Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186640 | XP_003589125.1 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186640 | sp|Q8L9J9|CAES_ARATH | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.81e-95 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186640 | G7I2A7 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072900 | Msa0186640 | 0.801402 | 9.159081e-49 | -8.615850e-47 |
| Msa0097090 | Msa0186640 | 0.990867 | 1.021808e-184 | -8.615850e-47 |
| Msa0186640 | Msa0187030 | 0.813134 | 2.985133e-51 | -8.615850e-47 |
| Msa0186640 | Msa0333070 | 0.806059 | 9.883822e-50 | -8.615850e-47 |
| Msa0186640 | Msa0389880 | 0.816599 | 5.090572e-52 | -8.615850e-47 |
| Msa0186640 | Msa0557460 | 0.812901 | 3.356852e-51 | -8.615850e-47 |
| Msa0186640 | Msa0626450 | 0.815853 | 7.473338e-52 | -8.615850e-47 |
| Msa0186640 | Msa0626490 | 0.815827 | 7.570945e-52 | -8.615850e-47 |
| Msa0186640 | Msa0648900 | 0.801808 | 7.561819e-49 | -8.615850e-47 |
| Msa0186640 | Msa0664600 | 0.820067 | 8.340750e-53 | -8.615850e-47 |
| Msa0186640 | Msa0795070 | 0.817662 | 2.935955e-52 | -8.615850e-47 |
| Msa0186640 | Msa0875290 | 0.803616 | 3.201908e-49 | -8.615850e-47 |
| Msa0186640 | Msa0974060 | 0.818107 | 2.329562e-52 | -8.615850e-47 |
| Msa0186640 | Msa1019000 | 0.812129 | 4.950757e-51 | -8.615850e-47 |
| Msa0186640 | Msa1024740 | 0.821675 | 3.558858e-53 | -8.615850e-47 |
| Msa0186640 | Msa1063500 | 0.803324 | 3.680761e-49 | -8.615850e-47 |
| Msa0186640 | Msa1108790 | 0.815491 | 8.994845e-52 | -8.615850e-47 |
| Msa0186640 | Msa1122520 | 0.800538 | 1.375132e-48 | -8.615850e-47 |
| Msa0186640 | Msa1147740 | 0.801535 | 8.602644e-49 | -8.615850e-47 |
| Msa0186640 | Msa1152510 | 0.802438 | 5.611326e-49 | -8.615850e-47 |
| Msa0186640 | Msa1269480 | 0.806536 | 7.841955e-50 | -8.615850e-47 |
| Msa0186640 | Msa1325060 | 0.826026 | 3.400764e-54 | -8.615850e-47 |
| Msa0186640 | Msa1341520 | 0.802668 | 5.030024e-49 | -8.615850e-47 |
| Msa0186640 | Msa1422420 | 0.801350 | 9.384765e-49 | -8.615850e-47 |
| Msa0186640 | Msa1440960 | 0.814108 | 1.822290e-51 | -8.615850e-47 |
| Msa0186640 | Msa1457510 | 0.986318 | 2.176754e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186640 | MtrunA17_Chr1g0152921 | 96.283 | 269 | 9 | 1 | 16 | 284 | 1 | 268 | 0.0 | 535 |
| Msa0186640 | MtrunA17_Chr3g0134281 | 53.480 | 273 | 114 | 4 | 24 | 284 | 3 | 274 | 1.06e-93 | 279 |
| Msa0186640 | MtrunA17_Chr1g0208131 | 57.851 | 242 | 91 | 4 | 39 | 272 | 9 | 247 | 1.28e-92 | 274 |
| Msa0186640 | MtrunA17_Chr4g0013791 | 49.746 | 197 | 91 | 2 | 24 | 212 | 3 | 199 | 6.00e-63 | 197 |
| Msa0186640 | MtrunA17_Chr0c04g0492041 | 56.707 | 164 | 62 | 3 | 24 | 179 | 3 | 165 | 9.25e-59 | 186 |
| Msa0186640 | MtrunA17_Chr4g0013781 | 58.333 | 60 | 25 | 0 | 212 | 271 | 2 | 61 | 2.41e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186640 | AT4G34215.2 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa0186640 | AT4G34215.1 | 62.025 | 237 | 81 | 4 | 44 | 273 | 24 | 258 | 1.84e-96 | 285 |
