AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378350 MtrunA17_Chr3g0130631 90.094 747 47 2 1 743 1 724 0.0 1078
Msa0378350 MtrunA17_Chr8g0384651 75.260 384 78 4 367 744 531 903 9.72e-109 352
Msa0378350 MtrunA17_Chr8g0384651 55.140 428 127 13 1 368 1 423 1.27e-92 309
Msa0378350 MtrunA17_Chr8g0372931 48.184 413 145 12 363 743 1054 1429 3.41e-78 274
Msa0378350 MtrunA17_Chr3g0125121 59.494 237 88 4 512 743 277 510 6.52e-74 249
Msa0378350 MtrunA17_Chr1g0155381 43.213 361 136 6 389 743 1061 1358 5.98e-65 235
Msa0378350 MtrunA17_Chr3g0141421 55.789 95 42 0 649 743 588 682 7.46e-32 132
Msa0378350 MtrunA17_Chr2g0304091 56.818 88 38 0 656 743 356 443 4.13e-28 118
Msa0378350 MtrunA17_Chr8g0376701 52.273 88 42 0 656 743 363 450 6.43e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378350 AT4G12780.3 56.522 345 135 6 413 743 523 866 7.41e-83 282
Msa0378350 AT4G12780.3 27.714 433 154 16 1 357 1 350 2.57e-16 84.0
Msa0378350 AT4G12770.2 54.491 334 106 7 453 743 548 878 9.28e-83 282
Msa0378350 AT4G12770.2 32.168 429 165 13 1 357 1 375 3.84e-33 137
Msa0378350 AT4G12780.1 56.522 345 135 6 413 743 550 893 9.51e-83 282
Msa0378350 AT4G12780.1 29.742 427 168 17 1 351 1 371 1.09e-26 117
Msa0378350 AT4G12770.1 54.030 335 108 7 453 743 548 880 8.28e-82 280
Msa0378350 AT4G12770.1 32.168 429 165 13 1 357 1 375 3.56e-33 137
Msa0378350 AT4G12780.2 54.420 362 133 8 413 743 523 883 5.05e-79 272
Msa0378350 AT4G12780.2 27.714 433 154 16 1 357 1 350 4.51e-16 83.2
Msa0378350 AT1G21660.1 52.743 237 105 3 507 743 283 512 4.08e-71 242
Msa0378350 AT4G36520.1 49.329 298 84 7 457 743 1171 1412 1.54e-64 234
Msa0378350 AT1G75310.2 42.604 338 135 7 406 743 1163 1441 2.54e-56 209
Msa0378350 AT1G75310.1 44.966 298 134 6 450 743 1167 1438 1.20e-52 198
Msa0378350 AT4G12780.5 56.863 255 93 7 413 652 550 802 2.19e-28 122
Msa0378350 AT4G12780.5 29.742 427 168 17 1 351 1 371 3.42e-26 115
Msa0378350 AT4G12780.6 56.863 255 93 7 413 652 523 775 2.56e-28 122
Msa0378350 AT4G12780.6 27.714 433 154 16 1 357 1 350 1.04e-15 82.0
Msa0378350 AT4G12780.4 56.863 255 93 7 413 652 523 775 2.56e-28 122
Msa0378350 AT4G12780.4 27.714 433 154 16 1 357 1 350 1.04e-15 82.0
Msa0378350 AT1G75100.1 46.296 108 58 0 636 743 533 640 1.14e-27 119
Msa0378350 AT1G30280.1 44.318 88 48 1 663 749 361 448 8.19e-20 93.6
Msa0378350 AT1G30280.2 48.148 81 41 1 663 742 361 441 2.07e-19 92.4

Find 205 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACACAGTTGTAGGTTTC+TGG 0.157218 3_1:-79115438 None:intergenic
TCCCTCAGCTGGAGAATTTC+AGG 0.198356 3_1:+79115636 Msa0378350:CDS
CCCTTCTGCTGCACTTTATC+AGG 0.215143 3_1:-79117255 None:intergenic
TACAGCCGCTACTGTTAAAA+AGG 0.236113 3_1:+79117203 Msa0378350:CDS
CAGCAGCTGCAGCTCTTTCT+CGG 0.239034 3_1:-79114700 None:intergenic
TTGTTATGTGTTCGTCTATC+AGG 0.263486 3_1:-79113936 None:intergenic
GAAAGATCATCAACAATATT+AGG 0.291136 3_1:-79115487 None:intergenic
AATTTACTAATCTCTTCTAA+TGG 0.298569 3_1:-79113696 None:intergenic
CAGCAGCCTTCTCAGCTCTT+TGG 0.302766 3_1:-79114448 None:intergenic
GATGATTTGATCAATGGATT+TGG 0.304715 3_1:+79111849 Msa0378350:CDS
TGAATGATGATCAGGTATTA+TGG 0.312370 3_1:+79117139 Msa0378350:intron
CCTCAGATCATGACGATATA+TGG 0.313995 3_1:+79114138 Msa0378350:CDS
CCTCAGCAGCAGCCCTTTCA+CGG 0.316110 3_1:-79114541 None:intergenic
AGCAGCTGCAGCTCTTTCTC+GGG 0.328646 3_1:-79114699 None:intergenic
TTAGAATCAGATGAATATTT+AGG 0.329043 3_1:-79114008 None:intergenic
TTCAATTGATTCTTTATCTC+TGG 0.335760 3_1:-79113895 None:intergenic
ATGATTTGATCAATGGATTT+GGG 0.344675 3_1:+79111850 Msa0378350:CDS
CACAGGCCCACTCCTGATAT+TGG 0.347676 3_1:+79113552 Msa0378350:intron
CGTTTATTAGCTACTGAATT+CGG 0.366518 3_1:+79111507 Msa0378350:CDS
ATTTACTAATCTCTTCTAAT+GGG 0.371043 3_1:-79113695 None:intergenic
TTGTGTTTGACCACGGTGTT+GGG 0.371244 3_1:-79113860 None:intergenic
GCAGAAATATATTGCAGAAA+AGG 0.382951 3_1:+79117290 Msa0378350:CDS
GGTGAAATTGGAAGATCCTT+TGG 0.383015 3_1:-79111574 None:intergenic
AGGAGGCCTTGGAGCGCTAT+TGG 0.387575 3_1:-79114786 None:intergenic
ATGTTTGAAGACACAGTTGT+AGG 0.389263 3_1:-79115445 None:intergenic
GATGATCTTCTCGGCGGATT+CGG 0.391097 3_1:+79111780 Msa0378350:CDS
TAAAGAGGTTTATCATAAAC+AGG 0.396140 3_1:-79111726 None:intergenic
TCTGATGATGAACCAATATC+AGG 0.396642 3_1:-79113564 None:intergenic
CTCAGCAGCAGCCCTTTCAC+GGG 0.403036 3_1:-79114540 None:intergenic
AACTCCTGATCATGTTCAAC+AGG 0.404831 3_1:-79113963 None:intergenic
GAAGTTAAGCGCTGGGCTGC+AGG 0.405772 3_1:+79116535 Msa0378350:CDS
GAGTTAGACCTAGGAGGCCT+TGG 0.407343 3_1:-79114797 None:intergenic
GAAGTTGAGAGAGGAAGTTT+TGG 0.413068 3_1:-79111595 None:intergenic
CGCTGGGCTGCAGGGAAAGA+GGG 0.414763 3_1:+79116544 Msa0378350:CDS
GTAGGTTTCTGGTTTACCTC+TGG 0.416290 3_1:-79115427 None:intergenic
GACGGACATGGAAGCGAAAC+CGG 0.417593 3_1:-79111697 None:intergenic
CCTCTGAAGGCGTTCCAATC+TGG 0.418587 3_1:-79115692 None:intergenic
CTGCTTCTCTCCTCTGACTT+GGG 0.419390 3_1:-79114248 None:intergenic
AGGGTCTTCTGTTGCATTGG+AGG 0.419847 3_1:-79113613 None:intergenic
CGAGGAGGAGGTGGTCTTGA+AGG 0.420028 3_1:-79114212 None:intergenic
GAAAATAAATAAACAAGAAA+AGG 0.420079 3_1:+79111331 Msa0378350:five_prime_UTR
ACTGCCTGCCAACCACATTC+AGG 0.420484 3_1:-79117162 None:intergenic
AGCTAGAGTGCGTGCTGAAA+GGG 0.423395 3_1:+79114490 Msa0378350:CDS
GTTGCGTTTGATGATCTTCT+CGG 0.423406 3_1:+79111771 Msa0378350:CDS
AAATCGTTCATCGTGAGATC+TGG 0.427946 3_1:-79111480 None:intergenic
GCGCTGGGCTGCAGGGAAAG+AGG 0.430219 3_1:+79116543 Msa0378350:CDS
CTCAGTAACCACACCTTTGA+CGG 0.433699 3_1:-79111887 None:intergenic
GATAGTTCATCAAATTCTAA+TGG 0.437018 3_1:+79113744 Msa0378350:CDS
ACTGCTTCTCTCCTCTGACT+TGG 0.437860 3_1:-79114249 None:intergenic
CCGTCATCGTCGTCGTAAAG+AGG 0.439814 3_1:-79111741 None:intergenic
TGACCACGGTGTTGGGGAAT+CGG 0.440553 3_1:-79113853 None:intergenic
CTGAAAGGGCCGCTGTTCAG+AGG 0.442095 3_1:+79114504 Msa0378350:CDS
CTGCTGCTGAGGCAAAGAAA+AGG 0.445504 3_1:+79114552 Msa0378350:CDS
AAGAAGGGGAAGTAGGCATT+TGG 0.450918 3_1:-79114046 None:intergenic
AGGGCTGAAAAGGCTGCTGC+AGG 0.454335 3_1:+79114572 Msa0378350:CDS
AAACCATCATTAAAATAAGA+AGG 0.455056 3_1:-79114062 None:intergenic
AAGAATTGAAAGGGAAAGGA+AGG 0.455730 3_1:+79114319 Msa0378350:CDS
GATTCCTGTTGAACATGATC+AGG 0.457157 3_1:+79113959 Msa0378350:CDS
TGTGGAAAGGGCTGCTGCAG+AGG 0.458750 3_1:+79114676 Msa0378350:CDS
CGTTCTTCAGCGTGAGGGGA+CGG 0.458812 3_1:+79114762 Msa0378350:CDS
GTAGGCATTTGGCCAGCTAC+TGG 0.464119 3_1:-79114035 None:intergenic
TCAGAGAGGACTAGCAGATA+TGG 0.464943 3_1:+79113828 Msa0378350:CDS
AAAAGGGTCTTCTGTTGCAT+TGG 0.465313 3_1:-79113616 None:intergenic
GAAGAGATCGGAATCATGAT+TGG 0.465418 3_1:-79111646 None:intergenic
AAAGGCTGCTGCAGGGGAAA+AGG 0.465673 3_1:+79114580 Msa0378350:CDS
ACCGGAGGTGCTACGAGAGA+TGG 0.465933 3_1:-79111679 None:intergenic
GAGAGCAAAGAAGAATTGAA+AGG 0.467658 3_1:+79114309 Msa0378350:CDS
ATAGCGCTCCAAGGCCTCCT+AGG 0.469434 3_1:+79114789 Msa0378350:CDS
CACAAGCTGAAGCCCGTGAA+AGG 0.469852 3_1:+79114528 Msa0378350:CDS
