Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002248.t1 | XP_024631819.1 | 98.3 | 824 | 13 | 1 | 1 | 823 | 1 | 824 | 0.00E+00 | 1553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002248.t1 | Q8S944 | 71.4 | 760 | 199 | 5 | 18 | 770 | 32 | 780 | 5.6e-304 | 1044.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002248.t1 | G7IS66 | 98.3 | 824 | 13 | 1 | 1 | 823 | 1 | 824 | 0.0e+00 | 1553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02205 | MS.gene002248 | PPI |
MS.gene049382 | MS.gene002248 | PPI |
MS.gene01221 | MS.gene002248 | PPI |
MS.gene39347 | MS.gene002248 | PPI |
MS.gene002248 | MS.gene047680 | PPI |
MS.gene041137 | MS.gene002248 | PPI |
MS.gene028493 | MS.gene002248 | PPI |
MS.gene050237 | MS.gene002248 | PPI |
MS.gene056130 | MS.gene002248 | PPI |
MS.gene053588 | MS.gene002248 | PPI |
MS.gene013407 | MS.gene002248 | PPI |
MS.gene90230 | MS.gene002248 | PPI |
MS.gene71381 | MS.gene002248 | PPI |
MS.gene26060 | MS.gene002248 | PPI |
MS.gene022695 | MS.gene002248 | PPI |
MS.gene059331 | MS.gene002248 | PPI |
MS.gene059333 | MS.gene002248 | PPI |
MS.gene39665 | MS.gene002248 | PPI |
MS.gene002248 | MS.gene068015 | PPI |
MS.gene010407 | MS.gene002248 | PPI |
MS.gene010879 | MS.gene002248 | PPI |
MS.gene013409 | MS.gene002248 | PPI |
MS.gene059335 | MS.gene002248 | PPI |
MS.gene068015 | MS.gene002248 | PPI |
MS.gene06506 | MS.gene002248 | PPI |
MS.gene06504 | MS.gene002248 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002248.t1 | MTR_2g009690 | 99.393 | 824 | 4 | 1 | 1 | 823 | 1 | 824 | 0.0 | 1676 |
MS.gene002248.t1 | MTR_4g093750 | 82.133 | 750 | 123 | 4 | 18 | 763 | 10 | 752 | 0.0 | 1217 |
MS.gene002248.t1 | MTR_4g093750 | 82.036 | 668 | 109 | 3 | 18 | 683 | 10 | 668 | 0.0 | 1077 |
MS.gene002248.t1 | MTR_5g009150 | 38.833 | 497 | 284 | 4 | 23 | 507 | 4 | 492 | 4.41e-107 | 342 |
MS.gene002248.t1 | MTR_8g099550 | 39.394 | 495 | 279 | 6 | 23 | 505 | 4 | 489 | 2.69e-105 | 337 |
MS.gene002248.t1 | MTR_4g098920 | 40.404 | 495 | 274 | 5 | 23 | 505 | 4 | 489 | 4.03e-103 | 331 |
MS.gene002248.t1 | MTR_8g027675 | 38.057 | 494 | 286 | 6 | 23 | 505 | 4 | 488 | 7.30e-100 | 323 |
MS.gene002248.t1 | MTR_8g105580 | 38.337 | 493 | 284 | 6 | 21 | 503 | 5 | 487 | 1.84e-97 | 315 |
MS.gene002248.t1 | MTR_8g105580 | 38.337 | 493 | 284 | 6 | 21 | 503 | 5 | 487 | 4.87e-97 | 315 |
MS.gene002248.t1 | MTR_8g009510 | 38.105 | 496 | 283 | 5 | 23 | 503 | 7 | 493 | 4.85e-95 | 311 |
MS.gene002248.t1 | MTR_1g032550 | 36.566 | 495 | 295 | 5 | 21 | 505 | 5 | 490 | 1.97e-93 | 306 |
MS.gene002248.t1 | MTR_7g451010 | 38.431 | 497 | 284 | 7 | 23 | 505 | 7 | 495 | 6.79e-93 | 304 |
MS.gene002248.t1 | MTR_8g009510 | 34.518 | 394 | 245 | 4 | 114 | 503 | 2 | 386 | 3.49e-60 | 213 |
MS.gene002248.t1 | MTR_8g087750 | 37.801 | 291 | 169 | 6 | 39 | 327 | 65 | 345 | 9.01e-42 | 163 |
MS.gene002248.t1 | MTR_8g087770 | 31.674 | 442 | 281 | 12 | 1 | 433 | 22 | 451 | 3.12e-41 | 161 |
MS.gene002248.t1 | MTR_4g030140 | 22.727 | 484 | 322 | 15 | 48 | 507 | 42 | 497 | 6.80e-17 | 85.9 |
