Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90230.t1 | RHN62652.1 | 99.2 | 765 | 6 | 0 | 1 | 765 | 1 | 765 | 0.00E+00 | 1464.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90230.t1 | Q8S944 | 71.7 | 759 | 196 | 5 | 9 | 757 | 31 | 780 | 3.6e-297 | 1021.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90230.t1 | A0A396IAM3 | 99.2 | 765 | 6 | 0 | 1 | 765 | 1 | 765 | 0.0e+00 | 1464.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90230 | MS.gene26060 | PPI |
| MS.gene90230 | MS.gene013409 | PPI |
| MS.gene022695 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene71381 | PPI |
| MS.gene059333 | MS.gene90230 | PPI |
| MS.gene39665 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene39347 | PPI |
| MS.gene90230 | MS.gene050237 | PPI |
| MS.gene90230 | MS.gene047680 | PPI |
| MS.gene90230 | MS.gene002248 | PPI |
| MS.gene90230 | MS.gene010879 | PPI |
| MS.gene059335 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene049382 | PPI |
| MS.gene90230 | MS.gene022695 | PPI |
| MS.gene06506 | MS.gene90230 | PPI |
| MS.gene010407 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene028493 | PPI |
| MS.gene90230 | MS.gene059331 | PPI |
| MS.gene90230 | MS.gene02205 | PPI |
| MS.gene90230 | MS.gene041137 | PPI |
| MS.gene90230 | MS.gene06504 | PPI |
| MS.gene050237 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene068015 | PPI |
| MS.gene056130 | MS.gene90230 | PPI |
| MS.gene90230 | MS.gene013407 | PPI |
| MS.gene90230 | MS.gene053588 | PPI |
| MS.gene90230 | MS.gene01221 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90230.t1 | MTR_4g093750 | 98.936 | 752 | 6 | 1 | 1 | 750 | 1 | 752 | 0.0 | 1518 |
| MS.gene90230.t1 | MTR_4g093750 | 98.955 | 670 | 5 | 1 | 1 | 670 | 1 | 668 | 0.0 | 1343 |
| MS.gene90230.t1 | MTR_2g009690 | 83.026 | 760 | 120 | 3 | 11 | 763 | 20 | 777 | 0.0 | 1279 |
| MS.gene90230.t1 | MTR_5g009150 | 38.632 | 497 | 285 | 4 | 15 | 499 | 4 | 492 | 2.36e-104 | 333 |
| MS.gene90230.t1 | MTR_4g098920 | 40.323 | 496 | 275 | 6 | 14 | 497 | 3 | 489 | 6.50e-100 | 321 |
| MS.gene90230.t1 | MTR_8g099550 | 38.540 | 493 | 282 | 5 | 15 | 495 | 4 | 487 | 1.07e-99 | 321 |
| MS.gene90230.t1 | MTR_8g027675 | 37.805 | 492 | 286 | 5 | 15 | 495 | 4 | 486 | 6.82e-97 | 313 |
| MS.gene90230.t1 | MTR_8g009510 | 38.431 | 497 | 282 | 5 | 14 | 495 | 6 | 493 | 4.57e-94 | 306 |
| MS.gene90230.t1 | MTR_8g105580 | 38.134 | 493 | 285 | 6 | 13 | 495 | 5 | 487 | 6.19e-94 | 305 |
| MS.gene90230.t1 | MTR_8g105580 | 38.134 | 493 | 285 | 6 | 13 | 495 | 5 | 487 | 1.13e-93 | 305 |
| MS.gene90230.t1 | MTR_7g451010 | 39.525 | 463 | 267 | 4 | 37 | 495 | 40 | 493 | 4.65e-92 | 301 |
| MS.gene90230.t1 | MTR_1g032550 | 36.714 | 493 | 293 | 5 | 13 | 495 | 5 | 488 | 6.72e-90 | 295 |
| MS.gene90230.t1 | MTR_8g009510 | 34.518 | 394 | 245 | 4 | 106 | 495 | 2 | 386 | 7.79e-59 | 209 |
| MS.gene90230.t1 | MTR_8g087750 | 37.346 | 324 | 183 | 7 | 35 | 352 | 69 | 378 | 3.19e-44 | 170 |
| MS.gene90230.t1 | MTR_8g087770 | 34.243 | 403 | 236 | 13 | 35 | 425 | 66 | 451 | 8.71e-43 | 166 |