GGCAAAGAAAAGGGCTGAAA+AGG 0.470382 3_1:+79114562 Msa0378350:CDS
CCGTGAAAGGGCTGCTGCTG+AGG 0.470897 3_1:+79114541 Msa0378350:CDS
ATCATAAACAGGCGAGTTGA+CGG 0.471295 3_1:-79111715 None:intergenic
CCGTGGTCAAACACAAGTTC+AGG 0.471860 3_1:+79113867 Msa0378350:CDS
CGAATTCAGTAGCTAATAAA+CGG 0.475132 3_1:-79111506 None:intergenic
TCCAAAATATGAAGAAAAGT+TGG 0.477629 3_1:+79114115 Msa0378350:CDS
GCTCCAACTGATTCATCCTC+AGG 0.479394 3_1:+79113660 Msa0378350:CDS
GGAGAATTTCAGGAAGTTGA+AGG 0.481680 3_1:+79115646 Msa0378350:CDS
ATATGTACTGGTCGAGGAGG+AGG 0.482183 3_1:-79114224 None:intergenic
GGAAAGAGAAAATGAAAGAC+AGG 0.482527 3_1:+79114373 Msa0378350:CDS
TTAAAATAAGAAGGGGAAGT+AGG 0.484614 3_1:-79114053 None:intergenic
AAGCTAGAGTGCGTGCTGAA+AGG 0.485213 3_1:+79114489 Msa0378350:CDS
AGAGCAAAGAAGAATTGAAA+GGG 0.486134 3_1:+79114310 Msa0378350:CDS
CCCATCTCTCGTAGCACCTC+CGG 0.486573 3_1:+79111678 Msa0378350:CDS
AGAAAGGCGAAAAGCCAGAT+TGG 0.487061 3_1:+79115678 Msa0378350:CDS
CTTGTGTTTGACCACGGTGT+TGG 0.489404 3_1:-79113861 None:intergenic
ACGGTGGTTTCTTCCGTCTA+CGG 0.494243 3_1:-79111454 None:intergenic
AAAGAAGAATTGAAAGGGAA+AGG 0.494666 3_1:+79114315 Msa0378350:CDS
GTTCTTCAGCGTGAGGGGAC+GGG 0.495306 3_1:+79114763 Msa0378350:CDS
GAGAACAACAGAGACTTGAG+AGG 0.495826 3_1:+79114351 Msa0378350:CDS
CTTAGTACATACATATTGTA+AGG 0.496733 3_1:-79116590 None:intergenic
CGCGCTCCTGAGCCCTCTGA+AGG 0.498449 3_1:-79115705 None:intergenic
GTCGGTGGATCAGCAGTTAG+AGG 0.500658 3_1:-79111429 None:intergenic
AGAAAATGAAAGACAGGCTG+TGG 0.501628 3_1:+79114379 Msa0378350:CDS
ATTGGAAGAGTGAAAGGATC+GGG 0.502219 3_1:-79111628 None:intergenic
GGGATTAGAATTGAAGAGAT+CGG 0.502447 3_1:-79111658 None:intergenic
CATATCTGCCCGAGAATTGA+CGG 0.506680 3_1:-79114090 None:intergenic
AAACCATGAGCAGCAGCAAA+AGG 0.509397 3_1:+79114274 Msa0378350:CDS
GAGTTTCATCAAGCGCCATA+TGG 0.510705 3_1:+79113981 Msa0378350:CDS
AACCATCATTAAAATAAGAA+GGG 0.510911 3_1:-79114061 None:intergenic
CTGTGTCTTCAAACATAAAG+AGG 0.511873 3_1:+79115452 Msa0378350:CDS
TTTGAAGCATCTCCCTCAGC+TGG 0.511972 3_1:+79115625 Msa0378350:intron
TGCTGCTGAGGCAAAGAAAA+GGG 0.513805 3_1:+79114553 Msa0378350:CDS
TCAACAATATTAGGTGATGA+TGG 0.515248 3_1:-79115478 None:intergenic
CCGGAGGTGCTACGAGAGAT+GGG 0.515653 3_1:-79111678 None:intergenic
ACAAGCTGAAGCCCGTGAAA+GGG 0.521348 3_1:+79114529 Msa0378350:CDS
TGGACTTTGAAGTTAAGCGC+TGG 0.522927 3_1:+79116527 Msa0378350:CDS
CTTCCGTCTACGGTGGTCGG+TGG 0.522990 3_1:-79111444 None:intergenic
GAATATTTAGGCATGCCATA+TGG 0.526400 3_1:-79113996 None:intergenic
TCTGCTCTCTTTGAGTCTGT+AGG 0.527874 3_1:-79116172 None:intergenic
TCTGACTTGGGAATATGTAC+TGG 0.528885 3_1:-79114236 None:intergenic
GGACTTTGAAGTTAAGCGCT+GGG 0.530794 3_1:+79116528 Msa0378350:CDS
CTTCTAATGGGTCTGAAAAG+TGG 0.534760 3_1:-79113683 None:intergenic
TTTATACTAGGCAAAGGCAT+TGG 0.535677 3_1:+79116130 Msa0378350:intron
TCAGAGGCTTGCGGAAACAC+TGG 0.536353 3_1:+79116507 Msa0378350:intron
CAGAACGTGCTGCTGTGGAA+AGG 0.537152 3_1:+79114663 Msa0378350:CDS
GAATCGTTCTTCAGCGTGAG+GGG 0.539328 3_1:+79114758 Msa0378350:CDS
GAATTTCCAAGTCCATCAAA+AGG 0.540071 3_1:-79113789 None:intergenic
GGCTGAAAAGGCTGCTGCAG+GGG 0.540322 3_1:+79114574 Msa0378350:CDS
ATCATGATTGGAAGAGTGAA+AGG 0.543443 3_1:-79111634 None:intergenic
ATGGCCTGAATGTGGTTGGC+AGG 0.545019 3_1:+79117158 Msa0378350:CDS
TTGAAGGGGAAAGTGAAGAA+AGG 0.545134 3_1:+79115662 Msa0378350:CDS
TCAGCAGTTAGAGGAAGAGA+AGG 0.545352 3_1:-79111420 None:intergenic
AGAACGTGCTGCTGTGGAAA+GGG 0.545428 3_1:+79114664 Msa0378350:CDS
ATTGGCTGAGAAGAATCAAC+GGG 0.546286 3_1:+79116148 Msa0378350:CDS
GGAACGCCTTCAGAGGGCTC+AGG 0.554110 3_1:+79115699 Msa0378350:CDS
GCAGTTAGAGGAAGAGAAGG+AGG 0.556656 3_1:-79111417 None:intergenic
GAGAATTTCAGGAAGTTGAA+GGG 0.556708 3_1:+79115647 Msa0378350:CDS
GATTCTAATAAACCAGTAGC+TGG 0.557003 3_1:+79114023 Msa0378350:CDS
AGCTCGCCAAAGAGCTGAGA+AGG 0.557004 3_1:+79114442 Msa0378350:CDS
GAAGGTGGTGGAGCAGAAGT+TGG 0.558690 3_1:-79114194 None:intergenic
AAGTTAAGCGCTGGGCTGCA+GGG 0.559252 3_1:+79116536 Msa0378350:CDS
GGGCTGAAAAGGCTGCTGCA+GGG 0.559351 3_1:+79114573 Msa0378350:CDS
TCCTGATAAAGTGCAGCAGA+AGG 0.559973 3_1:+79117254 Msa0378350:CDS
TTTCTTCCGTCTACGGTGGT+CGG 0.560986 3_1:-79111447 None:intergenic
ATTCGGTCATTCGAAGAAAA+CGG 0.561173 3_1:+79111797 Msa0378350:CDS
TGTACTGGTCGAGGAGGAGG+TGG 0.561547 3_1:-79114221 None:intergenic
TCAGTAACCACACCTTTGAC+GGG 0.564015 3_1:-79111886 None:intergenic
TCCTGAAATTCTCCAGCTGA+GGG 0.565222 3_1:-79115637 None:intergenic
CCTCTTTACGACGACGATGA+CGG 0.565572 3_1:+79111741 Msa0378350:CDS
TAAAGCAGAACGTGCTGCTG+TGG 0.566166 3_1:+79114658 Msa0378350:CDS
TGGCCTGAGGATGAATCAGT+TGG 0.568887 3_1:-79113663 None:intergenic
TGAGCAGCAGCAAAAGGAGA+TGG 0.568955 3_1:+79114280 Msa0378350:CDS
TGAAAGGGCCGCTGTTCAGA+GGG 0.569740 3_1:+79114505 Msa0378350:CDS
ATGTGAATCGAAGTTGAGAG+AGG 0.572513 3_1:-79111604 None:intergenic
AACAGGCGAGTTGACGGACA+TGG 0.572944 3_1:-79111709 None:intergenic
TGAATCGTTCTTCAGCGTGA+GGG 0.573586 3_1:+79114757 Msa0378350:CDS
GCTGGGCTGCAGGGAAAGAG+GGG 0.574702 3_1:+79116545 Msa0378350:CDS
CCAGATTGGAACGCCTTCAG+AGG 0.574933 3_1:+79115692 Msa0378350:CDS
ATATCTGCCCGAGAATTGAC+GGG 0.576043 3_1:-79114089 None:intergenic
ATAGCAAGTCCTCCCGTCAA+AGG 0.576669 3_1:+79111874 Msa0378350:CDS
GTCCTCTCTGATGAAAATGC+TGG 0.577003 3_1:-79113816 None:intergenic
GATTGGAAGAGTGAAAGGAT+CGG 0.577344 3_1:-79111629 None:intergenic
GAGAAAGAGCTGCAGCTGCA+AGG 0.578548 3_1:+79114615 Msa0378350:CDS
GGAGGTGGTCTTGAAGGTGG+TGG 0.579037 3_1:-79114206 None:intergenic
TTCCTGAAATTCTCCAGCTG+AGG 0.579563 3_1:-79115638 None:intergenic
GTGAAGAATGAGAGAGGTGT+CGG 0.580582 3_1:+79111819 Msa0378350:CDS
GGAGGAGGTGGTCTTGAAGG+TGG 0.581949 3_1:-79114209 None:intergenic
GATCCACCGACCACCGTAGA+CGG 0.589033 3_1:+79111441 Msa0378350:five_prime_UTR
TGATGCACAATTTCAGCCAG+AGG 0.589144 3_1:+79115411 Msa0378350:CDS
CCATATATCGTCATGATCTG+AGG 0.593418 3_1:-79114138 None:intergenic
TTGAATCGTTCTTCAGCGTG+AGG 0.593892 3_1:+79114756 Msa0378350:CDS
GACGGGCCAATAGCGCTCCA+AGG 0.596506 3_1:+79114780 Msa0378350:CDS
ACCATCATTAAAATAAGAAG+GGG 0.596875 3_1:-79114060 None:intergenic
TTGGGAATATGTACTGGTCG+AGG 0.596893 3_1:-79114230 None:intergenic
AAAACGGTGAAGAATGAGAG+AGG 0.603787 3_1:+79111813 Msa0378350:CDS
CAGATTGGAACGCCTTCAGA+GGG 0.608050 3_1:+79115693 Msa0378350:CDS
ATTGGTGCAGATTTGCCTTG+AGG 0.610923 3_1:-79111537 None:intergenic
AATATATTTCTGCTGAAGAG+TGG 0.620107 3_1:-79117280 None:intergenic
CATTGGCTGAGAAGAATCAA+CGG 0.622100 3_1:+79116147 Msa0378350:CDS
GATGAACCAATATCAGGAGT+GGG 0.623236 3_1:-79113558 None:intergenic
TTGGATGATGATGATGACAT+TGG 0.623868 3_1:-79111555 None:intergenic
TCATGACGATATATGGCTAA+CGG 0.623870 3_1:+79114145 Msa0378350:CDS
CCTGATAAAGTGCAGCAGAA+GGG 0.624350 3_1:+79117255 Msa0378350:CDS
GAATTCGGTTTGAAACCTCA+AGG 0.625188 3_1:+79111522 Msa0378350:CDS
TCAGAGGGCTCAGGAGCGCG+CGG 0.626791 3_1:+79115708 Msa0378350:CDS
AGAATTTCAGGAAGTTGAAG+GGG 0.630146 3_1:+79115648 Msa0378350:CDS