MS.gene002248.t1 | MTR_8g463270 | 29.187 | 209 | 129 | 4 | 28 | 225 | 31 | 231 | 3.06e-13 | 73.9 |
MS.gene002248.t1 | MTR_4g094300 | 27.363 | 201 | 122 | 5 | 40 | 225 | 35 | 226 | 8.50e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002248.t1 | AT4G33650 | 72.568 | 740 | 193 | 4 | 18 | 750 | 32 | 768 | 0.0 | 1108 |
MS.gene002248.t1 | AT4G33650 | 72.470 | 741 | 193 | 5 | 18 | 750 | 32 | 769 | 0.0 | 1103 |
MS.gene002248.t1 | AT2G14120 | 71.278 | 759 | 201 | 7 | 2 | 751 | 3 | 753 | 0.0 | 1090 |
MS.gene002248.t1 | AT2G14120 | 71.146 | 759 | 202 | 7 | 2 | 751 | 3 | 753 | 0.0 | 1087 |
MS.gene002248.t1 | AT2G14120 | 68.655 | 788 | 201 | 8 | 2 | 751 | 3 | 782 | 0.0 | 1073 |
MS.gene002248.t1 | AT2G14120 | 71.719 | 739 | 192 | 7 | 2 | 731 | 3 | 733 | 0.0 | 1064 |
MS.gene002248.t1 | AT5G42080 | 38.586 | 495 | 283 | 6 | 23 | 505 | 4 | 489 | 4.03e-102 | 328 |
MS.gene002248.t1 | AT5G42080 | 38.586 | 495 | 283 | 6 | 23 | 505 | 4 | 489 | 4.03e-102 | 328 |
MS.gene002248.t1 | AT5G42080 | 38.945 | 493 | 278 | 7 | 23 | 505 | 4 | 483 | 5.22e-100 | 323 |
MS.gene002248.t1 | AT5G42080 | 41.589 | 428 | 231 | 5 | 23 | 440 | 4 | 422 | 1.17e-99 | 316 |
MS.gene002248.t1 | AT3G60190 | 39.113 | 496 | 280 | 7 | 23 | 504 | 7 | 494 | 9.37e-99 | 320 |
MS.gene002248.t1 | AT3G61760 | 37.778 | 495 | 287 | 7 | 23 | 505 | 4 | 489 | 4.44e-98 | 317 |
MS.gene002248.t1 | AT3G61760 | 37.778 | 495 | 287 | 7 | 23 | 505 | 4 | 489 | 7.13e-98 | 317 |
MS.gene002248.t1 | AT1G14830 | 37.931 | 493 | 287 | 5 | 23 | 505 | 7 | 490 | 1.60e-97 | 317 |
MS.gene002248.t1 | AT3G61760 | 39.083 | 458 | 260 | 6 | 23 | 470 | 4 | 452 | 2.00e-96 | 309 |
MS.gene002248.t1 | AT2G44590 | 37.980 | 495 | 287 | 6 | 23 | 505 | 4 | 490 | 1.02e-95 | 312 |
MS.gene002248.t1 | AT2G44590 | 35.758 | 495 | 281 | 7 | 23 | 505 | 4 | 473 | 8.79e-83 | 277 |
MS.gene002248.t1 | AT2G44590 | 35.758 | 495 | 281 | 7 | 23 | 505 | 4 | 473 | 1.02e-82 | 276 |
MS.gene002248.t1 | AT1G60500 | 33.264 | 484 | 292 | 15 | 40 | 511 | 60 | 524 | 5.57e-49 | 184 |
MS.gene002248.t1 | AT1G60530 | 42.248 | 258 | 129 | 8 | 40 | 291 | 57 | 300 | 1.24e-42 | 157 |
MS.gene002248.t1 | AT1G59610 | 23.045 | 486 | 316 | 15 | 48 | 507 | 41 | 494 | 1.79e-17 | 87.8 |
MS.gene002248.t1 | AT1G10290 | 23.663 | 486 | 313 | 15 | 48 | 507 | 41 | 494 | 2.38e-17 | 87.4 |
MS.gene002248.t1 | AT1G53140 | 28.761 | 226 | 135 | 6 | 28 | 236 | 47 | 263 | 2.65e-12 | 71.2 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACTTCCACCAATAAAATT+TGG | 0.138529 | 2.3:+73301815 | None:intergenic |
AGCTTATCAGCAAGCATTTA+AGG | 0.139781 | 2.3:-73298928 | MS.gene002248:intron |
AAGGCAAATATCTCGTTTAT+TGG | 0.227476 | 2.3:-73304088 | MS.gene002248:CDS |
AATAGTTCTGGAGATTATTA+TGG | 0.257284 | 2.3:-73297603 | MS.gene002248:CDS |
TTAGGCAGACCAGTTGTTTC+AGG | 0.258936 | 2.3:+73297663 | None:intergenic |
CAAAGCAATTATGCACTTCT+TGG | 0.269456 | 2.3:-73300834 | MS.gene002248:intron |
GGGCTGCCTTATCACTTTCT+AGG | 0.299459 | 2.3:-73301754 | MS.gene002248:CDS |
GATTGTTTCACCAAATGTTC+TGG | 0.301922 | 2.3:-73307876 | MS.gene002248:CDS |
GAATCTGCATTAGCATAAAA+TGG | 0.303651 | 2.3:+73297522 | None:intergenic |
