Msa0333070:CDS |
| GGCTAAGATTAATGAGCTCG+AGG | 0.640406 | 2_4:+50606264 | Msa0333070:CDS |
| ATGAGAGAAAGCATATGCCA+TGG | 0.645984 | 2_4:-50606478 | None:intergenic |
| AATCAAACGAGAGCGAGCCA+TGG | 0.651456 | 2_4:+50606461 | Msa0333070:CDS |
| ATATTGTGAATCAACCTGGA+AGG | 0.653405 | 2_4:-50604834 | None:intergenic |
| CTTGAACCCGAACCTCCCAA+GGG | 0.664743 | 2_4:-50606678 | None:intergenic |
| TAATTAGGAGGATATACAAG+AGG | 0.670643 | 2_4:-50603459 | None:intergenic |
| AGAACATTTCAACATCTAAG+GGG | 0.685065 | 2_4:+50606064 | Msa0333070:CDS |
| AGCCTTGGTAAAGAAAGCTG+GGG | 0.725570 | 2_4:+50606622 | Msa0333070:CDS |
| TGGATAGTAATGGTAAGACG+TGG | 0.744653 | 2_4:-50603409 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATGAAATGATAATT+AGG | - | chr2_4:50603477-50603496 | None:intergenic | 15.0% |
| !!! | TTCAAAAGTTTATTTTTTTG+AGG | + | chr2_4:50603881-50603900 | Msa0333070:intron | 15.0% |
| !!! | TCAAAAGTTTATTTTTTTGA+GGG | + | chr2_4:50603882-50603901 | Msa0333070:intron | 15.0% |
| !!! | ATAATTTTAAACCATTTCTT+TGG | - | chr2_4:50604182-50604201 | None:intergenic | 15.0% |
| !!! | TTTGCAAATTTTAAAGTTAA+AGG | - | chr2_4:50604278-50604297 | None:intergenic | 15.0% |
| !! | TGCATTAAATCAAATTTAAA+TGG | + | chr2_4:50605586-50605605 | Msa0333070:intron | 15.0% |
| !!! | TCAAATTTTGATTTTAAGAA+AGG | - | chr2_4:50606534-50606553 | None:intergenic | 15.0% |
| !! | CATTTCATATATGAAGAAAA+GGG | + | chr2_4:50603558-50603577 | Msa0333070:intron | 20.0% |
| !! | ATTTCATATATGAAGAAAAG+GGG | + | chr2_4:50603559-50603578 | Msa0333070:intron | 20.0% |
| !! | TATATGTGCATAGTTAATTT+GGG | + | chr2_4:50603699-50603718 | Msa0333070:intron | 20.0% |
| !! | TCATCAAACAAACATTAAAA+GGG | - | chr2_4:50604042-50604061 | None:intergenic | 20.0% |
| !! | TTCATCAAACAAACATTAAA+AGG | - | chr2_4:50604043-50604062 | None:intergenic | 20.0% |
| !!! | GGTTTAAAATTATAATCAGA+AGG | + | chr2_4:50604189-50604208 | Msa0333070:intron | 20.0% |
| !! | ATTGTCATAATACAAATTTC+TGG | + | chr2_4:50604491-50604510 | Msa0333070:intron | 20.0% |
| !! | TGTGAAAATTGTAGTAAAAA+TGG | - | chr2_4:50604935-50604954 | None:intergenic | 20.0% |
| !!! | CAAACTTAGTATTTTCATAA+GGG | - | chr2_4:50605258-50605277 | None:intergenic | 20.0% |
| !! | AAAATTCTATTTCCTTTAAG+TGG | + | chr2_4:50605307-50605326 | Msa0333070:intron | 20.0% |
| !! | ATAAAGTTCTATACTATCAA+AGG | + | chr2_4:50605445-50605464 | Msa0333070:intron | 20.0% |
| !! | AAAGTCATTATCAAAGTAAA+TGG | - | chr2_4:50605650-50605669 | None:intergenic | 20.0% |
| !!! | TTCACTTTTTTTATTACTAC+TGG | + | chr2_4:50605691-50605710 | Msa0333070:intron | 20.0% |
| !! | TTTCAAACAGTTATAAAAGA+GGG | - | chr2_4:50605820-50605839 | None:intergenic | 20.0% |
| !!! | GTTTTAAATATCCCATAATA+TGG | + | chr2_4:50605905-50605924 | Msa0333070:intron | 20.0% |
| !! | AAAATTATCTGCCATATTAT+GGG | - | chr2_4:50605919-50605938 | None:intergenic | 20.0% |
| !! | TAAAATTATCTGCCATATTA+TGG | - | chr2_4:50605920-50605939 | None:intergenic | 20.0% |
| !!! | TGATTAATGATGGATAGTAA+TGG | - | chr2_4:50603422-50603441 | None:intergenic | 25.0% |