TGATGAACCAATATCAGGAG+TGG 0.633810 3_1:-79113559 None:intergenic
ATAAGATACTAAATCTGCAG+AGG 0.634146 3_1:-79117542 None:intergenic
CTCACAGAAGAGTTAGACCT+AGG 0.635511 3_1:-79114806 None:intergenic
TGAGGATGAATCAGTTGGAG+CGG 0.639821 3_1:-79113658 None:intergenic
ATGTCATCATCATCATCCAA+AGG 0.640651 3_1:+79111558 Msa0378350:CDS
TCGTGAGATCTGGTGAACGG+TGG 0.642494 3_1:-79111470 None:intergenic
TCATCGTGAGATCTGGTGAA+CGG 0.643199 3_1:-79111473 None:intergenic
GGTCAAACACAAGTTCAGGT+TGG 0.644850 3_1:+79113871 Msa0378350:CDS
GCAGCAGCAAAAGGAGATGG+AGG 0.644915 3_1:+79114283 Msa0378350:CDS
CAGTTAGAGGAAGAGAAGGA+GGG 0.646142 3_1:-79111416 None:intergenic
TATTATGGCCTGAATGTGGT+TGG 0.649392 3_1:+79117154 Msa0378350:CDS
GTGGTTTCTTCCGTCTACGG+TGG 0.651169 3_1:-79111451 None:intergenic
AGCTTGTGCCCTCTGAACAG+CGG 0.653667 3_1:-79114513 None:intergenic
AGAACAACAGAGACTTGAGA+GGG 0.653891 3_1:+79114352 Msa0378350:CDS
TGTGTTTGACCACGGTGTTG+GGG 0.654993 3_1:-79113859 None:intergenic
TGTGTCTTCAAACATAAAGA+GGG 0.655665 3_1:+79115453 Msa0378350:CDS
GAGAAGATCATCAAACGCAA+CGG 0.656158 3_1:-79111769 None:intergenic
ACATTGATTTCAGAGGCTTG+CGG 0.656214 3_1:+79116498 Msa0378350:intron
AGTACATATTCCCAAGTCAG+AGG 0.661965 3_1:+79114238 Msa0378350:CDS
ACAGAAGAGTTAGACCTAGG+AGG 0.662653 3_1:-79114803 None:intergenic
CCTGAACTTGTGTTTGACCA+CGG 0.670451 3_1:-79113867 None:intergenic
GGAATATGTACTGGTCGAGG+AGG 0.673478 3_1:-79114227 None:intergenic
GTAACCACACCTTTGACGGG+AGG 0.676329 3_1:-79111883 None:intergenic
CAGGTATTATGGCCTGAATG+TGG 0.679133 3_1:+79117150 Msa0378350:intron
AGTACATACATATTGTAAGG+TGG 0.690241 3_1:-79116587 None:intergenic
TGGGTCTGAAAAGTGGCCTG+AGG 0.703931 3_1:-79113676 None:intergenic
GCGTTTGATGATCTTCTCGG+CGG 0.720705 3_1:+79111774 Msa0378350:CDS
GGACATGGAAGCGAAACCGG+AGG 0.721282 3_1:-79111694 None:intergenic
GCACCGATTCCCCAACACCG+TGG 0.760752 3_1:+79113850 Msa0378350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAATTAATTTTGTAT+AGG - chr3_1:79115147-79115166 None:intergenic 10.0%
!!! AAAAGAGTTTTAAATAAAAA+AGG + chr3_1:79115251-79115270 Msa0378350:intron 10.0%
!!! AAAGAGTTTTAAATAAAAAA+GGG + chr3_1:79115252-79115271 Msa0378350:intron 10.0%
!!! TATTTATTTTCTAAAGTAGT+GGG - chr3_1:79111322-79111341 None:intergenic 15.0%
!!! TTATTTATTTTCTAAAGTAG+TGG - chr3_1:79111323-79111342 None:intergenic 15.0%
!! GAAAATAAATAAACAAGAAA+AGG + chr3_1:79111331-79111350 Msa0378350:five_prime_UTR 15.0%
!! TTAAGTTTAAACACAATTAT+CGG - chr3_1:79112356-79112375 None:intergenic 15.0%
!!! AAATGACAATTTAAAATTTG+AGG - chr3_1:79112410-79112429 None:intergenic 15.0%
!!! CTGATTCAAATATTTTAAAA+GGG - chr3_1:79113635-79113654 None:intergenic 15.0%
!! AAACATTATTTATACTAAAG+CGG + chr3_1:79114843-79114862 Msa0378350:intron 15.0%
!! CATTAATAATAAAAATGATG+GGG - chr3_1:79114899-79114918 None:intergenic 15.0%
!! GCATTAATAATAAAAATGAT+GGG - chr3_1:79114900-79114919 None:intergenic 15.0%
!! TGCATTAATAATAAAAATGA+TGG - chr3_1:79114901-79114920 None:intergenic 15.0%
!!! ATCATTTTTATTATTAATGC+AGG + chr3_1:79114900-79114919 Msa0378350:intron 15.0%
!! AAATAACATTAATGTTTCAT+TGG - chr3_1:79115013-79115032 None:intergenic 15.0%
!!! AAACTCTTTTAAAATAAAAG+TGG - chr3_1:79115241-79115260 None:intergenic 15.0%
!!! TTTAGTTCAAAATTGTAAAT+TGG - chr3_1:79115819-79115838 None:intergenic 15.0%
!!! TTTTTCTTTTTAACAACTAA+TGG - chr3_1:79115979-79115998 None:intergenic 15.0%
!! ATATAATAATAGATAGCATA+AGG - chr3_1:79116644-79116663 None:intergenic 15.0%
!! GAAAGAATATTAAAAAAATC+TGG - chr3_1:79116690-79116709 None:intergenic 15.0%
!! TTGAATGTAATCATATTTGT+TGG + chr3_1:79112165-79112184 Msa0378350:intron 20.0%
!!! AGTGCATTTTAGAATAATAA+CGG + chr3_1:79112329-79112348 Msa0378350:intron 20.0%
!! TAAGTTTAAACACAATTATC+GGG - chr3_1:79112355-79112374 None:intergenic 20.0%
!! TAATTGTGTTTAAACTTAAG+TGG + chr3_1:79112357-79112376 Msa0378350:intron 20.0%
!! TATTCAAGGATAAAAGAATA+TGG - chr3_1:79112492-79112511 None:intergenic 20.0%
!!! TATTCTTTTATCCTTGAATA+TGG + chr3_1:79112492-79112511 Msa0378350:intron 20.0%
!!! CTTTTTGCTTATTATGTATT+TGG + chr3_1:79112758-79112777 Msa0378350:intron 20.0%
!!! TCAGTGATTTAATTTTTGAA+CGG + chr3_1:79113066-79113085 Msa0378350:intron 20.0%
!! AGATTTGAATTGAAATCTTA+TGG + chr3_1:79113377-79113396 Msa0378350:intron 20.0%
!! AACTAATACGTGAAAAATAA+GGG - chr3_1:79113486-79113505 None:intergenic 20.0%
!!! GCTGATTCAAATATTTTAAA+AGG - chr3_1:79113636-79113655 None:intergenic 20.0%
!! ATTTACTAATCTCTTCTAAT+GGG - chr3_1:79113698-79113717 None:intergenic 20.0%
!! AATTTACTAATCTCTTCTAA+TGG - chr3_1:79113699-79113718 None:intergenic 20.0%
!! TTAGAATCAGATGAATATTT+AGG - chr3_1:79114011-79114030 None:intergenic 20.0%
!! AACCATCATTAAAATAAGAA+GGG - chr3_1:79114064-79114083 None:intergenic 20.0%
!! AAACCATCATTAAAATAAGA+AGG - chr3_1:79114065-79114084 None:intergenic 20.0%
!! AAATAATGTTTATCAAGACA+TGG - chr3_1:79114834-79114853 None:intergenic 20.0%
!!! TAAATAGTTAAGGGTATAAT+AGG - chr3_1:79115038-79115057 None:intergenic 20.0%
!! AGAGAGTAATAAATAGTTAA+GGG - chr3_1:79115047-79115066 None:intergenic 20.0%
!! AAGAGAGTAATAAATAGTTA+AGG - chr3_1:79115048-79115067 None:intergenic 20.0%
!! ACAAAATTGTCCTTAATAAA+TGG - chr3_1:79115101-79115120 None:intergenic 20.0%
!!! TTGTTATTGATAGTAAAAGA+AGG + chr3_1:79115770-79115789 Msa0378350:intron 20.0%
!!! ATATATTTTGAACATGCAAT+GGG - chr3_1:79116280-79116299 None:intergenic 20.0%
!!! TATATATTTTGAACATGCAA+TGG - chr3_1:79116281-79116300 None:intergenic 20.0%
!!! TGAAAGAGATAGTTTTTTAT+AGG - chr3_1:79116318-79116337 None:intergenic 20.0%
!!! TTTCTTTAAAAAAATGCTTG+AGG + chr3_1:79116664-79116683 Msa0378350:intron 20.0%
!! TATGGATAACATATAAATAG+TGG - chr3_1:79116840-79116859 None:intergenic 20.0%
!!! AATTTTAGTAATTACCTGAT+TGG - chr3_1:79116878-79116897 None:intergenic 20.0%
!! ATCAGGTAATTACTAAAATT+AGG + chr3_1:79116878-79116897 Msa0378350:intron 20.0%
!! TTAAAAACACTATAAGTTAC+TGG - chr3_1:79117065-79117084 None:intergenic 20.0%
!!! AGTAACTTATAGTGTTTTTA+AGG + chr3_1:79117064-79117083 Msa0378350:intron 20.0%
!! TTAGAAAGAAATGTATAGAA+AGG - chr3_1:79117343-79117362 None:intergenic 20.0%
!! TACTAGATAAGAAATGATAT+AGG - chr3_1:79117481-79117500 None:intergenic 20.0%
! TAAAGAGGTTTATCATAAAC+AGG - chr3_1:79111729-79111748 None:intergenic 25.0%
!!! GATTTTGATGATTTGATCAA+TGG + chr3_1:79111843-79111862 Msa0378350:CDS 25.0%
!! ATGATTTGATCAATGGATTT+GGG + chr3_1:79111850-79111869 Msa0378350:CDS 25.0%
!! TTTTCAATTCTTACAAGTGT+CGG - chr3_1:79112135-79112154 None:intergenic 25.0%
!! AAAAGCTTTTGGTGAAATAT+TGG + chr3_1:79112280-79112299 Msa0378350:intron 25.0%
!!! CATGTTTTATTATATAGTGC+AGG - chr3_1:79112533-79112552 None:intergenic 25.0%
! TAGTAGATCTTTCAAGAATA+TGG + chr3_1:79112830-79112849 Msa0378350:intron 25.0%
! AGTAGATCTTTCAAGAATAT+GGG + chr3_1:79112831-79112850 Msa0378350:intron 25.0%
! TAGACAACTGAAATAAATCT+TGG + chr3_1:79112999-79113018 Msa0378350:intron 25.0%
!!! TTTTTGAATTGGTTCATCAT+TGG + chr3_1:79113091-79113110 Msa0378350:intron 25.0%
