Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466760 | AAZ67146.1 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 1.45e-89 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466760 | sp|Q94C74|GLYM2_ARATH | 73.050 | 141 | 28 | 2 | 1 | 131 | 1 | 141 | 2.53e-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466760 | Q45FE6 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 6.95e-90 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365820 | Msa1466760 | 0.822541 | 2.241664e-53 | -8.615850e-47 |
| Msa1461370 | Msa1466760 | 0.813385 | 2.629282e-51 | -8.615850e-47 |
| Msa0657710 | Msa1466760 | 0.800281 | 1.551614e-48 | -8.615850e-47 |
| Msa0187540 | Msa1466760 | 0.807544 | 4.799988e-50 | -8.615850e-47 |
| Msa1339990 | Msa1466760 | 0.812446 | 4.222833e-51 | -8.615850e-47 |
| Msa1341840 | Msa1466760 | 0.804869 | 1.756021e-49 | -8.615850e-47 |
| Msa0378350 | Msa1466760 | 0.815728 | 7.966255e-52 | -8.615850e-47 |
| Msa0400650 | Msa1466760 | 0.800256 | 1.569907e-48 | -8.615850e-47 |
| Msa0427700 | Msa1466760 | 0.800246 | 1.577276e-48 | -8.615850e-47 |
| Msa0481630 | Msa1466760 | 0.805864 | 1.086707e-49 | -8.615850e-47 |
| Msa1184890 | Msa1466760 | 0.803697 | 3.080744e-49 | -8.615850e-47 |
| Msa0574900 | Msa1466760 | 0.804483 | 2.113672e-49 | -8.615850e-47 |
| Msa0586450 | Msa1466760 | 0.801822 | 7.509060e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466760 | MtrunA17_Chr5g0428001 | 99.237 | 131 | 1 | 0 | 1 | 131 | 1 | 131 | 1.43e-93 | 278 |
| Msa1466760 | MtrunA17_Chr5g0411661 | 71.329 | 143 | 26 | 2 | 1 | 131 | 3 | 142 | 1.51e-62 | 199 |
| Msa1466760 | MtrunA17_Chr8g0378091 | 65.556 | 90 | 31 | 0 | 42 | 131 | 9 | 98 | 1.50e-37 | 132 |
| Msa1466760 | MtrunA17_Chr2g0277581 | 66.667 | 90 | 30 | 0 | 42 | 131 | 133 | 222 | 2.75e-36 | 130 |
| Msa1466760 | MtrunA17_Chr3g0121851 | 64.444 | 90 | 32 | 0 | 42 | 131 | 9 | 98 | 4.47e-36 | 128 |
| Msa1466760 | MtrunA17_Chr3g0115291 | 63.333 | 90 | 33 | 0 | 42 | 131 | 120 | 209 | 1.84e-33 | 122 |
| Msa1466760 | MtrunA17_Chr2g0285171 | 66.265 | 83 | 28 | 0 | 49 | 131 | 91 | 173 | 8.65e-33 | 120 |
| Msa1466760 | MtrunA17_Chr7g0268951 | 62.903 | 62 | 23 | 0 | 70 | 131 | 1 | 62 | 2.33e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466760 | AT5G26780.1 | 73.050 | 141 | 28 | 2 | 1 | 131 | 1 | 141 | 2.57e-66 | 209 |
| Msa1466760 | AT5G26780.4 | 73.050 | 141 | 28 | 2 | 1 | 131 | 1 | 141 | 2.57e-66 | 209 |