| MS.gene90230.t1 | MTR_4g030140 | 22.653 | 490 | 315 | 17 | 40 | 499 | 42 | 497 | 1.30e-16 | 85.1 |
| MS.gene90230.t1 | MTR_8g463270 | 30.288 | 208 | 128 | 4 | 20 | 217 | 31 | 231 | 7.97e-15 | 79.0 |
| MS.gene90230.t1 | MTR_4g094300 | 30.052 | 193 | 127 | 5 | 32 | 217 | 35 | 226 | 2.32e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90230.t1 | AT4G33650 | 72.605 | 741 | 192 | 4 | 7 | 737 | 29 | 768 | 0.0 | 1084 |
| MS.gene90230.t1 | AT4G33650 | 72.237 | 742 | 194 | 4 | 7 | 737 | 29 | 769 | 0.0 | 1080 |
| MS.gene90230.t1 | AT2G14120 | 71.583 | 739 | 195 | 6 | 10 | 736 | 16 | 751 | 0.0 | 1059 |
| MS.gene90230.t1 | AT2G14120 | 71.448 | 739 | 196 | 6 | 10 | 736 | 16 | 751 | 0.0 | 1056 |
| MS.gene90230.t1 | AT2G14120 | 68.880 | 768 | 195 | 7 | 10 | 736 | 16 | 780 | 0.0 | 1042 |
| MS.gene90230.t1 | AT2G14120 | 71.508 | 723 | 191 | 6 | 10 | 720 | 16 | 735 | 0.0 | 1035 |
| MS.gene90230.t1 | AT5G42080 | 38.742 | 493 | 281 | 5 | 15 | 495 | 4 | 487 | 3.76e-100 | 322 |
| MS.gene90230.t1 | AT5G42080 | 38.742 | 493 | 281 | 5 | 15 | 495 | 4 | 487 | 3.76e-100 | 322 |
| MS.gene90230.t1 | AT3G61760 | 38.956 | 498 | 277 | 10 | 14 | 496 | 3 | 488 | 2.76e-98 | 316 |
| MS.gene90230.t1 | AT3G61760 | 38.755 | 498 | 278 | 10 | 14 | 496 | 3 | 488 | 3.58e-98 | 317 |
| MS.gene90230.t1 | AT5G42080 | 38.540 | 493 | 276 | 6 | 15 | 495 | 4 | 481 | 1.59e-97 | 315 |
| MS.gene90230.t1 | AT5G42080 | 41.589 | 428 | 231 | 4 | 15 | 432 | 4 | 422 | 4.38e-97 | 308 |
| MS.gene90230.t1 | AT3G61760 | 40.260 | 462 | 251 | 9 | 14 | 462 | 3 | 452 | 1.92e-96 | 308 |
| MS.gene90230.t1 | AT3G60190 | 37.405 | 524 | 302 | 7 | 14 | 522 | 6 | 518 | 1.24e-94 | 308 |
| MS.gene90230.t1 | AT2G44590 | 37.449 | 494 | 289 | 4 | 14 | 495 | 3 | 488 | 7.88e-93 | 303 |
| MS.gene90230.t1 | AT1G14830 | 37.602 | 492 | 288 | 5 | 14 | 495 | 6 | 488 | 2.10e-92 | 301 |
| MS.gene90230.t1 | AT2G44590 | 35.223 | 494 | 283 | 5 | 14 | 495 | 3 | 471 | 9.55e-80 | 267 |
| MS.gene90230.t1 | AT2G44590 | 35.223 | 494 | 283 | 5 | 14 | 495 | 3 | 471 | 9.88e-80 | 267 |
| MS.gene90230.t1 | AT1G60500 | 31.115 | 511 | 317 | 16 | 9 | 503 | 33 | 524 | 1.93e-47 | 179 |
| MS.gene90230.t1 | AT1G60530 | 39.130 | 276 | 145 | 7 | 9 | 275 | 30 | 291 | 5.17e-42 | 155 |
| MS.gene90230.t1 | AT1G10290 | 22.822 | 482 | 322 | 15 | 40 | 499 | 41 | 494 | 4.03e-18 | 89.7 |
| MS.gene90230.t1 | AT1G59610 | 22.614 | 482 | 323 | 14 | 40 | 499 | 41 | 494 | 1.16e-17 | 88.6 |
| MS.gene90230.t1 | AT1G53140 | 28.311 | 219 | 145 | 4 | 20 | 228 | 47 | 263 | 4.42e-12 | 70.5 |
| MS.gene90230.t1 | AT3G19720 | 29.082 | 196 | 125 | 7 | 32 | 217 | 43 | 234 | 3.80e-11 | 67.0 |
| MS.gene90230.t1 | AT3G19720 | 29.082 | 196 | 125 | 7 | 32 | 217 | 43 | 234 | 3.83e-11 | 67.4 |
| MS.gene90230.t1 | AT3G19720 | 29.082 | 196 | 125 | 7 | 32 | 217 | 43 | 234 | 4.51e-11 | 67.0 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCCACCAATAAAATT+TGG | 0.140968 | 4.2:-19948599 | None:intergenic |
| ATACCTCCATTTCTATGATA+TGG | 0.216407 | 4.2:-19946924 | None:intergenic |