! AATGTTCCTATTTGACTAAA+GGG - chr3_1:79113123-79113142 None:intergenic 25.0%
! AAATGTTCCTATTTGACTAA+AGG - chr3_1:79113124-79113143 None:intergenic 25.0%
!!! AGTGTTTTGTTTATAGCTTA+AGG + chr3_1:79113205-79113224 Msa0378350:intron 25.0%
!!! GTGTTTTGTTTATAGCTTAA+GGG + chr3_1:79113206-79113225 Msa0378350:intron 25.0%
! CTTCTTAAATAAAAATGCAC+AGG - chr3_1:79113270-79113289 None:intergenic 25.0%
!!! GTGCATTTTTATTTAAGAAG+TGG + chr3_1:79113270-79113289 Msa0378350:intron 25.0%
!!! AGTGGATTTATCATTTTATC+TGG + chr3_1:79113288-79113307 Msa0378350:intron 25.0%
! TTATCTGGTAGCTTATAAAA+CGG + chr3_1:79113303-79113322 Msa0378350:intron 25.0%
! CAATAACTTTCTTATTCCAT+AGG - chr3_1:79113330-79113349 None:intergenic 25.0%
! TTTAACAAACATGAAGAGAA+TGG + chr3_1:79113428-79113447 Msa0378350:intron 25.0%
! TTAACAAACATGAAGAGAAT+GGG + chr3_1:79113429-79113448 Msa0378350:intron 25.0%
! GGAATAAGAATAATCGAAAA+GGG + chr3_1:79113450-79113469 Msa0378350:intron 25.0%
! CAACTAATACGTGAAAAATA+AGG - chr3_1:79113487-79113506 None:intergenic 25.0%
! GATAGTTCATCAAATTCTAA+TGG + chr3_1:79113744-79113763 Msa0378350:CDS 25.0%
!! TTCAATTGATTCTTTATCTC+TGG - chr3_1:79113898-79113917 None:intergenic 25.0%
! ACCATCATTAAAATAAGAAG+GGG - chr3_1:79114063-79114082 None:intergenic 25.0%
! TCCAAAATATGAAGAAAAGT+TGG + chr3_1:79114115-79114134 Msa0378350:CDS 25.0%
!!! GATCATTTTCATTTTTTTGC+TGG - chr3_1:79114736-79114755 None:intergenic 25.0%
! TGTAAAGCGACTTATAATTT+GGG - chr3_1:79114987-79115006 None:intergenic 25.0%
! TTGTAAAGCGACTTATAATT+TGG - chr3_1:79114988-79115007 None:intergenic 25.0%
! TTGTCCTTAATAAATGGTAT+GGG - chr3_1:79115095-79115114 None:intergenic 25.0%
! ATTGTCCTTAATAAATGGTA+TGG - chr3_1:79115096-79115115 None:intergenic 25.0%
! TCCAAAACGTCATATAATTT+GGG + chr3_1:79115185-79115204 Msa0378350:intron 25.0%
! GAAAGATCATCAACAATATT+AGG - chr3_1:79115490-79115509 None:intergenic 25.0%
! CTTCAAACCATAAAAGAAAA+GGG - chr3_1:79115612-79115631 None:intergenic 25.0%
! TTTGATATCTTGAAAGTGAA+AGG + chr3_1:79115918-79115937 Msa0378350:intron 25.0%
! AACTGAAAGAAAGAAAGAAA+TGG - chr3_1:79116014-79116033 None:intergenic 25.0%
!! AACCATTACCTTTTTATACT+AGG + chr3_1:79116118-79116137 Msa0378350:intron 25.0%
!!! CTTTTCTTTTTATTTGTGAC+CGG + chr3_1:79116225-79116244 Msa0378350:intron 25.0%
!!! TTTTCTTTTTATTTGTGACC+GGG + chr3_1:79116226-79116245 Msa0378350:intron 25.0%
! AATCATCCAACATAAAGATT+AGG - chr3_1:79116387-79116406 None:intergenic 25.0%
! CTTAGTACATACATATTGTA+AGG - chr3_1:79116593-79116612 None:intergenic 25.0%
! ATATGTATGTACTAAGTACT+TGG + chr3_1:79116597-79116616 Msa0378350:intron 25.0%
! TGGAAAATGCTTATACAATA+TGG - chr3_1:79116858-79116877 None:intergenic 25.0%
!! CTAAAATTAGGTGCATTTTA+AGG + chr3_1:79116890-79116909 Msa0378350:intron 25.0%
!!! AACTTATAGTGTTTTTAAGG+TGG + chr3_1:79117067-79117086 Msa0378350:intron 25.0%
CGAATTCAGTAGCTAATAAA+CGG - chr3_1:79111509-79111528 None:intergenic 30.0%
CGTTTATTAGCTACTGAATT+CGG + chr3_1:79111507-79111526 Msa0378350:CDS 30.0%
! GATGATTTGATCAATGGATT+TGG + chr3_1:79111849-79111868 Msa0378350:CDS 30.0%
TTAATTAAGAAGTTACGCTC+AGG - chr3_1:79111913-79111932 None:intergenic 30.0%
! TATAGCATCGAAATTTCTGA+TGG - chr3_1:79112241-79112260 None:intergenic 30.0%
!! ATGCTATATAGTTCTGATGA+AGG + chr3_1:79112253-79112272 Msa0378350:intron 30.0%
!! TGCTATATAGTTCTGATGAA+GGG + chr3_1:79112254-79112273 Msa0378350:intron 30.0%
! ATGAAGGGTTTAAAAGCTTT+TGG + chr3_1:79112269-79112288 Msa0378350:intron 30.0%
! GTGAAATATTGGTTAGAGAT+TGG + chr3_1:79112291-79112310 Msa0378350:intron 30.0%
TTGTGTTTAAACTTAAGTGG+TGG + chr3_1:79112360-79112379 Msa0378350:intron 30.0%
!! CTTTTAAGAGGCTTTCATAT+AGG + chr3_1:79112456-79112475 Msa0378350:intron 30.0%
GCAGAATATTATCTATTTGC+TGG + chr3_1:79112562-79112581 Msa0378350:intron 30.0%
AACACTAAGATCAATTTCGA+AGG - chr3_1:79112662-79112681 None:intergenic 30.0%
TCGAAATTGATCTTAGTGTT+TGG + chr3_1:79112662-79112681 Msa0378350:intron 30.0%
TTTGCGAAAAACTGTATGTT+TGG + chr3_1:79112786-79112805 Msa0378350:intron 30.0%
AGGATACAAACAAACACATA+TGG - chr3_1:79112880-79112899 None:intergenic 30.0%
! TTGTATCCTATCATTTTGTG+TGG + chr3_1:79112891-79112910 Msa0378350:intron 30.0%
AGATTACCACACAAAATGAT+AGG - chr3_1:79112900-79112919 None:intergenic 30.0%
CAAACATACCATTGTTTGAA+AGG + chr3_1:79112938-79112957 Msa0378350:intron 30.0%
ACAACTGAAATAAATCTTGG+AGG + chr3_1:79113002-79113021 Msa0378350:intron 30.0%
! TTTGAACGGCATTTTTGAAT+TGG + chr3_1:79113080-79113099 Msa0378350:intron 30.0%
CTCATGAAGTTATAATGTGT+AGG - chr3_1:79113187-79113206 None:intergenic 30.0%
TCTGTAATGCTTTGTCTATT+AGG + chr3_1:79113354-79113373 Msa0378350:intron 30.0%
GGGAATAAGAATAATCGAAA+AGG + chr3_1:79113449-79113468 Msa0378350:intron 30.0%
ATACGTGAAAAATAAGGGAT+CGG - chr3_1:79113481-79113500 None:intergenic 30.0%
TTAACTTATCGTTTCATCAC+AGG + chr3_1:79113535-79113554 Msa0378350:intron 30.0%
CAATTGAAAAATTGTCTGTG+AGG + chr3_1:79113910-79113929 Msa0378350:CDS 30.0%
TTAAAATAAGAAGGGGAAGT+AGG - chr3_1:79114056-79114075 None:intergenic 30.0%
!!! TCCCCTTCTTATTTTAATGA+TGG + chr3_1:79114059-79114078 Msa0378350:CDS 30.0%
! GCCAACTTTTCTTCATATTT+TGG - chr3_1:79114119-79114138 None:intergenic 30.0%
AGAGCAAAGAAGAATTGAAA+GGG + chr3_1:79114310-79114329 Msa0378350:CDS 30.0%
AAAGAAGAATTGAAAGGGAA+AGG + chr3_1:79114315-79114334 Msa0378350:CDS 30.0%
! GACTTATAATTTGTGACGTA+GGG - chr3_1:79114944-79114963 None:intergenic 30.0%
! TGACTTATAATTTGTGACGT+AGG - chr3_1:79114945-79114964 None:intergenic 30.0%
CTTTCCCATACCATTTATTA+AGG + chr3_1:79115088-79115107 Msa0378350:intron 30.0%
GTCCAAAACGTCATATAATT+TGG + chr3_1:79115184-79115203 Msa0378350:intron 30.0%
! TCCCAAATTATATGACGTTT+TGG - chr3_1:79115189-79115208 None:intergenic 30.0%
AAACGTCATATAATTTGGGA+CGG + chr3_1:79115189-79115208 Msa0378350:intron 30.0%
! ATGCAAAAAGTATGACTCTA+TGG - chr3_1:79115347-79115366 None:intergenic 30.0%
TTCTGTATCTCTTTACTTTC+AGG + chr3_1:79115378-79115397 Msa0378350:intron 30.0%
TGTGTCTTCAAACATAAAGA+GGG + chr3_1:79115453-79115472 Msa0378350:CDS 30.0%
TCAACAATATTAGGTGATGA+TGG - chr3_1:79115481-79115500 None:intergenic 30.0%
! GATGATCTTTCCTCAATTTT+TGG + chr3_1:79115499-79115518 Msa0378350:CDS 30.0%
GCAATATACTGTTATTGATG+TGG + chr3_1:79115537-79115556 Msa0378350:intron 30.0%
! TTTCCATCCCTTTTCTTTTA+TGG + chr3_1:79115602-79115621 Msa0378350:intron 30.0%
AAACCATAAAAGAAAAGGGA+TGG - chr3_1:79115608-79115627 None:intergenic 30.0%
GCTTCAAACCATAAAAGAAA+AGG - chr3_1:79115613-79115632 None:intergenic 30.0%
! ATTGATTCCTATAGAAGTGT+TGG + chr3_1:79115844-79115863 Msa0378350:intron 30.0%
!! TTGATTCCTATAGAAGTGTT+GGG + chr3_1:79115845-79115864 Msa0378350:intron 30.0%
! AGTGTTGGGATAAAGAATAA+AGG + chr3_1:79115859-79115878 Msa0378350:intron 30.0%
GTGTTGGGATAAAGAATAAA+GGG + chr3_1:79115860-79115879 Msa0378350:intron 30.0%
TGTTGGGATAAAGAATAAAG+GGG + chr3_1:79115861-79115880 Msa0378350:intron 30.0%
! TAACAACTAATGGATAGTGT+AGG - chr3_1:79115969-79115988 None:intergenic 30.0%