| Msa1466760 | AT5G26780.2 | 73.050 | 141 | 28 | 2 | 1 | 131 | 1 | 141 | 3.60e-66 | 209 |
| Msa1466760 | AT5G26780.3 | 73.050 | 141 | 28 | 2 | 1 | 131 | 1 | 141 | 3.60e-66 | 209 |
| Msa1466760 | AT4G37930.1 | 74.101 | 139 | 28 | 2 | 1 | 131 | 3 | 141 | 1.26e-63 | 202 |
| Msa1466760 | AT4G32520.2 | 71.264 | 87 | 25 | 0 | 45 | 131 | 83 | 169 | 2.74e-37 | 132 |
| Msa1466760 | AT4G32520.1 | 71.264 | 87 | 25 | 0 | 45 | 131 | 83 | 169 | 2.74e-37 | 132 |
| Msa1466760 | AT4G13930.1 | 65.556 | 90 | 31 | 0 | 42 | 131 | 9 | 98 | 6.23e-36 | 128 |
| Msa1466760 | AT4G13890.2 | 62.222 | 90 | 34 | 0 | 42 | 131 | 9 | 98 | 8.24e-35 | 124 |
| Msa1466760 | AT4G13890.1 | 62.222 | 90 | 34 | 0 | 42 | 131 | 9 | 98 | 2.27e-34 | 124 |
| Msa1466760 | AT1G22020.2 | 60.000 | 90 | 36 | 0 | 42 | 131 | 139 | 228 | 4.31e-32 | 119 |
| Msa1466760 | AT1G22020.1 | 60.000 | 90 | 36 | 0 | 42 | 131 | 139 | 228 | 4.31e-32 | 119 |
| Msa1466760 | AT1G36370.1 | 57.778 | 90 | 38 | 0 | 42 | 131 | 135 | 224 | 1.02e-31 | 118 |
Find 42 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCGTGCATTGGAAGCTTT+TGG | 0.259016 | tig0048736:+882 | Msa1466760:CDS |
| TGTGTGGGTATATTATTATA+TGG | 0.340946 | tig0048736:-119 | Msa1466760:intergenic |
| TGGCCATTGTGATTTGTGTT+TGG | 0.396454 | tig0048736:-164 | Msa1466760:intergenic |
| GAGAGAAGTTGGTTTGTTGA+TGG | 0.399841 | tig0048736:-211 | Msa1466760:intergenic |
| TATCCTGGTGCTAGATACTA+TGG | 0.403377 | tig0048736:+719 | Msa1466760:CDS |
| ATTATATGGGTTGGCGGTAG+TGG | 0.406463 | tig0048736:-105 | Msa1466760:intergenic |
| TCGATTATATCTTCGATCTC+AGG | 0.425038 | tig0048736:-497 | Msa1466760:intergenic |
| TGGGTTGGATCCAACACAAT+GGG | 0.433045 | tig0048736:+902 | Msa1466760:CDS |
| GTGTGGGTATATTATTATAT+GGG | 0.455358 | tig0048736:-118 | Msa1466760:intergenic |
| TGGTGAATTGCGTTGGAGGT+TGG | 0.463633 | tig0048736:-144 | Msa1466760:intergenic |
| TATGTACCTCCCCATTGTGT+TGG | 0.472134 | tig0048736:-912 | Msa1466760:intergenic |
| GCGTTGGAGGTTGGTGTGTG+TGG | 0.481655 | tig0048736:-135 | Msa1466760:intergenic |
| GGGTATATTATTATATGGGT+TGG | 0.485559 | tig0048736:-114 | Msa1466760:intergenic |
| ACCAAGCGATAGAGAGAAGT+TGG | 0.494543 | tig0048736:-222 | Msa1466760:intergenic |
| CGTTGGAGGTTGGTGTGTGT+GGG | 0.494642 | tig0048736:-134 | Msa1466760:intergenic |
| AAATACAGTGAAGGTTATCC+TGG | 0.496861 | tig0048736:+704 | Msa1466760:CDS |
| TGTTTGGTGAATTGCGTTGG+AGG | 0.498499 | tig0048736:-148 | Msa1466760:intergenic |