| ! | GAAATGAAATGATAATTAGG+AGG | - | chr2_4:50603474-50603493 | None:intergenic | 25.0% |
| ! | TAAAATTGCATCAAAATCCA+AGG | - | chr2_4:50603532-50603551 | None:intergenic | 25.0% |
| !! | CCTTTTCTTCATATATGAAA+TGG | - | chr2_4:50603560-50603579 | None:intergenic | 25.0% |
| ! | CCATTTCATATATGAAGAAA+AGG | + | chr2_4:50603557-50603576 | Msa0333070:intron | 25.0% |
| ! | GTATATGTGCATAGTTAATT+TGG | + | chr2_4:50603698-50603717 | Msa0333070:intron | 25.0% |
| !!! | GATTGATTTTCAGATAGTTT+TGG | + | chr2_4:50603779-50603798 | Msa0333070:five_prime_UTR | 25.0% |
| ! | TTTGTTTGATGAACTCTTAA+CGG | + | chr2_4:50604050-50604069 | Msa0333070:intron | 25.0% |
| !! | TTTGAATATTGATGATATGC+AGG | + | chr2_4:50604124-50604143 | Msa0333070:intron | 25.0% |
| ! | TTATAATCAGAAGGAAGAAA+CGG | + | chr2_4:50604198-50604217 | Msa0333070:intron | 25.0% |
| ! | AGATAAATCAAACCAAGAAA+AGG | + | chr2_4:50604226-50604245 | Msa0333070:intron | 25.0% |
| ! | CCTGAAAGAAAATCTAAATT+AGG | - | chr2_4:50604333-50604352 | None:intergenic | 25.0% |
| !! | CCTAATTTAGATTTTCTTTC+AGG | + | chr2_4:50604330-50604349 | Msa0333070:intron | 25.0% |
| !!! | TTTTCTGTTTTAGTTGCATT+AGG | + | chr2_4:50604392-50604411 | Msa0333070:intron | 25.0% |
| !!! | TTTCTGTTTTAGTTGCATTA+GGG | + | chr2_4:50604393-50604412 | Msa0333070:intron | 25.0% |
| !!! | TTAGGGTTTTAATATGTTCT+TGG | + | chr2_4:50604410-50604429 | Msa0333070:intron | 25.0% |
| !! | AACGAAAAGTACAAATTTGA+AGG | + | chr2_4:50604629-50604648 | Msa0333070:intron | 25.0% |
| !! | ACGAAAAGTACAAATTTGAA+GGG | + | chr2_4:50604630-50604649 | Msa0333070:intron | 25.0% |
| ! | AAATGCATTTCGTTCATTTA+TGG | + | chr2_4:50604875-50604894 | Msa0333070:CDS | 25.0% |
| ! | TAAAAATCGCAAAATGCATA+AGG | - | chr2_4:50605005-50605024 | None:intergenic | 25.0% |
| !! | TTATGCATTTTGCGATTTTT+AGG | + | chr2_4:50605004-50605023 | Msa0333070:intron | 25.0% |
| !! | AGATGAGCTTTTTAATCTTA+CGG | - | chr2_4:50605066-50605085 | None:intergenic | 25.0% |
| ! | TAGTTCAAAAAACCAAAGTT+AGG | - | chr2_4:50605089-50605108 | None:intergenic | 25.0% |
| !! | GCAAACTTAGTATTTTCATA+AGG | - | chr2_4:50605259-50605278 | None:intergenic | 25.0% |
| !! | GAATATTTTGTATTTCCTCA+AGG | + | chr2_4:50605622-50605641 | Msa0333070:intron | 25.0% |
| !!! | TTGATAATGACTTTAGAACA+TGG | + | chr2_4:50605656-50605675 | Msa0333070:intron | 25.0% |
| ! | AACTTAAAGCAATTATGTTC+AGG | + | chr2_4:50605723-50605742 | Msa0333070:intron | 25.0% |
| ! | CTTTCAAACAGTTATAAAAG+AGG | - | chr2_4:50605821-50605840 | None:intergenic | 25.0% |
| ! | AAGTATAGAAAAACAGATGA+GGG | - | chr2_4:50605853-50605872 | None:intergenic | 25.0% |
| ! | TAAGTATAGAAAAACAGATG+AGG | - | chr2_4:50605854-50605873 | None:intergenic | 25.0% |
| !!! | TAATTAACTTGTTGTCAAGA+AGG | - | chr2_4:50605877-50605896 | None:intergenic | 25.0% |
| !! | AATCGACATTTCTAAAGATA+GGG | - | chr2_4:50605950-50605969 | None:intergenic | 25.0% |
| !! | AAATCGACATTTCTAAAGAT+AGG | - | chr2_4:50605951-50605970 | None:intergenic | 25.0% |
| ! | AAGAACATTTCAACATCTAA+GGG | + | chr2_4:50606063-50606082 | Msa0333070:CDS | 25.0% |