AGCATCTTAAAGAAAAGAGT+TGG - chr3_1:79116039-79116058 None:intergenic 30.0%
!!! CTTTTCTTTAAGATGCTAAC+TGG + chr3_1:79116042-79116061 Msa0378350:intron 30.0%
CATAGACAAACAATTTGAAG+AGG - chr3_1:79116090-79116109 None:intergenic 30.0%
TGCCTAGTATAAAAAGGTAA+TGG - chr3_1:79116123-79116142 None:intergenic 30.0%
! TACCTTTTTATACTAGGCAA+AGG + chr3_1:79116124-79116143 Msa0378350:intron 30.0%
CAACATAAAGATTAGGAAGT+TGG - chr3_1:79116380-79116399 None:intergenic 30.0%
CAACTTCCTAATCTTTATGT+TGG + chr3_1:79116378-79116397 Msa0378350:intron 30.0%
ATAAAAACCGTGCAAATTAG+CGG - chr3_1:79116440-79116459 None:intergenic 30.0%
!! TATCTACACATTGATTTCAG+AGG + chr3_1:79116491-79116510 Msa0378350:intron 30.0%
AGTACATACATATTGTAAGG+TGG - chr3_1:79116590-79116609 None:intergenic 30.0%
AGTGGAGGAATTTAAATTAC+TGG - chr3_1:79116822-79116841 None:intergenic 30.0%
GGATAACATATAAATAGTGG+AGG - chr3_1:79116837-79116856 None:intergenic 30.0%
! TGTATAAGCATTTTCCAATC+AGG + chr3_1:79116861-79116880 Msa0378350:intron 30.0%
TCAATTGACTGTGATTGATT+TGG - chr3_1:79116961-79116980 None:intergenic 30.0%
ATCACAGTCAATTGAAATGA+AGG + chr3_1:79116966-79116985 Msa0378350:intron 30.0%
! TTTCGGTGTACATTAAATCA+CGG - chr3_1:79117008-79117027 None:intergenic 30.0%
TGAATGATGATCAGGTATTA+TGG + chr3_1:79117139-79117158 Msa0378350:intron 30.0%
! ATAAGCCTTTTTAACAGTAG+CGG - chr3_1:79117211-79117230 None:intergenic 30.0%
! AATATATTTCTGCTGAAGAG+TGG - chr3_1:79117283-79117302 None:intergenic 30.0%
GCAGAAATATATTGCAGAAA+AGG + chr3_1:79117290-79117309 Msa0378350:CDS 30.0%
! AAAGGTTTTCGATCTACTAA+AGG + chr3_1:79117308-79117327 Msa0378350:CDS 30.0%
GCCAGTTGAAAATAATGATT+AGG + chr3_1:79117391-79117410 Msa0378350:intron 30.0%
! GCCTAATCATTATTTTCAAC+TGG - chr3_1:79117395-79117414 None:intergenic 30.0%
TATTCTCATGTAACTGAGTT+TGG + chr3_1:79117502-79117521 Msa0378350:intron 30.0%
! TTGGATGATGATGATGACAT+TGG - chr3_1:79111558-79111577 None:intergenic 35.0%
ATGTCATCATCATCATCCAA+AGG + chr3_1:79111558-79111577 Msa0378350:CDS 35.0%
!! AGAGGAAGTTTTGGTGAAAT+TGG - chr3_1:79111589-79111608 None:intergenic 35.0%
ATCATGATTGGAAGAGTGAA+AGG - chr3_1:79111637-79111656 None:intergenic 35.0%
GGGATTAGAATTGAAGAGAT+CGG - chr3_1:79111661-79111680 None:intergenic 35.0%
ATTCGGTCATTCGAAGAAAA+CGG + chr3_1:79111797-79111816 Msa0378350:CDS 35.0%
! TTTGCTTGCATTTGAAGCAA+CGG + chr3_1:79112013-79112032 Msa0378350:intron 35.0%
TATCAATAAACCTCAACCTC+AGG - chr3_1:79112078-79112097 None:intergenic 35.0%
TTTCTGATGGAAGACATGTT+TGG - chr3_1:79112228-79112247 None:intergenic 35.0%
!! AAAATGCACTGATTCTCCAA+TGG - chr3_1:79112319-79112338 None:intergenic 35.0%
TGAAAGCCTCTTAAAAGACA+GGG - chr3_1:79112453-79112472 None:intergenic 35.0%
ATGAAAGCCTCTTAAAAGAC+AGG - chr3_1:79112454-79112473 None:intergenic 35.0%
CTTGTGAACTTCCATATTCA+AGG - chr3_1:79112506-79112525 None:intergenic 35.0%
GTTATCCTTGCAGTTAAACA+AGG + chr3_1:79112584-79112603 Msa0378350:intron 35.0%
! GTATTCCTTGTTTAACTGCA+AGG - chr3_1:79112592-79112611 None:intergenic 35.0%
TGCAGTTAAACAAGGAATAC+TGG + chr3_1:79112592-79112611 Msa0378350:intron 35.0%
TAGTGTTTGGATCTCAAAAG+TGG + chr3_1:79112675-79112694 Msa0378350:intron 35.0%
GATCTCAAAAGTGGCTATAA+TGG + chr3_1:79112684-79112703 Msa0378350:intron 35.0%
ATTTGCCGAACATTAAGAGT+TGG + chr3_1:79112708-79112727 Msa0378350:intron 35.0%
CCAAACCAACTCTTAATGTT+CGG - chr3_1:79112716-79112735 None:intergenic 35.0%
!! AACATTAAGAGTTGGTTTGG+AGG + chr3_1:79112716-79112735 Msa0378350:intron 35.0%
!! ACATTAAGAGTTGGTTTGGA+GGG + chr3_1:79112717-79112736 Msa0378350:intron 35.0%
ACCATTGTTTGAAAGGTAAC+AGG + chr3_1:79112945-79112964 Msa0378350:intron 35.0%
AAATCTTGGAGGAGTTTGTA+AGG + chr3_1:79113013-79113032 Msa0378350:intron 35.0%
AATCTTGGAGGAGTTTGTAA+GGG + chr3_1:79113014-79113033 Msa0378350:intron 35.0%
! TTGAATTGGTTCATCATTGG+TGG + chr3_1:79113094-79113113 Msa0378350:intron 35.0%
GTGTAGGTACAAGATTTCAT+TGG - chr3_1:79113171-79113190 None:intergenic 35.0%
! AAGGGTTCTTATTTCAGTAG+TGG + chr3_1:79113224-79113243 Msa0378350:intron 35.0%
!!! TAGTGGATTTTTCTTCTCAG+CGG + chr3_1:79113241-79113260 Msa0378350:intron 35.0%
TAGCTTATAAAACGGACCTA+TGG + chr3_1:79113311-79113330 Msa0378350:intron 35.0%
TTAAACGAAATGCGATGCTT+AGG - chr3_1:79113413-79113432 None:intergenic 35.0%
! TCTGATGATGAACCAATATC+AGG - chr3_1:79113567-79113586 None:intergenic 35.0%
! GATGATACTGATCCTTTTGA+TGG + chr3_1:79113777-79113796 Msa0378350:CDS 35.0%
GAATTTCCAAGTCCATCAAA+AGG - chr3_1:79113792-79113811 None:intergenic 35.0%
TTGTTATGTGTTCGTCTATC+AGG - chr3_1:79113939-79113958 None:intergenic 35.0%
GAATATTTAGGCATGCCATA+TGG - chr3_1:79113999-79114018 None:intergenic 35.0%
GATTCTAATAAACCAGTAGC+TGG + chr3_1:79114023-79114042 Msa0378350:CDS 35.0%
TCATGACGATATATGGCTAA+CGG + chr3_1:79114145-79114164 Msa0378350:CDS 35.0%
! GAAGTTGGTTGTGTAAAAAG+AGG - chr3_1:79114182-79114201 None:intergenic 35.0%
GAGAGCAAAGAAGAATTGAA+AGG + chr3_1:79114309-79114328 Msa0378350:CDS 35.0%
AAGAATTGAAAGGGAAAGGA+AGG + chr3_1:79114319-79114338 Msa0378350:CDS 35.0%
GGAAAGAGAAAATGAAAGAC+AGG + chr3_1:79114373-79114392 Msa0378350:CDS 35.0%
!! TAACTCTTGGCTTTGATGTT+TGG + chr3_1:79114867-79114886 Msa0378350:intron 35.0%
ATGTTTGAAGACACAGTTGT+AGG - chr3_1:79115448-79115467 None:intergenic 35.0%
CTGTGTCTTCAAACATAAAG+AGG + chr3_1:79115452-79115471 Msa0378350:CDS 35.0%
!! GATCTTTCCTCAATTTTTGG+AGG + chr3_1:79115502-79115521 Msa0378350:CDS 35.0%
!! TTTCCTCAATTTTTGGAGGT+AGG + chr3_1:79115506-79115525 Msa0378350:intron 35.0%
AATCCTACCTCCAAAAATTG+AGG - chr3_1:79115512-79115531 None:intergenic 35.0%
!! TTTTTGGAGGTAGGATTTTG+TGG + chr3_1:79115515-79115534 Msa0378350:intron 35.0%
GAGAATTTCAGGAAGTTGAA+GGG + chr3_1:79115647-79115666 Msa0378350:CDS 35.0%
AGAATTTCAGGAAGTTGAAG+GGG + chr3_1:79115648-79115667 Msa0378350:CDS 35.0%
AAGAAGGCAACCAATAGTAA+AGG + chr3_1:79115786-79115805 Msa0378350:intron 35.0%
CTTTATCCCAACACTTCTAT+AGG - chr3_1:79115854-79115873 None:intergenic 35.0%
TGCCTTTGCCTAGTATAAAA+AGG - chr3_1:79116129-79116148 None:intergenic 35.0%
! TTTATACTAGGCAAAGGCAT+TGG + chr3_1:79116130-79116149 Msa0378350:intron 35.0%
GTTGGATGATTGTGATTAGT+TGG + chr3_1:79116396-79116415 Msa0378350:intron 35.0%
AGATTCACGAAGGAACATTT+CGG - chr3_1:79117025-79117044 None:intergenic 35.0%
! CTATAAGTTACTGGAGTGTT+TGG - chr3_1:79117056-79117075 None:intergenic 35.0%
TACCTGATCATCATTCATGA+AGG - chr3_1:79117136-79117155 None:intergenic 35.0%
GGTTTCCACATAAGAATTTG+TGG + chr3_1:79117433-79117452 Msa0378350:intron 35.0%
TTTGGCCACAAATTCTTATG+TGG - chr3_1:79117441-79117460 None:intergenic 35.0%
!!! GTAACTGAGTTTGGTTTTCT+AGG + chr3_1:79117511-79117530 Msa0378350:intron 35.0%
AAATCGTTCATCGTGAGATC+TGG - chr3_1:79111483-79111502 None:intergenic 40.0%
! GAATTCGGTTTGAAACCTCA+AGG + chr3_1:79111522-79111541 Msa0378350:CDS 40.0%
GGTGAAATTGGAAGATCCTT+TGG - chr3_1:79111577-79111596 None:intergenic 40.0%
! GAAGTTGAGAGAGGAAGTTT+TGG - chr3_1:79111598-79111617 None:intergenic 40.0%
ATGTGAATCGAAGTTGAGAG+AGG - chr3_1:79111607-79111626 None:intergenic 40.0%