| AGAAGTTGGTTTGTTGATGG+TGG | 0.517830 | tig0048736:-208 | Msa1466760:intergenic |
| AAACAACTCAACGATCCTCT+TGG | 0.526204 | tig0048736:+464 | Msa1466760:CDS |
| ACCAACTTCTCTCTATCGCT+TGG | 0.526527 | tig0048736:+221 | Msa1466760:CDS |
| TATATTATTATATGGGTTGG+CGG | 0.531677 | tig0048736:-111 | Msa1466760:intergenic |
| CAACGATCCTCTTGGTGTAG+TGG | 0.537096 | tig0048736:+472 | Msa1466760:CDS |
| TTTGTGTCAGAAGCGTGCAT+TGG | 0.545541 | tig0048736:+872 | Msa1466760:CDS |
| TTGTGTTTGGTGAATTGCGT+TGG | 0.551693 | tig0048736:-151 | Msa1466760:intergenic |
| CCACCATAGTATCTAGCACC+AGG | 0.554761 | tig0048736:-722 | Msa1466760:intergenic |
| TTGTCGGTGATGCAAGCGGT+TGG | 0.559546 | tig0048736:+665 | Msa1466760:CDS |
| GGAACGTGAGTGAGCGTGGT+TGG | 0.575356 | tig0048736:-84 | Msa1466760:intergenic |
| AACACAAATCACAATGGCCA+TGG | 0.577099 | tig0048736:+167 | Msa1466760:exon |
| GGTGATGCAAGCGGTTGGAT+CGG | 0.589257 | tig0048736:+670 | Msa1466760:CDS |
| ACGTGAGTGAGCGTGGTTGG+TGG | 0.600429 | tig0048736:-81 | Msa1466760:intergenic |
| GTCGTTGTCGGTGATGCAAG+CGG | 0.608775 | tig0048736:+661 | Msa1466760:CDS |
| TTGGGTTGGATCCAACACAA+TGG | 0.608804 | tig0048736:+901 | Msa1466760:CDS |
| AGATTTGTGAGTGTGTTGAG+CGG | 0.629230 | tig0048736:-342 | Msa1466760:intergenic |
| ATGACGAATAAATACAGTGA+AGG | 0.634321 | tig0048736:+695 | Msa1466760:CDS |
| TAGTGGAACGTGAGTGAGCG+TGG | 0.642453 | tig0048736:-88 | Msa1466760:intergenic |
| AGTGAGTCTGCGAAGTGCCA+TGG | 0.645311 | tig0048736:-184 | Msa1466760:intergenic |
| TTTGATAAGGTACATTGACA+TGG | 0.655626 | tig0048736:+842 | Msa1466760:intron |
| GGGTTGGATCCAACACAATG+GGG | 0.659140 | tig0048736:+903 | Msa1466760:CDS |
| CCTGGTGCTAGATACTATGG+TGG | 0.671775 | tig0048736:+722 | Msa1466760:CDS |
| TCAGGATCCACTACACCAAG+AGG | 0.682850 | tig0048736:-479 | Msa1466760:intergenic |
| TTGGATCCAACACAATGGGG+AGG | 0.686303 | tig0048736:+906 | Msa1466760:CDS |
| TCACCAAACACAAATCACAA+TGG | 0.702440 | tig0048736:+161 | Msa1466760:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACACTATATATAACT+TGG | - | tig0048736:558-577 | Msa1466760:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTAATGTGC+AGG | + | tig0048736:607-626 | Msa1466760:intron | 15.0% |
| !!! | TTTTTTTTTTTTAATGTGCA+GGG | + | tig0048736:608-627 | Msa1466760:intron | 15.0% |
| !! | AAAAAACACTATATATAACT+TGG | - | tig0048736:558-577 | Msa1466760:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTAATGTGC+AGG | + | tig0048736:607-626 | Msa1466760:intron | 15.0% |