| Msa0186640 | AT3G53010.1 | 55.508 | 236 | 95 | 3 | 44 | 272 | 31 | 263 | 2.24e-86 | 260 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTCTTCTTGTTATTC+AGG | 0.191069 | 2_1:-1391630 | Msa0186640:intron |
| GATGGGCTTGGTTTGCATTC+TGG | 0.239456 | 2_1:+1392034 | None:intergenic |
| AGAATTTAATTGAGAATCTT+AGG | 0.247407 | 2_1:-1391667 | Msa0186640:CDS |
| CTTAGCTCCAACATTAATAA+TGG | 0.266896 | 2_1:-1392215 | Msa0186640:CDS |
| ATGGCTGTTGGAAGCGAAAT+AGG | 0.302064 | 2_1:+1389204 | None:intergenic |
| TTTAGTTGCTTTGCCACAAT+GGG | 0.336824 | 2_1:+1392138 | None:intergenic |
| GTATTTAGCTTTAAAATTGA+TGG | 0.341457 | 2_1:+1392016 | None:intergenic |
| GCATCAACACATTTGACATT+AGG | 0.366408 | 2_1:+1389307 | None:intergenic |
| CTTGTGTATAATTAAATTGA+TGG | 0.369566 | 2_1:+1389185 | None:intergenic |
| GAAGGTGAGACATGCTCAAT+TGG | 0.371845 | 2_1:-1389341 | Msa0186640:CDS |
| ATGCAGGTAGCACTTGCATC+AGG | 0.373953 | 2_1:-1389382 | Msa0186640:intron |
| AGCTAAATACAAAACTCAAA+TGG | 0.377066 | 2_1:-1392003 | Msa0186640:CDS |
| AGCTTTAAAATTGATGGGCT+TGG | 0.384064 | 2_1:+1392022 | None:intergenic |
| ACAATGTCTGAGGTTCATTT+AGG | 0.388776 | 2_1:-1389244 | Msa0186640:CDS |
| ATCACATTTGTATAATGAAT+TGG | 0.419666 | 2_1:-1391810 | Msa0186640:CDS |
| ATTAGCTCCATTATTAATGT+TGG | 0.429292 | 2_1:+1392208 | None:intergenic |
| CATTTGTCAGTCGCACAATT+CGG | 0.430045 | 2_1:-1389105 | Msa0186640:three_prime_UTR |
| AAGATCTATTGAATCGGTTA+AGG | 0.437967 | 2_1:-1391783 | Msa0186640:CDS |
| AGAATTGAAGAGTGGAGAAA+TGG | 0.441126 | 2_1:-1391833 | Msa0186640:CDS |
| AGTGGTGGTGAATGTGTTAT+AGG | 0.445867 | 2_1:-1391884 | Msa0186640:CDS |
| GGCTTGGTTTGCATTCTGGT+GGG | 0.447461 | 2_1:+1392038 | None:intergenic |
| GCTAAATACAAAACTCAAAT+GGG | 0.451447 | 2_1:-1392002 | Msa0186640:CDS |
| TTCATTTGCAAAAGCAAACC+CGG | 0.451898 | 2_1:+1391919 | None:intergenic |
| CTTTAGTTGCTTTGCCACAA+TGG | 0.457722 | 2_1:+1392137 | None:intergenic |
| TATTTAGCTTTAAAATTGAT+GGG | 0.464281 | 2_1:+1392017 | None:intergenic |
| AAAACTTGTGGTGTTGGACC+CGG | 0.468881 | 2_1:-1391938 | Msa0186640:CDS |
| GGGCTTGGTTTGCATTCTGG+TGG | 0.470102 | 2_1:+1392037 | None:intergenic |
| CTTGTTCCTTGTGCAGTTGG+TGG | 0.473553 | 2_1:-1391860 | Msa0186640:CDS |
| GGTCTTGTTCCTTGTGCAGT+TGG | 0.481808 | 2_1:-1391863 | Msa0186640:CDS |
| CATTATTAATGTTGGAGCTA+AGG | 0.491403 | 2_1:+1392216 | None:intergenic |
| ATAATTAAATTGATGGCTGT+TGG | 0.497977 | 2_1:+1389192 | None:intergenic |
| AAACTTGTGGTGTTGGACCC+GGG | 0.509374 | 2_1:-1391937 | Msa0186640:CDS |
| CTTCATGCAGATATAGATGT+AGG | 0.517583 | 2_1:-1391962 | Msa0186640:CDS |
| TTGTTCCTTGTGCAGTTGGT+GGG | 0.521171 | 2_1:-1391859 | Msa0186640:CDS |
| AAGGTGAGACATGCTCAATT+GGG | 0.524583 | 2_1:-1389340 | Msa0186640:CDS |
| GGTGAGAAGATCTATTGAAT+CGG | 0.527189 | 2_1:-1391789 | Msa0186640:CDS |
| TGTCAAATGTGTTGATGCTA+AGG | 0.537974 | 2_1:-1389302 | Msa0186640:CDS |
| ATTTACATGACAAGCTAAGT+AGG | 0.545635 | 2_1:-1389144 | Msa0186640:three_prime_UTR |
| GAGCTAAGGAAAATGTGTGT+TGG | 0.549437 | 2_1:+1392230 | None:intergenic |
| CAAAGCAACATGGCTGGTCG+AGG | 0.552658 | 2_1:-1392094 | Msa0186640:CDS |
| ACCTGAATAACAAGAAGAGA+TGG | 0.554613 | 2_1:+1391629 | None:intergenic |