ATTGGAAGAGTGAAAGGATC+GGG - chr3_1:79111631-79111650 None:intergenic 40.0%
GATTGGAAGAGTGAAAGGAT+CGG - chr3_1:79111632-79111651 None:intergenic 40.0%
GAAGAGATCGGAATCATGAT+TGG - chr3_1:79111649-79111668 None:intergenic 40.0%
! ATCATAAACAGGCGAGTTGA+CGG - chr3_1:79111718-79111737 None:intergenic 40.0%
GAGAAGATCATCAAACGCAA+CGG - chr3_1:79111772-79111791 None:intergenic 40.0%
! GTTGCGTTTGATGATCTTCT+CGG + chr3_1:79111771-79111790 Msa0378350:CDS 40.0%
AAAACGGTGAAGAATGAGAG+AGG + chr3_1:79111813-79111832 Msa0378350:CDS 40.0%
! CATATTTGTTGGTGTCTTGC+CGG + chr3_1:79112176-79112195 Msa0378350:intron 40.0%
! AAGTGGTGGAGACACATAAT+TGG + chr3_1:79112374-79112393 Msa0378350:intron 40.0%
AGACAGGGAATGCATGATAT+CGG - chr3_1:79112438-79112457 None:intergenic 40.0%
! TGCATTCCCTGTCTTTTAAG+AGG + chr3_1:79112444-79112463 Msa0378350:intron 40.0%
TAATCTACTGACGACATTGC+AGG - chr3_1:79112618-79112637 None:intergenic 40.0%
! CCGAACATTAAGAGTTGGTT+TGG + chr3_1:79112713-79112732 Msa0378350:intron 40.0%
GCCTGTTACCTTTCAAACAA+TGG - chr3_1:79112949-79112968 None:intergenic 40.0%
ATCTTGGAGGAGTTTGTAAG+GGG + chr3_1:79113015-79113034 Msa0378350:intron 40.0%
TGGACTCCCTTTAGTCAAAT+AGG + chr3_1:79113114-79113133 Msa0378350:intron 40.0%
GATGAACCAATATCAGGAGT+GGG - chr3_1:79113561-79113580 None:intergenic 40.0%
TGATGAACCAATATCAGGAG+TGG - chr3_1:79113562-79113581 None:intergenic 40.0%
AAAAGGGTCTTCTGTTGCAT+TGG - chr3_1:79113619-79113638 None:intergenic 40.0%
! CTTCTAATGGGTCTGAAAAG+TGG - chr3_1:79113686-79113705 None:intergenic 40.0%
!!! ACTGATCCTTTTGATGGACT+TGG + chr3_1:79113783-79113802 Msa0378350:CDS 40.0%
! TACCAGCATTTTCATCAGAG+AGG + chr3_1:79113814-79113833 Msa0378350:CDS 40.0%
GATTCCTGTTGAACATGATC+AGG + chr3_1:79113959-79113978 Msa0378350:CDS 40.0%
AACTCCTGATCATGTTCAAC+AGG - chr3_1:79113966-79113985 None:intergenic 40.0%
!! GTTTTAGACCCGTCAATTCT+CGG + chr3_1:79114081-79114100 Msa0378350:CDS 40.0%
! TTTTAGACCCGTCAATTCTC+GGG + chr3_1:79114082-79114101 Msa0378350:CDS 40.0%
CCATATATCGTCATGATCTG+AGG - chr3_1:79114141-79114160 None:intergenic 40.0%
CCTCAGATCATGACGATATA+TGG + chr3_1:79114138-79114157 Msa0378350:CDS 40.0%
!! TCTGACTTGGGAATATGTAC+TGG - chr3_1:79114239-79114258 None:intergenic 40.0%
AGTACATATTCCCAAGTCAG+AGG + chr3_1:79114238-79114257 Msa0378350:CDS 40.0%
AGAACAACAGAGACTTGAGA+GGG + chr3_1:79114352-79114371 Msa0378350:CDS 40.0%
AGAAAATGAAAGACAGGCTG+TGG + chr3_1:79114379-79114398 Msa0378350:CDS 40.0%
ATACTAAAGCGGCTAACTCT+TGG + chr3_1:79114854-79114873 Msa0378350:intron 40.0%
! GTCATATAATTTGGGACGGA+GGG + chr3_1:79115193-79115212 Msa0378350:intron 40.0%
AAGACACAGTTGTAGGTTTC+TGG - chr3_1:79115441-79115460 None:intergenic 40.0%
GGAGAATTTCAGGAAGTTGA+AGG + chr3_1:79115646-79115665 Msa0378350:CDS 40.0%
TTGAAGGGGAAAGTGAAGAA+AGG + chr3_1:79115662-79115681 Msa0378350:CDS 40.0%
AGGCAACCAATAGTAAAGGA+AGG + chr3_1:79115790-79115809 Msa0378350:intron 40.0%
TGGTTGCCTTCCTTTACTAT+TGG - chr3_1:79115799-79115818 None:intergenic 40.0%
GAATAAAGGGGAGTTAGAGA+AGG + chr3_1:79115873-79115892 Msa0378350:intron 40.0%
! CATTGGCTGAGAAGAATCAA+CGG + chr3_1:79116147-79116166 Msa0378350:CDS 40.0%
ATTGGCTGAGAAGAATCAAC+GGG + chr3_1:79116148-79116167 Msa0378350:CDS 40.0%
!! TCTTTTTATTTGTGACCGGG+TGG + chr3_1:79116229-79116248 Msa0378350:intron 40.0%
CTGACACAGATGCATGTATT+GGG - chr3_1:79116349-79116368 None:intergenic 40.0%
!! ACATTGATTTCAGAGGCTTG+CGG + chr3_1:79116498-79116517 Msa0378350:intron 40.0%
AAGTACTTGGTATAATGCCC+AGG + chr3_1:79116610-79116629 Msa0378350:intron 40.0%
AGTACTTGGTATAATGCCCA+GGG + chr3_1:79116611-79116630 Msa0378350:intron 40.0%
AGCAATGAGGTGATTAGATG+AGG - chr3_1:79116718-79116737 None:intergenic 40.0%
TACAACATTGTCCACTGAGT+AGG - chr3_1:79116741-79116760 None:intergenic 40.0%
TACTACAGTGCTCTGTAAAG+AGG - chr3_1:79116925-79116944 None:intergenic 40.0%
CTCCTTCATGAATGATGATC+AGG + chr3_1:79117131-79117150 Msa0378350:intron 40.0%
TATTATGGCCTGAATGTGGT+TGG + chr3_1:79117154-79117173 Msa0378350:CDS 40.0%
TACAGCCGCTACTGTTAAAA+AGG + chr3_1:79117203-79117222 Msa0378350:CDS 40.0%
AACCCACATGTAGATAACAG+TGG - chr3_1:79117417-79117436 None:intergenic 40.0%
GTGCATTACATGCACACATT+TGG - chr3_1:79117459-79117478 None:intergenic 40.0%
CAGTTAGAGGAAGAGAAGGA+GGG - chr3_1:79111419-79111438 None:intergenic 45.0%
TCAGCAGTTAGAGGAAGAGA+AGG - chr3_1:79111423-79111442 None:intergenic 45.0%
TCATCGTGAGATCTGGTGAA+CGG - chr3_1:79111476-79111495 None:intergenic 45.0%
ATTGGTGCAGATTTGCCTTG+AGG - chr3_1:79111540-79111559 None:intergenic 45.0%
! GTGAAGAATGAGAGAGGTGT+CGG + chr3_1:79111819-79111838 Msa0378350:CDS 45.0%
TCAGTAACCACACCTTTGAC+GGG - chr3_1:79111889-79111908 None:intergenic 45.0%
CTCAGTAACCACACCTTTGA+CGG - chr3_1:79111890-79111909 None:intergenic 45.0%
GGTAGCGTATGATCTAGTGA+AGG + chr3_1:79112034-79112053 Msa0378350:intron 45.0%
ATGTAGTGAGACTGAACCTG+AGG + chr3_1:79112059-79112078 Msa0378350:intron 45.0%
! TGGTTAGAGATTGGCTCCAT+TGG + chr3_1:79112300-79112319 Msa0378350:intron 45.0%
! GGAGTTTGTAAGGGGTACAT+AGG + chr3_1:79113023-79113042 Msa0378350:intron 45.0%
TGAGGATGAATCAGTTGGAG+CGG - chr3_1:79113661-79113680 None:intergenic 45.0%
GTCCTCTCTGATGAAAATGC+TGG - chr3_1:79113819-79113838 None:intergenic 45.0%
! TCAGAGAGGACTAGCAGATA+TGG + chr3_1:79113828-79113847 Msa0378350:CDS 45.0%
TTGTGTTTGACCACGGTGTT+GGG - chr3_1:79113863-79113882 None:intergenic 45.0%
CCTGAACTTGTGTTTGACCA+CGG - chr3_1:79113870-79113889 None:intergenic 45.0%
GGTCAAACACAAGTTCAGGT+TGG + chr3_1:79113871-79113890 Msa0378350:CDS 45.0%
GAGTTTCATCAAGCGCCATA+TGG + chr3_1:79113981-79114000 Msa0378350:CDS 45.0%
AAGAAGGGGAAGTAGGCATT+TGG - chr3_1:79114049-79114068 None:intergenic 45.0%
ATATCTGCCCGAGAATTGAC+GGG - chr3_1:79114092-79114111 None:intergenic 45.0%
CATATCTGCCCGAGAATTGA+CGG - chr3_1:79114093-79114112 None:intergenic 45.0%
! TTGGGAATATGTACTGGTCG+AGG - chr3_1:79114233-79114252 None:intergenic 45.0%
AAACCATGAGCAGCAGCAAA+AGG + chr3_1:79114274-79114293 Msa0378350:CDS 45.0%
GAGAACAACAGAGACTTGAG+AGG + chr3_1:79114351-79114370 Msa0378350:CDS 45.0%
TGCTGCTGAGGCAAAGAAAA+GGG + chr3_1:79114553-79114572 Msa0378350:CDS 45.0%
GGCAAAGAAAAGGGCTGAAA+AGG + chr3_1:79114562-79114581 Msa0378350:CDS 45.0%
TTGAATCGTTCTTCAGCGTG+AGG + chr3_1:79114756-79114775 Msa0378350:CDS 45.0%
TGAATCGTTCTTCAGCGTGA+GGG + chr3_1:79114757-79114776 Msa0378350:CDS 45.0%
ACAGAAGAGTTAGACCTAGG+AGG - chr3_1:79114806-79114825 None:intergenic 45.0%
CTCACAGAAGAGTTAGACCT+AGG - chr3_1:79114809-79114828 None:intergenic 45.0%
! CGTCATATAATTTGGGACGG+AGG + chr3_1:79115192-79115211 Msa0378350:intron 45.0%
TGATGCACAATTTCAGCCAG+AGG + chr3_1:79115411-79115430 Msa0378350:CDS 45.0%
!! GTAGGTTTCTGGTTTACCTC+TGG - chr3_1:79115430-79115449 None:intergenic 45.0%
TCCTGAAATTCTCCAGCTGA+GGG - chr3_1:79115640-79115659 None:intergenic 45.0%
TTCCTGAAATTCTCCAGCTG+AGG - chr3_1:79115641-79115660 None:intergenic 45.0%
AGAAAGGCGAAAAGCCAGAT+TGG + chr3_1:79115678-79115697 Msa0378350:CDS 45.0%