| !!! | TTTTTTTTTTTTAATGTGCA+GGG | + | tig0048736:608-627 | Msa1466760:intron | 15.0% |
| !! | AAAAAAAGTTAATCTCTGTT+TGG | - | tig0048736:594-613 | Msa1466760:intergenic | 20.0% |
| !! | TTTGCATTTGTAATTTGATA+AGG | + | tig0048736:829-848 | Msa1466760:intron | 20.0% |
| !! | AAAAAAAGTTAATCTCTGTT+TGG | - | tig0048736:594-613 | Msa1466760:intergenic | 20.0% |
| !! | TTTGCATTTGTAATTTGATA+AGG | + | tig0048736:829-848 | Msa1466760:intron | 20.0% |
| !!! | TATATTATTATATGGGTTGG+CGG | - | tig0048736:114-133 | Msa1442450:intergenic | 25.0% |
| ! | GTGTGGGTATATTATTATAT+GGG | - | tig0048736:121-140 | Msa1442450:intergenic | 25.0% |
| ! | TGTGTGGGTATATTATTATA+TGG | - | tig0048736:122-141 | Msa1442450:intergenic | 25.0% |
| ! | AAAGGTAGAAAATGAAAATG+CGG | - | tig0048736:279-298 | Msa1466760:intergenic | 25.0% |
| !!! | ATCAAAAAAAGTGCTTACAT+CGG | - | tig0048736:372-391 | Msa1466760:intergenic | 25.0% |
| !!! | TATATTATTATATGGGTTGG+CGG | - | tig0048736:114-133 | Msa1466760:intergenic | 25.0% |
| ! | GTGTGGGTATATTATTATAT+GGG | - | tig0048736:121-140 | Msa1466760:intergenic | 25.0% |
| ! | TGTGTGGGTATATTATTATA+TGG | - | tig0048736:122-141 | Msa1466760:intergenic | 25.0% |
| ! | AAAGGTAGAAAATGAAAATG+CGG | - | tig0048736:279-298 | Msa1466760:intergenic | 25.0% |
| !!! | ATCAAAAAAAGTGCTTACAT+CGG | - | tig0048736:372-391 | Msa1466760:intergenic | 25.0% |
| GGGTATATTATTATATGGGT+TGG | - | tig0048736:117-136 | Msa1442450:intergenic | 30.0% | |
| AGGACGTAAGAATAAAAGAA+AGG | - | tig0048736:297-316 | Msa1466760:intergenic | 30.0% | |
| ! | TTTTATTCTTACGTCCTGTT+TGG | + | tig0048736:300-319 | Msa1466760:intron | 30.0% |
| !! | TCAAAAAAAGTGCTTACATC+GGG | - | tig0048736:371-390 | Msa1466760:intergenic | 30.0% |
| !! | GAGAATTTTGAAAATTGCAG+TGG | + | tig0048736:438-457 | Msa1466760:intron | 30.0% |
| ! | AACGACGTAAAATTTTCTGA+AGG | - | tig0048736:647-666 | Msa1466760:intergenic | 30.0% |
| ! | AGAAAATTTTACGTCGTTGT+CGG | + | tig0048736:649-668 | Msa1466760:CDS | 30.0% |
| ATGACGAATAAATACAGTGA+AGG | + | tig0048736:695-714 | Msa1466760:CDS | 30.0% | |
| GAAATGAGTATGTTGAGTTA+TGG | + | tig0048736:744-763 | Msa1466760:intron | 30.0% | |
| !!! | GGTTATGATTGTTTTGTTTC+AGG | + | tig0048736:771-790 | Msa1466760:intron | 30.0% |
| TTTGATAAGGTACATTGACA+TGG | + | tig0048736:842-861 | Msa1466760:intron | 30.0% | |
| GGGTATATTATTATATGGGT+TGG | - | tig0048736:117-136 | Msa1466760:intergenic | 30.0% | |