| GCAGGACAAAGCAACATGGC+TGG | 0.563412 | 2_1:-1392100 | Msa0186640:CDS |
| CTCGTCCCACCAACTGCACA+AGG | 0.564466 | 2_1:+1391854 | None:intergenic |
| TGAAGGGTATAAATATAGAA+TGG | 0.568134 | 2_1:-1391690 | Msa0186640:CDS |
| TGCAGGTAGCACTTGCATCA+GGG | 0.569182 | 2_1:-1389381 | Msa0186640:intron |
| AATGAAATTGTTAGAATGAG+TGG | 0.572648 | 2_1:-1391902 | Msa0186640:CDS |
| GGAAGGCAAGTTTATAGAGA+AGG | 0.575658 | 2_1:-1389359 | Msa0186640:CDS |
| GCAGGTAGCACTTGCATCAG+GGG | 0.585921 | 2_1:-1389380 | Msa0186640:intron |
| ACATCTATATCTGCATGAAG+AGG | 0.586139 | 2_1:+1391965 | None:intergenic |
| GTGGGACGAGAATTGAAGAG+TGG | 0.589128 | 2_1:-1391841 | Msa0186640:CDS |
| GAACCTCAGACATTGTGGTA+AGG | 0.594017 | 2_1:+1389251 | None:intergenic |
| TAAATGAACCTCAGACATTG+TGG | 0.604324 | 2_1:+1389246 | None:intergenic |
| GTAAGAGAAGAAGATGCTGA+AGG | 0.605787 | 2_1:-1391707 | Msa0186640:CDS |
| GTCAAATGTGTTGATGCTAA+GGG | 0.607569 | 2_1:-1389301 | Msa0186640:CDS |
| TCTATTGAATCGGTTAAGGA+TGG | 0.608408 | 2_1:-1391779 | Msa0186640:CDS |
| TCACCTTACCACAATGTCTG+AGG | 0.609569 | 2_1:-1389254 | Msa0186640:CDS |
| GTAGCACTTGCATCAGGGGA+AGG | 0.611333 | 2_1:-1389376 | Msa0186640:CDS |
| TAAGAGAAGAAGATGCTGAA+GGG | 0.611896 | 2_1:-1391706 | Msa0186640:CDS |
| AGCAACATGGCTGGTCGAGG+AGG | 0.627227 | 2_1:-1392091 | Msa0186640:CDS |
| TCATTTGCAAAAGCAAACCC+GGG | 0.638917 | 2_1:+1391920 | None:intergenic |
| GAATCGGTTAAGGATGGTGA+TGG | 0.647703 | 2_1:-1391773 | Msa0186640:CDS |
| GTTGTAACATTACCCCATTG+TGG | 0.661318 | 2_1:-1392151 | Msa0186640:CDS |
| ATTAGCAGGACAAAGCAACA+TGG | 0.671081 | 2_1:-1392104 | Msa0186640:CDS |
| TTAGTTGCTTTGCCACAATG+GGG | 0.682804 | 2_1:+1392139 | None:intergenic |
| GAAATTGTTAGAATGAGTGG+TGG | 0.705762 | 2_1:-1391899 | Msa0186640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTTTTTTAATTTAAAATTT+TGG | - | chr2_1:1390013-1390032 | Msa0186640:intron | 10.0% |
| !! | GTTAAAAAACAAAAAATTAT+AGG | - | chr2_1:1390589-1390608 | Msa0186640:intron | 10.0% |
| !! | AATTCTCTTATAAAAAATAA+TGG | + | chr2_1:1390963-1390982 | None:intergenic | 10.0% |
| !! | AATACAAAATTTATAACTAA+TGG | - | chr2_1:1391105-1391124 | Msa0186640:intron | 10.0% |
| !!! | TTTTAAATTTATGCATTTTA+CGG | + | chr2_1:1391760-1391779 | None:intergenic | 10.0% |
| !!! | TATTTAGCTTTAAAATTGAT+GGG | + | chr2_1:1389259-1389278 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCATTTTTTTGT+TGG | - | chr2_1:1389699-1389718 | Msa0186640:intron | 15.0% |
| !! | GGAAAAAAAGTAATTAATAT+TGG | + | chr2_1:1390187-1390206 | None:intergenic | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | chr2_1:1390208-1390227 | None:intergenic | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | chr2_1:1390209-1390228 | None:intergenic | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | chr2_1:1390333-1390352 | None:intergenic | 15.0% |
| !!! | TAAATTTTGAATCATTAACA+AGG | - | chr2_1:1390455-1390474 | Msa0186640:intron | 15.0% |
| !! | TATTATTAAACAGATTAGAA+CGG | + | chr2_1:1390734-1390753 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAGTTTTTTAAC+AGG | + | chr2_1:1390901-1390920 | None:intergenic | 15.0% |