| CTCTAAACTCCTCACAAATA+TGG | 0.260098 | 4.2:-19945617 | None:intergenic |
| TTAGGCAAGCCAGTTGTTTC+AGG | 0.269599 | 4.2:-19952006 | None:intergenic |
| CCAAATCCGCGCTGAAATTC+AGG | 0.271521 | 4.2:+19943678 | MS.gene90230:CDS |
| AAACGCATGGATGAAGTTAT+TGG | 0.289990 | 4.2:+19946856 | MS.gene90230:CDS |
| TCATGTCTTGCAGGCTGGAC+AGG | 0.292960 | 4.2:+19945304 | MS.gene90230:intron |
| CTGAATTTCAGCGCGGATTT+GGG | 0.296468 | 4.2:-19943677 | None:intergenic |
| CCTGAATTTCAGCGCGGATT+TGG | 0.307809 | 4.2:-19943678 | None:intergenic |
| TAAGGCGATCATGCACTTCT+TGG | 0.319960 | 4.2:+19949618 | MS.gene90230:CDS |
| CGATGCTCGGAATCTGTTAC+TGG | 0.328569 | 4.2:+19944317 | MS.gene90230:CDS |
| CAAGTCTTCTACAGTTTCTA+AGG | 0.329354 | 4.2:+19948649 | MS.gene90230:CDS |
| CTCATTCTTTCCCTCTACTA+TGG | 0.332851 | 4.2:-19945539 | None:intergenic |
| TACTTCCACCAATAAAATTT+GGG | 0.334413 | 4.2:-19948598 | None:intergenic |
| CATATTTGTGAGGAGTTTAG+AGG | 0.340009 | 4.2:+19945618 | MS.gene90230:CDS |
| ACCATCGGGATCAGCATTTC+CGG | 0.368627 | 4.2:-19944044 | None:intergenic |
| ATGTATTCTACTAGCAGTTC+AGG | 0.370412 | 4.2:+19952054 | MS.gene90230:CDS |
| GTTGCAGGTCATAGAACTAT+AGG | 0.371796 | 4.2:+19944154 | MS.gene90230:intron |
| TACACCGGCTAATTCTGATT+TGG | 0.373560 | 4.2:+19943997 | MS.gene90230:CDS |
| TCTTCATCGCAAATCTATAT+AGG | 0.379851 | 4.2:+19950237 | MS.gene90230:CDS |
| AACCACTGGTGGATCTAGTT+GGG | 0.393292 | 4.2:+19949242 | MS.gene90230:CDS |
| TCAGCTGATTCGAGTTTAGA+AGG | 0.393829 | 4.2:-19943616 | None:intergenic |
| TTCAACTTCTTTGCCAATTG+AGG | 0.398038 | 4.2:-19944820 | None:intergenic |
| TCTGATGGCCTCAAGATAGT+AGG | 0.401234 | 4.2:-19949496 | None:intergenic |
| TCTGACAAACCGGAGTATAA+AGG | 0.407487 | 4.2:+19944641 | MS.gene90230:CDS |
| GATCACCCATATCATAGAAA+TGG | 0.408482 | 4.2:+19946918 | MS.gene90230:CDS |
| TCATTGTCTCTGAGGGTTCA+AGG | 0.410651 | 4.2:-19946897 | None:intergenic |
| ATCGATAAAGTATTACATTC+AGG | 0.413000 | 4.2:+19949048 | MS.gene90230:CDS |
| GAGGCAGATATCTCGGCTAT+TGG | 0.417224 | 4.2:+19946646 | MS.gene90230:CDS |
| ATGTCTACATCTGAGCTATC+AGG | 0.419688 | 4.2:+19945565 | MS.gene90230:CDS |
| CACATCAAGGCTGTGCTACC+AGG | 0.427513 | 4.2:+19945076 | MS.gene90230:CDS |
| TGGATTGTAGTTGGATATCA+TGG | 0.427886 | 4.2:+19944284 | MS.gene90230:intron |
| CACAGTTCGCCTGAAACAAC+TGG | 0.430116 | 4.2:+19951997 | MS.gene90230:CDS |
| AACGCATGGATGAAGTTATT+GGG | 0.431365 | 4.2:+19946857 | MS.gene90230:CDS |
| CGCTAGACTTGCCGCTACTC+TGG | 0.431697 | 4.2:-19943501 | None:intergenic |
| TCAGATCAGCCATCGTTGTA+TGG | 0.438010 | 4.2:+19946801 | MS.gene90230:intron |
| TTTGTTGACTAGTGAGATTA+CGG | 0.438850 | 4.2:-19943407 | None:intergenic |
| ATCCAAGTCTTCAATGTGCC+AGG | 0.439754 | 4.2:+19946669 | MS.gene90230:CDS |
| CGCGGATTTGGGAGAAATCA+TGG | 0.440410 | 4.2:-19943666 | None:intergenic |
| TCCTAGCGGGGCGCCGTCGT+TGG | 0.445295 | 4.2:-19943380 | None:intergenic |
| GTGCTATTCTAGATATATAG+TGG | 0.449866 | 4.2:+19944775 | MS.gene90230:intron |
| GATGCTGTGGAATCTGATAA+AGG | 0.451482 | 4.2:+19948792 | MS.gene90230:CDS |