| AGGACGTAAGAATAAAAGAA+AGG | - | tig0048736:297-316 | Msa1466760:intergenic | 30.0% | |
| ! | TTTTATTCTTACGTCCTGTT+TGG | + | tig0048736:300-319 | Msa1466760:intron | 30.0% |
| !! | TCAAAAAAAGTGCTTACATC+GGG | - | tig0048736:371-390 | Msa1466760:intergenic | 30.0% |
| !! | GAGAATTTTGAAAATTGCAG+TGG | + | tig0048736:438-457 | Msa1466760:intron | 30.0% |
| ! | AACGACGTAAAATTTTCTGA+AGG | - | tig0048736:647-666 | Msa1466760:intergenic | 30.0% |
| ! | AGAAAATTTTACGTCGTTGT+CGG | + | tig0048736:649-668 | Msa1466760:CDS | 30.0% |
| ATGACGAATAAATACAGTGA+AGG | + | tig0048736:695-714 | Msa1466760:CDS | 30.0% | |
| GAAATGAGTATGTTGAGTTA+TGG | + | tig0048736:744-763 | Msa1466760:intron | 30.0% | |
| !!! | GGTTATGATTGTTTTGTTTC+AGG | + | tig0048736:771-790 | Msa1466760:intron | 30.0% |
| TTTGATAAGGTACATTGACA+TGG | + | tig0048736:842-861 | Msa1466760:intron | 30.0% | |
| TCACCAAACACAAATCACAA+TGG | + | tig0048736:161-180 | Msa1466760:exon | 35.0% | |
| !! | CAAAAAAAGTGCTTACATCG+GGG | - | tig0048736:370-389 | Msa1466760:intergenic | 35.0% |
| TCGATTATATCTTCGATCTC+AGG | - | tig0048736:500-519 | Msa1466760:intergenic | 35.0% | |
| AACTTGAAAAAGCTCGTCAA+TGG | + | tig0048736:519-538 | Msa1466760:CDS | 35.0% | |
| AAATACAGTGAAGGTTATCC+TGG | + | tig0048736:704-723 | Msa1466760:CDS | 35.0% | |
| AGTATGTTGAGTTATGGATC+TGG | + | tig0048736:750-769 | Msa1466760:intron | 35.0% | |
| TCAGGTTCAGAACTTTGTTA+TGG | + | tig0048736:789-808 | Msa1466760:intron | 35.0% | |
| TCACCAAACACAAATCACAA+TGG | + | tig0048736:161-180 | Msa1466760:exon | 35.0% | |
| !! | CAAAAAAAGTGCTTACATCG+GGG | - | tig0048736:370-389 | Msa1466760:intergenic | 35.0% |
| TCGATTATATCTTCGATCTC+AGG | - | tig0048736:500-519 | Msa1466760:intergenic | 35.0% | |
| AACTTGAAAAAGCTCGTCAA+TGG | + | tig0048736:519-538 | Msa1466760:CDS | 35.0% | |
| AAATACAGTGAAGGTTATCC+TGG | + | tig0048736:704-723 | Msa1466760:CDS | 35.0% | |
| AGTATGTTGAGTTATGGATC+TGG | + | tig0048736:750-769 | Msa1466760:intron | 35.0% | |
| TCAGGTTCAGAACTTTGTTA+TGG | + | tig0048736:789-808 | Msa1466760:intron | 35.0% | |
| ! | TTGTGTTTGGTGAATTGCGT+TGG | - | tig0048736:154-173 | Msa1442450:intergenic | 40.0% |
| ! | TGGCCATTGTGATTTGTGTT+TGG | - | tig0048736:167-186 | Msa1466760:intergenic | 40.0% |
| AACACAAATCACAATGGCCA+TGG | + | tig0048736:167-186 | Msa1466760:exon | 40.0% | |
| !! | AGAAGTTGGTTTGTTGATGG+TGG | - | tig0048736:211-230 | Msa1466760:intergenic | 40.0% |