| !! | AAAATGAAATAGTACTTATA+CGG | - | chr2_1:1391156-1391175 | Msa0186640:intron | 15.0% |
| !! | TTGACTAATAAGAAAATTTA+AGG | - | chr2_1:1391272-1391291 | Msa0186640:intron | 15.0% |
| !! | AACAATGTATAATATATGTA+AGG | - | chr2_1:1391495-1391514 | Msa0186640:intron | 15.0% |
| !!! | TTTAAAATGATAAAGTTAAG+AGG | - | chr2_1:1391630-1391649 | Msa0186640:intron | 15.0% |
| !!! | GTATTTAGCTTTAAAATTGA+TGG | + | chr2_1:1389260-1389279 | None:intergenic | 20.0% |
| !! | ATCACATTTGTATAATGAAT+TGG | - | chr2_1:1389463-1389482 | Msa0186640:intron | 20.0% |
| !! | AGAATTTAATTGAGAATCTT+AGG | - | chr2_1:1389606-1389625 | Msa0186640:intron | 20.0% |
| !! | TTATATTTGATATTCCAGAT+GGG | + | chr2_1:1389758-1389777 | None:intergenic | 20.0% |
| !!! | GAAATTTGAAATTCGAATAT+AGG | + | chr2_1:1389956-1389975 | None:intergenic | 20.0% |
| !!! | CTTTTTTGATGGATAATTAT+GGG | + | chr2_1:1390046-1390065 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGATGGATAATTA+TGG | + | chr2_1:1390047-1390066 | None:intergenic | 20.0% |
| !! | AATTATCCATCAAAAAAGTT+TGG | - | chr2_1:1390048-1390067 | Msa0186640:intron | 20.0% |
| !! | ATTATCCATCAAAAAAGTTT+GGG | - | chr2_1:1390049-1390068 | Msa0186640:intron | 20.0% |
| !! | ATTATTAAACAGATTAGAAC+GGG | + | chr2_1:1390733-1390752 | None:intergenic | 20.0% |
| !!! | GATTTTTCAATAATGAAATG+AGG | - | chr2_1:1390771-1390790 | Msa0186640:intron | 20.0% |
| !!! | GTTCTGTTTTCAATAATAAA+GGG | + | chr2_1:1390819-1390838 | None:intergenic | 20.0% |
| !!! | AGTTCTGTTTTCAATAATAA+AGG | + | chr2_1:1390820-1390839 | None:intergenic | 20.0% |
| !!! | AACTTTTTCTTTTTGTACAT+TGG | - | chr2_1:1390868-1390887 | Msa0186640:intron | 20.0% |
| !! | ATTGATGAAGAAAAAAACAT+AGG | + | chr2_1:1391413-1391432 | None:intergenic | 20.0% |
| !!! | ATATATGCCTTTGTATTTTT+TGG | + | chr2_1:1391546-1391565 | None:intergenic | 20.0% |
| !! | AATAAAGCAACAAATAATCA+CGG | - | chr2_1:1391654-1391673 | Msa0186640:CDS | 20.0% |
| !! | CATAAAAATAATTTAAGTGG+TGG | + | chr2_1:1391874-1391893 | None:intergenic | 20.0% |
| !! | CTGCATAAAAATAATTTAAG+TGG | + | chr2_1:1391877-1391896 | None:intergenic | 20.0% |
| !!! | CACTTAAATTATTTTTATGC+AGG | - | chr2_1:1391875-1391894 | Msa0186640:CDS | 20.0% |
| !! | CTTGTGTATAATTAAATTGA+TGG | + | chr2_1:1392091-1392110 | None:intergenic | 20.0% |
| ! | ATTAGCTCCATTATTAATGT+TGG | + | chr2_1:1389068-1389087 | None:intergenic | 25.0% |
| !! | AAAGACATTTTCATATTAGC+AGG | - | chr2_1:1389155-1389174 | Msa0186640:three_prime_UTR | 25.0% |
| !!! | AGGTGTTTTAAATGGAAAAT+GGG | - | chr2_1:1389202-1389221 | Msa0186640:CDS | 25.0% |
| ! | AGCTAAATACAAAACTCAAA+TGG | - | chr2_1:1389270-1389289 | Msa0186640:CDS | 25.0% |
| ! | GCTAAATACAAAACTCAAAT+GGG | - | chr2_1:1389271-1389290 | Msa0186640:CDS | 25.0% |
| ! | AATGAAATTGTTAGAATGAG+TGG | - | chr2_1:1389371-1389390 | Msa0186640:CDS | 25.0% |
| !! | TGAAGGGTATAAATATAGAA+TGG | - | chr2_1:1389583-1389602 | Msa0186640:intron | 25.0% |
| ! | CTTATATTTGATATTCCAGA+TGG | + | chr2_1:1389759-1389778 | None:intergenic | 25.0% |
| !! | TTCAACTTTTCTATGTAGAT+TGG | + | chr2_1:1389903-1389922 | None:intergenic | 25.0% |