| TAGTTGTGGCGTTCCTCAAT+TGG | 0.451776 | 4.2:+19944807 | MS.gene90230:CDS |
| CTGATGGCCTCAAGATAGTA+GGG | 0.454854 | 4.2:-19949495 | None:intergenic |
| TACCTCCATTTCTATGATAT+GGG | 0.455897 | 4.2:-19946923 | None:intergenic |
| GAACCACTGGTGGATCTAGT+TGG | 0.459664 | 4.2:+19949241 | MS.gene90230:CDS |
| ACCGCCATACAGAATGCAAC+TGG | 0.461119 | 4.2:+19946448 | MS.gene90230:CDS |
| ATCAGGATATTCTGACAAAC+CGG | 0.462757 | 4.2:+19944631 | MS.gene90230:intron |
| CATGTCTTGCAGGCTGGACA+GGG | 0.466689 | 4.2:+19945305 | MS.gene90230:intron |
| AAGAAGTGCATGATCGCCTT+AGG | 0.473310 | 4.2:-19949616 | None:intergenic |
| CTTATTCGTGCCTTCAGCCC+TGG | 0.474395 | 4.2:-19945094 | None:intergenic |
| GATGGAAGCACACTTTGAAC+TGG | 0.475219 | 4.2:-19949342 | None:intergenic |
| TTGAAGCTGAAACGGTTGAG+TGG | 0.476160 | 4.2:+19951971 | MS.gene90230:CDS |
| CCGGAGTATAAAGGATGCTC+TGG | 0.477256 | 4.2:+19944650 | MS.gene90230:CDS |
| TCTTATTCTTGCTGTTACAC+CGG | 0.479476 | 4.2:+19943982 | MS.gene90230:CDS |
| ATGATCAGCCATTCCTCCAT+TGG | 0.480288 | 4.2:-19948865 | None:intergenic |
| TCCGATGCTCTTCAAATGGC+CGG | 0.486019 | 4.2:+19944025 | MS.gene90230:CDS |
| CCCCTCCGACTTGGTTATGT+CGG | 0.488295 | 4.2:+19944351 | MS.gene90230:CDS |
| GCTGAGACTGATAGGGAAGC+TGG | 0.491118 | 4.2:+19943782 | MS.gene90230:CDS |
| AGCGTAATGTCAAGAACATT+CGG | 0.491446 | 4.2:-19943854 | None:intergenic |
| CTTCCTCAGGTTGCCGTCGT+CGG | 0.495720 | 4.2:+19943475 | MS.gene90230:CDS |
| GAATTCCGATGCTCTTCAAA+TGG | 0.498046 | 4.2:+19944021 | MS.gene90230:CDS |
| ATCCACCATCGACCTTCCTC+AGG | 0.499024 | 4.2:+19943462 | MS.gene90230:CDS |
| GTCTCTGAACTTCTCTCTGA+TGG | 0.501227 | 4.2:-19949511 | None:intergenic |
| AGGTCCAGTTGCATTCTGTA+TGG | 0.505132 | 4.2:-19946452 | None:intergenic |
| GAGATATCTGCCTCCGTACA+AGG | 0.505354 | 4.2:-19946637 | None:intergenic |
| TCCGGCCATTTGAAGAGCAT+CGG | 0.507818 | 4.2:-19944026 | None:intergenic |
| TGTTGAGGATCTTATTCCTA+AGG | 0.508752 | 4.2:+19949600 | MS.gene90230:CDS |
| CCCTTTCTTGAGAAAACGCA+TGG | 0.509114 | 4.2:+19946843 | MS.gene90230:CDS |
| CTCCGTACAAGGACTTCAAA+CGG | 0.509243 | 4.2:-19946626 | None:intergenic |
| TATATATGACGAGTTAATGA+AGG | 0.509634 | 4.2:+19946694 | MS.gene90230:CDS |
| AACCTGGCACATTGAAGACT+TGG | 0.509646 | 4.2:-19946671 | None:intergenic |
| TTCCGTTTGAAGTCCTTGTA+CGG | 0.510952 | 4.2:+19946624 | MS.gene90230:CDS |
| GCTGAGTTTCTTCATTTACC+TGG | 0.511295 | 4.2:+19943634 | MS.gene90230:CDS |
| AGATTACGGTGGATCCTAGC+GGG | 0.512805 | 4.2:-19943393 | None:intergenic |
| CTTAGAAACTGTAGAAGACT+TGG | 0.514125 | 4.2:-19948648 | None:intergenic |
| CTCAAATGAATTGTAGAGGA+TGG | 0.514624 | 4.2:-19949360 | None:intergenic |
| TTGTACGGAGGCAGATATCT+CGG | 0.515018 | 4.2:+19946639 | MS.gene90230:CDS |
| GAGGAAGGTCGATGGTGGAT+TGG | 0.515721 | 4.2:-19943459 | None:intergenic |
| TGTTCTTGACATTACGCTTG+TGG | 0.517699 | 4.2:+19943859 | MS.gene90230:CDS |
| TGAAGCTGAAACGGTTGAGT+GGG | 0.519060 | 4.2:+19951972 | MS.gene90230:CDS |
| TCCAACGACGGCGCCCCGCT+AGG | 0.520684 | 4.2:+19943379 | MS.gene90230:CDS |