CTCTTGTTCTTCAGCTTGTT+CGG | 0.304424 | 2.3:-73310646 | MS.gene002248:CDS |
TGCAACAGACCAAATCTTCT+AGG | 0.308020 | 2.3:-73301775 | MS.gene002248:CDS |
TACTTCCACCAATAAAATTT+GGG | 0.332642 | 2.3:+73301816 | None:intergenic |
CATCTTTGTCAGGAGTTTAG+AGG | 0.336837 | 2.3:-73305890 | MS.gene002248:intron |
TGCTATGTAGTTGGATATCA+TGG | 0.344789 | 2.3:-73307447 | MS.gene002248:intron |
CAAGAAGTGCATAATTGCTT+TGG | 0.346835 | 2.3:+73300835 | None:intergenic |
TAATCCTCAACAGGCTGGTC+AGG | 0.350796 | 2.3:-73306196 | MS.gene002248:intron |
TGATATTCGTAGGGAAATTC+AGG | 0.351477 | 2.3:-73310555 | MS.gene002248:intron |
TATATATGATGAATTAATAA+AGG | 0.351813 | 2.3:-73304040 | MS.gene002248:intron |
ACGGGAGCGGAGGAAGGAGG+AGG | 0.352223 | 2.3:+73310863 | None:intergenic |
CACACCAGCAAATTCAGATT+TGG | 0.358582 | 2.3:-73307723 | MS.gene002248:CDS |
AAGAAGTGCATAATTGCTTT+GGG | 0.363841 | 2.3:+73300836 | None:intergenic |
AAACGTATGGATGAAGTTAT+AGG | 0.365773 | 2.3:-73303883 | MS.gene002248:CDS |
AGATGCCCGTAATCTGTTAC+AGG | 0.377150 | 2.3:-73307414 | MS.gene002248:CDS |
CTCCCGCAGGTCGCGGTTGT+CGG | 0.379878 | 2.3:-73310758 | MS.gene002248:CDS |
TTCTATAGGCTGAAACTGAT+AGG | 0.383306 | 2.3:-73307946 | MS.gene002248:intron |
TCAAATGAACCGGAGTATAA+AGG | 0.383772 | 2.3:-73307122 | MS.gene002248:CDS |
GGCGAGTTTCTTCATTTGCC+TGG | 0.385663 | 2.3:-73310599 | MS.gene002248:CDS |
GACGGAAGCTGTCGAAATTA+CGG | 0.390439 | 2.3:-73300921 | MS.gene002248:CDS |
AATCATATTACGACATTGTC+AGG | 0.390895 | 2.3:-73300880 | MS.gene002248:CDS |
CGCGACCTGCGGGAGGTTGA+TGG | 0.393446 | 2.3:+73310766 | None:intergenic |
TAAGGCAGCCCTAGAAGATT+TGG | 0.395563 | 2.3:+73301766 | None:intergenic |
ATGTATTCAACAAATAGTTC+TGG | 0.398221 | 2.3:-73297615 | MS.gene002248:CDS |
GCTCCCGTTCCTCTCGGTTC+CGG | 0.405173 | 2.3:-73310848 | MS.gene002248:CDS |
AATGCAGATTCCAATGGAAA+TGG | 0.408726 | 2.3:-73297510 | MS.gene002248:CDS |
CTATCAGATGGCCTCAAGAT+AGG | 0.411240 | 2.3:+73300953 | None:intergenic |
TGCAGAGGTTTCCTTTCTTA+CGG | 0.413410 | 2.3:-73303906 | MS.gene002248:CDS |
ATCCAAGTCTTCAGTGTGCC+AGG | 0.414456 | 2.3:-73304065 | MS.gene002248:CDS |
GGATGCTCTGGAATCTGAAA+AGG | 0.416095 | 2.3:-73301621 | MS.gene002248:CDS |
TGATCTCAAATAGGATGCTC+TGG | 0.418143 | 2.3:-73301633 | MS.gene002248:intron |
AAACATTGGTGGATCAAGTT+GGG | 0.418361 | 2.3:-73301191 | MS.gene002248:CDS |
TCCACTTCCACGCTATGAAA+TGG | 0.419295 | 2.3:+73301097 | None:intergenic |
GGAGCGGAGGAAGGAGGAGG+AGG | 0.419591 | 2.3:+73310866 | None:intergenic |
CTAAGCACCCTAAGTCAAAA+AGG | 0.420942 | 2.3:-73297572 | MS.gene002248:CDS |
CCCCTCCGACTTGGCTATGT+TGG | 0.422014 | 2.3:-73307380 | MS.gene002248:CDS |
CATATCAAAGCTGTGCTACC+TGG | 0.422681 | 2.3:-73306458 | MS.gene002248:CDS |
GATTGCACATATCATGGAAA+TGG | 0.423913 | 2.3:-73303821 | MS.gene002248:CDS |
CTTGCAACATCTCTTCAAAC+AGG | 0.424005 | 2.3:+73299000 | None:intergenic |
ATGTCTACATCTGAGTTATC+TGG | 0.424116 | 2.3:-73305943 | MS.gene002248:CDS |
ACATGATCATTGTTCTGATC+CGG | 0.426873 | 2.3:+73307783 | None:intergenic |
ACACCGGAACCGAGAGGAAC+GGG | 0.428775 | 2.3:+73310845 | None:intergenic |
