Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63052.t1 | XP_003614608.1 | 95.6 | 294 | 13 | 0 | 1 | 294 | 1 | 294 | 7.30E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63052.t1 | Q9C9G4 | 59.2 | 287 | 112 | 4 | 2 | 286 | 6 | 289 | 6.2e-96 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63052.t1 | G7K0J7 | 95.6 | 294 | 13 | 0 | 1 | 294 | 1 | 294 | 5.3e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene63052 | 0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene050467 | MS.gene63052 | 0.807519 | 4.86E-50 | -1.69E-46 |
| MS.gene050532 | MS.gene63052 | 0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene63052 | 0.862594 | 4.54E-64 | -1.69E-46 |
| MS.gene051127 | MS.gene63052 | 0.801324 | 9.50E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene63052 | 0.815194 | 1.05E-51 | -1.69E-46 |
| MS.gene053826 | MS.gene63052 | 0.983548 | 4.80E-158 | -1.69E-46 |
| MS.gene055549 | MS.gene63052 | 0.806329 | 8.67E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene63052 | 0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene055551 | MS.gene63052 | 0.813102 | 3.03E-51 | -1.69E-46 |
| MS.gene056310 | MS.gene63052 | 0.844967 | 5.44E-59 | -1.69E-46 |
| MS.gene056311 | MS.gene63052 | 0.8432 | 1.62E-58 | -1.69E-46 |
| MS.gene056408 | MS.gene63052 | 0.80614 | 9.50E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene63052 | 0.822995 | 1.76E-53 | -1.69E-46 |
| MS.gene05726 | MS.gene63052 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene057499 | MS.gene63052 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene058109 | MS.gene63052 | 0.8135 | 2.48E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene63052 | 0.823819 | 1.13E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene63052 | 0.832584 | 8.69E-56 | -1.69E-46 |
| MS.gene058173 | MS.gene63052 | 0.827067 | 1.92E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene63052 | 0.825541 | 4.43E-54 | -1.69E-46 |
| MS.gene058493 | MS.gene63052 | 0.831146 | 1.97E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene63052 | 0.833645 | 4.73E-56 | -1.69E-46 |
| MS.gene058628 | MS.gene63052 | 0.817465 | 3.25E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene63052 | 0.816549 | 5.22E-52 | -1.69E-46 |
| MS.gene058630 | MS.gene63052 | 0.826266 | 2.98E-54 | -1.69E-46 |
| MS.gene060187 | MS.gene63052 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene63052 | 0.817232 | 3.67E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene63052 | -0.805648 | 1.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63052 | MS.gene052539 | PPI |
| MS.gene63052 | MS.gene035220 | PPI |
| MS.gene63052 | MS.gene33739 | PPI |
| MS.gene63052 | MS.gene01769 | PPI |
| MS.gene63052 | MS.gene047520 | PPI |
| MS.gene63052 | MS.gene002383 | PPI |