| CACGGCCGACGAGAGCTTCA+AGG | 0.522426 | 4.2:-19943525 | None:intergenic |
| AAAGTTATTCCCCTCCGACT+TGG | 0.523941 | 4.2:+19944342 | MS.gene90230:CDS |
| TTCTACAGTTTCTAAGGTGA+AGG | 0.527882 | 4.2:+19948655 | MS.gene90230:CDS |
| GCTACTCTGGCTGCCGACGA+CGG | 0.532120 | 4.2:-19943488 | None:intergenic |
| GCAAAGGAACATGCAAGCTA+TGG | 0.532385 | 4.2:+19945136 | MS.gene90230:CDS |
| ACTACCTCTTGAAGCTGAAA+CGG | 0.534191 | 4.2:+19951963 | MS.gene90230:CDS |
| GTAGAATACATAGAAGAAGT+TGG | 0.534563 | 4.2:-19952042 | None:intergenic |
| CGGTGTTGTAAATCGTAGCC+AGG | 0.534919 | 4.2:+19944371 | MS.gene90230:CDS |
| GGAACAAACAATGCTGCTCT+AGG | 0.536557 | 4.2:-19946472 | None:intergenic |
| TGGGTGATCATTGTCTCTGA+GGG | 0.537368 | 4.2:-19946904 | None:intergenic |
| ACGGGAACCTTGGTAATACC+AGG | 0.537492 | 4.2:-19943887 | None:intergenic |
| TTCCACCAATAAAATTTGGG+TGG | 0.538529 | 4.2:-19948595 | None:intergenic |
| TTGATCACCAACGGGAACCT+TGG | 0.539530 | 4.2:-19943897 | None:intergenic |
| TCTGAAGGTTGATCACCAAC+GGG | 0.540101 | 4.2:-19943905 | None:intergenic |
| GGCTGTGCTACCAGGGCTGA+AGG | 0.540827 | 4.2:+19945084 | MS.gene90230:CDS |
| ACTGGCTTGCCTAAAATTCG+CGG | 0.540843 | 4.2:+19952015 | MS.gene90230:CDS |
| TTTGTAGGCTGAGACTGATA+GGG | 0.547959 | 4.2:+19943775 | MS.gene90230:intron |
| TAAAAGCTTGTTGATAAGCT+CGG | 0.551504 | 4.2:-19950425 | None:intergenic |
| ATCTGAAGGTTGATCACCAA+CGG | 0.552721 | 4.2:-19943906 | None:intergenic |
| TGTATCCCCTCAGGAACCAC+TGG | 0.558758 | 4.2:+19949228 | MS.gene90230:intron |
| TGTGCAGATATCATTACCAC+GGG | 0.560734 | 4.2:-19943557 | None:intergenic |
| AAATCATGGAAAGTGCGGCC+AGG | 0.560881 | 4.2:-19943652 | None:intergenic |
| CCCTAACCAAACTATGGCGG+CGG | 0.561738 | 4.2:+19943354 | None:intergenic |
| TCCACCAATAAAATTTGGGT+GGG | 0.563887 | 4.2:-19948594 | None:intergenic |
| TTCACTTGTCAATCTTGCAA+AGG | 0.564530 | 4.2:+19945120 | MS.gene90230:CDS |
| CCAGAGCATCCTTTATACTC+CGG | 0.564711 | 4.2:-19944650 | None:intergenic |
| GATTCTTGCACAACACATCA+AGG | 0.565933 | 4.2:+19945063 | MS.gene90230:intron |
| ATTCTTTCCCTCTACTATGG+AGG | 0.566704 | 4.2:-19945536 | None:intergenic |
| GGATCAGCTTCTGAAAGAAG+TGG | 0.571099 | 4.2:+19948813 | MS.gene90230:CDS |
| TGGAGAAATCACGGAGTCCA+AGG | 0.574229 | 4.2:+19945156 | MS.gene90230:CDS |
| CTGCCGACGACGGCAACCTG+AGG | 0.575311 | 4.2:-19943478 | None:intergenic |
| ACAGCAAGAATAAGACAAGT+AGG | 0.575319 | 4.2:-19943974 | None:intergenic |
| TGGACAGAGGTACCGATGCT+CGG | 0.577331 | 4.2:+19944304 | MS.gene90230:CDS |
| ATTCTTTCAAAATACTCTGA+CGG | 0.579502 | 4.2:+19945344 | MS.gene90230:CDS |
| AGATAACCGTGTGTCTGTGA+AGG | 0.581518 | 4.2:+19949290 | MS.gene90230:CDS |
| ATTACGCTTGTGGATCTCCC+TGG | 0.582531 | 4.2:+19943869 | MS.gene90230:CDS |
| TGGTGGATTGGCTTCCGACA+CGG | 0.583448 | 4.2:-19943447 | None:intergenic |
| ATCCCCTCAGGAACCACTGG+TGG | 0.586660 | 4.2:+19949231 | MS.gene90230:intron |
| CGTTTGAAGTCCTTGTACGG+AGG | 0.587076 | 4.2:+19946627 | MS.gene90230:CDS |
| CACCCATATCATAGAAATGG+AGG | 0.587912 | 4.2:+19946921 | MS.gene90230:CDS |
| AGCATTCACCTCCATAGTAG+AGG | 0.588904 | 4.2:+19945528 | MS.gene90230:intron |