AGATATAAACCTCTGTCAAA+TGG | 0.431498 | 2.3:+73301056 | None:intergenic |
AGTGTCATGTCCAGAACATT+TGG | 0.433023 | 2.3:+73307866 | None:intergenic |
CGCTAGACTTGCCGCTACTC+TGG | 0.434137 | 2.3:+73310732 | None:intergenic |
TCCATACGTTTCCGTAAGAA+AGG | 0.436067 | 2.3:+73303895 | None:intergenic |
GCTTGTTCGGAGTTCTGAAC+CGG | 0.439537 | 2.3:-73310633 | MS.gene002248:CDS |
AACTCCTGACAAAGATGGAT+TGG | 0.441503 | 2.3:+73305896 | None:intergenic |
GAACATGATTGCACATATCA+TGG | 0.443449 | 2.3:-73303827 | MS.gene002248:CDS |
GGTACAAACAATGCTGATCT+TGG | 0.445110 | 2.3:+73304284 | None:intergenic |
TTCTTCATTTGCCTGGGAAG+AGG | 0.447824 | 2.3:-73310592 | MS.gene002248:CDS |
AGAGGAACGGGAGCGGAGGA+AGG | 0.450345 | 2.3:+73310857 | None:intergenic |
GGAACGGGAGCGGAGGAAGG+AGG | 0.453366 | 2.3:+73310860 | None:intergenic |
TTCCGACAACCGCGACCTGC+GGG | 0.453475 | 2.3:+73310756 | None:intergenic |
TCGTTCGTTGTAGGACTTGG+AGG | 0.453878 | 2.3:-73297730 | MS.gene002248:intron |
TCCTCCGCTCCCGTTCCTCT+CGG | 0.457040 | 2.3:-73310854 | MS.gene002248:CDS |
ACAGGAACCTTCGTAATGCC+TGG | 0.457345 | 2.3:+73307833 | None:intergenic |
TCATGTTCTCTGATGGTTCA+AGG | 0.460358 | 2.3:+73303842 | None:intergenic |
TAATGGAGTAGTTGTTGATC+CGG | 0.460812 | 2.3:-73301546 | MS.gene002248:intron |
GGCGGATTGGCTTCCGACGC+GGG | 0.463838 | 2.3:+73310787 | None:intergenic |
TCTGAACCGGCTGATGAATA+CGG | 0.466788 | 2.3:-73310620 | MS.gene002248:CDS |
TTAGCCAAATCTGAATTTGC+TGG | 0.472104 | 2.3:+73307719 | None:intergenic |
CTGAAAGAACTGTGAAGTCT+CGG | 0.472735 | 2.3:-73301589 | MS.gene002248:CDS |
ATTCTTGCAAGACAGGCTAA+TGG | 0.473025 | 2.3:-73301563 | MS.gene002248:CDS |
GCTCCTTTGCGACAGTAACT+AGG | 0.475671 | 2.3:+73306411 | None:intergenic |
ACTAGGATATTCAAATGAAC+CGG | 0.478834 | 2.3:-73307132 | MS.gene002248:intron |
ACTGCCATACAAAATGCAAC+TGG | 0.478863 | 2.3:-73304308 | MS.gene002248:CDS |
GGACTTGGAGGAGCTGCCTA+TGG | 0.483592 | 2.3:-73297718 | MS.gene002248:CDS |
TCAGAAGGCTGGTCACCAAC+AGG | 0.483697 | 2.3:+73307815 | None:intergenic |
GAAACATTGGTGGATCAAGT+TGG | 0.483721 | 2.3:-73301192 | MS.gene002248:CDS |
GCGGGAGGTTGATGGCGGAT+TGG | 0.486263 | 2.3:+73310774 | None:intergenic |
TCCTTTCTTACGGAAACGTA+TGG | 0.489381 | 2.3:-73303896 | MS.gene002248:CDS |
CTCTAAACTCCTGACAAAGA+TGG | 0.490780 | 2.3:+73305891 | None:intergenic |
TCGGGCTATTCTTGCAAGAC+AGG | 0.491847 | 2.3:-73301570 | MS.gene002248:CDS |
GACATTGTGTAGCTCTCTCT+TGG | 0.492670 | 2.3:+73299152 | None:intergenic |
AATGGAAAACAATCTGCATC+AGG | 0.494536 | 2.3:-73297492 | MS.gene002248:CDS |
ACCATTTCATAGCGTGGAAG+TGG | 0.500046 | 2.3:-73301098 | MS.gene002248:CDS |
CATGATCATTGTTCTGATCC+GGG | 0.501371 | 2.3:+73307784 | None:intergenic |
CATCAACCTCCCGCAGGTCG+CGG | 0.501903 | 2.3:-73310765 | MS.gene002248:CDS |
TACAGTTTACCTGAAACAAC+TGG | 0.502618 | 2.3:-73297672 | MS.gene002248:CDS |
ACGATTTCTCTGATATTCGT+AGG | 0.506779 | 2.3:-73310565 | MS.gene002248:CDS |
ACAGATGAGCCATCGCTGTA+TGG | 0.509428 | 2.3:-73303938 | MS.gene002248:intron |
GCTGAAACTGATAGGGAAGC+AGG | 0.509875 | 2.3:-73307938 | MS.gene002248:CDS |
CTTCCGACAACCGCGACCTG+CGG | 0.515750 | 2.3:+73310755 | None:intergenic |