| MS.gene63052 | MS.gene01361 | PPI |
| MS.gene63052 | MS.gene32189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63052.t1 | MTR_5g056140 | 95.578 | 294 | 13 | 0 | 1 | 294 | 1 | 294 | 0.0 | 595 |
| MS.gene63052.t1 | MTR_5g056160 | 78.716 | 296 | 61 | 1 | 1 | 294 | 1 | 296 | 2.50e-180 | 499 |
| MS.gene63052.t1 | MTR_1g110510 | 67.376 | 282 | 89 | 2 | 5 | 286 | 5 | 283 | 1.89e-144 | 407 |
| MS.gene63052.t1 | MTR_1g110510 | 65.066 | 229 | 77 | 2 | 5 | 233 | 5 | 230 | 5.70e-112 | 323 |
| MS.gene63052.t1 | MTR_4g090610 | 58.303 | 271 | 108 | 3 | 20 | 286 | 16 | 285 | 9.65e-110 | 320 |
| MS.gene63052.t1 | MTR_4g090610 | 57.664 | 274 | 111 | 3 | 20 | 289 | 60 | 332 | 1.47e-109 | 321 |
| MS.gene63052.t1 | MTR_4g090610 | 57.664 | 274 | 111 | 3 | 20 | 289 | 105 | 377 | 2.49e-109 | 322 |
| MS.gene63052.t1 | MTR_2g012440 | 45.423 | 284 | 142 | 6 | 8 | 286 | 16 | 291 | 3.61e-86 | 260 |
| MS.gene63052.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 16 | 208 | 2.61e-74 | 228 |
| MS.gene63052.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 60 | 252 | 4.57e-74 | 229 |
| MS.gene63052.t1 | MTR_5g056560 | 72.800 | 125 | 34 | 0 | 132 | 256 | 35 | 159 | 3.79e-66 | 205 |
| MS.gene63052.t1 | MTR_2g012440 | 44.749 | 219 | 111 | 4 | 8 | 222 | 16 | 228 | 8.66e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63052.t1 | AT1G68290 | 59.233 | 287 | 112 | 4 | 2 | 286 | 6 | 289 | 9.42e-125 | 358 |
| MS.gene63052.t1 | AT4G21585 | 55.755 | 278 | 116 | 4 | 17 | 289 | 18 | 293 | 4.63e-108 | 316 |
| MS.gene63052.t1 | AT4G21585 | 55.755 | 278 | 116 | 4 | 17 | 289 | 18 | 293 | 4.63e-108 | 316 |
| MS.gene63052.t1 | AT4G21585 | 50.987 | 304 | 116 | 5 | 17 | 289 | 18 | 319 | 6.03e-102 | 301 |
| MS.gene63052.t1 | AT4G21585 | 50.654 | 306 | 116 | 5 | 17 | 289 | 18 | 321 | 6.58e-102 | 301 |
| MS.gene63052.t1 | AT4G21590 | 50.345 | 290 | 131 | 4 | 11 | 293 | 9 | 292 | 2.07e-100 | 296 |
| MS.gene63052.t1 | AT4G21590 | 50.345 | 290 | 131 | 4 | 11 | 293 | 9 | 292 | 2.07e-100 | 296 |
| MS.gene63052.t1 | AT4G21600 | 47.119 | 295 | 148 | 5 | 5 | 293 | 2 | 294 | 2.21e-95 | 283 |
| MS.gene63052.t1 | AT1G11190 | 46.429 | 280 | 144 | 5 | 18 | 293 | 23 | 300 | 7.01e-89 | 267 |
| MS.gene63052.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 2.64e-72 | 223 |
| MS.gene63052.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 2.64e-72 | 223 |
Find 56 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCCACCCTTGTGTATTT+TGG | 0.057389 | 5.4:+44503283 | None:intergenic |
| AAGTCATTCTTTGCAGATTT+TGG | 0.191644 | 5.4:+44502959 | None:intergenic |
| GTAGCAAAGATGCTTGTAAA+TGG | 0.276468 | 5.4:-44501336 | MS.gene63052:CDS |
| TTGGGAGAGCTGCGGTTCTA+AGG | 0.355984 | 5.4:-44501638 | MS.gene63052:CDS |