| CAAGACATCTTCAGCCGTGT+CGG | 0.591438 | 4.2:+19943433 | MS.gene90230:CDS |
| ACCACTGGTGGATCTAGTTG+GGG | 0.591737 | 4.2:+19949243 | MS.gene90230:CDS |
| CATAGTAGAGGGAAAGAATG+AGG | 0.594573 | 4.2:+19945540 | MS.gene90230:CDS |
| CTGAGCTATCAGGTGGAGCA+CGG | 0.598034 | 4.2:+19945575 | MS.gene90230:CDS |
| AGGGAAGCTGGAGGGAACAA+AGG | 0.599600 | 4.2:+19943794 | MS.gene90230:CDS |
| ATGGGTGATCATTGTCTCTG+AGG | 0.604160 | 4.2:-19946905 | None:intergenic |
| CTCTACAATTCATTTGAGAG+AGG | 0.605023 | 4.2:+19949365 | MS.gene90230:CDS |
| CAGTAACAGATTCCGAGCAT+CGG | 0.605265 | 4.2:-19944316 | None:intergenic |
| GGTATTACCAAGGTTCCCGT+TGG | 0.605870 | 4.2:+19943890 | MS.gene90230:CDS |
| TTCGCCAAATCAGAATTAGC+CGG | 0.606020 | 4.2:-19944001 | None:intergenic |
| ATTCTCGATTCGATATCTGA+AGG | 0.606620 | 4.2:-19943920 | None:intergenic |
| GGATCTCCCTGGTATTACCA+AGG | 0.609003 | 4.2:+19943880 | MS.gene90230:CDS |
| GCATTCACCTCCATAGTAGA+GGG | 0.609702 | 4.2:+19945529 | MS.gene90230:intron |
| CTCTCTCAAATGAATTGTAG+AGG | 0.611486 | 4.2:-19949364 | None:intergenic |
| TGCAAGCTATGGAGAAATCA+CGG | 0.611972 | 4.2:+19945147 | MS.gene90230:CDS |
| GGCAACCTGAGGAAGGTCGA+TGG | 0.612095 | 4.2:-19943467 | None:intergenic |
| CTTGCAAGACATGCCAATGG+AGG | 0.614495 | 4.2:+19948852 | MS.gene90230:CDS |
| CGACGACGGCAACCTGAGGA+AGG | 0.615993 | 4.2:-19943474 | None:intergenic |
| GATGCTCGGAATCTGTTACT+GGG | 0.618289 | 4.2:+19944318 | MS.gene90230:CDS |
| CACCGACATAACCAAGTCGG+AGG | 0.623102 | 4.2:-19944353 | None:intergenic |
| ACATCAAGGCTGTGCTACCA+GGG | 0.623492 | 4.2:+19945077 | MS.gene90230:CDS |
| AAGACATGCCAATGGAGGAA+TGG | 0.625106 | 4.2:+19948857 | MS.gene90230:CDS |
| GGCGGTACGAATATCATCAT+CGG | 0.625270 | 4.2:-19946431 | None:intergenic |
| GTCGTCGGCAGCCAGAGTAG+CGG | 0.628211 | 4.2:+19943490 | MS.gene90230:CDS |
| AGCGTCCTTGAAGCTCTCGT+CGG | 0.628965 | 4.2:+19943520 | MS.gene90230:CDS |
| TCCAGTTGCATTCTGTATGG+CGG | 0.635952 | 4.2:-19946449 | None:intergenic |
| ATGGCGGCGGTGTCCAACGA+CGG | 0.639282 | 4.2:+19943367 | MS.gene90230:CDS |
| TCAACCGTTTCAGCTTCAAG+AGG | 0.640027 | 4.2:-19951967 | None:intergenic |
| ATTCTTGCAAGACATGCCAA+TGG | 0.641227 | 4.2:+19948849 | MS.gene90230:CDS |
| AACTATAGGTGTCATAACCA+AGG | 0.647581 | 4.2:+19944168 | MS.gene90230:CDS |
| GGGAGAAATCATGGAAAGTG+CGG | 0.651182 | 4.2:-19943657 | None:intergenic |
| TAATTTCCAATAGGATGCTG+TGG | 0.652101 | 4.2:+19948779 | MS.gene90230:intron |
| ACCGACATAACCAAGTCGGA+GGG | 0.652428 | 4.2:-19944352 | None:intergenic |
| TAACTCGTCATATATAAACC+TGG | 0.654748 | 4.2:-19946687 | None:intergenic |
| AGTGGTCTAGCTGATAGTTG+TGG | 0.655528 | 4.2:+19944793 | MS.gene90230:CDS |
| TGATGGCCTCAAGATAGTAG+GGG | 0.656712 | 4.2:-19949494 | None:intergenic |
| GTGTGCAGATATCATTACCA+CGG | 0.659032 | 4.2:-19943558 | None:intergenic |
| GTTGACTAGTGAGATTACGG+TGG | 0.659709 | 4.2:-19943404 | None:intergenic |
| AACCTGAGGAAGGTCGATGG+TGG | 0.662103 | 4.2:-19943464 | None:intergenic |
| TATTCTCCTTCACAGACACA+CGG | 0.662699 | 4.2:-19949296 | None:intergenic |