| ! | AACAGAGATAACACTTTAAA+AGG | - | chr2_4:50606322-50606341 | None:intergenic | 25.0% |
| ! | AAGTGTTATCTCTGTTATAT+TGG | + | chr2_4:50606326-50606345 | Msa0333070:intron | 25.0% |
| ! | TTAAGAAAGGATAAATCAAG+TGG | - | chr2_4:50606521-50606540 | None:intergenic | 25.0% |
| ! | AAATTTGATCACTAATGTCA+AGG | + | chr2_4:50606546-50606565 | Msa0333070:intron | 25.0% |
| !! | TTAGTCAATGGTGATTTTAA+TGG | - | chr2_4:50606787-50606806 | None:intergenic | 25.0% |
| ! | GAAAGAAAAACAAAACATGA+GGG | + | chr2_4:50606905-50606924 | Msa0333070:CDS | 25.0% |
| TTGTAGAGGATGATTAATGA+TGG | - | chr2_4:50603432-50603451 | None:intergenic | 30.0% | |
| TAATTAGGAGGATATACAAG+AGG | - | chr2_4:50603462-50603481 | None:intergenic | 30.0% | |
| ATGCAGTGTAATTCTATTTG+AGG | - | chr2_4:50603746-50603765 | None:intergenic | 30.0% | |
| AGAATTACACTGCATTAACT+TGG | + | chr2_4:50603751-50603770 | Msa0333070:intron | 30.0% | |
| ! | GAAACAGCTATCTTATTTCA+AGG | - | chr2_4:50603805-50603824 | None:intergenic | 30.0% |
| !! | TTCATGTTCTTGCTATTAGA+AGG | + | chr2_4:50603822-50603841 | Msa0333070:five_prime_UTR | 30.0% |
| TGATTTCAACTTTCAGTTTG+TGG | - | chr2_4:50603983-50604002 | None:intergenic | 30.0% | |
| ! | GAAAGGAAAAAACCTTTTCT+TGG | - | chr2_4:50604241-50604260 | None:intergenic | 30.0% |
| TTAGTTGACTAATGAGGATT+TGG | + | chr2_4:50604354-50604373 | Msa0333070:intron | 30.0% | |
| TAGTTGACTAATGAGGATTT+GGG | + | chr2_4:50604355-50604374 | Msa0333070:intron | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+TGG | + | chr2_4:50604541-50604560 | Msa0333070:intron | 30.0% |
| ! | AAGTTTTTCACCACTACTTT+TGG | - | chr2_4:50604568-50604587 | None:intergenic | 30.0% |
| ! | TAGTGGTGAAAAACTTTTGA+GGG | + | chr2_4:50604572-50604591 | Msa0333070:intron | 30.0% |
| ! | AGACGAGTCATATATGTTTT+TGG | - | chr2_4:50604657-50604676 | None:intergenic | 30.0% |
| ! | TGTTACTTGATTCTTCATGA+GGG | - | chr2_4:50604779-50604798 | None:intergenic | 30.0% |
| TTTGTGTAAACTTGATCCAA+CGG | + | chr2_4:50605130-50605149 | Msa0333070:intron | 30.0% | |
| CATGATTCCTTAACTACATA+GGG | + | chr2_4:50605179-50605198 | Msa0333070:intron | 30.0% | |
| ! | TTTTCATAAGGGTTAAGCAT+AGG | - | chr2_4:50605247-50605266 | None:intergenic | 30.0% |
| ! | ATTTTTGCTTTAGTAGACGA+AGG | - | chr2_4:50605292-50605311 | None:intergenic | 30.0% |
| AACTAGACTATCACTAAAGA+AGG | - | chr2_4:50605564-50605583 | None:intergenic | 30.0% | |
| AAAAAAAGTGAAGACACTAG+TGG | - | chr2_4:50605683-50605702 | None:intergenic | 30.0% | |
| ! | ATCGACATTTCTAAAGATAG+GGG | - | chr2_4:50605949-50605968 | None:intergenic | 30.0% |
| GAAGAACATTTCAACATCTA+AGG | + | chr2_4:50606062-50606081 | Msa0333070:CDS | 30.0% | |
| AGAACATTTCAACATCTAAG+GGG | + | chr2_4:50606064-50606083 | Msa0333070:CDS | 30.0% | |
| CACTTAACTACATACATTCA+TGG | + | chr2_4:50606146-50606165 | Msa0333070:CDS | 30.0% | |
| GGAAAGTCAGTTAAAAATTG+AGG | + | chr2_4:50606243-50606262 | Msa0333070:CDS | 30.0% | |
| GTGGTTCATCTTATCTAATT+TGG | - | chr2_4:50606749-50606768 | None:intergenic | 30.0% | |