AGGAGAGAGTCTCTTCTCTA+AGG - chr3_1:79115949-79115968 None:intergenic 45.0%
TCTGCTCTCTTTGAGTCTGT+AGG - chr3_1:79116175-79116194 None:intergenic 45.0%
CCTGACACAGATGCATGTAT+TGG - chr3_1:79116350-79116369 None:intergenic 45.0%
CCAATACATGCATCTGTGTC+AGG + chr3_1:79116347-79116366 Msa0378350:intron 45.0%
GTGCAAATTAGCGGAGAACT+CGG - chr3_1:79116431-79116450 None:intergenic 45.0%
! GAGTTCTCCGCTAATTTGCA+CGG + chr3_1:79116430-79116449 Msa0378350:intron 45.0%
!! TGGACTTTGAAGTTAAGCGC+TGG + chr3_1:79116527-79116546 Msa0378350:CDS 45.0%
!! GGACTTTGAAGTTAAGCGCT+GGG + chr3_1:79116528-79116547 Msa0378350:CDS 45.0%
TCATTCGCTCTGCTCATTAC+AGG + chr3_1:79116791-79116810 Msa0378350:intron 45.0%
CAGGTATTATGGCCTGAATG+TGG + chr3_1:79117150-79117169 Msa0378350:intron 45.0%
TCCTGATAAAGTGCAGCAGA+AGG + chr3_1:79117254-79117273 Msa0378350:CDS 45.0%
CCTGATAAAGTGCAGCAGAA+GGG + chr3_1:79117255-79117274 Msa0378350:CDS 45.0%
AGGCCACTGTTATCTACATG+TGG + chr3_1:79117411-79117430 Msa0378350:intron 45.0%
GGCCACTGTTATCTACATGT+GGG + chr3_1:79117412-79117431 Msa0378350:intron 45.0%
GCAGTTAGAGGAAGAGAAGG+AGG - chr3_1:79111420-79111439 None:intergenic 50.0%
TTTCTTCCGTCTACGGTGGT+CGG - chr3_1:79111450-79111469 None:intergenic 50.0%
ACGGTGGTTTCTTCCGTCTA+CGG - chr3_1:79111457-79111476 None:intergenic 50.0%
CCTCTTTACGACGACGATGA+CGG + chr3_1:79111741-79111760 Msa0378350:CDS 50.0%
! GCGTTTGATGATCTTCTCGG+CGG + chr3_1:79111774-79111793 Msa0378350:CDS 50.0%
! GATGATCTTCTCGGCGGATT+CGG + chr3_1:79111780-79111799 Msa0378350:CDS 50.0%
ATAGCAAGTCCTCCCGTCAA+AGG + chr3_1:79111874-79111893 Msa0378350:CDS 50.0%
TGAGACTGAACCTGAGGTTG+AGG + chr3_1:79112065-79112084 Msa0378350:intron 50.0%
CACGTGTCAGTGTCAAACAC+CGG - chr3_1:79112198-79112217 None:intergenic 50.0%
CAGGGAATGCATGATATCGG+TGG - chr3_1:79112435-79112454 None:intergenic 50.0%
!! GAGTTGGTTTGGAGGGAAAG+AGG + chr3_1:79112724-79112743 Msa0378350:intron 50.0%
AGGGTCTTCTGTTGCATTGG+AGG - chr3_1:79113616-79113635 None:intergenic 50.0%
! GCTCCAACTGATTCATCCTC+AGG + chr3_1:79113660-79113679 Msa0378350:CDS 50.0%
TGGCCTGAGGATGAATCAGT+TGG - chr3_1:79113666-79113685 None:intergenic 50.0%
! TGTGTTTGACCACGGTGTTG+GGG - chr3_1:79113862-79113881 None:intergenic 50.0%
CTTGTGTTTGACCACGGTGT+TGG - chr3_1:79113864-79113883 None:intergenic 50.0%
CCGTGGTCAAACACAAGTTC+AGG + chr3_1:79113867-79113886 Msa0378350:CDS 50.0%
! ATATGTACTGGTCGAGGAGG+AGG - chr3_1:79114227-79114246 None:intergenic 50.0%
! GGAATATGTACTGGTCGAGG+AGG - chr3_1:79114230-79114249 None:intergenic 50.0%
CTGCTTCTCTCCTCTGACTT+GGG - chr3_1:79114251-79114270 None:intergenic 50.0%
ACTGCTTCTCTCCTCTGACT+TGG - chr3_1:79114252-79114271 None:intergenic 50.0%
! TCTCCTTTTGCTGCTGCTCA+TGG - chr3_1:79114280-79114299 None:intergenic 50.0%
TGAGCAGCAGCAAAAGGAGA+TGG + chr3_1:79114280-79114299 Msa0378350:CDS 50.0%
AAGCTAGAGTGCGTGCTGAA+AGG + chr3_1:79114489-79114508 Msa0378350:CDS 50.0%
AGCTAGAGTGCGTGCTGAAA+GGG + chr3_1:79114490-79114509 Msa0378350:CDS 50.0%
ACAAGCTGAAGCCCGTGAAA+GGG + chr3_1:79114529-79114548 Msa0378350:CDS 50.0%
CTGCTGCTGAGGCAAAGAAA+AGG + chr3_1:79114552-79114571 Msa0378350:CDS 50.0%
! TAAAGCAGAACGTGCTGCTG+TGG + chr3_1:79114658-79114677 Msa0378350:CDS 50.0%
! AGAACGTGCTGCTGTGGAAA+GGG + chr3_1:79114664-79114683 Msa0378350:CDS 50.0%
GAATCGTTCTTCAGCGTGAG+GGG + chr3_1:79114758-79114777 Msa0378350:CDS 50.0%
! TTTGAAGCATCTCCCTCAGC+TGG + chr3_1:79115625-79115644 Msa0378350:intron 50.0%
TCCCTCAGCTGGAGAATTTC+AGG + chr3_1:79115636-79115655 Msa0378350:CDS 50.0%
CAGATTGGAACGCCTTCAGA+GGG + chr3_1:79115693-79115712 Msa0378350:CDS 50.0%
CTGTATGAGCAGAAACCACC+CGG - chr3_1:79116247-79116266 None:intergenic 50.0%
AGCATAAGGCAGCAAACCCT+GGG - chr3_1:79116630-79116649 None:intergenic 50.0%
TAGCATAAGGCAGCAAACCC+TGG - chr3_1:79116631-79116650 None:intergenic 50.0%
ACCTCATTGCTCCTACTCAG+TGG + chr3_1:79116727-79116746 Msa0378350:intron 50.0%
TCCACTGAGTAGGAGCAATG+AGG - chr3_1:79116731-79116750 None:intergenic 50.0%
GGCTGCTTCAAGATTCACGA+AGG - chr3_1:79117035-79117054 None:intergenic 50.0%
CCCTTCTGCTGCACTTTATC+AGG - chr3_1:79117258-79117277 None:intergenic 50.0%
GTCGGTGGATCAGCAGTTAG+AGG - chr3_1:79111432-79111451 None:intergenic 55.0%
GTGGTTTCTTCCGTCTACGG+TGG - chr3_1:79111454-79111473 None:intergenic 55.0%
TCGTGAGATCTGGTGAACGG+TGG - chr3_1:79111473-79111492 None:intergenic 55.0%
GACGGACATGGAAGCGAAAC+CGG - chr3_1:79111700-79111719 None:intergenic 55.0%
! AACAGGCGAGTTGACGGACA+TGG - chr3_1:79111712-79111731 None:intergenic 55.0%
CCGTCATCGTCGTCGTAAAG+AGG - chr3_1:79111744-79111763 None:intergenic 55.0%
AAGTCCTCCCGTCAAAGGTG+TGG + chr3_1:79111879-79111898 Msa0378350:intron 55.0%
GTAACCACACCTTTGACGGG+AGG - chr3_1:79111886-79111905 None:intergenic 55.0%
!! CAAGTGTCGGCGTGTGAGTA+TGG - chr3_1:79112122-79112141 None:intergenic 55.0%
CACAGGCCCACTCCTGATAT+TGG + chr3_1:79113552-79113571 Msa0378350:intron 55.0%
TGGGTCTGAAAAGTGGCCTG+AGG - chr3_1:79113679-79113698 None:intergenic 55.0%
! TGACCACGGTGTTGGGGAAT+CGG - chr3_1:79113856-79113875 None:intergenic 55.0%
GTAGGCATTTGGCCAGCTAC+TGG - chr3_1:79114038-79114057 None:intergenic 55.0%
!! GAAGGTGGTGGAGCAGAAGT+TGG - chr3_1:79114197-79114216 None:intergenic 55.0%
GCAGCAGCAAAAGGAGATGG+AGG + chr3_1:79114283-79114302 Msa0378350:CDS 55.0%
AGCTCGCCAAAGAGCTGAGA+AGG + chr3_1:79114442-79114461 Msa0378350:CDS 55.0%
CAGCAGCCTTCTCAGCTCTT+TGG - chr3_1:79114451-79114470 None:intergenic 55.0%
TGAAAGGGCCGCTGTTCAGA+GGG + chr3_1:79114505-79114524 Msa0378350:CDS 55.0%
AGCTTGTGCCCTCTGAACAG+CGG - chr3_1:79114516-79114535 None:intergenic 55.0%
CACAAGCTGAAGCCCGTGAA+AGG + chr3_1:79114528-79114547 Msa0378350:CDS 55.0%
AAAGGCTGCTGCAGGGGAAA+AGG + chr3_1:79114580-79114599 Msa0378350:CDS 55.0%
GAGAAAGAGCTGCAGCTGCA+AGG + chr3_1:79114615-79114634 Msa0378350:CDS 55.0%
! CAGAACGTGCTGCTGTGGAA+AGG + chr3_1:79114663-79114682 Msa0378350:CDS 55.0%
AGCAGCTGCAGCTCTTTCTC+GGG - chr3_1:79114702-79114721 None:intergenic 55.0%
CAGCAGCTGCAGCTCTTTCT+CGG - chr3_1:79114703-79114722 None:intergenic 55.0%
GAGTTAGACCTAGGAGGCCT+TGG - chr3_1:79114800-79114819 None:intergenic 55.0%
!! CCTCTGAAGGCGTTCCAATC+TGG - chr3_1:79115695-79115714 None:intergenic 55.0%
CCAGATTGGAACGCCTTCAG+AGG + chr3_1:79115692-79115711 Msa0378350:CDS 55.0%
TCAGAGGCTTGCGGAAACAC+TGG + chr3_1:79116507-79116526 Msa0378350:intron 55.0%
!! AAGTTAAGCGCTGGGCTGCA+GGG + chr3_1:79116536-79116555 Msa0378350:CDS 55.0%
ATGGCCTGAATGTGGTTGGC+AGG + chr3_1:79117158-79117177 Msa0378350:CDS 55.0%
ACTGCCTGCCAACCACATTC+AGG - chr3_1:79117165-79117184 None:intergenic 55.0%
GATCCACCGACCACCGTAGA+CGG + chr3_1:79111441-79111460 Msa0378350:five_prime_UTR 60.0%
!! CCGGAGGTGCTACGAGAGAT+GGG - chr3_1:79111681-79111700 None:intergenic 60.0%
CCCATCTCTCGTAGCACCTC+CGG + chr3_1:79111678-79111697 Msa0378350:CDS 60.0%
!! ACCGGAGGTGCTACGAGAGA+TGG - chr3_1:79111682-79111701 None:intergenic 60.0%
GGACATGGAAGCGAAACCGG+AGG - chr3_1:79111697-79111716 None:intergenic 60.0%