| ! | TGAAAATCTTAAAAGAAGAC+AGG | - | chr2_1:1389919-1389938 | Msa0186640:intron | 25.0% |
| ! | GTAAATGACTCAGTTATTAT+GGG | + | chr2_1:1390118-1390137 | None:intergenic | 25.0% |
| ! | TGTAAATGACTCAGTTATTA+TGG | + | chr2_1:1390119-1390138 | None:intergenic | 25.0% |
| ! | AGTGGAATATGTATTGAATT+GGG | + | chr2_1:1390244-1390263 | None:intergenic | 25.0% |
| ! | AAGTGGAATATGTATTGAAT+TGG | + | chr2_1:1390245-1390264 | None:intergenic | 25.0% |
| !! | TAAGTGCTTTTGTTAAGTAT+TGG | + | chr2_1:1390293-1390312 | None:intergenic | 25.0% |
| ! | AGCATGATTCGAAAAATTTA+TGG | - | chr2_1:1390500-1390519 | Msa0186640:intron | 25.0% |
| ! | ATGATTCGAAAAATTTATGG+AGG | - | chr2_1:1390503-1390522 | Msa0186640:intron | 25.0% |
| ! | AGTAGTTTAACAAATTGACA+AGG | - | chr2_1:1390533-1390552 | Msa0186640:intron | 25.0% |
| ! | GTAGTTTAACAAATTGACAA+GGG | - | chr2_1:1390534-1390553 | Msa0186640:intron | 25.0% |
| ! | TTCTCTTAATCAATGTCTTA+AGG | - | chr2_1:1390645-1390664 | Msa0186640:intron | 25.0% |
| ! | TCTCTTAATCAATGTCTTAA+GGG | - | chr2_1:1390646-1390665 | Msa0186640:intron | 25.0% |
| ! | GAAAAAGTAGATTGAGATAA+TGG | + | chr2_1:1390938-1390957 | None:intergenic | 25.0% |
| !!! | GTCAAATAGTTGTTGTTTTT+TGG | + | chr2_1:1391073-1391092 | None:intergenic | 25.0% |
| ! | ACTTATACGGTATAAATATG+TGG | - | chr2_1:1391169-1391188 | Msa0186640:intron | 25.0% |
| !!! | AATTCTCGCTTTTACTTAAT+TGG | + | chr2_1:1391361-1391380 | None:intergenic | 25.0% |
| ! | TGTATAATATATGTAAGGTC+TGG | - | chr2_1:1391500-1391519 | Msa0186640:intron | 25.0% |
| ! | CATATATATCCTAACTAAGT+TGG | - | chr2_1:1391559-1391578 | Msa0186640:intron | 25.0% |
| ! | ATTCTTGCTAATTGGATTAT+TGG | + | chr2_1:1391587-1391606 | None:intergenic | 25.0% |
| !! | ATAATTAAATTGATGGCTGT+TGG | + | chr2_1:1392084-1392103 | None:intergenic | 25.0% |
| !!! | GAAAATGTGTGTTGGTTTTT+AGG | + | chr2_1:1389038-1389057 | None:intergenic | 30.0% |
| CATTATTAATGTTGGAGCTA+AGG | + | chr2_1:1389060-1389079 | None:intergenic | 30.0% | |
| CTTAGCTCCAACATTAATAA+TGG | - | chr2_1:1389058-1389077 | Msa0186640:three_prime_UTR | 30.0% | |
| !! | GTCAATGTTTTTGTGTGTTT+TGG | - | chr2_1:1389100-1389119 | Msa0186640:three_prime_UTR | 30.0% |
| !! | GAGGTGTTTTAAATGGAAAA+TGG | - | chr2_1:1389201-1389220 | Msa0186640:CDS | 30.0% |
| !! | GTTTTAAATGGAAAATGGGA+TGG | - | chr2_1:1389206-1389225 | Msa0186640:CDS | 30.0% |
| ATAGATGTAGGAAAAACTTG+TGG | - | chr2_1:1389323-1389342 | Msa0186640:CDS | 30.0% | |
| AAGATCTATTGAATCGGTTA+AGG | - | chr2_1:1389490-1389509 | Msa0186640:intron | 30.0% | |
| ! | GTGTAATTAGAGCAGTTTTA+TGG | - | chr2_1:1389522-1389541 | Msa0186640:intron | 30.0% |
| !!! | GTTTGCGTTTTTTAGTGTAT+TGG | - | chr2_1:1389865-1389884 | Msa0186640:intron | 30.0% |
| AATCTTAAAAGAAGACAGGA+AGG | - | chr2_1:1389923-1389942 | Msa0186640:intron | 30.0% | |
| ATCTTAAAAGAAGACAGGAA+GGG | - | chr2_1:1389924-1389943 | Msa0186640:intron | 30.0% | |
| CCACTATCATAAATACAAAG+TGG | + | chr2_1:1390262-1390281 | None:intergenic | 30.0% | |
| CCACTTTGTATTTATGATAG+TGG | - | chr2_1:1390259-1390278 | Msa0186640:intron | 30.0% | |