| GAGACTGATAGGGAAGCTGG+AGG | 0.664102 | 4.2:+19943785 | MS.gene90230:CDS |
| GATGGCCTCAAGATAGTAGG+GGG | 0.667216 | 4.2:-19949493 | None:intergenic |
| GAAGCTGAAACGGTTGAGTG+GGG | 0.671223 | 4.2:+19951973 | MS.gene90230:CDS |
| TCATCGGTCAAGTCTTCACA+CGG | 0.672633 | 4.2:-19946415 | None:intergenic |
| TCTACATCTGAGCTATCAGG+TGG | 0.673530 | 4.2:+19945568 | MS.gene90230:CDS |
| GTGAACGAGTTGAAGAACGA+GGG | 0.674618 | 4.2:-19943587 | None:intergenic |
| GCCGGAAATGCTGATCCCGA+TGG | 0.676099 | 4.2:+19944043 | MS.gene90230:CDS |
| ATTGGCAAAGAAGTTGAACA+AGG | 0.682461 | 4.2:+19944825 | MS.gene90230:CDS |
| GCTGATTCGAGTTTAGAAGG+TGG | 0.684094 | 4.2:-19943613 | None:intergenic |
| CAACACCGACATAACCAAGT+CGG | 0.684240 | 4.2:-19944356 | None:intergenic |
| AGACTGATAGGGAAGCTGGA+GGG | 0.684734 | 4.2:+19943786 | MS.gene90230:CDS |
| TGAACGAGTTGAAGAACGAG+GGG | 0.688605 | 4.2:-19943586 | None:intergenic |
| CGGGAACCTTGGTAATACCA+GGG | 0.698106 | 4.2:-19943886 | None:intergenic |
| TGTGAACGAGTTGAAGAACG+AGG | 0.705690 | 4.2:-19943588 | None:intergenic |
| TAGTTGGATATCATGGACAG+AGG | 0.713407 | 4.2:+19944291 | MS.gene90230:intron |
| CCGACATAACCAAGTCGGAG+GGG | 0.714844 | 4.2:-19944351 | None:intergenic |
| GAGATTACGGTGGATCCTAG+CGG | 0.715884 | 4.2:-19943394 | None:intergenic |
| GTTCAGTCACCATACAACGA+TGG | 0.718083 | 4.2:-19946810 | None:intergenic |
| CCACTGGTGGATCTAGTTGG+GGG | 0.719711 | 4.2:+19949244 | MS.gene90230:CDS |
| GATTACGGTGGATCCTAGCG+GGG | 0.732843 | 4.2:-19943392 | None:intergenic |
| TGTTGTAAATCGTAGCCAGG+AGG | 0.732912 | 4.2:+19944374 | MS.gene90230:CDS |
| TGCAGATATCATTACCACGG+GGG | 0.754283 | 4.2:-19943555 | None:intergenic |
| ACTTCCTTACAGGATGACTG+CGG | 0.758275 | 4.2:-19944692 | None:intergenic |
| AAGGAACCTGAATTTCAGCG+CGG | 0.764271 | 4.2:-19943684 | None:intergenic |
| GTGCAGATATCATTACCACG+GGG | 0.768781 | 4.2:-19943556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19943367 | 19952089 | 19943367 | ID=MS.gene90230 |
| chr4.2 | mRNA | 19943367 | 19952089 | 19943367 | ID=MS.gene90230.t1;Parent=MS.gene90230 |
| chr4.2 | exon | 19943367 | 19943699 | 19943367 | ID=MS.gene90230.t1.exon1;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19943367 | 19943699 | 19943367 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19943782 | 19944064 | 19943782 | ID=MS.gene90230.t1.exon2;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19943782 | 19944064 | 19943782 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19944161 | 19944189 | 19944161 | ID=MS.gene90230.t1.exon3;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19944161 | 19944189 | 19944161 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19944294 | 19944395 | 19944294 | ID=MS.gene90230.t1.exon4;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19944294 | 19944395 | 19944294 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19944636 | 19944704 | 19944636 | ID=MS.gene90230.t1.exon5;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19944636 | 19944704 | 19944636 