| AAATTCAGAACATACGTAAT+CGG | 0.361018 | 5.4:+44501604 | None:intergenic |
| TTGTAAGTGCAAACATTATC+AGG | 0.396141 | 5.4:+44502860 | None:intergenic |
| ACTTGGCAAGTCAGTGTTCA+TGG | 0.401199 | 5.4:-44502940 | MS.gene63052:CDS |
| CAAAAGAAGGAATGAAACTA+TGG | 0.412666 | 5.4:+44503308 | None:intergenic |
| CCTTAGCAGCTGTGTTGCTT+AGG | 0.427310 | 5.4:+44502999 | None:intergenic |
| TGATAATGTTTGCACTTACA+AGG | 0.434514 | 5.4:-44502858 | MS.gene63052:CDS |
| GGGCTGATCAAGTAGAAGAT+TGG | 0.436637 | 5.4:-44501657 | MS.gene63052:CDS |
| GCGAAAGGAATAGAAGAGAT+TGG | 0.436694 | 5.4:+44502271 | None:intergenic |
| GATTGTATAGATCATAAAAC+TGG | 0.437632 | 5.4:-44502540 | MS.gene63052:CDS |
| CACTGCCAAAGTCGAGGAGC+TGG | 0.438071 | 5.4:+44502472 | None:intergenic |
| GGCTGATCAAGTAGAAGATT+GGG | 0.446590 | 5.4:-44501656 | MS.gene63052:CDS |
| CAAAGGAGGCAATGAAATTA+CGG | 0.449837 | 5.4:-44502107 | MS.gene63052:CDS |
| TTTCAATAAACAGAGAGAAT+GGG | 0.454542 | 5.4:-44501677 | MS.gene63052:intron |
| ACTACCCAGCTCCTCGACTT+TGG | 0.456718 | 5.4:-44502477 | MS.gene63052:CDS |
| GATCATAAAACTGGAACAAA+GGG | 0.458169 | 5.4:-44502531 | MS.gene63052:CDS |
| TCTGAAGGTTCAGTACTTGA+TGG | 0.464394 | 5.4:-44501298 | MS.gene63052:intron |
| TAGCAAAGATGCTTGTAAAT+GGG | 0.476783 | 5.4:-44501335 | MS.gene63052:CDS |
| CGAAAGGAATAGAAGAGATT+GGG | 0.477879 | 5.4:+44502272 | None:intergenic |
| GTCAATTTGCGATTAGCTCA+AGG | 0.486714 | 5.4:-44501157 | MS.gene63052:CDS |
| AATTCAGAACATACGTAATC+GGG | 0.489249 | 5.4:+44501605 | None:intergenic |
| ACACAAGGGTGGGGAGATGA+TGG | 0.491069 | 5.4:-44503276 | MS.gene63052:CDS |
| TGTGGCTTTGTCTCGGACAA+AGG | 0.496950 | 5.4:-44502124 | MS.gene63052:CDS |
| CCTAAGCAACACAGCTGCTA+AGG | 0.499770 | 5.4:-44502999 | MS.gene63052:CDS |
| TGCTTGTAAATGGGCATATG+AGG | 0.505629 | 5.4:-44501326 | MS.gene63052:CDS |
| CATTGTTTGTAAAATTGCTC+AGG | 0.515605 | 5.4:-44503247 | MS.gene63052:intron |
| TCTACATTGTGGCTTTGTCT+CGG | 0.516371 | 5.4:-44502131 | MS.gene63052:CDS |
| GGAATAGAAGAGATTGGGTG+AGG | 0.528683 | 5.4:+44502277 | None:intergenic |
| AGATCATAAAACTGGAACAA+AGG | 0.528782 | 5.4:-44502532 | MS.gene63052:CDS |
| GGTGTATCAGCAAAGTGTAA+AGG | 0.531752 | 5.4:+44502881 | None:intergenic |
| GATCCAAAATACACAAGGGT+GGG | 0.533922 | 5.4:-44503286 | MS.gene63052:CDS |
| TGACGATAGGAAAACGTGAC+AGG | 0.538079 | 5.4:+44501176 | None:intergenic |
| AGAACATACGTAATCGGGCA+TGG | 0.554903 | 5.4:+44501610 | None:intergenic |
| TCAATTTGCGATTAGCTCAA+GGG | 0.555653 | 5.4:-44501156 | MS.gene63052:CDS |
| ATCCAAAATACACAAGGGTG+GGG | 0.564859 | 5.4:-44503285 | MS.gene63052:CDS |
| CTTGGCAAGTCAGTGTTCAT+GGG | 0.569422 | 5.4:-44502939 | MS.gene63052:CDS |
| GCAATGAAATTACGGTTCGT+TGG | 0.576424 | 5.4:-44502099 | MS.gene63052:CDS |
| ACTGCCAAAGTCGAGGAGCT+GGG | 0.590281 | 5.4:+44502473 | None:intergenic |