| AAATGAAGGAGAGAGAAAAA+TGG | + | chr2_1:1390319-1390338 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAACAAGTGCTCTT+AGG | + | chr2_1:1390579-1390598 | None:intergenic | 30.0% |
| ! | ATGTTATCTTGACAACCTTT+TGG | + | chr2_1:1391205-1391224 | None:intergenic | 30.0% |
| !!! | TATGCCTTTGTATTTTTTGG+TGG | + | chr2_1:1391543-1391562 | None:intergenic | 30.0% |
| TTATTGGTACCAACTTAGTT+AGG | + | chr2_1:1391571-1391590 | None:intergenic | 30.0% | |
| TGCTTTCAATTCTTGCTAAT+TGG | + | chr2_1:1391595-1391614 | None:intergenic | 30.0% | |
| CCATCTTCATATCAATCAAA+GGG | + | chr2_1:1391699-1391718 | None:intergenic | 30.0% | |
| CCTTTGATTGATATGAAGAT+GGG | - | chr2_1:1391697-1391716 | Msa0186640:CDS | 30.0% | |
| ! | TTTTACGGTATGCAATCAAT+TGG | + | chr2_1:1391745-1391764 | None:intergenic | 30.0% |
| ATTTACATGACAAGCTAAGT+AGG | - | chr2_1:1392129-1392148 | Msa0186640:CDS | 30.0% | |
| !!! | CACATTTTGACTTGGTAAAT+TGG | - | chr2_1:1392216-1392235 | Msa0186640:CDS | 30.0% |
| !! | GTTTTTAGGCATATGGAAGA+GGG | + | chr2_1:1389024-1389043 | None:intergenic | 35.0% |
| !!! | TGTGTTGGTTTTTAGGCATA+TGG | + | chr2_1:1389031-1389050 | None:intergenic | 35.0% |
| ! | TTTAGTTGCTTTGCCACAAT+GGG | + | chr2_1:1389138-1389157 | None:intergenic | 35.0% |
| !! | AGCTTTAAAATTGATGGGCT+TGG | + | chr2_1:1389254-1389273 | None:intergenic | 35.0% |
| ACATCTATATCTGCATGAAG+AGG | + | chr2_1:1389311-1389330 | None:intergenic | 35.0% | |
| CTTCATGCAGATATAGATGT+AGG | - | chr2_1:1389311-1389330 | Msa0186640:CDS | 35.0% | |
| TTCATTTGCAAAAGCAAACC+CGG | + | chr2_1:1389357-1389376 | None:intergenic | 35.0% | |
| GAAATTGTTAGAATGAGTGG+TGG | - | chr2_1:1389374-1389393 | Msa0186640:CDS | 35.0% | |
| AGAATTGAAGAGTGGAGAAA+TGG | - | chr2_1:1389440-1389459 | Msa0186640:intron | 35.0% | |
| GGTGAGAAGATCTATTGAAT+CGG | - | chr2_1:1389484-1389503 | Msa0186640:intron | 35.0% | |
| TCTATTGAATCGGTTAAGGA+TGG | - | chr2_1:1389494-1389513 | Msa0186640:intron | 35.0% | |
| !! | AGAGCAGTTTTATGGTATCA+AGG | - | chr2_1:1389530-1389549 | Msa0186640:intron | 35.0% |
| TAAGAGAAGAAGATGCTGAA+GGG | - | chr2_1:1389567-1389586 | Msa0186640:intron | 35.0% | |
| !! | TCCATCTCTTCTTGTTATTC+AGG | - | chr2_1:1389643-1389662 | Msa0186640:intron | 35.0% |
| ACCTGAATAACAAGAAGAGA+TGG | + | chr2_1:1389647-1389666 | None:intergenic | 35.0% | |
| GCGTGATGAATGTAAATGAT+AGG | - | chr2_1:1389982-1390001 | Msa0186640:intron | 35.0% | |
| !!! | CGTTTCCCAAACTTTTTTGA+TGG | + | chr2_1:1390057-1390076 | None:intergenic | 35.0% |
| ATGACTCAGTTATTATGGGA+CGG | + | chr2_1:1390114-1390133 | None:intergenic | 35.0% | |
| !!! | GTGCTTTTGTTAAGTATTGG+TGG | + | chr2_1:1390290-1390309 | None:intergenic | 35.0% |
| ATATGTGTGAAATGAGCTAG+CGG | - | chr2_1:1390353-1390372 | Msa0186640:intron | 35.0% | |
| TAATCAATGTCTTAAGGGCA+CGG | - | chr2_1:1390651-1390670 | Msa0186640:intron | 35.0% | |
| ACGGTATAAATATGTGGTGT+TGG | - | chr2_1:1391175-1391194 | Msa0186640:intron | 35.0% | |
| !!! | TTGTATTTTTTGGTGGTGTC+TGG | + | chr2_1:1391536-1391555 | None:intergenic | 35.0% |
| GACACCACCAAAAAATACAA+AGG | - | chr2_1:1391536-1391555 | Msa0186640:intron | 35.0% | |
| CCCTTTGATTGATATGAAGA+TGG | - | chr2_1:1391696-1391715 | Msa0186640:CDS | 35.0% | |