TTCATTCTTTCCGTCAACCA+TGG | 0.516173 | 2.3:+73305969 | None:intergenic |
TAATTCAGATGCTCTTCAAA+TGG | 0.518595 | 2.3:-73307699 | MS.gene002248:CDS |
TCGAGTGTTTCCGCTTCCAT+AGG | 0.519463 | 2.3:+73297702 | None:intergenic |
TGGTGTTGTAAACCGTAGTC+AGG | 0.521243 | 2.3:-73307360 | MS.gene002248:CDS |
GCATTCTCCTCCATGGTTGA+CGG | 0.522374 | 2.3:-73305979 | MS.gene002248:CDS |
AACCTGGCACACTGAAGACT+TGG | 0.523075 | 2.3:+73304063 | None:intergenic |
CTTCGCACGAGGACTTCAAA+TGG | 0.525711 | 2.3:+73304108 | None:intergenic |
CGATTTCTCTGATATTCGTA+GGG | 0.525990 | 2.3:-73310564 | MS.gene002248:CDS |
CTTATATGTGCTCTCAGCCC+AGG | 0.527246 | 2.3:+73306440 | None:intergenic |
TCAGATGCTCTTCAAATGGC+AGG | 0.529642 | 2.3:-73307695 | MS.gene002248:CDS |
GCAAAGGAGCATGCAAGCTA+TGG | 0.529760 | 2.3:-73306398 | MS.gene002248:CDS |
AAAGTTATTCCCCTCCGACT+TGG | 0.530469 | 2.3:-73307389 | MS.gene002248:CDS |
GATGCTCTGGAATCTGAAAA+GGG | 0.531781 | 2.3:-73301620 | MS.gene002248:CDS |
AACTCGCCGTATTCATCAGC+CGG | 0.532434 | 2.3:+73310614 | None:intergenic |
TGTAGCCACCTCCTATCTTG+AGG | 0.534646 | 2.3:-73300964 | MS.gene002248:intron |
CTTTGGCCTAGAAAGTGATA+AGG | 0.536894 | 2.3:+73301748 | None:intergenic |
TTCCACCAATAAAATTTGGG+TGG | 0.538529 | 2.3:+73301819 | None:intergenic |
AGTACAGATTTCATTCCCAC+GGG | 0.540505 | 2.3:+73310676 | None:intergenic |
ACCGAGAGGAACGGGAGCGG+AGG | 0.540970 | 2.3:+73310853 | None:intergenic |
GGAACCGAGAGGAACGGGAG+CGG | 0.541907 | 2.3:+73310850 | None:intergenic |
ACAACAAGGGTGTCTCAGAC+AGG | 0.542340 | 2.3:-73307913 | MS.gene002248:CDS |
GCGAGTTTCTTCATTTGCCT+GGG | 0.544868 | 2.3:-73310598 | MS.gene002248:CDS |
ATATCAAAGCTGTGCTACCT+GGG | 0.545418 | 2.3:-73306457 | MS.gene002248:CDS |
ACTGGTCTGCCTAAAATTCA+CGG | 0.546442 | 2.3:-73297654 | MS.gene002248:CDS |
CTTATCACTTTCTAGGCCAA+AGG | 0.546959 | 2.3:-73301747 | MS.gene002248:intron |
GAGATATTTGCCTTCGCACG+AGG | 0.547806 | 2.3:+73304097 | None:intergenic |
TGAAAGAACTGTGAAGTCTC+GGG | 0.548653 | 2.3:-73301588 | MS.gene002248:CDS |
TATGCTAATGCAGATTCCAA+TGG | 0.548763 | 2.3:-73297516 | MS.gene002248:CDS |
GGAGGAGCTGCCTATGGAAG+CGG | 0.548950 | 2.3:-73297712 | MS.gene002248:CDS |
TCTATAGGCTGAAACTGATA+GGG | 0.549501 | 2.3:-73307945 | MS.gene002248:intron |
TCTACATCTGAGTTATCTGG+TGG | 0.552993 | 2.3:-73305940 | MS.gene002248:CDS |
AGCGTCCTCGAAGCTCTCGT+TGG | 0.563496 | 2.3:-73310713 | MS.gene002248:CDS |
TCCACCAATAAAATTTGGGT+GGG | 0.563887 | 2.3:+73301820 | None:intergenic |
GCAACAGACCAAATCTTCTA+GGG | 0.564025 | 2.3:-73301774 | MS.gene002248:CDS |
TAATTCATCATATATAAACC+TGG | 0.571444 | 2.3:+73304047 | None:intergenic |
GGGCTTCAATATCAGAAGGC+TGG | 0.573426 | 2.3:+73307804 | None:intergenic |
TGGAGAAATCACCGAGTCCA+AGG | 0.574229 | 2.3:-73306378 | MS.gene002248:intron |
GACACCGGAACCGAGAGGAA+CGG | 0.575526 | 2.3:+73310844 | None:intergenic |
GAAAACAGCATTCTCCTCCA+TGG | 0.575748 | 2.3:-73305986 | MS.gene002248:intron |
TACATCTGAGTTATCTGGTG+GGG | 0.576139 | 2.3:-73305938 | MS.gene002248:CDS |
GTCTCTGAATTACTATCAGA+TGG | 0.576504 | 2.3:+73300941 | None:intergenic |
TGTGACAGCTAGAATAAGAC+AGG | 0.578553 | 2.3:+73307742 | None:intergenic |