| !! | ATGGTGATTTTGTTTCATTG+TGG | - | chr2_4:50606768-50606787 | None:intergenic | 30.0% |
| ! | TTAGCCAATGGTGATTTTAA+TGG | - | chr2_4:50606850-50606869 | None:intergenic | 30.0% |
| GGAAAGAAAAACAAAACATG+AGG | + | chr2_4:50606904-50606923 | Msa0333070:CDS | 30.0% | |
| ! | TTGGTTTCTTCATCTTCTTT+TGG | + | chr2_4:50606966-50606985 | Msa0333070:three_prime_UTR | 30.0% |
| ! | TGGTTTCTTCATCTTCTTTT+GGG | + | chr2_4:50606967-50606986 | Msa0333070:three_prime_UTR | 30.0% |
| !! | TGGGGTTTATTTTCCATATT+TGG | + | chr2_4:50606986-50607005 | Msa0333070:three_prime_UTR | 30.0% |
| ACTATTATTCCCTTCATTTC+AGG | + | chr2_4:50607124-50607143 | Msa0333070:three_prime_UTR | 30.0% | |
| CATATATGAAGAAAAGGGGT+TGG | + | chr2_4:50603563-50603582 | Msa0333070:intron | 35.0% | |
| ! | ACACTGCATTAACTTGGTTT+AGG | + | chr2_4:50603757-50603776 | Msa0333070:intron | 35.0% |
| !! | TAGCTGTTTCTCAACAAGAA+TGG | + | chr2_4:50604154-50604173 | Msa0333070:intron | 35.0% |
| !! | AGCTGTTTCTCAACAAGAAT+GGG | + | chr2_4:50604155-50604174 | Msa0333070:intron | 35.0% |
| TTGCAAACATGATGAGAGTT+TGG | + | chr2_4:50604291-50604310 | Msa0333070:intron | 35.0% | |
| !! | TCAGGATTAGTTGACTAATG+AGG | + | chr2_4:50604348-50604367 | Msa0333070:intron | 35.0% |
| AAAGTATGGACCAAAAGTAG+TGG | + | chr2_4:50604555-50604574 | Msa0333070:intron | 35.0% | |
| ! | GTAGTGGTGAAAAACTTTTG+AGG | + | chr2_4:50604571-50604590 | Msa0333070:intron | 35.0% |
| TCTCATTATGAACCTTGCTT+TGG | + | chr2_4:50604674-50604693 | Msa0333070:intron | 35.0% | |
| AAGAGAACAAGAAACAACAC+TGG | - | chr2_4:50604705-50604724 | None:intergenic | 35.0% | |
| !! | GTGTTACTTGATTCTTCATG+AGG | - | chr2_4:50604780-50604799 | None:intergenic | 35.0% |
| TCCATCATCAAACCTTCATT+GGG | - | chr2_4:50604804-50604823 | None:intergenic | 35.0% | |
| ATATTGTGAATCAACCTGGA+AGG | - | chr2_4:50604837-50604856 | None:intergenic | 35.0% | |
| AGCAATATTGTGAATCAACC+TGG | - | chr2_4:50604841-50604860 | None:intergenic | 35.0% | |
| TTCACAATATTGCTGCTACT+CGG | + | chr2_4:50604847-50604866 | Msa0333070:CDS | 35.0% | |
| AAAAGCTCATCTCCTAACTT+TGG | + | chr2_4:50605074-50605093 | Msa0333070:intron | 35.0% | |
| TTTGATGCAATCATACGATC+TGG | - | chr2_4:50605157-50605176 | None:intergenic | 35.0% | |
| CCTATGTAGTTAAGGAATCA+TGG | - | chr2_4:50605181-50605200 | None:intergenic | 35.0% | |
| CCATGATTCCTTAACTACAT+AGG | + | chr2_4:50605178-50605197 | Msa0333070:intron | 35.0% | |
| CTAGATTCCCTATGTAGTTA+AGG | - | chr2_4:50605189-50605208 | None:intergenic | 35.0% | |
| CTTAACTACATAGGGAATCT+AGG | + | chr2_4:50605187-50605206 | Msa0333070:intron | 35.0% | |
| !! | AGTTAGAAGGTACCACTTAA+AGG | - | chr2_4:50605322-50605341 | None:intergenic | 35.0% |
| TGATTGCAAGGAAAGTTAGA+AGG | - | chr2_4:50605335-50605354 | None:intergenic | 35.0% | |
| TTTCCTTGCAATCATAGACA+TGG | + | chr2_4:50605341-50605360 | Msa0333070:intron | 35.0% | |
| CAACTTAACAAAGTGACATG+AGG | + | chr2_4:50605397-50605416 | Msa0333070:intron | 35.0% | |
| TCAAAGTAAATGGTACCTTG+AGG | - | chr2_4:50605640-50605659 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCAAGACCACA+TGG | + | chr2_4:50606102-50606121 | Msa0333070:CDS | 35.0% |