| CCCATCTTCATATCAATCAA+AGG | + | chr2_1:1391700-1391719 | None:intergenic | 35.0% | |
| GCATCAACACATTTGACATT+AGG | + | chr2_1:1391969-1391988 | None:intergenic | 35.0% | |
| ! | TGTCAAATGTGTTGATGCTA+AGG | - | chr2_1:1391971-1391990 | Msa0186640:CDS | 35.0% |
| ! | GTCAAATGTGTTGATGCTAA+GGG | - | chr2_1:1391972-1391991 | Msa0186640:CDS | 35.0% |
| TAAATGAACCTCAGACATTG+TGG | + | chr2_1:1392030-1392049 | None:intergenic | 35.0% | |
| ! | ACAATGTCTGAGGTTCATTT+AGG | - | chr2_1:1392029-1392048 | Msa0186640:CDS | 35.0% |
| !!! | GAACAACTCACATTTTGACT+TGG | - | chr2_1:1392208-1392227 | Msa0186640:CDS | 35.0% |
| !! | GGTTTTTAGGCATATGGAAG+AGG | + | chr2_1:1389025-1389044 | None:intergenic | 40.0% |
| GAGCTAAGGAAAATGTGTGT+TGG | + | chr2_1:1389046-1389065 | None:intergenic | 40.0% | |
| GTTGTAACATTACCCCATTG+TGG | - | chr2_1:1389122-1389141 | Msa0186640:three_prime_UTR | 40.0% | |
| ! | TTAGTTGCTTTGCCACAATG+GGG | + | chr2_1:1389137-1389156 | None:intergenic | 40.0% |
| ! | CTTTAGTTGCTTTGCCACAA+TGG | + | chr2_1:1389139-1389158 | None:intergenic | 40.0% |
| ATTAGCAGGACAAAGCAACA+TGG | - | chr2_1:1389169-1389188 | Msa0186640:exon | 40.0% | |
| GTAGGAAAAACTTGTGGTGT+TGG | - | chr2_1:1389329-1389348 | Msa0186640:CDS | 40.0% | |
| TCATTTGCAAAAGCAAACCC+GGG | + | chr2_1:1389356-1389375 | None:intergenic | 40.0% | |
| ! | AGTGGTGGTGAATGTGTTAT+AGG | - | chr2_1:1389389-1389408 | Msa0186640:intron | 40.0% |
| GTAAGAGAAGAAGATGCTGA+AGG | - | chr2_1:1389566-1389585 | Msa0186640:intron | 40.0% | |
| TCTTGATACATTCACCCATC+TGG | - | chr2_1:1389741-1389760 | Msa0186640:intron | 40.0% | |
| AGCTAGCGGCTCAATTAATT+CGG | - | chr2_1:1390367-1390386 | Msa0186640:intron | 40.0% | |
| CAAGTTGTCACGTTTGTCAA+TGG | + | chr2_1:1390689-1390708 | None:intergenic | 40.0% | |
| TGTGCAAGTTGTGATAGACA+CGG | - | chr2_1:1391433-1391452 | Msa0186640:intron | 40.0% | |
| CAAATAATCACGGTGCAACA+TGG | - | chr2_1:1391664-1391683 | Msa0186640:CDS | 40.0% | |
| GGAAGGCAAGTTTATAGAGA+AGG | - | chr2_1:1391914-1391933 | Msa0186640:CDS | 40.0% | |
| AAGGTGAGACATGCTCAATT+GGG | - | chr2_1:1391933-1391952 | Msa0186640:CDS | 40.0% | |
| CATTTGTCAGTCGCACAATT+CGG | - | chr2_1:1392168-1392187 | Msa0186640:CDS | 40.0% | |
| !!! | GGTCGAGGAGGTGTTTTAAA+TGG | - | chr2_1:1389194-1389213 | Msa0186640:CDS | 45.0% |
| ! | AAAACTTGTGGTGTTGGACC+CGG | - | chr2_1:1389335-1389354 | Msa0186640:CDS | 45.0% |
| TTGTTCCTTGTGCAGTTGGT+GGG | - | chr2_1:1389414-1389433 | Msa0186640:intron | 45.0% | |
| GAATCGGTTAAGGATGGTGA+TGG | - | chr2_1:1389500-1389519 | Msa0186640:intron | 45.0% | |
| CTCAGTTATTATGGGACGGA+GGG | + | chr2_1:1390110-1390129 | None:intergenic | 45.0% | |
| ACTCAGTTATTATGGGACGG+AGG | + | chr2_1:1390111-1390130 | None:intergenic | 45.0% | |
| GCGGCTCAATTAATTCGGAA+CGG | - | chr2_1:1390372-1390391 | Msa0186640:intron | 45.0% | |
| CGGCTCAATTAATTCGGAAC+GGG | - | chr2_1:1390373-1390392 | Msa0186640:intron | 45.0% | |
| ! | TGTGGTGTTGGACAACCAAA+AGG | - | chr2_1:1391187-1391206 | Msa0186640:intron | 45.0% |
| GTGCAAGTTGTGATAGACAC+GGG | - | chr2_1:1391434-1391453 | Msa0186640:intron | 45.0% | |