| AATATGCAGCCTCTACATTG+TGG | 0.591586 | 5.4:-44502142 | MS.gene63052:intron |
| CAATTTGCGATTAGCTCAAG+GGG | 0.597955 | 5.4:-44501155 | MS.gene63052:CDS |
| GCTAATCGCAAATTGACGAT+AGG | 0.606094 | 5.4:+44501163 | None:intergenic |
| TGATCCAAAATACACAAGGG+TGG | 0.611055 | 5.4:-44503287 | MS.gene63052:CDS |
| TATCTCCCATAAAATGCGAA+AGG | 0.611343 | 5.4:+44502256 | None:intergenic |
| TGCAATTCAACAAAATATCA+CGG | 0.615303 | 5.4:-44501890 | MS.gene63052:intron |
| AAAATCTGCAAAGAATGACT+TGG | 0.616396 | 5.4:-44502957 | MS.gene63052:CDS |
| GGCTTTGTCTCGGACAAAGG+AGG | 0.625135 | 5.4:-44502121 | MS.gene63052:CDS |
| GCATATGAGGATGCATCTGA+AGG | 0.627996 | 5.4:-44501313 | MS.gene63052:CDS |
| CAGTGTCACTGCCAAAGTCG+AGG | 0.629675 | 5.4:+44502466 | None:intergenic |
| AACAAAGGGACGATGTGTCG+TGG | 0.633708 | 5.4:-44502517 | MS.gene63052:CDS |
| GAGACAAAGCCACAATGTAG+AGG | 0.640949 | 5.4:+44502133 | None:intergenic |
| ATGTGAGATTTATCTATCAG+TGG | 0.644941 | 5.4:-44502910 | MS.gene63052:CDS |
| GTAGAAGATTGGGAGAGCTG+CGG | 0.698014 | 5.4:-44501646 | MS.gene63052:CDS |
| AATTTGCGATTAGCTCAAGG+GGG | 0.760919 | 5.4:-44501154 | MS.gene63052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATAAATATATTGTTTAA+TGG | + | chr5.4:44501783-44501802 | None:intergenic | 10.0% |
| !! | TTAACTTATATGTAAATTAA+TGG | + | chr5.4:44502077-44502096 | None:intergenic | 10.0% |
| !!! | CGTTAATTTTTTATTTTTTT+TGG | - | chr5.4:44502622-44502641 | MS.gene63052:intron | 10.0% |
| !!! | TTAAATTGTATTTTATATGA+AGG | - | chr5.4:44502446-44502465 | MS.gene63052:intron | 10.0% |
| !!! | TTCAAATTTTAAAAAACAAA+AGG | + | chr5.4:44501821-44501840 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAAACCATAAA+TGG | - | chr5.4:44502910-44502929 | MS.gene63052:CDS | 15.0% |
| !!! | GTTATTTAATTTGAAAAGAA+AGG | + | chr5.4:44502007-44502026 | None:intergenic | 15.0% |
| !!! | TAATGTTTGAACTTTTAAAT+AGG | - | chr5.4:44501403-44501422 | MS.gene63052:intron | 15.0% |
| !!! | TTTTATTTTTTTTGGTTAAG+TGG | - | chr5.4:44502630-44502649 | MS.gene63052:intron | 15.0% |
| !!! | TTTTCATTTCTAAATTTGAT+TGG | - | chr5.4:44501343-44501362 | MS.gene63052:CDS | 15.0% |
| !! | ATCCTGTTATTAAATTTAGT+CGG | - | chr5.4:44501241-44501260 | MS.gene63052:intron | 20.0% |
| !! | GTTAGAACTATAGAAAAATT+TGG | - | chr5.4:44502981-44503000 | MS.gene63052:CDS | 20.0% |
| !! | TATAGAAGAAGAAATGAAAA+AGG | + | chr5.4:44501610-44501629 | None:intergenic | 20.0% |
| !!! | AAAAACAAAAGGTATTCATT+CGG | + | chr5.4:44501810-44501829 | None:intergenic | 20.0% |
| !!! | TATTAAATTTAGTCGGTTTT+TGG | - | chr5.4:44501248-44501267 | MS.gene63052:intron | 20.0% |
| !!! | TGTATTTTATATGAAGGTTT+GGG | - | chr5.4:44502452-44502471 | MS.gene63052:intron | 20.0% |
| !!! | TGTTGTTTTTTAAACATTCA+GGG | - | chr5.4:44501866-44501885 | MS.gene63052:intron | 20.0% |