| ! | AGTTAAGTGTTGTTCCTGTT+TGG | - | chr2_4:50606135-50606154 | None:intergenic | 35.0% |
| ! | CAATCTCTTTTGCTTAATCC+TGG | - | chr2_4:50606224-50606243 | None:intergenic | 35.0% |
| CAGGATTAAGCAAAAGAGAT+TGG | + | chr2_4:50606222-50606241 | Msa0333070:CDS | 35.0% | |
| ! | ACATTTTGTAAACGTATCCC+AGG | + | chr2_4:50606368-50606387 | Msa0333070:intron | 35.0% |
| CAATGGAAGAGATACTATCA+AGG | + | chr2_4:50606415-50606434 | Msa0333070:CDS | 35.0% | |
| ATGTCAAGGTAATATTGCAG+TGG | + | chr2_4:50606560-50606579 | Msa0333070:intron | 35.0% | |
| ! | CCAAAATACTGGTTACAGTT+TGG | - | chr2_4:50606589-50606608 | None:intergenic | 35.0% |
| ! | CCAAACTGTAACCAGTATTT+TGG | + | chr2_4:50606586-50606605 | Msa0333070:CDS | 35.0% |
| !!! | GTTGAGTTTCTTTGTTTTGG+GGG | - | chr2_4:50606710-50606729 | None:intergenic | 35.0% |
| !!! | CGTTGAGTTTCTTTGTTTTG+GGG | - | chr2_4:50606711-50606730 | None:intergenic | 35.0% |
| !!! | CCGTTGAGTTTCTTTGTTTT+GGG | - | chr2_4:50606712-50606731 | None:intergenic | 35.0% |
| CCCAAAACAAAGAAACTCAA+CGG | + | chr2_4:50606709-50606728 | Msa0333070:CDS | 35.0% | |
| ATCGCCATTAAAATCACCAT+TGG | + | chr2_4:50606843-50606862 | Msa0333070:CDS | 35.0% | |
| ! | TTTTCTGCCTGAGCATTTTT+TGG | - | chr2_4:50606934-50606953 | None:intergenic | 35.0% |
| CAGAAAAATTGAATGGCTCT+TGG | + | chr2_4:50606947-50606966 | Msa0333070:three_prime_UTR | 35.0% | |
| ! | GGTTTCTTCATCTTCTTTTG+GGG | + | chr2_4:50606968-50606987 | Msa0333070:three_prime_UTR | 35.0% |
| AGATTCTCACAAGCCAAATA+TGG | - | chr2_4:50607002-50607021 | None:intergenic | 35.0% | |
| GCTTGTGAGAATCTATCATT+GGG | + | chr2_4:50607008-50607027 | Msa0333070:three_prime_UTR | 35.0% | |
| CTTTCGTTGAAACATGGTAA+TGG | + | chr2_4:50607098-50607117 | Msa0333070:three_prime_UTR | 35.0% | |
| TGGATAGTAATGGTAAGACG+TGG | - | chr2_4:50603412-50603431 | None:intergenic | 40.0% | |
| CAAGAGGCTTACAATTGTAG+AGG | - | chr2_4:50603446-50603465 | None:intergenic | 40.0% | |
| ! | TTGCATCCTTGTTTCAGTTC+AGG | + | chr2_4:50603496-50603515 | Msa0333070:five_prime_UTR | 40.0% |
| CCAATACCTGAACTGAAACA+AGG | - | chr2_4:50603505-50603524 | None:intergenic | 40.0% | |
| ! | CCTTGTTTCAGTTCAGGTAT+TGG | + | chr2_4:50603502-50603521 | Msa0333070:intron | 40.0% |
| ! | CTATTAGAAGGTGCACTTGA+TGG | + | chr2_4:50603834-50603853 | Msa0333070:exon | 40.0% |
| CAAGAATGGGTCCAAAGAAA+TGG | + | chr2_4:50604168-50604187 | Msa0333070:intron | 40.0% | |
| AGGACTGAAAAGAGAGAGAA+AGG | - | chr2_4:50604258-50604277 | None:intergenic | 40.0% | |
| TCTCTTAGCACTCTTTGAAC+AGG | + | chr2_4:50604719-50604738 | Msa0333070:intron | 40.0% | |
| AATCTACTGAACCCTCCAAT+GGG | + | chr2_4:50604745-50604764 | Msa0333070:CDS | 40.0% | |
| TTGATTCTTCATGAGGGCTA+TGG | - | chr2_4:50604773-50604792 | None:intergenic | 40.0% | |
| TCAAGTAACACTCCCAATGA+AGG | + | chr2_4:50604789-50604808 | Msa0333070:CDS | 40.0% | |
| TCCCAATGAAGGTTTGATGA+TGG | + | chr2_4:50604800-50604819 | Msa0333070:CDS | 40.0% | |
| CTCCATCATCAAACCTTCAT+TGG | - | chr2_4:50604805-50604824 | None:intergenic | 40.0% | |