! GGAGGTGGTCTTGAAGGTGG+TGG - chr3_1:79114209-79114228 None:intergenic 60.0%
! GGAGGAGGTGGTCTTGAAGG+TGG - chr3_1:79114212-79114231 None:intergenic 60.0%
! CGAGGAGGAGGTGGTCTTGA+AGG - chr3_1:79114215-79114234 None:intergenic 60.0%
! TGTACTGGTCGAGGAGGAGG+TGG - chr3_1:79114224-79114243 None:intergenic 60.0%
CTGAAAGGGCCGCTGTTCAG+AGG + chr3_1:79114504-79114523 Msa0378350:CDS 60.0%
CTCAGCAGCAGCCCTTTCAC+GGG - chr3_1:79114543-79114562 None:intergenic 60.0%
CCTCAGCAGCAGCCCTTTCA+CGG - chr3_1:79114544-79114563 None:intergenic 60.0%
AGGGCTGAAAAGGCTGCTGC+AGG + chr3_1:79114572-79114591 Msa0378350:CDS 60.0%
GGGCTGAAAAGGCTGCTGCA+GGG + chr3_1:79114573-79114592 Msa0378350:CDS 60.0%
GGCTGAAAAGGCTGCTGCAG+GGG + chr3_1:79114574-79114593 Msa0378350:CDS 60.0%
TGTGGAAAGGGCTGCTGCAG+AGG + chr3_1:79114676-79114695 Msa0378350:CDS 60.0%
CGTTCTTCAGCGTGAGGGGA+CGG + chr3_1:79114762-79114781 Msa0378350:CDS 60.0%
GTTCTTCAGCGTGAGGGGAC+GGG + chr3_1:79114763-79114782 Msa0378350:CDS 60.0%
! AGGAGGCCTTGGAGCGCTAT+TGG - chr3_1:79114789-79114808 None:intergenic 60.0%
ATAGCGCTCCAAGGCCTCCT+AGG + chr3_1:79114789-79114808 Msa0378350:CDS 60.0%
!! GAAGTTAAGCGCTGGGCTGC+AGG + chr3_1:79116535-79116554 Msa0378350:CDS 60.0%
CTTCCGTCTACGGTGGTCGG+TGG - chr3_1:79111447-79111466 None:intergenic 65.0%
!! GCACCGATTCCCCAACACCG+TGG + chr3_1:79113850-79113869 Msa0378350:CDS 65.0%
CCGTGAAAGGGCTGCTGCTG+AGG + chr3_1:79114541-79114560 Msa0378350:CDS 65.0%
GACGGGCCAATAGCGCTCCA+AGG + chr3_1:79114780-79114799 Msa0378350:CDS 65.0%
GGAACGCCTTCAGAGGGCTC+AGG + chr3_1:79115699-79115718 Msa0378350:CDS 65.0%
CGCTGGGCTGCAGGGAAAGA+GGG + chr3_1:79116544-79116563 Msa0378350:CDS 65.0%
GCTGGGCTGCAGGGAAAGAG+GGG + chr3_1:79116545-79116564 Msa0378350:CDS 65.0%
CGCGCTCCTGAGCCCTCTGA+AGG - chr3_1:79115708-79115727 None:intergenic 70.0%
! TCAGAGGGCTCAGGAGCGCG+CGG + chr3_1:79115708-79115727 Msa0378350:CDS 70.0%
GCGCTGGGCTGCAGGGAAAG+AGG + chr3_1:79116543-79116562 Msa0378350:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79111315 79117556 79111315 ID=Msa0378350;Name=Msa0378350
chr3_1 mRNA 79111315 79117556 79111315 ID=Msa0378350-mRNA-1;Parent=Msa0378350;Name=Msa0378350-mRNA-1;_AED=0.17;_eAED=0.17;_QI=177|0.85|0.87|0.87|1|1|8|0|749
chr3_1 exon 79111315 79111895 79111315 ID=Msa0378350-mRNA-1:exon:19304;Parent=Msa0378350-mRNA-1
chr3_1 exon 79113557 79114823 79113557 ID=Msa0378350-mRNA-1:exon:19305;Parent=Msa0378350-mRNA-1
chr3_1 exon 79115400 79115523 79115400 ID=Msa0378350-mRNA-1:exon:19306;Parent=Msa0378350-mRNA-1
chr3_1 exon 79115632 79115729 79115632 ID=Msa0378350-mRNA-1:exon:19307;Parent=Msa0378350-mRNA-1
chr3_1 exon 79116140 79116205 79116140 ID=Msa0378350-mRNA-1:exon:19308;Parent=Msa0378350-mRNA-1
chr3_1 exon 79116511 79116600 79116511 ID=Msa0378350-mRNA-1:exon:19309;Parent=Msa0378350-mRNA-1
chr3_1 exon 79117153 79117329 79117153 ID=Msa0378350-mRNA-1:exon:19310;Parent=Msa0378350-mRNA-1
chr3_1 exon 79117533 79117556 79117533 ID=Msa0378350-mRNA-1:exon:19311;Parent=Msa0378350-mRNA-1
chr3_1 five_prime_UTR 79111315 79111491 79111315 ID=Msa0378350-mRNA-1:five_prime_utr;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79111492 79111895 79111492 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79113557 79114823 79113557 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79115400 79115523 79115400 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79115632 79115729 79115632 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79116140 79116205 79116140 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79116511 79116600 79116511 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79117153 79117329 79117153 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
chr3_1 CDS 79117533 79117556 79117533 ID=Msa0378350-mRNA-1:cds;Parent=Msa0378350-mRNA-1
Gene Sequence

>Msa0378350

ATGAACGATTTCGACCGTTTATTAGCTACTGAATTCGGTTTGAAACCTCAAGGCAAATCTGCACCAATGTCATCATCATCATCCAAAGGATCTTCCAATTTCACCAAAACTTCCTCTCTCAACTTCGATTCACATTCCCGATCCTTTCACTCTTCCAATCATGATTCCGATCTCTTCAATTCTAATCCCATCTCTCGTAGCACCTCCGGTTTCGCTTCCATGTCCGTCAACTCGCCTGTTTATGATAAACCTCTTTACGACGACGATGACGGAAGTGCCGTTGCGTTTGATGATCTTCTCGGCGGATTCGGTCATTCGAAGAAAACGGTGAAGAATGAGAGAGGTGTCGGTGATTTTGATGATTTGATCAATGGATTTGGGAATAGCAAGTCCTCCCGTCAAAGGCCCACTCCTGATATTGGTTCATCATCAGAATCTACTTTCAGTGCATCTAAAACAACCTCCAATGCAACAGAAGACCCTTTTAAAATATTTGAATCAGCTTCCGCTCCAACTGATTCATCCTCAGGCCACTTTTCAGACCCATTAGAAGAGATTAGTAAATTTACTAGTTCTAAAAGCACAAAAAATGATAGTTCATCAAATTCTAATGGTGCAGTATATGATGATACTGATCCTTTTGATGGACTTGGAAATTCAGTACCAGCATTTTCATCAGAGAGGACTAGCAGATATGGCACCGATTCCCCAACACCGTGGTCAAACACAAGTTCAGGTTGGACCAGAGATAAAGAATCAATTGAAAAATTGTCTGTGAGGAGTCCTGATAGACGAACACATAACAAGATTCCTGTTGAACATGATCAGGAGTTTCATCAAGCGCCATATGGCATGCCTAAATATTCATCTGATTCTAATAAACCAGTAGCTGGCCAAATGCCTACTTCCCCTTCTTATTTTAATGATGGTTTTAGACCCGTCAATTCTCGGGCAGATATGTCTCCAAAATATGAAGAAAAGTTGGCCTCAGATCATGACGATATATGGCTAACGGTATCAGAGATTCCTCTTTTTACACAACCAACTTCTGCTCCACCACCTTCAAGACCACCTCCTCCTCGACCAGTACATATTCCCAAGTCAGAGGAGAGAAGCAGTTCAAACCATGAGCAGCAGCAAAAGGAGATGGAGGATAGAGAGCAAAGAAGAATTGAAAGGGAAAGGAAGGAGAAAGAAAGAGAACAACAGAGACTTGAGAGGGAAAGAGAAAATGAAAGACAGGCTGTGGAAAGAGCTACTAGAGAAGCACGTGAAAGAGCAGCTGCTGAAGCTCGCCAAAGAGCTGAGAAGGCTGCTGTTGAGAAAGCTAATGCAGAAGCTAGAGTGCGTGCTGAAAGGGCCGCTGTTCAGAGGGCACAAGCTGAAGCCCGTGAAAGGGCTGCTGCTGAGGCAAAGAAAAGGGCTGAAAAGGCTGCTGCAGGGGAAAAGGTGAGAGAAGCACGAGAAAGAGCTGCAGCTGCAAGGACTGAAGCTGAAGCACGAGTTAAAGCAGAACGTGCTGCTGTGGAAAGGGCTGCTGCAGAGGCCCGAGAAAGAGCTGCAGCTGCTGCAAGAATGTACCAGCAAAAAAATGAAAATGATCTTGAATCGTTCTTCAGCGTGAGGGGACGGGCCAATAGCGCTCCAAGGCCTCCTAGGTCTAACTCTTCTGATTCAGTTTTTGATGCACAATTTCAGCCAGAGGTAAACCAGAAACCTACAACTGTGTCTTCAAACATAAAGAGGGCACCATCATCACCTAATATTGTTGATGATCTTTCCTCAATTTTTGGAGCATCTCCCTCAGCTGGAGAATTTCAGGAAGTTGAAGGGGAAAGTGAAGAAAGGCGAAAAGCCAGATTGGAACGCCTTCAGAGGGCTCAGGAGCGCGCGGCAAAGGCATTGGCTGAGAAGAATCAACGGGACCTACAGACTCAAAGAGAGCAGAATGAGAGACATAGGCTTGCGGAAACACTGGACTTTGAAGTTAAGCGCTGGGCTGCAGGGAAAGAGGGGAACTTGCGTGCTCTACTCTCCACCTTACAATATGTATTATGGCCTGAATGTGGTTGGCAGGCAGTTTCTTTGACTGATCTTATTACAGCCGCTACTGTTAAAAAGGCTTATAGAAAAGCTACACTGTGCATTCATCCTGATAAAGTGCAGCAGAAGGGTGCCACTCTTCAGCAGAAATATATTGCAGAAAAGGTTTTCGATCTACTAAAGGACGTTCTGCCTCTGCAGATTTAG
Protein sequence

>Msa0378350

MNDFDRLLATEFGLKPQGKSAPMSSSSSKGSSNFTKTSSLNFDSHSRSFHSSNHDSDLFNSNPISRSTSGFASMSVNSPVYDKPLYDDDDGSAVAFDDLLGGFGHSKKTVKNERGVGDFDDLINGFGNSKSSRQRPTPDIGSSSESTFSASKTTSNATEDPFKIFESASAPTDSSSGHFSDPLEEISKFTSSKSTKNDSSSNSNGAVYDDTDPFDGLGNSVPAFSSERTSRYGTDSPTPWSNTSSGWTRDKESIEKLSVRSPDRRTHNKIPVEHDQEFHQAPYGMPKYSSDSNKPVAGQMPTSPSYFNDGFRPVNSRADMSPKYEEKLASDHDDIWLTVSEIPLFTQPTSAPPPSRPPPPRPVHIPKSEERSSSNHEQQQKEMEDREQRRIERERKEKEREQQRLERERENERQAVERATREARERAAAEARQRAEKAAVEKANAEARVRAERAAVQRAQAEARERAAAEAKKRAEKAAAGEKVREARERAAAARTEAEARVKAERAAVERAAAEARERAAAAARMYQQKNENDLESFFSVRGRANSAPRPPRSNSSDSVFDAQFQPEVNQKPTTVSSNIKRAPSSPNIVDDLSSIFGASPSAGEFQEVEGESEERRKARLERLQRAQERAAKALAEKNQRDLQTQREQNERHRLAETLDFEVKRWAAGKEGNLRALLSTLQYVLWPECGWQAVSLTDLITAATVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLKDVLPLQI*