AlfalfaGEDB | MS.gene000715

M. sativa cultivar XinJiangDaYe / MS.gene000715

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12854.10 PF13041.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000715.t1	XP_013456512.1	93.4	604	39	1	2	604	3	606	0.00E+00	1162.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000715.t1	Q9SX45	45.4	575	303	3	25	591	19	590	4.5e-141	503.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000715.t1	A0A072UNB7	93.4	604	39	1	2	604	3	606	0.0e+00	1162.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene000715	MS.gene029278	PPI
MS.gene000715	MS.gene60129	PPI
MS.gene000715	MS.gene92581	PPI
MS.gene000715	MS.gene037662	PPI
MS.gene000715	MS.gene96975	PPI
MS.gene000715	MS.gene001450	PPI
MS.gene000715	MS.gene66497	PPI
MS.gene000715	MS.gene018680	PPI
MS.gene000715	MS.gene73251	PPI
MS.gene000715	MS.gene036061	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000715.t1	MTR_4g074150	93.377	604	39	1	2	604	3	606	0.0	1172
MS.gene000715.t1	MTR_4g113830	35.149	606	344	9	18	580	39	638	4.14e-115	360
MS.gene000715.t1	MTR_4g024860	34.727	622	357	8	7	587	57	670	1.89e-114	365
MS.gene000715.t1	MTR_2g036960	38.767	503	296	5	71	564	79	578	2.75e-114	357
MS.gene000715.t1	MTR_7g093900	35.091	607	351	7	20	588	57	658	4.46e-114	355
MS.gene000715.t1	MTR_2g094430	35.417	576	344	5	17	585	29	583	9.57e-114	355
MS.gene000715.t1	MTR_6g093170	35.245	593	337	10	6	556	1	588	2.15e-112	349
MS.gene000715.t1	MTR_3g052720	40.169	473	253	2	144	586	246	718	3.03e-111	359
MS.gene000715.t1	MTR_3g052720	25.403	496	285	11	18	474	55	504	7.52e-34	138
MS.gene000715.t1	MTR_3g052720	30.357	280	181	5	123	392	357	632	5.52e-32	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000715.t1	AT1G50270	46.528	576	297	3	24	591	18	590	0.0	533
MS.gene000715.t1	AT2G22410	35.000	620	358	7	6	585	52	666	4.69e-119	369
MS.gene000715.t1	AT4G38010	36.330	545	328	10	18	552	17	552	6.70e-117	359
MS.gene000715.t1	AT2G29760	34.818	606	351	8	19	585	42	642	2.07e-114	358
MS.gene000715.t1	AT3G15930	33.887	602	345	8	22	580	49	640	2.31e-114	357
MS.gene000715.t1	AT1G08070	34.138	621	355	10	5	580	30	641	9.62e-113	354
MS.gene000715.t1	AT3G12770	34.536	582	367	7	11	585	25	599	5.47e-112	350
MS.gene000715.t1	AT1G08070	35.568	537	304	5	80	580	7	537	1.07e-110	345
MS.gene000715.t1	AT5G04780	35.639	477	304	2	109	585	67	540	2.52e-106	334
MS.gene000715.t1	AT3G08820	34.446	569	365	3	24	587	27	592	2.83e-106	335

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Find 0 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAAACTAAGTGCATCT+TGG	+	32366:78334-78353	MS.gene000715:intergenic	30.0%
CTAGTCAGTGTAAAATCATT+CGG	+	32366:78383-78402	MS.gene000715:intergenic	30.0%
GAATTTGATTCCATTGTTTC+AGG	+	32366:77524-77543	MS.gene000715:intergenic	30.0%
GTAGATATGTATGCAAAATG+CGG	-	32366:78512-78531	MS.gene000715:CDS	30.0%
AAAGACATTCAATGCTCCTA+AGG	+	32366:78636-78655	MS.gene000715:intergenic	35.0%
ACTTCTATCCAACTATAACC+CGG	+	32366:79103-79122	MS.gene000715:intergenic	35.0%
ATAAAAGGGCCATGATCATT+CGG	+	32366:77822-77841	MS.gene000715:intergenic	35.0%
GTATTCAACGTGTCAAAACT+GGG	-	32366:79024-79043	MS.gene000715:CDS	35.0%
GTTTGATGAAAGTCCTGAAA+GGG	-	32366:77950-77969	MS.gene000715:CDS	35.0%
TATGCTAAAATGCGTGAACT+GGG	-	32366:77735-77754	MS.gene000715:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
32366	gene	77465	79279	77465	ID=MS.gene000715
32366	mRNA	77465	79279	77465	ID=MS.gene000715.t1;Parent=MS.gene000715
32366	exon	77465	79279	77465	ID=MS.gene000715.t1.exon1;Parent=MS.gene000715.t1
32366	CDS	77465	79279	77465	ID=cds.MS.gene000715.t1;Parent=MS.gene000715.t1