| !! | ATGAAGGTTTGATGATGGAG+AGG | + | chr2_4:50604805-50604824 | Msa0333070:CDS | 40.0% |
| ! | TCATTGACTGCATGATTGCA+TGG | - | chr2_4:50605037-50605056 | None:intergenic | 40.0% |
| !! | ACAGCTCTCTGATTTTGGAA+GGG | + | chr2_4:50605747-50605766 | Msa0333070:intron | 40.0% |
| TTGGAAGGGGAATTAAGTCA+TGG | + | chr2_4:50605761-50605780 | Msa0333070:intron | 40.0% | |
| TGGAAGGGGAATTAAGTCAT+GGG | + | chr2_4:50605762-50605781 | Msa0333070:intron | 40.0% | |
| TTGCCTGCATACATAGGTAT+GGG | - | chr2_4:50606042-50606061 | None:intergenic | 40.0% | |
| TTCTTCTTGCCTGCATACAT+AGG | - | chr2_4:50606048-50606067 | None:intergenic | 40.0% | |
| TAACCATCACAGCCAGATTA+TGG | - | chr2_4:50606298-50606317 | None:intergenic | 40.0% | |
| ! | TTTTGTAAACGTATCCCAGG+TGG | + | chr2_4:50606371-50606390 | Msa0333070:intron | 40.0% |
| ! | ATGAGAGAAAGCATATGCCA+TGG | - | chr2_4:50606481-50606500 | None:intergenic | 40.0% |
| TCAAGGTAATATTGCAGTGG+AGG | + | chr2_4:50606563-50606582 | Msa0333070:intron | 40.0% | |
| !!! | CTGTAACCAGTATTTTGGTC+AGG | + | chr2_4:50606591-50606610 | Msa0333070:CDS | 40.0% |
| ATGAAGCCTGACCAAAATAC+TGG | - | chr2_4:50606600-50606619 | None:intergenic | 40.0% | |
| ! | ATAGCCTTGGTAAAGAAAGC+TGG | + | chr2_4:50606620-50606639 | Msa0333070:CDS | 40.0% |
| ! | TAGCCTTGGTAAAGAAAGCT+GGG | + | chr2_4:50606621-50606640 | Msa0333070:CDS | 40.0% |
| !! | GCCGTTGAGTTTCTTTGTTT+TGG | - | chr2_4:50606713-50606732 | None:intergenic | 40.0% |
| ACTAAAGCTGCCATGTCAAA+TGG | + | chr2_4:50606802-50606821 | Msa0333070:CDS | 40.0% | |
| CTAAAGCTGCCATGTCAAAT+GGG | + | chr2_4:50606803-50606822 | Msa0333070:CDS | 40.0% | |
| GCTCAGGCAGAAAAATTGAA+TGG | + | chr2_4:50606940-50606959 | Msa0333070:three_prime_UTR | 40.0% | |
| GGCTTGTGAGAATCTATCAT+TGG | + | chr2_4:50607007-50607026 | Msa0333070:three_prime_UTR | 40.0% | |
| !! | TGCTAGCTTTCGTTGAAACA+TGG | + | chr2_4:50607092-50607111 | Msa0333070:three_prime_UTR | 40.0% |
| ATCACTGCTCCTGAAATGAA+GGG | - | chr2_4:50607136-50607155 | None:intergenic | 40.0% | |
| AATCACTGCTCCTGAAATGA+AGG | - | chr2_4:50607137-50607156 | None:intergenic | 40.0% | |
| !! | GTTCAGGTATTGGAACTCCT+TGG | + | chr2_4:50603512-50603531 | Msa0333070:intron | 45.0% |
| CAATCTACTGAACCCTCCAA+TGG | + | chr2_4:50604744-50604763 | Msa0333070:CDS | 45.0% | |
| AATCATACGATCTGGACCGT+TGG | - | chr2_4:50605149-50605168 | None:intergenic | 45.0% | |
| CAGCCATGTCTATGATTGCA+AGG | - | chr2_4:50605347-50605366 | None:intergenic | 45.0% | |
| ! | CACAGCTCTCTGATTTTGGA+AGG | + | chr2_4:50605746-50605765 | Msa0333070:intron | 45.0% |
| !! | CAGCTCTCTGATTTTGGAAG+GGG | + | chr2_4:50605748-50605767 | Msa0333070:intron | 45.0% |
| TGCCTGCATACATAGGTATG+GGG | - | chr2_4:50606041-50606060 | None:intergenic | 45.0% | |
| CTTGCCTGCATACATAGGTA+TGG | - | chr2_4:50606043-50606062 | None:intergenic | 45.0% | |
| TGTTGTTCCTGTTTGGTCTC+TGG | - | chr2_4:50606128-50606147 | None:intergenic | 45.0% | |
| TGTGTATGATAACAGCAGCC+AGG | + | chr2_4:50606203-50606222 | Msa0333070:CDS | 45.0% | |