| !! | GAGAGAAGTTGGTTTGTTGA+TGG | - | tig0048736:214-233 | Msa1466760:intergenic | 40.0% |
| AGATTTGTGAGTGTGTTGAG+CGG | - | tig0048736:345-364 | Msa1466760:intergenic | 40.0% | |
| AAACAACTCAACGATCCTCT+TGG | + | tig0048736:464-483 | Msa1466760:CDS | 40.0% | |
| TGAAAAAGCTCGTCAATGGA+AGG | + | tig0048736:523-542 | Msa1466760:CDS | 40.0% | |
| ! | TATCCTGGTGCTAGATACTA+TGG | + | tig0048736:719-738 | Msa1466760:CDS | 40.0% |
| ! | TTGTGTTTGGTGAATTGCGT+TGG | - | tig0048736:154-173 | Msa1466760:intergenic | 40.0% |
| ! | TGGCCATTGTGATTTGTGTT+TGG | - | tig0048736:167-186 | Msa1466760:intergenic | 40.0% |
| AACACAAATCACAATGGCCA+TGG | + | tig0048736:167-186 | Msa1466760:exon | 40.0% | |
| !! | AGAAGTTGGTTTGTTGATGG+TGG | - | tig0048736:211-230 | Msa1466760:intergenic | 40.0% |
| !! | GAGAGAAGTTGGTTTGTTGA+TGG | - | tig0048736:214-233 | Msa1466760:intergenic | 40.0% |
| AGATTTGTGAGTGTGTTGAG+CGG | - | tig0048736:345-364 | Msa1466760:intergenic | 40.0% | |
| AAACAACTCAACGATCCTCT+TGG | + | tig0048736:464-483 | Msa1466760:CDS | 40.0% | |
| TGAAAAAGCTCGTCAATGGA+AGG | + | tig0048736:523-542 | Msa1466760:CDS | 40.0% | |
| ! | TATCCTGGTGCTAGATACTA+TGG | + | tig0048736:719-738 | Msa1466760:CDS | 40.0% |
| !! | ATTATATGGGTTGGCGGTAG+TGG | - | tig0048736:108-127 | Msa1442450:intergenic | 45.0% |
| ! | TGTTTGGTGAATTGCGTTGG+AGG | - | tig0048736:151-170 | Msa1442450:intergenic | 45.0% |
| ACCAACTTCTCTCTATCGCT+TGG | + | tig0048736:221-240 | Msa1466760:CDS | 45.0% | |
| ACCAAGCGATAGAGAGAAGT+TGG | - | tig0048736:225-244 | Msa1466760:intergenic | 45.0% | |
| GAAGATGACTGCAACCAAAC+AGG | - | tig0048736:317-336 | Msa1466760:intergenic | 45.0% | |
| AAAAGCTCGTCAATGGAAGG+TGG | + | tig0048736:526-545 | Msa1466760:intron | 45.0% | |
| ! | TTTGTGTCAGAAGCGTGCAT+TGG | + | tig0048736:872-891 | Msa1466760:CDS | 45.0% |
| ! | AAGCGTGCATTGGAAGCTTT+TGG | + | tig0048736:882-901 | Msa1466760:CDS | 45.0% |
| ! | AGCGTGCATTGGAAGCTTTT+GGG | + | tig0048736:883-902 | Msa1466760:CDS | 45.0% |
| !! | TGCATTGGAAGCTTTTGGGT+TGG | + | tig0048736:887-906 | Msa1466760:CDS | 45.0% |
| !! | TTGGGTTGGATCCAACACAA+TGG | + | tig0048736:901-920 | Msa1466760:CDS | 45.0% |
| ! | TGGGTTGGATCCAACACAAT+GGG | + | tig0048736:902-921 | Msa1466760:CDS | 45.0% |
| !! | ATTATATGGGTTGGCGGTAG+TGG | - | tig0048736:108-127 | Msa1466760:intergenic | 45.0% |
| ! | TGTTTGGTGAATTGCGTTGG+AGG | - | tig0048736:151-170 | Msa1466760:intergenic | 45.0% |
