AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0638010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638010 MtrunA17_Chr4g0021061 97.477 436 5 3 1 433 1 433 0.0 861
Msa0638010 MtrunA17_Chr1g0200381 38.235 306 174 4 96 389 95 397 2.33e-66 219
Msa0638010 MtrunA17_Chr1g0200391 37.000 300 180 3 96 389 102 398 2.53e-62 211
Msa0638010 MtrunA17_Chr4g0070031 34.615 260 166 3 110 368 141 397 2.59e-45 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638010 AT3G50790.2 74.359 351 89 1 61 410 40 390 0.0 552
Msa0638010 AT3G50790.1 74.359 351 89 1 61 410 40 390 0.0 552
Msa0638010 AT5G49950.1 34.848 330 187 5 96 407 90 409 1.68e-64 216
Msa0638010 AT1G34340.1 36.304 303 178 3 96 386 96 395 5.02e-62 209
Msa0638010 AT2G03140.2 32.770 296 190 4 114 408 171 458 1.01e-41 158
Msa0638010 AT2G03140.12 32.770 296 190 4 114 408 171 458 1.12e-41 158
Msa0638010 AT2G03140.3 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.8 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.10 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.9 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.5 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.7 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.1 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.4 32.770 296 190 4 114 408 171 458 1.34e-41 158
Msa0638010 AT2G03140.6 31.402 328 207 6 90 408 140 458 3.24e-41 157
Msa0638010 AT2G03140.11 30.939 181 117 3 228 408 1 173 5.74e-19 90.5

Find 163 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCACTTGGGGTGGGTTGC+TGG 0.187173 4_3:+31513601 Msa0638010:CDS
TGAGGCTTTGCAGTTTCTTT+TGG 0.205272 4_3:+31511583 Msa0638010:intron
CATTGATTTCCTTCAATATC+TGG 0.213692 4_3:+31513666 Msa0638010:CDS
TCACACAACTGTCCTCTTTC+TGG 0.217999 4_3:+31511196 Msa0638010:CDS
GTCGCTCTCGACTGGGTTTC+CGG 0.218298 4_3:+31510623 Msa0638010:CDS
GCTTTACTCTTTGAAGATAT+TGG 0.238384 4_3:+31511420 Msa0638010:CDS
ATCAACTTCTTCTTCTTGTA+TGG 0.260802 4_3:-31510296 None:intergenic
GTCTCACTTGTTGAAAATCT+TGG 0.270386 4_3:-31511320 None:intergenic
ATGATCCGATTGCTCCTTCT+AGG 0.295162 4_3:+31512594 Msa0638010:CDS
TATATGCAGCCAGGCTTAAC+TGG 0.309996 4_3:+31510839 Msa0638010:intron
AGCCCCTTGGACTGATCCTT+TGG 0.318720 4_3:+31513642 Msa0638010:CDS
TACCCCGATGCTAATTTATA+TGG 0.330462 4_3:+31511121 Msa0638010:CDS
AAATATTCTCGTTCGTTACT+TGG 0.340135 4_3:+31511165 Msa0638010:CDS
ACTCTGTGAATTTAAATTGA+TGG 0.343126 4_3:+31510139 Msa0638010:five_prime_UTR
CATGCTACTATTTCTTTGCT+TGG 0.350677 4_3:-31510202 None:intergenic
TCGCCAATGCCAAGTCTGTT+AGG 0.351137 4_3:+31511466 Msa0638010:CDS
TTAATTAGAGCTCGAAATAA+AGG 0.354988 4_3:+31510893 Msa0638010:CDS
GCGGATCAGTCGCTCTCGAC+TGG 0.362920 4_3:+31510615 Msa0638010:CDS
GATGAAGGGGAAAGGGTTGT+AGG 0.365349 4_3:-31510498 None:intergenic
CATTCACAAACGGAACATTC+TGG 0.365899 4_3:+31513811 Msa0638010:three_prime_UTR
GCTGCAAGTTTGTGGAGCTT+TGG 0.366646 4_3:-31513701 None:intergenic
CCACAAACTTGCAGCAATCC+TGG 0.372161 4_3:+31513709 Msa0638010:CDS
TTCACCTGAGGAGTAGTAAC+AGG 0.373661 4_3:-31510959 None:intergenic
GTCACTACTAACAAGCAGTT+TGG 0.380575 4_3:-31513568 None:intergenic
TTTGTGCAATCCATTTGATT+TGG 0.385740 4_3:+31511228 Msa0638010:CDS
GTCAGGGGTTGATCGGAAAA+AGG 0.388914 4_3:-31510555 None:intergenic
TAATATTCACCATCCTTTGC+TGG 0.392974 4_3:-31513892 None:intergenic
TGACGGCGGAGGGTGACGTC+AGG 0.393858 4_3:-31510572 None:intergenic
ACCCTTTCCCCTTCATCACT+TGG 0.398845 4_3:+31510504 Msa0638010:CDS
GGGAGAGAGGTAAGAAGAAA+TGG 0.403095 4_3:-31510275 None:intergenic
CCAGGATTGCTGCAAGTTTG+TGG 0.405822 4_3:-31513709 None:intergenic
ATATAATTTCATTTAATGAA+TGG 0.406667 4_3:+31513928 Msa0638010:three_prime_UTR
CGAAGGATGGATGAGGTTGT+TGG 0.408841 4_3:-31510418 None:intergenic
TCTCGTTCGTTACTTGGGTC+AGG 0.424125 4_3:+31511171 Msa0638010:CDS
TCACGAGGAATTCCCCTAGA+AGG 0.445703 4_3:-31512608 None:intergenic
TATGGCGTTGGTTGGTCACT+CGG 0.451521 4_3:+31511139 Msa0638010:CDS
GACATCTAAAGGTGGTCACT+TGG 0.451985 4_3:+31513588 Msa0638010:CDS
TGTGGGTGGGTTGTACTTGT+AGG 0.453780 4_3:+31510223 Msa0638010:five_prime_UTR
ATGAAGGGGAAAGGGTTGTA+GGG 0.470477 4_3:-31510497 None:intergenic
AATGTCTCTTTATTAACTCC+AGG 0.470588 4_3:-31513727 None:intergenic
TTCTGAGGCAGTGACGGCGG+AGG 0.471105 4_3:-31510583 None:intergenic
ACGCCATATAAATTAGCATC+GGG 0.472441 4_3:-31511124 None:intergenic
CCAGGCTTAACTGGAGGTAG+TGG 0.472829 4_3:+31510848 Msa0638010:CDS
CGCCAATGCCAAGTCTGTTA+GGG 0.473616 4_3:+31511467 Msa0638010:CDS
TCAACTTCTTCTTCTTGTAT+GGG 0.478953 4_3:-31510295 None:intergenic
TCTGTTAGGGACTTTGATGA+TGG 0.481892 4_3:+31511480 Msa0638010:CDS
TCTGACACAACCAAATCAAA+TGG 0.482525 4_3:-31511238 None:intergenic
CTAAAGGTGGTCACTTGGGG+TGG 0.486145 4_3:+31513593 Msa0638010:CDS