| GGCTAAGATTAATGAGCTCG+AGG | + | chr2_4:50606264-50606283 | Msa0333070:CDS | 45.0% | |
| GAGGTAGTGTTGCCATAATC+TGG | + | chr2_4:50606283-50606302 | Msa0333070:intron | 45.0% | |
| TTGCCATAATCTGGCTGTGA+TGG | + | chr2_4:50606292-50606311 | Msa0333070:intron | 45.0% | |
| TAAACGTATCCCAGGTGGAA+TGG | + | chr2_4:50606376-50606395 | Msa0333070:intron | 45.0% | |
| GGCATATGCTTTCTCTCATC+AGG | + | chr2_4:50606482-50606501 | Msa0333070:CDS | 45.0% | |
| AGCCTTGGTAAAGAAAGCTG+GGG | + | chr2_4:50606622-50606641 | Msa0333070:CDS | 45.0% | |
| AACCCCAGCTTTCTTTACCA+AGG | - | chr2_4:50606627-50606646 | None:intergenic | 45.0% | |
| TTGGTAAAGAAAGCTGGGGT+TGG | + | chr2_4:50606626-50606645 | Msa0333070:CDS | 45.0% | |
| ! | CTAATTTGGTCTTCTGCTGC+TGG | - | chr2_4:50606735-50606754 | None:intergenic | 45.0% |
| ! | GACATGGCAGCTTTAGTCAA+TGG | - | chr2_4:50606799-50606818 | None:intergenic | 45.0% |
| ACTCTCCTTCCCATTTGACA+TGG | - | chr2_4:50606815-50606834 | None:intergenic | 45.0% | |
| AGTCTCCTTCGCATTTGACA+CGG | - | chr2_4:50606878-50606897 | None:intergenic | 45.0% | |
| AATGCGAAGGAGACTGAGAA+AGG | + | chr2_4:50606883-50606902 | Msa0333070:CDS | 45.0% | |
| !!! | TTTAAAAGATTATAATATTT+TGG | + | chr2_4:50604462-50604481 | Msa0333070:intron | 5.0% |
| !!! | TTAAAAGATTATAATATTTT+GGG | + | chr2_4:50604463-50604482 | Msa0333070:intron | 5.0% |
| !! | TAATATACAAAAATAAAAAA+TGG | + | chr2_4:50605107-50605126 | Msa0333070:intron | 5.0% |
| ACACTGGATGTGCCAAAGCA+AGG | - | chr2_4:50604689-50604708 | None:intergenic | 50.0% | |
| ATGAGGGCTATGGTTCCCAT+TGG | - | chr2_4:50604763-50604782 | None:intergenic | 50.0% | |
| ! | CAGGCACAGCTCTCTGATTT+TGG | + | chr2_4:50605742-50605761 | Msa0333070:intron | 50.0% |
| GCCTGCATACATAGGTATGG+GGG | - | chr2_4:50606040-50606059 | None:intergenic | 50.0% | |
| !! | GTGCAGCGGTTCTGAAACAA+TGG | + | chr2_4:50606398-50606417 | Msa0333070:CDS | 50.0% |
| AATCAAACGAGAGCGAGCCA+TGG | + | chr2_4:50606461-50606480 | Msa0333070:CDS | 50.0% | |
| GGTCAGGCTTCATATAGCCT+TGG | + | chr2_4:50606607-50606626 | Msa0333070:CDS | 50.0% | |
| TTGGAGCTGGATGGAACGTT+GGG | + | chr2_4:50606645-50606664 | Msa0333070:CDS | 50.0% | |
| AGCTGCCATGTCAAATGGGA+AGG | + | chr2_4:50606807-50606826 | Msa0333070:CDS | 50.0% | |
| ! | GACACGGAAGCTTTAGCCAA+TGG | - | chr2_4:50606862-50606881 | None:intergenic | 50.0% |
| AGCTTCCGTGTCAAATGCGA+AGG | + | chr2_4:50606870-50606889 | Msa0333070:CDS | 50.0% | |
| AGGGCTGCCAAAAAATGCTC+AGG | + | chr2_4:50606924-50606943 | Msa0333070:exon | 50.0% | |
| GGGCTATGGTTCCCATTGGA+GGG | - | chr2_4:50604759-50604778 | None:intergenic | 55.0% | |
| AGGGCTATGGTTCCCATTGG+AGG | - | chr2_4:50604760-50604779 | None:intergenic | 55.0% | |
| TGGAGAGGACAGTTCCTTCC+AGG | + | chr2_4:50604820-50604839 | Msa0333070:CDS | 55.0% | |
| GCCCCCATACCTATGTATGC+AGG | + | chr2_4:50606036-50606055 | Msa0333070:intron | 55.0% | |
| CTGTTTGGTCTCTGGCCATG+TGG | - | chr2_4:50606120-50606139 | None:intergenic | 55.0% | |
| CACATGGCCAGAGACCAAAC+AGG | + | chr2_4:50606118-50606137 | Msa0333070:CDS | 55.0% | |
| AAGAAAGCTGGGGTTGGAGC+TGG | + | chr2_4:50606632-50606651 | Msa0333070:CDS | 55.0% | |
| GTTGGAGCTGGATGGAACGT+TGG | + | chr2_4:50606644-50606663 | Msa0333070:CDS | 55.0% | |
| CTTGAACCCGAACCTCCCAA+GGG | - | chr2_4:50606681-50606700 | None:intergenic | 55.0% | |
| ACTTGAACCCGAACCTCCCA+AGG | - | chr2_4:50606682-50606701 | None:intergenic | 55.0% | |
| TCCCAGGTGGAATGGTGCAG+CGG | + | chr2_4:50606384-50606403 | Msa0333070:intron | 60.0% | |
| ACCGCTGCACCATTCCACCT+GGG | - | chr2_4:50606388-50606407 | None:intergenic | 60.0% | |
| AACCGCTGCACCATTCCACC+TGG | - | chr2_4:50606389-50606408 | None:intergenic | 60.0% | |
| AAGCTGGGGTTGGAGCTGGA+TGG | + | chr2_4:50606636-50606655 | Msa0333070:CDS | 60.0% | |
| ! | TTGGGTTGCAGCGCGCCCTT+GGG | + | chr2_4:50606663-50606682 | Msa0333070:CDS | 65.0% |
| ! | GTTGGGTTGCAGCGCGCCCT+TGG | + | chr2_4:50606662-50606681 | Msa0333070:CDS | 70.0% |
| CAGCGCGCCCTTGGGAGGTT+CGG | + | chr2_4:50606671-50606690 | Msa0333070:CDS | 70.0% | |
| AGCGCGCCCTTGGGAGGTTC+GGG | + | chr2_4:50606672-50606691 | Msa0333070:CDS | 70.0% | |
| GGTTGCAGCGCGCCCTTGGG+AGG | + | chr2_4:50606666-50606685 | Msa0333070:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 50603353 | 50607204 | 50603353 | ID=Msa0333070;Name=Msa0333070 |
| chr2_4 | mRNA | 50603353 | 50607204 | 50603353 | ID=Msa0333070-mRNA-1;Parent=Msa0333070;Name=Msa0333070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=239|0.8|1|1|0.8|0.66|6|280|281 |
| chr2_4 | exon | 50603353 | 50603517 | 50603353 | ID=Msa0333070-mRNA-1:exon:15112;Parent=Msa0333070-mRNA-1 |
| chr2_4 | exon | 50603779 | 50603855 | 50603779 | ID=Msa0333070-mRNA-1:exon:15113;Parent=Msa0333070-mRNA-1 |
| chr2_4 | exon | 50604741 | 50604896 | 50604741 | ID=Msa0333070-mRNA-1:exon:15114;Parent=Msa0333070-mRNA-1 |
| chr2_4 | exon | 50606058 | 50606285 | 50606058 | ID=Msa0333070-mRNA-1:exon:15115;Parent=Msa0333070-mRNA-1 |
| chr2_4 | exon | 50606390 | 50606503 | 50606390 | ID=Msa0333070-mRNA-1:exon:15116;Parent=Msa0333070-mRNA-1 |
| chr2_4 | exon | 50606580 | 50607204 | 50606580 | ID=Msa0333070-mRNA-1:exon:15117;Parent=Msa0333070-mRNA-1 |
| chr2_4 | five_prime_UTR | 50603353 | 50603517 | 50603353 | ID=Msa0333070-mRNA-1:five_prime_utr;Parent=Msa0333070-mRNA-1 |
| chr2_4 | five_prime_UTR | 50603779 | 50603852 | 50603779 | ID=Msa0333070-mRNA-1:five_prime_utr;Parent=Msa0333070-mRNA-1 |
| chr2_4 | CDS | 50603853 | 50603855 | 50603853 | ID=Msa0333070-mRNA-1:cds;Parent=Msa0333070-mRNA-1 |
| chr2_4 | CDS | 50604741 | 50604896 | 50604741 | ID=Msa0333070-mRNA-1:cds;Parent=Msa0333070-mRNA-1 |
| chr2_4 | CDS | 50606058 | 50606285 | 50606058 | ID=Msa0333070-mRNA-1:cds;Parent=Msa0333070-mRNA-1 |
| chr2_4 | CDS | 50606390 | 50606503 | 50606390 | ID=Msa0333070-mRNA-1:cds;Parent=Msa0333070-mRNA-1 |
| chr2_4 | CDS | 50606580 | 50606924 | 50606580 | ID=Msa0333070-mRNA-1:cds;Parent=Msa0333070-mRNA-1 |
| chr2_4 | three_prime_UTR | 50606925 | 50607204 | 50606925 | ID=Msa0333070-mRNA-1:three_prime_utr;Parent=Msa0333070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