CTACATCTGAGTTATCTGGT+GGG | 0.581243 | 2.3:-73305939 | MS.gene002248:CDS |
CACGGCCAACGAGAGCTTCG+AGG | 0.583984 | 2.3:+73310708 | None:intergenic |
ATATCATTACCTCCTGACTA+CGG | 0.584325 | 2.3:+73307348 | None:intergenic |
TGCTGAACCATTTCATAGCG+TGG | 0.585685 | 2.3:-73301104 | MS.gene002248:CDS |
CAGGAACCTTCGTAATGCCT+GGG | 0.585825 | 2.3:+73307834 | None:intergenic |
ATAGCTTATGTCTCAAGCGT+GGG | 0.586484 | 2.3:+73297462 | None:intergenic |
TGGCGGATTGGCTTCCGACG+CGG | 0.586924 | 2.3:+73310786 | None:intergenic |
AAATCGTAGAACCTCTTCCC+AGG | 0.587277 | 2.3:+73310581 | None:intergenic |
AGGAGGAGGAGGTGATGTAA+CGG | 0.588272 | 2.3:+73310877 | None:intergenic |
AGCCTTCTGATATTGAAGCC+CGG | 0.588939 | 2.3:-73307802 | MS.gene002248:CDS |
GATGCAGGTAATAGAACGAT+CGG | 0.589052 | 2.3:-73307577 | MS.gene002248:intron |
ATCCGCCATCAACCTCCCGC+AGG | 0.592467 | 2.3:-73310771 | MS.gene002248:CDS |
GAAGCGGAAACACTCGAAAG+AGG | 0.593878 | 2.3:-73297696 | MS.gene002248:CDS |
TCATCAGTCAAGCCTTCACA+TGG | 0.595835 | 2.3:+73304341 | None:intergenic |
GATGGCCTCAAGATAGGAGG+TGG | 0.597546 | 2.3:+73300959 | None:intergenic |
ATCTGATAGTAATTCAGAGA+CGG | 0.597593 | 2.3:-73300939 | MS.gene002248:CDS |
AATCCTCAACAGGCTGGTCA+GGG | 0.598924 | 2.3:-73306195 | MS.gene002248:intron |
TGCACATATCATGGAAATGG+AGG | 0.600277 | 2.3:-73303818 | MS.gene002248:intron |
CTCTATGATCCATTTGACAG+AGG | 0.602379 | 2.3:-73301065 | MS.gene002248:intron |
ATCCGGGCTTCAATATCAGA+AGG | 0.602819 | 2.3:+73307800 | None:intergenic |
TAGGGAAGCAGGAGACAACA+AGG | 0.603636 | 2.3:-73307927 | MS.gene002248:CDS |
AACATTGGTGGATCAAGTTG+GGG | 0.604755 | 2.3:-73301190 | MS.gene002248:CDS |
ATTCTCTCAAAATATTGTGA+AGG | 0.605167 | 2.3:-73306156 | MS.gene002248:intron |
TATAGCTTATGTCTCAAGCG+TGG | 0.605544 | 2.3:+73297461 | None:intergenic |
TGTGCAATCATGTTCTCTGA+TGG | 0.606823 | 2.3:+73303835 | None:intergenic |
CTGCCATACAAAATGCAACT+GGG | 0.608827 | 2.3:-73304307 | MS.gene002248:CDS |
CGACAACCGCGACCTGCGGG+AGG | 0.609355 | 2.3:+73310759 | None:intergenic |
CGAACAAGCTGAAGAACAAG+AGG | 0.610476 | 2.3:+73310647 | None:intergenic |
GACCTGCGGGAGGTTGATGG+CGG | 0.611523 | 2.3:+73310769 | None:intergenic |
ATTAACACATGCCTTGGACT+CGG | 0.611737 | 2.3:+73306367 | None:intergenic |
TAACCTAGTTACTGTCGCAA+AGG | 0.611834 | 2.3:-73306414 | MS.gene002248:CDS |
CAAGAGCGTCCTTTATACTC+CGG | 0.612482 | 2.3:+73307113 | None:intergenic |
GAGTACAGATTTCATTCCCA+CGG | 0.613805 | 2.3:+73310675 | None:intergenic |
GGCATTACGAAGGTTCCTGT+TGG | 0.614859 | 2.3:-73307830 | MS.gene002248:CDS |
CATTTGAAGTCCTCGTGCGA+AGG | 0.615870 | 2.3:-73304107 | MS.gene002248:CDS |
GGCAGGAGTAGCTGATCCTG+AGG | 0.616565 | 2.3:-73307678 | MS.gene002248:CDS |
ATGACACTTGTAGATCTCCC+AGG | 0.627712 | 2.3:-73307851 | MS.gene002248:CDS |
TCAGATGGCCTCAAGATAGG+AGG | 0.630399 | 2.3:+73300956 | None:intergenic |
AGACTTCACAGTTCTTTCAG+AGG | 0.630926 | 2.3:+73301592 | None:intergenic |
CAACACCAACATAGCCAAGT+CGG | 0.632300 | 2.3:+73307375 | None:intergenic |
ACCAACATAGCCAAGTCGGA+GGG | 0.633412 | 2.3:+73307379 | None:intergenic |