| ACCAACTTCTCTCTATCGCT+TGG | + | tig0048736:221-240 | Msa1466760:CDS | 45.0% | |
| ACCAAGCGATAGAGAGAAGT+TGG | - | tig0048736:225-244 | Msa1466760:intergenic | 45.0% | |
| GAAGATGACTGCAACCAAAC+AGG | - | tig0048736:317-336 | Msa1466760:intergenic | 45.0% | |
| AAAAGCTCGTCAATGGAAGG+TGG | + | tig0048736:526-545 | Msa1466760:intron | 45.0% | |
| ! | TTTGTGTCAGAAGCGTGCAT+TGG | + | tig0048736:872-891 | Msa1466760:CDS | 45.0% |
| ! | AAGCGTGCATTGGAAGCTTT+TGG | + | tig0048736:882-901 | Msa1466760:CDS | 45.0% |
| ! | AGCGTGCATTGGAAGCTTTT+GGG | + | tig0048736:883-902 | Msa1466760:CDS | 45.0% |
| !! | TGCATTGGAAGCTTTTGGGT+TGG | + | tig0048736:887-906 | Msa1466760:CDS | 45.0% |
| !! | TTGGGTTGGATCCAACACAA+TGG | + | tig0048736:901-920 | Msa1466760:CDS | 45.0% |
| ! | TGGGTTGGATCCAACACAAT+GGG | + | tig0048736:902-921 | Msa1466760:CDS | 45.0% |
| TGGTGAATTGCGTTGGAGGT+TGG | - | tig0048736:147-166 | Msa1442450:intergenic | 50.0% | |
| ! | CAACGATCCTCTTGGTGTAG+TGG | + | tig0048736:472-491 | Msa1466760:CDS | 50.0% |
| TCAGGATCCACTACACCAAG+AGG | - | tig0048736:482-501 | Msa1466760:intergenic | 50.0% | |
| CCACCATAGTATCTAGCACC+AGG | - | tig0048736:725-744 | Msa1466760:intergenic | 50.0% | |
| ! | CCTGGTGCTAGATACTATGG+TGG | + | tig0048736:722-741 | Msa1466760:CDS | 50.0% |
| GGGTTGGATCCAACACAATG+GGG | + | tig0048736:903-922 | Msa1466760:CDS | 50.0% | |
| TGGTGAATTGCGTTGGAGGT+TGG | - | tig0048736:147-166 | Msa1466760:intergenic | 50.0% | |
| ! | CAACGATCCTCTTGGTGTAG+TGG | + | tig0048736:472-491 | Msa1466760:CDS | 50.0% |
| TCAGGATCCACTACACCAAG+AGG | - | tig0048736:482-501 | Msa1466760:intergenic | 50.0% | |
| CCACCATAGTATCTAGCACC+AGG | - | tig0048736:725-744 | Msa1466760:intergenic | 50.0% | |
| ! | CCTGGTGCTAGATACTATGG+TGG | + | tig0048736:722-741 | Msa1466760:CDS | 50.0% |
| GGGTTGGATCCAACACAATG+GGG | + | tig0048736:903-922 | Msa1466760:CDS | 50.0% | |
| TAGTGGAACGTGAGTGAGCG+TGG | - | tig0048736:91-110 | Msa1442450:intergenic | 55.0% | |
| !! | CGTTGGAGGTTGGTGTGTGT+GGG | - | tig0048736:137-156 | Msa1442450:intergenic | 55.0% |
| ! | AGTGAGTCTGCGAAGTGCCA+TGG | - | tig0048736:187-206 | Msa1466760:intergenic | 55.0% |
| GTCGTTGTCGGTGATGCAAG+CGG | + | tig0048736:661-680 | Msa1466760:CDS | 55.0% | |
| TTGTCGGTGATGCAAGCGGT+TGG | + | tig0048736:665-684 | Msa1466760:CDS | 55.0% | |
| GGTGATGCAAGCGGTTGGAT+CGG | + | tig0048736:670-689 | Msa1466760:CDS | 55.0% | |