AAAATGAGGAGAGGAGCGTT+CGG 0.487741 4_3:-31510665 None:intergenic
CTTCTTCTTGTATGGGAGAG+AGG 0.491606 4_3:-31510288 None:intergenic
AATATTCTCGTTCGTTACTT+GGG 0.493542 4_3:+31511166 Msa0638010:CDS
GTGGCGGTTCCAAGTGATGA+AGG 0.494493 4_3:-31510513 None:intergenic
AACACCTTTGCTGTGCATCC+AGG 0.498593 4_3:+31511669 Msa0638010:CDS
ATGGATGAGGTTGTTGGATG+AGG 0.499845 4_3:-31510412 None:intergenic
TCGTTGATTTGGAAGGCAAT+CGG 0.500370 4_3:+31510053 None:intergenic
TAAAGGTGGTCACTTGGGGT+GGG 0.500677 4_3:+31513594 Msa0638010:CDS
ACATCTAAAGGTGGTCACTT+GGG 0.501596 4_3:+31513589 Msa0638010:CDS
AGGCAAGCGACGGTCGTCAC+CGG 0.512387 4_3:-31510642 None:intergenic
TTATGACAAGGCTCTTTCCT+CGG 0.512891 4_3:+31511291 Msa0638010:CDS
GATGCTAATTTATATGGCGT+TGG 0.515110 4_3:+31511127 Msa0638010:CDS
AAAGATACAGCACCAGAAAG+AGG 0.516125 4_3:-31511208 None:intergenic
TGATCCGATTGCTCCTTCTA+GGG 0.518603 4_3:+31512595 Msa0638010:CDS
GACGGCGGAGGGTGACGTCA+GGG 0.519051 4_3:-31510571 None:intergenic
GGGTGACGTCAGGGGTTGAT+CGG 0.519552 4_3:-31510562 None:intergenic
TGTCAGTGGACATTGTTACT+TGG 0.519822 4_3:-31510388 None:intergenic
GGGAATGGCAACAGCAAGGG+TGG 0.520556 4_3:+31510244 Msa0638010:exon
AAGCTCCACTTGGAGCCCCT+TGG 0.524317 4_3:+31513629 Msa0638010:CDS
TAGCCCTGTTACTACTCCTC+AGG 0.524505 4_3:+31510955 Msa0638010:CDS
ATCAATTTAAATTCACAGAG+TGG 0.526257 4_3:-31510137 None:intergenic
GTGGGTGGGTTGTACTTGTA+GGG 0.526707 4_3:+31510224 Msa0638010:five_prime_UTR
TCCAAGTGATGAAGGGGAAA+GGG 0.528450 4_3:-31510505 None:intergenic
CTTCTGTCTCCAGATATTGA+AGG 0.530990 4_3:-31513675 None:intergenic
CGGGGTATCTATCAGAGACA+TGG 0.532744 4_3:-31511105 None:intergenic
CGGATCAGTCGCTCTCGACT+GGG 0.533982 4_3:+31510616 Msa0638010:CDS
CTTGAGTTCTGAGGCAGTGA+CGG 0.534168 4_3:-31510589 None:intergenic
CCACTACCTCCAGTTAAGCC+TGG 0.534467 4_3:-31510848 None:intergenic
CTTTAACAAAATTTATGACA+AGG 0.534604 4_3:+31511279 Msa0638010:CDS
CTAATTTATATGGCGTTGGT+TGG 0.534695 4_3:+31511131 Msa0638010:CDS
TTACTCTTTGAAGATATTGG+TGG 0.535835 4_3:+31511423 Msa0638010:CDS
CATCCATCCTTCGAAATACT+CGG 0.537417 4_3:+31510428 Msa0638010:CDS
GCTGGTGACGAAGCTCCACT+TGG 0.538367 4_3:+31513619 Msa0638010:CDS
CGTGTCACGTGAGTTAGAGA+TGG 0.538906 4_3:-31510473 None:intergenic
TTCAAGTGTAGTGTGACAGT+TGG 0.542188 4_3:+31513758 Msa0638010:exon
GAGTTAGAGATGGGAGGAAA+CGG 0.544685 4_3:-31510463 None:intergenic
GTCAAATGTTAGACTTGGGA+TGG 0.545120 4_3:-31510114 None:intergenic
TCATCAAGTACATTCACAAA+CGG 0.547987 4_3:+31513801 Msa0638010:three_prime_UTR
CCTCCGAGTATTTCGAAGGA+TGG 0.549587 4_3:-31510431 None:intergenic
TCAGATGCGGACTTCCGAAA+AGG 0.550315 4_3:+31511256 Msa0638010:CDS
TTCCAAGTGATGAAGGGGAA+AGG 0.551337 4_3:-31510506 None:intergenic
AATTCCTCGTGAAGATATCA+AGG 0.554084 4_3:+31512619 Msa0638010:CDS
TTGTTAGTAGTGACATCTAA+AGG 0.555470 4_3:+31513577 Msa0638010:CDS
ATTCCCCTAGAAGGAGCAAT+CGG 0.555800 4_3:-31512599 None:intergenic
CAGGCTTAACTGGAGGTAGT+GGG 0.559415 4_3:+31510849 Msa0638010:CDS
AAGAAATAGTAGCATGTGGG+TGG 0.560464 4_3:+31510209 Msa0638010:five_prime_UTR
TGTCACACTACACTTGAAGA+TGG 0.560746 4_3:-31513753 None:intergenic
ATCAAAGTCCCTAACAGACT+TGG 0.566652 4_3:-31511475 None:intergenic
TTCTGGAATACTCTTAGTCG+TGG 0.567464 4_3:+31513828 Msa0638010:three_prime_UTR
ACGGCGGAGGGTGACGTCAG+GGG 0.568008 4_3:-31510570 None:intergenic
CACTGCCTCAGAACTCAAGA+TGG 0.569186 4_3:+31510593 Msa0638010:CDS
AGTGGGTCAAATGTTAGACT+TGG 0.569326 4_3:-31510119 None:intergenic
CATCTAAAGGTGGTCACTTG+GGG 0.569461 4_3:+31513590 Msa0638010:CDS
GTCCCTAACAGACTTGGCAT+TGG 0.571770 4_3:-31511469 None:intergenic
TCACCATCCTTTGCTGGAGT+AGG 0.572050 4_3:-31513886 None:intergenic
TCAATTTAAATTCACAGAGT+GGG 0.572714 4_3:-31510136 None:intergenic
AGCAAAGAAATAGTAGCATG+TGG 0.573283 4_3:+31510205 Msa0638010:five_prime_UTR
AGTGGACATTGTTACTTGGA+CGG 0.581673 4_3:-31510384 None:intergenic
CACACTACACTTGAAGATGG+TGG 0.585286 4_3:-31513750 None:intergenic
GTGTTCAATAGTCGTGGCTG+TGG 0.585296 4_3:+31510929 Msa0638010:CDS
GGCGGTTCCAAGTGATGAAG+GGG 0.589583 4_3:-31510511 None:intergenic
TCAAATGTTAGACTTGGGAT+GGG 0.591509 4_3:-31510113 None:intergenic
TGTAGGGAATGGCAACAGCA+AGG 0.593091 4_3:+31510240 Msa0638010:exon
TCTGAGGCAGTGACGGCGGA+GGG 0.593993 4_3:-31510582 None:intergenic
GACTTGGCATTGGCGACCAG+TGG 0.595642 4_3:-31511459 None:intergenic
TCTTGTTCCTACTCCAGCAA+AGG 0.596813 4_3:+31513879 Msa0638010:three_prime_UTR
GTGTCACGTGAGTTAGAGAT+GGG 0.598185 4_3:-31510472 None:intergenic
GTTCCTACTCCAGCAAAGGA+TGG 0.598474 4_3:+31513883 Msa0638010:three_prime_UTR
TGGCGGTTCCAAGTGATGAA+GGG 0.599267 4_3:-31510512 None:intergenic
ATGACCAAAGGATCAGTCCA+AGG 0.601776 4_3:-31513646 None:intergenic
GTGGGTCAAATGTTAGACTT+GGG 0.606097 4_3:-31510118 None:intergenic
AACGCCATATAAATTAGCAT+CGG 0.607543 4_3:-31511125 None:intergenic
AGAGGTAAGAAGAAATGGTG+TGG 0.611249 4_3:-31510270 None:intergenic
GTAGGGAATGGCAACAGCAA+GGG 0.611463 4_3:+31510241 Msa0638010:exon
AACGACGAACCAGTAAAATG+AGG 0.612077 4_3:-31510679 None:intergenic
TCTACCTGGATGCACAGCAA+AGG 0.613318 4_3:-31511673 None:intergenic
AGTATTTCGAAGGATGGATG+AGG 0.614109 4_3:-31510425 None:intergenic
TGACCAAAGGATCAGTCCAA+GGG 0.614947 4_3:-31513645 None:intergenic
GAGCGTTCGGAGGCAAGCGA+CGG 0.617494 4_3:-31510652 None:intergenic
GTTGTTGTGTTCAATAGTCG+TGG 0.617662 4_3:+31510923 Msa0638010:CDS
ATCCGCCATCTTGAGTTCTG+AGG 0.619044 4_3:-31510598 None:intergenic
GGAATGGCAACAGCAAGGGT+GGG 0.621032 4_3:+31510245 Msa0638010:exon
TGGGTTGTACTTGTAGGGAA+TGG 0.621214 4_3:+31510229 Msa0638010:exon
TGATTTGGTTGTGTCAGATG+CGG 0.623966 4_3:+31511243 Msa0638010:CDS
TTGTTGGATGAGGTTGTCAG+TGG 0.627060 4_3:-31510402 None:intergenic
TTAGAGCTCGAAATAAAGGA+TGG 0.627421 4_3:+31510897 Msa0638010:CDS
TGCGCCTCCGAGTATTTCGA+AGG 0.629018 4_3:-31510435 None:intergenic
GATCCGATTGCTCCTTCTAG+GGG 0.631370 4_3:+31512596 Msa0638010:CDS
TGAAGGAAATCAATGACCAA+AGG 0.632751 4_3:-31513658 None:intergenic
TGGTGAATATAACATTCCAC+TGG 0.636196 4_3:+31511443 Msa0638010:CDS
AGGCTTAACTGGAGGTAGTG+GGG 0.637437 4_3:+31510850 Msa0638010:CDS
CGAAGATGGTTTCGACGTGG+CGG 0.637931 4_3:-31510529 None:intergenic
TGAAGGGGAAAGGGTTGTAG+GGG 0.640156 4_3:-31510496 None:intergenic
TTCAATAGTCGTGGCTGTGG+AGG 0.645656 4_3:+31510932 Msa0638010:CDS
AGAAATAGTAGCATGTGGGT+GGG 0.646070 4_3:+31510210 Msa0638010:five_prime_UTR
ATGAGGAGAGGAGCGTTCGG+AGG 0.646108 4_3:-31510662 None:intergenic
GAAAATCTTGGAGAGAGCCG+AGG 0.648146 4_3:-31511308 None:intergenic
TGCCTCAGAACTCAAGATGG+CGG 0.650311 4_3:+31510596 Msa0638010:CDS
GTCGTGGATGTGCTAACACG+TGG 0.651309 4_3:+31513844 Msa0638010:three_prime_UTR
GAGTTCTGAGGCAGTGACGG+CGG 0.651911 4_3:-31510586 None:intergenic
GCAAAGAAATAGTAGCATGT+GGG 0.652131 4_3:+31510206 Msa0638010:five_prime_UTR
GGGGTATCTATCAGAGACAT+GGG 0.655174 4_3:-31511104 None:intergenic
TCAGTCCAAGGGGCTCCAAG+TGG 0.656424 4_3:-31513634 None:intergenic
GTTTGAGTAGTAATCATCCA+CGG 0.656509 4_3:-31511614 None:intergenic
TTTGATGATGGACTCACCCG+TGG 0.662842 4_3:+31511492 Msa0638010:CDS
TCACGTGAGTTAGAGATGGG+AGG 0.683312 4_3:-31510469 None:intergenic
CGAACCAGTAAAATGAGGAG+AGG 0.683799 4_3:-31510674 None:intergenic
CGCCATATAAATTAGCATCG+GGG 0.685339 4_3:-31511123 None:intergenic
GACCAAAGGATCAGTCCAAG+GGG 0.688758 4_3:-31513644 None:intergenic
CATACCTTGATATCTTCACG+AGG 0.689305 4_3:-31512623 None:intergenic
ATGCAGCCAGGCTTAACTGG+AGG 0.690608 4_3:+31510842 Msa0638010:intron
TTAGTAGTGACATCTAAAGG+TGG 0.694576 4_3:+31513580 Msa0638010:CDS
TCACCTGAGGAGTAGTAACA+GGG 0.708705 4_3:-31510958 None:intergenic
CCATCCTTCGAAATACTCGG+AGG 0.746937 4_3:+31510431 Msa0638010:CDS
AAGCGAAGATGGTTTCGACG+TGG 0.747045 4_3:-31510532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAATTGTATCTA+CGG + chr4_3:31510993-31511012 Msa0638010:intron 10.0%
!!! AAATTTTGTTATAAAATTCT+GGG - chr4_3:31512879-31512898 None:intergenic 10.0%
!! ATATAATTTCATTTAATGAA+TGG + chr4_3:31513928-31513947 Msa0638010:three_prime_UTR 10.0%
!!! AACTTTTCTCTTTTATTTTT+GGG + chr4_3:31511388-31511407 Msa0638010:intron 15.0%
!!! ATAAACAGTGTTTTTTTTTT+TGG + chr4_3:31511872-31511891 Msa0638010:intron 15.0%
!! CAAAATAGTGAAATTTAAAT+GGG + chr4_3:31512254-31512273 Msa0638010:intron 15.0%
!!! ATATATTGCTTTTTAAACAA+TGG - chr4_3:31512539-31512558 None:intergenic 15.0%
!!! AATTTTGTTATAAAATTCTG+GGG - chr4_3:31512878-31512897 None:intergenic 15.0%
!!! GAAATTTTGTTATAAAATTC+TGG - chr4_3:31512880-31512899 None:intergenic 15.0%
!!! AGATAGATAGAATTTTACTT+TGG - chr4_3:31510725-31510744 None:intergenic 20.0%
!!! AAATTTTGTTAAAGCCTTTT+CGG - chr4_3:31511273-31511292 None:intergenic 20.0%
!! CTTTAACAAAATTTATGACA+AGG + chr4_3:31511279-31511298 Msa0638010:CDS 20.0%
!!! CAACTTTTCTCTTTTATTTT+TGG + chr4_3:31511387-31511406 Msa0638010:intron 20.0%
!! AGTATAACTGAATCAATAAA+TGG - chr4_3:31511820-31511839 None:intergenic 20.0%
!!! TTTTTTTTTTTGGACGAAAT+AGG + chr4_3:31511882-31511901 Msa0638010:intron 20.0%
!!! TCATTGACAATCTTTTTAAA+TGG - chr4_3:31512193-31512212 None:intergenic 20.0%
!! GCAAAATAGTGAAATTTAAA+TGG + chr4_3:31512253-31512272 Msa0638010:intron 20.0%
!! TTATGAAGTTAATTTCCAAA+TGG + chr4_3:31512304-31512323 Msa0638010:intron 20.0%
!! TATGAAGTTAATTTCCAAAT+GGG + chr4_3:31512305-31512324 Msa0638010:intron 20.0%
!! TTCTTGACTAAAAATGTATT+CGG + chr4_3:31512682-31512701 Msa0638010:intron 20.0%
!! TACTTAATATAGATAGACAT+AGG - chr4_3:31513375-31513394 None:intergenic 20.0%
!! TATGTCTATCTATATTAAGT+AGG + chr4_3:31513374-31513393 Msa0638010:intron 20.0%
!! ATGTCTATCTATATTAAGTA+GGG + chr4_3:31513375-31513394 Msa0638010:intron 20.0%
! TCAATTTAAATTCACAGAGT+GGG - chr4_3:31510139-31510158 None:intergenic 25.0%
! ATCAATTTAAATTCACAGAG+TGG - chr4_3:31510140-31510159 None:intergenic 25.0%
! ACTCTGTGAATTTAAATTGA+TGG + chr4_3:31510139-31510158 Msa0638010:five_prime_UTR 25.0%
! GTAAAATTCTATCTATCTAC+CGG + chr4_3:31510727-31510746 Msa0638010:intron 25.0%
! TAAAATTCTATCTATCTACC+GGG + chr4_3:31510728-31510747 Msa0638010:intron 25.0%
! TTAATTAGAGCTCGAAATAA+AGG + chr4_3:31510893-31510912 Msa0638010:CDS 25.0%
! AAAAAAAAATGATTCACCTG+AGG - chr4_3:31510974-31510993 None:intergenic 25.0%
!! TTTTTAAATTGTATCTACGG+TGG + chr4_3:31510996-31511015 Msa0638010:intron 25.0%
!! TCATACTAACTTGTAAAAGT+TGG + chr4_3:31511519-31511538 Msa0638010:intron 25.0%
! GTTGAAAAGATATAAACAAC+TGG + chr4_3:31511754-31511773 Msa0638010:intron 25.0%
! TGATTCAGTTATACTAAGTA+AGG + chr4_3:31511825-31511844 Msa0638010:intron 25.0%
! GATTCAGTTATACTAAGTAA+GGG + chr4_3:31511826-31511845 Msa0638010:intron 25.0%
!! GTTTTCATTATAACTGGATA+GGG - chr4_3:31511927-31511946 None:intergenic 25.0%
!! AGTTTTCATTATAACTGGAT+AGG - chr4_3:31511928-31511947 None:intergenic 25.0%
! TTCAATATGAAGCAATCAAA+AGG - chr4_3:31512000-31512019 None:intergenic 25.0%
! AATAAATGATAAGTCCCATT+TGG - chr4_3:31512322-31512341 None:intergenic 25.0%
!! AACAAAATTTCCACCATTTT+TGG + chr4_3:31512889-31512908 Msa0638010:intron 25.0%
!!! TGATTCAGTGGATTATTTTA+TGG + chr4_3:31513080-31513099 Msa0638010:intron 25.0%
!! ATTTTATGGTATATGTCACT+TGG + chr4_3:31513094-31513113 Msa0638010:intron 25.0%
! TTGGTTGTTAAGATATGTTT+GGG + chr4_3:31513113-31513132 Msa0638010:intron 25.0%
! AGTTATAATCTTGTAGTTGT+TGG + chr4_3:31513172-31513191 Msa0638010:intron 25.0%
! GTCTGTGTATTAAATATCAT+TGG - chr4_3:31513230-31513249 None:intergenic 25.0%
!!! AAGATGAACACTTTTTATGT+TGG + chr4_3:31513315-31513334 Msa0638010:intron 25.0%
!!! TAGGGTTAGTCTTTATTTTT+GGG + chr4_3:31513393-31513412 Msa0638010:intron 25.0%
TCAACTTCTTCTTCTTGTAT+GGG - chr4_3:31510298-31510317 None:intergenic 30.0%
ATCAACTTCTTCTTCTTGTA+TGG - chr4_3:31510299-31510318 None:intergenic 30.0%
AAAATTCTATCTATCTACCG+GGG + chr4_3:31510729-31510748 Msa0638010:intron 30.0%
!! TTCTATTCAGCATCGTTTTT+AGG + chr4_3:31511061-31511080 Msa0638010:CDS 30.0%
!! GTTTTTAGGAGATATGTATG+AGG + chr4_3:31511075-31511094 Msa0638010:CDS 30.0%
AACGCCATATAAATTAGCAT+CGG - chr4_3:31511128-31511147 None:intergenic 30.0%
AAATATTCTCGTTCGTTACT+TGG + chr4_3:31511165-31511184 Msa0638010:CDS 30.0%
AATATTCTCGTTCGTTACTT+GGG + chr4_3:31511166-31511185 Msa0638010:CDS 30.0%
TTTGTGCAATCCATTTGATT+TGG + chr4_3:31511228-31511247 Msa0638010:CDS 30.0%
! GCTTTACTCTTTGAAGATAT+TGG + chr4_3:31511420-31511439 Msa0638010:CDS 30.0%
! TTACTCTTTGAAGATATTGG+TGG + chr4_3:31511423-31511442 Msa0638010:CDS 30.0%
! TAGAGTCAAAATTTTCTACC+TGG - chr4_3:31511690-31511709 None:intergenic 30.0%
TACATATCCAAGAGAAACAA+GGG - chr4_3:31511724-31511743 None:intergenic 30.0%
! CAGTGAGTTTTCATTATAAC+TGG - chr4_3:31511933-31511952 None:intergenic 30.0%
TAATGTTGAGAGTCATCAAT+TGG - chr4_3:31511968-31511987 None:intergenic 30.0%
! GTGAGATTTAATGCCTTATT+TGG + chr4_3:31512059-31512078 Msa0638010:intron 30.0%
!! GATTTAATGCCTTATTTGGT+AGG + chr4_3:31512063-31512082 Msa0638010:intron 30.0%
!! GTGAAATTTAAATGGGCTAA+TGG + chr4_3:31512261-31512280 Msa0638010:intron 30.0%
AATGGAAGAACAAAGTGTAT+TGG + chr4_3:31512279-31512298 Msa0638010:intron 30.0%
!!! TCTGATGACTTTTTTTTTCC+AGG + chr4_3:31512565-31512584 Msa0638010:intron 30.0%
! CGATTTCATTTGTTGATGAA+TGG + chr4_3:31512771-31512790 Msa0638010:intron 30.0%
CATTTGAATTCCAAAAATGG+TGG - chr4_3:31512902-31512921 None:intergenic 30.0%
GAAAATGTGATGGTTGAAAA+AGG - chr4_3:31513006-31513025 None:intergenic 30.0%
TGGTACATAAGAAAATGTGA+TGG - chr4_3:31513016-31513035 None:intergenic 30.0%
! TCACATTTTCTTATGTACCA+AGG + chr4_3:31513016-31513035 Msa0638010:intron 30.0%
CTTGGTTGTTAAGATATGTT+TGG + chr4_3:31513112-31513131 Msa0638010:intron 30.0%
! CATTGGCTGTTGTTTAATAT+GGG - chr4_3:31513213-31513232 None:intergenic 30.0%
! TCATTGGCTGTTGTTTAATA+TGG - chr4_3:31513214-31513233 None:intergenic 30.0%
!!! GTAGGGTTAGTCTTTATTTT+TGG + chr4_3:31513392-31513411 Msa0638010:intron 30.0%
TGTTAATAAAGACTAACCCT+GGG - chr4_3:31513492-31513511 None:intergenic 30.0%
ATGTTAATAAAGACTAACCC+TGG - chr4_3:31513493-31513512 None:intergenic 30.0%
TTGTTAGTAGTGACATCTAA+AGG + chr4_3:31513577-31513596 Msa0638010:CDS 30.0%
!! CATTGATTTCCTTCAATATC+TGG + chr4_3:31513666-31513685 Msa0638010:CDS 30.0%
AATGTCTCTTTATTAACTCC+AGG - chr4_3:31513730-31513749 None:intergenic 30.0%
TCATCAAGTACATTCACAAA+CGG + chr4_3:31513801-31513820 Msa0638010:three_prime_UTR 30.0%
TCAAATGTTAGACTTGGGAT+GGG - chr4_3:31510116-31510135 None:intergenic 35.0%
! CATGCTACTATTTCTTTGCT+TGG - chr4_3:31510205-31510224 None:intergenic 35.0%
AGCAAAGAAATAGTAGCATG+TGG + chr4_3:31510205-31510224 Msa0638010:five_prime_UTR 35.0%
GCAAAGAAATAGTAGCATGT+GGG + chr4_3:31510206-31510225 Msa0638010:five_prime_UTR 35.0%
! ATGATGATGATGATGACAAG+TGG - chr4_3:31510352-31510371 None:intergenic 35.0%
TTGTTTGTTTATATGCAGCC+AGG + chr4_3:31510830-31510849 Msa0638010:intron 35.0%
TTAGAGCTCGAAATAAAGGA+TGG + chr4_3:31510897-31510916 Msa0638010:CDS 35.0%
AAGTGTCAACAAAATCACAG+TGG - chr4_3:31511023-31511042 None:intergenic 35.0%
TACCCCGATGCTAATTTATA+TGG + chr4_3:31511121-31511140 Msa0638010:CDS 35.0%
ACGCCATATAAATTAGCATC+GGG - chr4_3:31511127-31511146 None:intergenic 35.0%
GATGCTAATTTATATGGCGT+TGG + chr4_3:31511127-31511146 Msa0638010:CDS 35.0%
!! CTAATTTATATGGCGTTGGT+TGG + chr4_3:31511131-31511150 Msa0638010:CDS 35.0%
TCTGACACAACCAAATCAAA+TGG - chr4_3:31511241-31511260 None:intergenic 35.0%
! GTCTCACTTGTTGAAAATCT+TGG - chr4_3:31511323-31511342 None:intergenic 35.0%
TGGTGAATATAACATTCCAC+TGG + chr4_3:31511443-31511462 Msa0638010:CDS 35.0%
GTTTGAGTAGTAATCATCCA+CGG - chr4_3:31511617-31511636 None:intergenic 35.0%
! AGGTGTTTGAACGTGTTTTA+TGG - chr4_3:31511656-31511675 None:intergenic 35.0%
CTACATATCCAAGAGAAACA+AGG - chr4_3:31511725-31511744 None:intergenic 35.0%
GTGCAAATCACATTTGATAG+TGG - chr4_3:31511792-31511811 None:intergenic 35.0%
TTAAATCTCACAATCAGGAG+TGG - chr4_3:31512050-31512069 None:intergenic 35.0%
AGGCATTAAATCTCACAATC+AGG - chr4_3:31512055-31512074 None:intergenic 35.0%
!! TAATGCCTTATTTGGTAGGT+AGG + chr4_3:31512067-31512086 Msa0638010:intron 35.0%
ATCATCCTACCTACCAAATA+AGG - chr4_3:31512075-31512094 None:intergenic 35.0%
AGATCAAACACATGCACTTT+AGG - chr4_3:31512167-31512186 None:intergenic 35.0%
CAACTTAACAACTTACAAGC+TGG - chr4_3:31512364-31512383 None:intergenic 35.0%
GATTAAGGCTATTAGCAGTT+GGG - chr4_3:31512396-31512415 None:intergenic 35.0%
AGATTAAGGCTATTAGCAGT+TGG - chr4_3:31512397-31512416 None:intergenic 35.0%
AATTCCTCGTGAAGATATCA+AGG + chr4_3:31512619-31512638 Msa0638010:CDS 35.0%
GTGTAAAAGAGATCGAGAAT+AGG + chr4_3:31512710-31512729 Msa0638010:intron 35.0%
CGGCATTTGAATTCCAAAAA+TGG - chr4_3:31512905-31512924 None:intergenic 35.0%
TGTAGTTAAAATAGCGTCGT+CGG - chr4_3:31512925-31512944 None:intergenic 35.0%
GTTAATAAAGACTAACCCTG+GGG - chr4_3:31513491-31513510 None:intergenic 35.0%
AATGATCGTTCTATGTTGTC+AGG + chr4_3:31513540-31513559 Msa0638010:intron 35.0%
TTAGTAGTGACATCTAAAGG+TGG + chr4_3:31513580-31513599 Msa0638010:CDS 35.0%
TGAAGGAAATCAATGACCAA+AGG - chr4_3:31513661-31513680 None:intergenic 35.0%
TAATATTCACCATCCTTTGC+TGG - chr4_3:31513895-31513914 None:intergenic 35.0%
GTCAAATGTTAGACTTGGGA+TGG - chr4_3:31510117-31510136 None:intergenic 40.0%
GTGGGTCAAATGTTAGACTT+GGG - chr4_3:31510121-31510140 None:intergenic 40.0%
AGTGGGTCAAATGTTAGACT+TGG - chr4_3:31510122-31510141 None:intergenic 40.0%
AAGAAATAGTAGCATGTGGG+TGG + chr4_3:31510209-31510228 Msa0638010:five_prime_UTR 40.0%
AGAAATAGTAGCATGTGGGT+GGG + chr4_3:31510210-31510229 Msa0638010:five_prime_UTR 40.0%
AGAGGTAAGAAGAAATGGTG+TGG - chr4_3:31510273-31510292 None:intergenic 40.0%
! AGTGGACATTGTTACTTGGA+CGG - chr4_3:31510387-31510406 None:intergenic 40.0%
TGTCAGTGGACATTGTTACT+TGG - chr4_3:31510391-31510410 None:intergenic 40.0%
AGTATTTCGAAGGATGGATG+AGG - chr4_3:31510428-31510447 None:intergenic 40.0%
CATCCATCCTTCGAAATACT+CGG + chr4_3:31510428-31510447 Msa0638010:CDS 40.0%
AACGACGAACCAGTAAAATG+AGG - chr4_3:31510682-31510701 None:intergenic 40.0%
GTTGTTGTGTTCAATAGTCG+TGG + chr4_3:31510923-31510942 Msa0638010:CDS 40.0%
ATAGAACTGCACAAGCACAA+CGG - chr4_3:31511047-31511066 None:intergenic 40.0%
CGCCATATAAATTAGCATCG+GGG - chr4_3:31511126-31511145 None:intergenic 40.0%
AAAGATACAGCACCAGAAAG+AGG - chr4_3:31511211-31511230 None:intergenic 40.0%
!! TGATTTGGTTGTGTCAGATG+CGG + chr4_3:31511243-31511262 Msa0638010:CDS 40.0%
TTATGACAAGGCTCTTTCCT+CGG + chr4_3:31511291-31511310 Msa0638010:CDS 40.0%
ATCAAAGTCCCTAACAGACT+TGG - chr4_3:31511478-31511497 None:intergenic 40.0%
TCTGTTAGGGACTTTGATGA+TGG + chr4_3:31511480-31511499 Msa0638010:CDS 40.0%
AAGTTAGTATGACCTACCAC+GGG - chr4_3:31511511-31511530 None:intergenic 40.0%
CAAGTTAGTATGACCTACCA+CGG - chr4_3:31511512-31511531 None:intergenic 40.0%
TGCTGAGATACTCTTCTATG+AGG + chr4_3:31511565-31511584 Msa0638010:intron 40.0%
! TGAGGCTTTGCAGTTTCTTT+TGG + chr4_3:31511583-31511602 Msa0638010:intron 40.0%
! TTCTTTTGGATTCAAGTCCG+TGG + chr4_3:31511597-31511616 Msa0638010:CDS 40.0%
! GTTGTTACCCTTGTTTCTCT+TGG + chr4_3:31511714-31511733 Msa0638010:intron 40.0%
! CTGCTAATAGCCTTAATCTC+TGG + chr4_3:31512398-31512417 Msa0638010:intron 40.0%
!! ATAGCCTTAATCTCTGGAAC+TGG + chr4_3:31512404-31512423 Msa0638010:intron 40.0%
CTAACCAGTTCCAGAGATTA+AGG - chr4_3:31512411-31512430 None:intergenic 40.0%
!! AATAGCGGACATCACTTAGT+GGG - chr4_3:31512478-31512497 None:intergenic 40.0%
!! TAATAGCGGACATCACTTAG+TGG - chr4_3:31512479-31512498 None:intergenic 40.0%
CCAGAGATTAAGGCTAATAG+CGG - chr4_3:31512493-31512512 None:intergenic 40.0%
CTAACAAGTGCCAGAGATTA+AGG - chr4_3:31512503-31512522 None:intergenic 40.0%
CATACCTTGATATCTTCACG+AGG - chr4_3:31512626-31512645 None:intergenic 40.0%
CGTGCTTGGTATATAACAGA+AGG - chr4_3:31512975-31512994 None:intergenic 40.0%
AAAAGGATCAACAACGTGCT+TGG - chr4_3:31512989-31513008 None:intergenic 40.0%
! ATCACTGACAACTGATTCAG+TGG + chr4_3:31513068-31513087 Msa0638010:intron 40.0%
TCTCAAACTCCTTTAACCCT+TGG + chr4_3:31513456-31513475 Msa0638010:intron 40.0%
ATGATTGGACCAAGGGTTAA+AGG - chr4_3:31513468-31513487 None:intergenic 40.0%
GTCACTACTAACAAGCAGTT+TGG - chr4_3:31513571-31513590 None:intergenic 40.0%
ACATCTAAAGGTGGTCACTT+GGG + chr4_3:31513589-31513608 Msa0638010:CDS 40.0%
CTTCTGTCTCCAGATATTGA+AGG - chr4_3:31513678-31513697 None:intergenic 40.0%
TGTCACACTACACTTGAAGA+TGG - chr4_3:31513756-31513775 None:intergenic 40.0%
TTCAAGTGTAGTGTGACAGT+TGG + chr4_3:31513758-31513777 Msa0638010:exon 40.0%
CATTCACAAACGGAACATTC+TGG + chr4_3:31513811-31513830 Msa0638010:three_prime_UTR 40.0%
!! TTCTGGAATACTCTTAGTCG+TGG + chr4_3:31513828-31513847 Msa0638010:three_prime_UTR 40.0%
TGGGTTGTACTTGTAGGGAA+TGG + chr4_3:31510229-31510248 Msa0638010:exon 45.0%
GGGAGAGAGGTAAGAAGAAA+TGG - chr4_3:31510278-31510297 None:intergenic 45.0%
CTTCTTCTTGTATGGGAGAG+AGG - chr4_3:31510291-31510310 None:intergenic 45.0%
TTGTTGGATGAGGTTGTCAG+TGG - chr4_3:31510405-31510424 None:intergenic 45.0%
ATGGATGAGGTTGTTGGATG+AGG - chr4_3:31510415-31510434 None:intergenic 45.0%
GAGTTAGAGATGGGAGGAAA+CGG - chr4_3:31510466-31510485 None:intergenic 45.0%
GTGTCACGTGAGTTAGAGAT+GGG - chr4_3:31510475-31510494 None:intergenic 45.0%
ATGAAGGGGAAAGGGTTGTA+GGG - chr4_3:31510500-31510519 None:intergenic 45.0%
TCCAAGTGATGAAGGGGAAA+GGG - chr4_3:31510508-31510527 None:intergenic 45.0%
TTCCAAGTGATGAAGGGGAA+AGG - chr4_3:31510509-31510528 None:intergenic 45.0%
TCGGAAAAAGGAAGCGAAGA+TGG - chr4_3:31510546-31510565 None:intergenic 45.0%
!! AAAATGAGGAGAGGAGCGTT+CGG - chr4_3:31510668-31510687 None:intergenic 45.0%
CGAACCAGTAAAATGAGGAG+AGG - chr4_3:31510677-31510696 None:intergenic 45.0%
TTCTATCTATCTACCGGGGT+CGG + chr4_3:31510733-31510752 Msa0638010:intron 45.0%
TAGTAGCTAGAGTCACGAAG+TGG - chr4_3:31510778-31510797 None:intergenic 45.0%
TATATGCAGCCAGGCTTAAC+TGG + chr4_3:31510839-31510858 Msa0638010:intron 45.0%
TCACCTGAGGAGTAGTAACA+GGG - chr4_3:31510961-31510980 None:intergenic 45.0%
TTCACCTGAGGAGTAGTAAC+AGG - chr4_3:31510962-31510981 None:intergenic 45.0%
! GGGGTATCTATCAGAGACAT+GGG - chr4_3:31511107-31511126 None:intergenic 45.0%
TCACACAACTGTCCTCTTTC+TGG + chr4_3:31511196-31511215 Msa0638010:CDS 45.0%
!! CCGCTATTAGCCTTAATCTC+TGG + chr4_3:31512490-31512509 Msa0638010:intron 45.0%
ATGATCCGATTGCTCCTTCT+AGG + chr4_3:31512594-31512613 Msa0638010:CDS 45.0%
TGATCCGATTGCTCCTTCTA+GGG + chr4_3:31512595-31512614 Msa0638010:CDS 45.0%
ATTCCCCTAGAAGGAGCAAT+CGG - chr4_3:31512602-31512621 None:intergenic 45.0%
ATGTACCAAGGACACTCTTC+AGG + chr4_3:31513028-31513047 Msa0638010:intron 45.0%
GACATCTAAAGGTGGTCACT+TGG + chr4_3:31513588-31513607 Msa0638010:CDS 45.0%
CATCTAAAGGTGGTCACTTG+GGG + chr4_3:31513590-31513609 Msa0638010:CDS 45.0%
TGACCAAAGGATCAGTCCAA+GGG - chr4_3:31513648-31513667 None:intergenic 45.0%
ATGACCAAAGGATCAGTCCA+AGG - chr4_3:31513649-31513668 None:intergenic 45.0%
CACACTACACTTGAAGATGG+TGG - chr4_3:31513753-31513772 None:intergenic 45.0%
TCTTGTTCCTACTCCAGCAA+AGG + chr4_3:31513879-31513898 Msa0638010:three_prime_UTR 45.0%
!! TGTGGGTGGGTTGTACTTGT+AGG + chr4_3:31510223-31510242 Msa0638010:five_prime_UTR 50.0%
!! GTGGGTGGGTTGTACTTGTA+GGG + chr4_3:31510224-31510243 Msa0638010:five_prime_UTR 50.0%
TGTAGGGAATGGCAACAGCA+AGG + chr4_3:31510240-31510259 Msa0638010:exon 50.0%
GTAGGGAATGGCAACAGCAA+GGG + chr4_3:31510241-31510260 Msa0638010:exon 50.0%
CGAAGGATGGATGAGGTTGT+TGG - chr4_3:31510421-31510440 None:intergenic 50.0%
CCTCCGAGTATTTCGAAGGA+TGG - chr4_3:31510434-31510453 None:intergenic 50.0%
CCATCCTTCGAAATACTCGG+AGG + chr4_3:31510431-31510450 Msa0638010:CDS 50.0%
TCACGTGAGTTAGAGATGGG+AGG - chr4_3:31510472-31510491 None:intergenic 50.0%
CGTGTCACGTGAGTTAGAGA+TGG - chr4_3:31510476-31510495 None:intergenic 50.0%
TGAAGGGGAAAGGGTTGTAG+GGG - chr4_3:31510499-31510518 None:intergenic 50.0%
GATGAAGGGGAAAGGGTTGT+AGG - chr4_3:31510501-31510520 None:intergenic 50.0%
ACCCTTTCCCCTTCATCACT+TGG + chr4_3:31510504-31510523 Msa0638010:CDS 50.0%
TGGCGGTTCCAAGTGATGAA+GGG - chr4_3:31510515-31510534 None:intergenic 50.0%
AAGCGAAGATGGTTTCGACG+TGG - chr4_3:31510535-31510554 None:intergenic 50.0%
! GTCAGGGGTTGATCGGAAAA+AGG - chr4_3:31510558-31510577 None:intergenic 50.0%
!! CTTGAGTTCTGAGGCAGTGA+CGG - chr4_3:31510592-31510611 None:intergenic 50.0%
CACTGCCTCAGAACTCAAGA+TGG + chr4_3:31510593-31510612 Msa0638010:CDS 50.0%
TGCCTCAGAACTCAAGATGG+CGG + chr4_3:31510596-31510615 Msa0638010:CDS 50.0%
ATCCGCCATCTTGAGTTCTG+AGG - chr4_3:31510601-31510620 None:intergenic 50.0%
! CGCTCCTCTCCTCATTTTAC+TGG + chr4_3:31510670-31510689 Msa0638010:CDS 50.0%
CAGGCTTAACTGGAGGTAGT+GGG + chr4_3:31510849-31510868 Msa0638010:CDS 50.0%
AGGCTTAACTGGAGGTAGTG+GGG + chr4_3:31510850-31510869 Msa0638010:CDS 50.0%
GTGTTCAATAGTCGTGGCTG+TGG + chr4_3:31510929-31510948 Msa0638010:CDS 50.0%
TTCAATAGTCGTGGCTGTGG+AGG + chr4_3:31510932-31510951 Msa0638010:CDS 50.0%
TAGCCCTGTTACTACTCCTC+AGG + chr4_3:31510955-31510974 Msa0638010:CDS 50.0%
! CGGGGTATCTATCAGAGACA+TGG - chr4_3:31511108-31511127 None:intergenic 50.0%
!! TATGGCGTTGGTTGGTCACT+CGG + chr4_3:31511139-31511158 Msa0638010:CDS 50.0%
TCTCGTTCGTTACTTGGGTC+AGG + chr4_3:31511171-31511190 Msa0638010:CDS 50.0%
TCAGATGCGGACTTCCGAAA+AGG + chr4_3:31511256-31511275 Msa0638010:CDS 50.0%
GAAAATCTTGGAGAGAGCCG+AGG - chr4_3:31511311-31511330 None:intergenic 50.0%
TCGCCAATGCCAAGTCTGTT+AGG + chr4_3:31511466-31511485 Msa0638010:CDS 50.0%
CGCCAATGCCAAGTCTGTTA+GGG + chr4_3:31511467-31511486 Msa0638010:CDS 50.0%
GTCCCTAACAGACTTGGCAT+TGG - chr4_3:31511472-31511491 None:intergenic 50.0%
!! TTTGATGATGGACTCACCCG+TGG + chr4_3:31511492-31511511 Msa0638010:CDS 50.0%
! AACACCTTTGCTGTGCATCC+AGG + chr4_3:31511669-31511688 Msa0638010:CDS 50.0%
TCTACCTGGATGCACAGCAA+AGG - chr4_3:31511676-31511695 None:intergenic 50.0%
ATCTCACAATCAGGAGTGGC+AGG - chr4_3:31512046-31512065 None:intergenic 50.0%
TCACTTAGTGGGACTACGCT+TGG - chr4_3:31512467-31512486 None:intergenic 50.0%
GATCCGATTGCTCCTTCTAG+GGG + chr4_3:31512596-31512615 Msa0638010:CDS 50.0%
TCACGAGGAATTCCCCTAGA+AGG - chr4_3:31512611-31512630 None:intergenic 50.0%
ACCAAGGACACTCTTCAGGT+TGG + chr4_3:31513032-31513051 Msa0638010:intron 50.0%
!! TCCAACCTGAAGAGTGTCCT+TGG - chr4_3:31513036-31513055 None:intergenic 50.0%
AGACTAACCCTGGGGATGAT+TGG - chr4_3:31513483-31513502 None:intergenic 50.0%
TAAAGGTGGTCACTTGGGGT+GGG + chr4_3:31513594-31513613 Msa0638010:CDS 50.0%
GACCAAAGGATCAGTCCAAG+GGG - chr4_3:31513647-31513666 None:intergenic 50.0%
GCTGCAAGTTTGTGGAGCTT+TGG - chr4_3:31513704-31513723 None:intergenic 50.0%
CCAGGATTGCTGCAAGTTTG+TGG - chr4_3:31513712-31513731 None:intergenic 50.0%
CCACAAACTTGCAGCAATCC+TGG + chr4_3:31513709-31513728 Msa0638010:CDS 50.0%
GTTCCTACTCCAGCAAAGGA+TGG + chr4_3:31513883-31513902 Msa0638010:three_prime_UTR 50.0%
TCACCATCCTTTGCTGGAGT+AGG - chr4_3:31513889-31513908 None:intergenic 50.0%
GGAATGGCAACAGCAAGGGT+GGG + chr4_3:31510245-31510264 Msa0638010:exon 55.0%
TGCGCCTCCGAGTATTTCGA+AGG - chr4_3:31510438-31510457 None:intergenic 55.0%
GGCGGTTCCAAGTGATGAAG+GGG - chr4_3:31510514-31510533 None:intergenic 55.0%
GTGGCGGTTCCAAGTGATGA+AGG - chr4_3:31510516-31510535 None:intergenic 55.0%
CGAAGATGGTTTCGACGTGG+CGG - chr4_3:31510532-31510551 None:intergenic 55.0%
CAGAGTTCAAACTCCGACCC+CGG - chr4_3:31510749-31510768 None:intergenic 55.0%
ATGCAGCCAGGCTTAACTGG+AGG + chr4_3:31510842-31510861 Msa0638010:intron 55.0%
CCACTACCTCCAGTTAAGCC+TGG - chr4_3:31510851-31510870 None:intergenic 55.0%
CCAGGCTTAACTGGAGGTAG+TGG + chr4_3:31510848-31510867 Msa0638010:CDS 55.0%
!! ATGATGGACTCACCCGTGGT+AGG + chr4_3:31511496-31511515 Msa0638010:intron 55.0%
CAATCGGATCATTCGCTGCC+TGG - chr4_3:31512586-31512605 None:intergenic 55.0%
CCTGGGGATGATTGGACCAA+GGG - chr4_3:31513475-31513494 None:intergenic 55.0%
CCTTGGTCCAATCATCCCCA+GGG + chr4_3:31513473-31513492 Msa0638010:intron 55.0%
CTAAAGGTGGTCACTTGGGG+TGG + chr4_3:31513593-31513612 Msa0638010:CDS 55.0%
AGCCCCTTGGACTGATCCTT+TGG + chr4_3:31513642-31513661 Msa0638010:CDS 55.0%
GTCGTGGATGTGCTAACACG+TGG + chr4_3:31513844-31513863 Msa0638010:three_prime_UTR 55.0%
GGGAATGGCAACAGCAAGGG+TGG + chr4_3:31510244-31510263 Msa0638010:exon 60.0%
! GGGTGACGTCAGGGGTTGAT+CGG - chr4_3:31510565-31510584 None:intergenic 60.0%
!! GAGTTCTGAGGCAGTGACGG+CGG - chr4_3:31510589-31510608 None:intergenic 60.0%
CGGATCAGTCGCTCTCGACT+GGG + chr4_3:31510616-31510635 Msa0638010:CDS 60.0%
GTCGCTCTCGACTGGGTTTC+CGG + chr4_3:31510623-31510642 Msa0638010:CDS 60.0%
!! ATGAGGAGAGGAGCGTTCGG+AGG - chr4_3:31510665-31510684 None:intergenic 60.0%
CGGGGTCGGAGTTTGAACTC+TGG + chr4_3:31510747-31510766 Msa0638010:intron 60.0%
!! GACTTGGCATTGGCGACCAG+TGG - chr4_3:31511462-31511481 None:intergenic 60.0%
CCCTTGGTCCAATCATCCCC+AGG + chr4_3:31513472-31513491 Msa0638010:intron 60.0%
CCCTGGGGATGATTGGACCA+AGG - chr4_3:31513476-31513495 None:intergenic 60.0%
! GCTGGTGACGAAGCTCCACT+TGG + chr4_3:31513619-31513638 Msa0638010:CDS 60.0%
AAGCTCCACTTGGAGCCCCT+TGG + chr4_3:31513629-31513648 Msa0638010:CDS 60.0%
TCAGTCCAAGGGGCTCCAAG+TGG - chr4_3:31513637-31513656 None:intergenic 60.0%
! TCTGAGGCAGTGACGGCGGA+GGG - chr4_3:31510585-31510604 None:intergenic 65.0%
!! TTCTGAGGCAGTGACGGCGG+AGG - chr4_3:31510586-31510605 None:intergenic 65.0%
GCGGATCAGTCGCTCTCGAC+TGG + chr4_3:31510615-31510634 Msa0638010:CDS 65.0%
AGGCAAGCGACGGTCGTCAC+CGG - chr4_3:31510645-31510664 None:intergenic 65.0%
GAGCGTTCGGAGGCAAGCGA+CGG - chr4_3:31510655-31510674 None:intergenic 65.0%
!! GGTCACTTGGGGTGGGTTGC+TGG + chr4_3:31513601-31513620 Msa0638010:CDS 65.0%
ACGGCGGAGGGTGACGTCAG+GGG - chr4_3:31510573-31510592 None:intergenic 70.0%
GACGGCGGAGGGTGACGTCA+GGG - chr4_3:31510574-31510593 None:intergenic 70.0%
TGACGGCGGAGGGTGACGTC+AGG - chr4_3:31510575-31510594 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 31510067 31514079 31510067 ID=Msa0638010;Name=Msa0638010
chr4_3 mRNA 31510067 31514079 31510067 ID=Msa0638010-mRNA-1;Parent=Msa0638010;Name=Msa0638010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=181|1|1|1|1|1|7|311|433
chr4_3 exon 31510067 31510691 31510067 ID=Msa0638010-mRNA-1:exon:7383;Parent=Msa0638010-mRNA-1
chr4_3 exon 31510848 31510976 31510848 ID=Msa0638010-mRNA-1:exon:7384;Parent=Msa0638010-mRNA-1
chr4_3 exon 31511061 31511335 31511061 ID=Msa0638010-mRNA-1:exon:7385;Parent=Msa0638010-mRNA-1
chr4_3 exon 31511416 31511513 31511416 ID=Msa0638010-mRNA-1:exon:7386;Parent=Msa0638010-mRNA-1
chr4_3 exon 31511596 31511690 31511596 ID=Msa0638010-mRNA-1:exon:7387;Parent=Msa0638010-mRNA-1
chr4_3 exon 31512587 31512640 31512587 ID=Msa0638010-mRNA-1:exon:7388;Parent=Msa0638010-mRNA-1
chr4_3 exon 31513562 31514079 31513562 ID=Msa0638010-mRNA-1:exon:7389;Parent=Msa0638010-mRNA-1
chr4_3 five_prime_UTR 31510067 31510247 31510067 ID=Msa0638010-mRNA-1:five_prime_utr;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31510248 31510691 31510248 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31510848 31510976 31510848 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31511061 31511335 31511061 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31511416 31511513 31511416 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31511596 31511690 31511596 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31512587 31512640 31512587 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 CDS 31513562 31513768 31513562 ID=Msa0638010-mRNA-1:cds;Parent=Msa0638010-mRNA-1
chr4_3 three_prime_UTR 31513769 31514079 31513769 ID=Msa0638010-mRNA-1:three_prime_utr;Parent=Msa0638010-mRNA-1
Gene Sequence

>Msa0638010

ATGGCAACAGCAAGGGTGGGTTCCACACCATTTCTTCTTACCTCTCTCCCATACAAGAAGAAGAAGTTGATGAAGAACAATAATGCACTAATCAAATCATTCCACTTGTCATCATCATCATCATCTTCATCATCTTCCGTCCAAGTAACAATGTCCACTGACAACCTCATCCAACAACCTCATCCATCCTTCGAAATACTCGGAGGCGCACGTGACCGTTTCCTCCCATCTCTAACTCACGTGACACGCCCCTACAACCCTTTCCCCTTCATCACTTGGAACCGCCACGTCGAAACCATCTTCGCTTCCTTTTTCCGATCAACCCCTGACGTCACCCTCCGCCGTCACTGCCTCAGAACTCAAGATGGCGGATCAGTCGCTCTCGACTGGGTTTCCGGTGACGACCGTCGCTTGCCTCCGAACGCTCCTCTCCTCATTTTACTGCCAGGCTTAACTGGAGGTAGTGGGGATTCTTATGTTAGACACATGTTAATTAGAGCTCGAAATAAAGGATGGCGTGTTGTTGTGTTCAATAGTCGTGGCTGTGGAGGTAGCCCTGTTACTACTCCTCAGTTCTATTCAGCATCGTTTTTAGGAGATATGTATGAGGTTGTTTCCCATGTCTCTGATAGATACCCCGATGCTAATTTATATGGCGTTGGTTGGTCACTCGGAGCAAATATTCTCGTTCGTTACTTGGGTCAGGAATCACACAACTGTCCTCTTTCTGGTGCTGTATCTTTGTGCAATCCATTTGATTTGGTTGTGTCAGATGCGGACTTCCGAAAAGGCTTTAACAAAATTTATGACAAGGCTCTTTCCTCGGCTCTCTCCAAGATTTTCAACAAACATGCTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGTCGCCAATGCCAAGTCTGTTAGGGACTTTGATGATGGACTCACCCGTGTTTCTTTTGGATTCAAGTCCGTGGATGATTACTACTCAAACTCAAGCAGTTCAGATTCCATAAAACACGTTCAAACACCTTTGCTGTGCATCCAGGCAGCGAATGATCCGATTGCTCCTTCTAGGGGAATTCCTCGTGAAGATATCAAGGAAAATCCAAACTGCTTGTTAGTAGTGACATCTAAAGGTGGTCACTTGGGGTGGGTTGCTGGTGACGAAGCTCCACTTGGAGCCCCTTGGACTGATCCTTTGGTCATTGATTTCCTTCAATATCTGGAGACAGAAGCAGCCAAAGCTCCACAAACTTGCAGCAATCCTGGAGTTAATAAAGAGACATTCCACCATCTTCAAGTGTAG

Protein sequence

>Msa0638010

MATARVGSTPFLLTSLPYKKKKLMKNNNALIKSFHLSSSSSSSSSSVQVTMSTDNLIQQPHPSFEILGGARDRFLPSLTHVTRPYNPFPFITWNRHVETIFASFFRSTPDVTLRRHCLRTQDGGSVALDWVSGDDRRLPPNAPLLILLPGLTGGSGDSYVRHMLIRARNKGWRVVVFNSRGCGGSPVTTPQFYSASFLGDMYEVVSHVSDRYPDANLYGVGWSLGANILVRYLGQESHNCPLSGAVSLCNPFDLVVSDADFRKGFNKIYDKALSSALSKIFNKHALLFEDIGGEYNIPLVANAKSVRDFDDGLTRVSFGFKSVDDYYSNSSSSDSIKHVQTPLLCIQAANDPIAPSRGIPREDIKENPNCLLVVTSKGGHLGWVAGDEAPLGAPWTDPLVIDFLQYLETEAAKAPQTCSNPGVNKETFHHLQV*