CACCAACATAGCCAAGTCGG+AGG | 0.641949 | 2.3:+73307378 | None:intergenic |
GTTCAGTCACCATACAGCGA+TGG | 0.649619 | 2.3:+73303929 | None:intergenic |
ACAGCTAGAATAAGACAGGA+AGG | 0.649873 | 2.3:+73307746 | None:intergenic |
TGGAGGTGATAAGTCTGCGA+GGG | 0.652552 | 2.3:-73301149 | MS.gene002248:CDS |
CCAACATAGCCAAGTCGGAG+GGG | 0.659468 | 2.3:+73307380 | None:intergenic |
AAGGAGGTAGATCCATGTGA+AGG | 0.663582 | 2.3:-73304353 | MS.gene002248:CDS |
CAAGCTGAAGAACAAGAGGT+CGG | 0.663698 | 2.3:+73310651 | None:intergenic |
AGAAGTGCATAATTGCTTTG+GGG | 0.664710 | 2.3:+73300837 | None:intergenic |
GGGAGAAAATGTCTTGAAGA+CGG | 0.664736 | 2.3:+73310807 | None:intergenic |
GCAGGAGTAGCTGATCCTGA+GGG | 0.668463 | 2.3:-73307677 | MS.gene002248:intron |
AACGATCGGTGTAATCACAA+AGG | 0.668665 | 2.3:-73307563 | MS.gene002248:intron |
GATGCCCGTAATCTGTTACA+GGG | 0.673379 | 2.3:-73307413 | MS.gene002248:CDS |
ATTCTTTCCGTCAACCATGG+AGG | 0.675433 | 2.3:+73305972 | None:intergenic |
GTTGAATACATTGATGACGT+TGG | 0.675586 | 2.3:+73297627 | None:intergenic |
GTATGGTGACTGAACTGCAG+AGG | 0.677814 | 2.3:-73303921 | MS.gene002248:CDS |
AGATCTCCCAGGCATTACGA+AGG | 0.678817 | 2.3:-73307840 | MS.gene002248:CDS |
GTTGTCGGAAGCCAGAGTAG+CGG | 0.679277 | 2.3:-73310743 | MS.gene002248:CDS |
TGTTATTCACAGGTATACAG+CGG | 0.686184 | 2.3:-73306984 | MS.gene002248:intron |
TGTTGTAAACCGTAGTCAGG+AGG | 0.686761 | 2.3:-73307357 | MS.gene002248:intron |
GTGGAGGTGATAAGTCTGCG+AGG | 0.707619 | 2.3:-73301150 | MS.gene002248:CDS |
TAGTTGGATATCATGGACAG+AGG | 0.713407 | 2.3:-73307440 | MS.gene002248:CDS |
TACAGATTTCATTCCCACGG+GGG | 0.715689 | 2.3:+73310678 | None:intergenic |
AGCGGTCTAGCAGATAGCTG+TGG | 0.723521 | 2.3:-73306966 | MS.gene002248:CDS |
AGGGAAGCAGGAGACAACAA+GGG | 0.743238 | 2.3:-73307926 | MS.gene002248:CDS |
GAGATGACACCGGAACCGAG+AGG | 0.756952 | 2.3:+73310839 | None:intergenic |
GTTAACGAGAGAGATGACAC+CGG | 0.760501 | 2.3:+73310829 | None:intergenic |
GTACAGATTTCATTCCCACG+GGG | 0.762865 | 2.3:+73310677 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 73297467 | 73310912 | 73297467 | ID=MS.gene002248 |
chr2.3 | mRNA | 73297467 | 73310912 | 73297467 | ID=MS.gene002248.t1;Parent=MS.gene002248 |
chr2.3 | exon | 73310556 | 73310912 | 73310556 | ID=MS.gene002248.t1.exon1;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73310556 | 73310912 | 73310556 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73307678 | 73307960 | 73307678 | ID=MS.gene002248.t1.exon2;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73307678 | 73307960 | 73307678 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73307564 | 73307592 | 73307564 | ID=MS.gene002248.t1.exon3;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73307564 | 73307592 | 73307564 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73307358 | 73307459 | 73307358 | ID=MS.gene002248.t1.exon4;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73307358 | 73307459 | 73307358 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73307081 | 73307149 | 73307081 | ID=MS.gene002248.t1.exon5;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73307081 | 