| TAGTGGAACGTGAGTGAGCG+TGG | - | tig0048736:91-110 | Msa1466760:intergenic | 55.0% | |
| !! | CGTTGGAGGTTGGTGTGTGT+GGG | - | tig0048736:137-156 | Msa1466760:intergenic | 55.0% |
| ! | AGTGAGTCTGCGAAGTGCCA+TGG | - | tig0048736:187-206 | Msa1466760:intergenic | 55.0% |
| GTCGTTGTCGGTGATGCAAG+CGG | + | tig0048736:661-680 | Msa1466760:CDS | 55.0% | |
| TTGTCGGTGATGCAAGCGGT+TGG | + | tig0048736:665-684 | Msa1466760:CDS | 55.0% | |
| GGTGATGCAAGCGGTTGGAT+CGG | + | tig0048736:670-689 | Msa1466760:CDS | 55.0% | |
| ACGTGAGTGAGCGTGGTTGG+TGG | - | tig0048736:84-103 | Msa1442450:intergenic | 60.0% | |
| GGAACGTGAGTGAGCGTGGT+TGG | - | tig0048736:87-106 | Msa1442450:intergenic | 60.0% | |
| !! | GCGTTGGAGGTTGGTGTGTG+TGG | - | tig0048736:138-157 | Msa1442450:intergenic | 60.0% |
| ACGTGAGTGAGCGTGGTTGG+TGG | - | tig0048736:84-103 | Msa1466760:intergenic | 60.0% | |
| GGAACGTGAGTGAGCGTGGT+TGG | - | tig0048736:87-106 | Msa1466760:intergenic | 60.0% | |
| !! | GCGTTGGAGGTTGGTGTGTG+TGG | - | tig0048736:138-157 | Msa1466760:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0048736 | gene | 66 | 926 | 66 | ID=Msa1466760;Name=Msa1466760 |
| tig0048736 | mRNA | 66 | 926 | 66 | ID=Msa1466760-mRNA-1;Parent=Msa1466760;Name=Msa1466760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=114|1|0.8|1|1|1|5|0|131 |
| tig0048736 | exon | 66 | 242 | 66 | ID=Msa1466760-mRNA-1:exon:25135;Parent=Msa1466760-mRNA-1 |
| tig0048736 | exon | 329 | 373 | 329 | ID=Msa1466760-mRNA-1:exon:25136;Parent=Msa1466760-mRNA-1 |
| tig0048736 | exon | 458 | 544 | 458 | ID=Msa1466760-mRNA-1:exon:25137;Parent=Msa1466760-mRNA-1 |
| tig0048736 | exon | 629 | 750 | 629 | ID=Msa1466760-mRNA-1:exon:25138;Parent=Msa1466760-mRNA-1 |
| tig0048736 | exon | 851 | 926 | 851 | ID=Msa1466760-mRNA-1:exon:25139;Parent=Msa1466760-mRNA-1 |
| tig0048736 | five_prime_UTR | 66 | 179 | 66 | ID=Msa1466760-mRNA-1:five_prime_utr;Parent=Msa1466760-mRNA-1 |
| tig0048736 | CDS | 180 | 242 | 180 | ID=Msa1466760-mRNA-1:cds;Parent=Msa1466760-mRNA-1 |
| tig0048736 | CDS | 329 | 373 | 329 | ID=Msa1466760-mRNA-1:cds;Parent=Msa1466760-mRNA-1 |
| tig0048736 | CDS | 458 | 544 | 458 | ID=Msa1466760-mRNA-1:cds;Parent=Msa1466760-mRNA-1 |
| tig0048736 | CDS | 629 | 750 | 629 | ID=Msa1466760-mRNA-1:cds;Parent=Msa1466760-mRNA-1 |
| tig0048736 | CDS | 851 | 926 | 851 | ID=Msa1466760-mRNA-1:cds;Parent=Msa1466760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