Gene Sequence

>MS.gene000715

ATGGTTTTAGTTTCTCTGCGCAATGCAATTGCATCCTTTTCAAAGAACCGCCAAAACCTGAAACAATGGAATCAAATTCAATCCATCATAGTCACTTCCGGTATCTACTCATTCCAAGACGCCATTTTCGTCACCAAACTCATCCATTGCGCACCACTCTCTCAACCTCAAACTTCATCTCTTCACCTTCTTCTCAACACAATCCACACTCCCAACACTCGTCTCTTCAACAAACTCATCGCATCTTTCCCTAAAACAACACTTCTTTCTTATGCTAAAATGCGTGAACTGGGTGTTCAACCAGATAAACACACCTTCCCTTTGCTTTTAAAGATTTTTTCAAAGAATGGTGTACCGAATGATCATGGCCCTTTTATGGTTTATGCTCAAATTTTTAAACTTGGGTTTGATTTTGATTGTTTTGTTTGTAATGGTTTGATTTCGGCTTTTGGGTGTTCGGGGTTTATGAAAAGTGCGTGTAAAGTGTTTGATGAAAGTCCTGAAAGGGATATTGTTGCTTGGACTGCTTTGATTAGTGGGTTTGTTAAAAATGGCGCTCCTGGTGAGGCGCTTAGGTGTTTTGTGGAGATGAGGTTGAAAGGTGTTGAAATTGATGGTTTCACTGTTGCTAGTGTTTTACGTGCTGCTGCCGTGGTGGGTGATGATTGTTTTGGAAAGTGTGTTCATGGGTTTTATGTGGAAACTGGGAGAGTGGTTTTGGATGGTTCTGTTTATTGTGCTCTTGTGGATATGTACTTCAAGTGTGGTTATTATGAAGATGCGTGCAAAGTGTTTGATGAAATGCCTTACAGAGATGTGGTTGCTTGGACTGTGGTTGTGGCTGGTTTTGTGCAATGTAAAAAGTACCAAGATGCACTTAGTTTTTTCTGGAGAATGCTGTTAGATAATGTTGTGCCGAATGATTTTACACTGACTAGTGTTCTTAGTGCTTGTGCTCACGCGGGGGCATTGGATCAAGGAAGGTTGGTGCATCGATACATAGAGTGTAATGATTGTAATTTGAACGCAGTGCTAGGGACGTCATTGGTAGATATGTATGCAAAATGCGGTTGCGTTGATGAAGCTTTAATGGTATTTGAAAACTTGCAAGTCAAGAATGTGCACACTTGGACGGCAATGATTAACGGGTTGGCTGTGCATGGGGATGCCTTAGGAGCATTGAATGTCTTTTCACGCATGTTGGAAAGTGGTCTTCGACCTAATGACGTTACCTTCCTTGGTGTTCTTGGTGCATGTTCTCATGGAGGTTTTGTAGATGAGGGGAAAAGGTTATTTGAAATGATGAGACATACTTATCATTTGAAGCCAAACATGGAGCATTATGGATGCATGGTTGATATTCTTGGTCGAGCAGGATATTTGGAAGATGCAAAACAAATTATTGATAATATGCCAATGAAGCCTAGCCCTGGTGTCTTGGGAGCTTTATTAGGTGCCTGCGTGAGCCACGAAGATTTCGTAATGGGCGAACATATAGGGAACATTCTGGTTAATCTACAGCAGAACCACAACACTGGATATGCACTCCTGGCAAACTTGTATTCAACGTGTCAAAACTGGGAAGCAGTAGCGCGTGTCCGGAAGCTCATGAAAGGAACGCAGGTTGAAAAGACTCCGGGTTATAGTTGGATAGAAGTGGCCGGCTCAATTCACGAGTTTAAAGCATTTGATCATTCACATAGCGAATTTTCATGTGTTTATTTGATGTTGGAGAATTTAATATTGCAAATGAAAATGGTCGATCAAGCTCAATGGAACGAAAACGACCTTGTATCCAGCACCGATGTGGGTTAA

Protein sequence

>MS.gene000715.t1

MVLVSLRNAIASFSKNRQNLKQWNQIQSIIVTSGIYSFQDAIFVTKLIHCAPLSQPQTSSLHLLLNTIHTPNTRLFNKLIASFPKTTLLSYAKMRELGVQPDKHTFPLLLKIFSKNGVPNDHGPFMVYAQIFKLGFDFDCFVCNGLISAFGCSGFMKSACKVFDESPERDIVAWTALISGFVKNGAPGEALRCFVEMRLKGVEIDGFTVASVLRAAAVVGDDCFGKCVHGFYVETGRVVLDGSVYCALVDMYFKCGYYEDACKVFDEMPYRDVVAWTVVVAGFVQCKKYQDALSFFWRMLLDNVVPNDFTLTSVLSACAHAGALDQGRLVHRYIECNDCNLNAVLGTSLVDMYAKCGCVDEALMVFENLQVKNVHTWTAMINGLAVHGDALGALNVFSRMLESGLRPNDVTFLGVLGACSHGGFVDEGKRLFEMMRHTYHLKPNMEHYGCMVDILGRAGYLEDAKQIIDNMPMKPSPGVLGALLGACVSHEDFVMGEHIGNILVNLQQNHNTGYALLANLYSTCQNWEAVARVRKLMKGTQVEKTPGYSWIEVAGSIHEFKAFDHSHSEFSCVYLMLENLILQMKMVDQAQWNENDLVSSTDVG