| GAAGGTGAGACATGCTCAAT+TGG | - | chr2_1:1391932-1391951 | Msa0186640:CDS | 45.0% | |
| TCACCTTACCACAATGTCTG+AGG | - | chr2_1:1392019-1392038 | Msa0186640:CDS | 45.0% | |
| GAACCTCAGACATTGTGGTA+AGG | + | chr2_1:1392025-1392044 | None:intergenic | 45.0% | |
| ATGGCTGTTGGAAGCGAAAT+AGG | + | chr2_1:1392072-1392091 | None:intergenic | 45.0% | |
| !!! | TAAATTTTGTATTTTTATAT+TGG | + | chr2_1:1391098-1391117 | None:intergenic | 5.0% |
| !! | GGCTTGGTTTGCATTCTGGT+GGG | + | chr2_1:1389238-1389257 | None:intergenic | 50.0% |
| !! | GATGGGCTTGGTTTGCATTC+TGG | + | chr2_1:1389242-1389261 | None:intergenic | 50.0% |
| ! | AAACTTGTGGTGTTGGACCC+GGG | - | chr2_1:1389336-1389355 | Msa0186640:CDS | 50.0% |
| !! | GGTCTTGTTCCTTGTGCAGT+TGG | - | chr2_1:1389410-1389429 | Msa0186640:intron | 50.0% |
| CTTGTTCCTTGTGCAGTTGG+TGG | - | chr2_1:1389413-1389432 | Msa0186640:intron | 50.0% | |
| GTGGGACGAGAATTGAAGAG+TGG | - | chr2_1:1389432-1389451 | Msa0186640:intron | 50.0% | |
| ATGCAGGTAGCACTTGCATC+AGG | - | chr2_1:1391891-1391910 | Msa0186640:CDS | 50.0% | |
| TGCAGGTAGCACTTGCATCA+GGG | - | chr2_1:1391892-1391911 | Msa0186640:CDS | 50.0% | |
| GCAGGACAAAGCAACATGGC+TGG | - | chr2_1:1389173-1389192 | Msa0186640:exon | 55.0% | |
| ! | CAAAGCAACATGGCTGGTCG+AGG | - | chr2_1:1389179-1389198 | Msa0186640:CDS | 55.0% |
| !! | GGGCTTGGTTTGCATTCTGG+TGG | + | chr2_1:1389239-1389258 | None:intergenic | 55.0% |
| CCAACTGAGCTGAGCTCGTA+GGG | + | chr2_1:1391471-1391490 | None:intergenic | 55.0% | |
| ACCAACTGAGCTGAGCTCGT+AGG | + | chr2_1:1391472-1391491 | None:intergenic | 55.0% | |
| CACGGTGCAACATGGAGTCA+TGG | - | chr2_1:1391672-1391691 | Msa0186640:CDS | 55.0% | |
| GCAGGTAGCACTTGCATCAG+GGG | - | chr2_1:1391893-1391912 | Msa0186640:CDS | 55.0% | |
| GTAGCACTTGCATCAGGGGA+AGG | - | chr2_1:1391897-1391916 | Msa0186640:CDS | 55.0% | |
| ! | AGCAACATGGCTGGTCGAGG+AGG | - | chr2_1:1389182-1389201 | Msa0186640:CDS | 60.0% |
| CTCGTCCCACCAACTGCACA+AGG | + | chr2_1:1389422-1389441 | None:intergenic | 60.0% | |
| CCCTACGAGCTCAGCTCAGT+TGG | - | chr2_1:1391468-1391487 | Msa0186640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 1389011 | 1392284 | 1389011 | ID=Msa0186640;Name=Msa0186640 |
| chr2_1 | mRNA | 1389011 | 1392284 | 1389011 | ID=Msa0186640-mRNA-1;Parent=Msa0186640;Name=Msa0186640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=21|1|1|1|1|1|2|166|284 |
| chr2_1 | exon | 1389011 | 1389398 | 1389011 | ID=Msa0186640-mRNA-1:exon:591;Parent=Msa0186640-mRNA-1 |
| chr2_1 | exon | 1391631 | 1392284 | 1391631 | ID=Msa0186640-mRNA-1:exon:590;Parent=Msa0186640-mRNA-1 |
| chr2_1 | five_prime_UTR | 1392264 | 1392284 | 1392264 | ID=Msa0186640-mRNA-1:five_prime_utr;Parent=Msa0186640-mRNA-1 |
| chr2_1 | CDS | 1391631 | 1392263 | 1391631 | ID=Msa0186640-mRNA-1:cds;Parent=Msa0186640-mRNA-1 |
| chr2_1 | CDS | 1389177 | 1389398 | 1389177 | ID=Msa0186640-mRNA-1:cds;Parent=Msa0186640-mRNA-1 |
| chr2_1 | three_prime_UTR | 1389011 | 1389176 | 1389011 | ID=Msa0186640-mRNA-1:three_prime_utr;Parent=Msa0186640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