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19944787 | 19944846 | 19944787 | ID=MS.gene90230.t1.exon6;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19944787 | 19944846 | 19944787 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19945064 | 19945177 | 19945064 | ID=MS.gene90230.t1.exon7;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19945064 | 19945177 | 19945064 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19945317 | 19945365 | 19945317 | ID=MS.gene90230.t1.exon8;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19945317 | 19945365 | 19945317 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19945530 | 19945639 | 19945530 | ID=MS.gene90230.t1.exon9;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19945530 | 19945639 | 19945530 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19946406 | 19946498 | 19946406 | ID=MS.gene90230.t1.exon10;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19946406 | 19946498 | 19946406 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19946623 | 19946715 | 19946623 | ID=MS.gene90230.t1.exon11;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19946623 | 19946715 | 19946623 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19946805 | 19946942 | 19946805 | ID=MS.gene90230.t1.exon12;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19946805 | 19946942 | 19946805 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19948575 | 19948676 | 19948575 | ID=MS.gene90230.t1.exon13;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19948575 | 19948676 | 19948575 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19948792 | 19948887 | 19948792 | ID=MS.gene90230.t1.exon14;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19948792 | 19948887 | 19948792 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19949027 | 19949069 | 19949027 | ID=MS.gene90230.t1.exon15;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19949027 | 19949069 | 19949027 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19949241 | 19949386 | 19949241 | ID=MS.gene90230.t1.exon16;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19949241 | 19949386 | 19949241 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19949493 | 19949639 | 19949493 | ID=MS.gene90230.t1.exon17;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19949493 | 19949639 | 19949493 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19950206 | 19950258 | 19950206 | ID=MS.gene90230.t1.exon18;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19950206 | 19950258 | 19950206 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19950350 | 19950449 | 19950350 | ID=MS.gene90230.t1.exon19;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19950350 | 19950449 | 19950350 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| chr4.2 | exon | 19951952 | 19952089 | 19951952 | ID=MS.gene90230.t1.exon20;Parent=MS.gene90230.t1 |
| chr4.2 | CDS | 19951952 | 19952089 | 19951952 | ID=cds.MS.gene90230.t1;Parent=MS.gene90230.t1 |
| Gene Sequence |
| Protein sequence |