73307149 | 73307081 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73306935 | 73306994 | 73306935 | ID=MS.gene002248.t1.exon6;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73306935 | 73306994 | 73306935 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73306379 | 73306492 | 73306379 | ID=MS.gene002248.t1.exon7;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73306379 | 73306492 | 73306379 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73306157 | 73306205 | 73306157 | ID=MS.gene002248.t1.exon8;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73306157 | 73306205 | 73306157 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73305891 | 73306000 | 73305891 | ID=MS.gene002248.t1.exon9;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73305891 | 73306000 | 73305891 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73304280 | 73304372 | 73304280 | ID=MS.gene002248.t1.exon10;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73304280 | 73304372 | 73304280 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73304041 | 73304133 | 73304041 | ID=MS.gene002248.t1.exon11;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73304041 | 73304133 | 73304041 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73303819 | 73303956 | 73303819 | ID=MS.gene002248.t1.exon12;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73303819 | 73303956 | 73303819 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73301748 | 73301861 | 73301748 | ID=MS.gene002248.t1.exon13;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73301748 | 73301861 | 73301748 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73301547 | 73301642 | 73301547 | ID=MS.gene002248.t1.exon14;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73301547 | 73301642 | 73301547 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73301385 | 73301427 | 73301385 | ID=MS.gene002248.t1.exon15;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73301385 | 73301427 | 73301385 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73301066 | 73301214 | 73301066 | ID=MS.gene002248.t1.exon16;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73301066 | 73301214 | 73301066 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73300835 | 73300981 | 73300835 | ID=MS.gene002248.t1.exon17;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73300835 | 73300981 | 73300835 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73299132 | 73299184 | 73299132 | ID=MS.gene002248.t1.exon18;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73299132 | 73299184 | 73299132 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73298929 | 73299028 | 73298929 | ID=MS.gene002248.t1.exon19;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73298929 | 73299028 | 73298929 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
chr2.3 | exon | 73297467 | 73297739 | 73297467 | ID=MS.gene002248.t1.exon20;Parent=MS.gene002248.t1 |
chr2.3 | CDS | 73297467 | 73297739 | 73297467 | ID=cds.MS.gene002248.t1;Parent=MS.gene002248.t1 |
Gene Sequence |
Protein sequence |