| !!! | TTGTATTTTATATGAAGGTT+TGG | - | chr5.4:44502451-44502470 | MS.gene63052:intron | 20.0% |
| ! | AAATTCAGAACATACGTAAT+CGG | + | chr5.4:44502828-44502847 | None:intergenic | 25.0% |
| ! | AACCGACTAAATTTAATAAC+AGG | + | chr5.4:44501246-44501265 | None:intergenic | 25.0% |
| ! | ATCTATGTTACTCGAAAATT+TGG | - | chr5.4:44503022-44503041 | MS.gene63052:intron | 25.0% |
| ! | CTGAATGTTTAAAAAACAAC+AGG | + | chr5.4:44501867-44501886 | None:intergenic | 25.0% |
| ! | GAATATTTCATTAGCAAAGT+AGG | + | chr5.4:44501214-44501233 | None:intergenic | 25.0% |
| ! | GATTGTATAGATCATAAAAC+TGG | - | chr5.4:44501889-44501908 | MS.gene63052:intron | 25.0% |
| ! | TGCAATTCAACAAAATATCA+CGG | - | chr5.4:44502539-44502558 | MS.gene63052:CDS | 25.0% |
| ! | TTAGAGTATAAAAAATCGAG+TGG | + | chr5.4:44502111-44502130 | None:intergenic | 25.0% |
| ! | TTTCAATAAACAGAGAGAAT+GGG | - | chr5.4:44502752-44502771 | MS.gene63052:intron | 25.0% |
| !! | TTTTCAATAAACAGAGAGAA+TGG | - | chr5.4:44502751-44502770 | MS.gene63052:intron | 25.0% |
| !! | TTTTGATCCAAAATACACAA+GGG | - | chr5.4:44501139-44501158 | MS.gene63052:CDS | 25.0% |
| !!! | CTGTTGTTTTTTAAACATTC+AGG | - | chr5.4:44501865-44501884 | MS.gene63052:intron | 25.0% |
| !!! | GTTGTTTTTTAAACATTCAG+GGG | - | chr5.4:44501867-44501886 | MS.gene63052:intron | 25.0% |
| AAAATCTGCAAAGAATGACT+TGG | - | chr5.4:44501472-44501491 | MS.gene63052:intron | 30.0% | |
| AAGAAAGAAATGAGTCATGT+TGG | + | chr5.4:44502720-44502739 | None:intergenic | 30.0% | |
| AAGTTGCACATTTACTTAGA+TGG | + | chr5.4:44502263-44502282 | None:intergenic | 30.0% | |
| AATTCAGAACATACGTAATC+GGG | + | chr5.4:44502827-44502846 | None:intergenic | 30.0% | |
| AGATCATAAAACTGGAACAA+AGG | - | chr5.4:44501897-44501916 | MS.gene63052:CDS | 30.0% | |
| AGCAATGAATTTGACATACA+TGG | + | chr5.4:44502379-44502398 | None:intergenic | 30.0% | |
| ATAAAAAATCGAGTGGATGT+AGG | + | chr5.4:44502104-44502123 | None:intergenic | 30.0% | |
| ATGTGAGATTTATCTATCAG+TGG | - | chr5.4:44501519-44501538 | MS.gene63052:intron | 30.0% | |
| ATTTCATTAGCAAAGTAGGA+AGG | + | chr5.4:44501210-44501229 | None:intergenic | 30.0% | |
| CAAAAGAAGGAATGAAACTA+TGG | + | chr5.4:44501124-44501143 | None:intergenic | 30.0% | |
| CATTGTTTGTAAAATTGCTC+AGG | - | chr5.4:44501182-44501201 | MS.gene63052:CDS | 30.0% | |
| GAGTAACATAGATAAACTCA+AGG | + | chr5.4:44503015-44503034 | None:intergenic | 30.0% | |
| GATCATAAAACTGGAACAAA+GGG | - | chr5.4:44501898-44501917 | MS.gene63052:CDS | 30.0% | |
| TAGCAAAGATGCTTGTAAAT+GGG | - | chr5.4:44503094-44503113 | MS.gene63052:intron | 30.0% | |
| TTATGTTAATGCAAACCTGA+TGG | + | chr5.4:44502200-44502219 | None:intergenic | 30.0% | |
| TTGTAAGTGCAAACATTATC+AGG | + | chr5.4:44501572-44501591 | None:intergenic | 30.0% | |
| ! | AAGTCATTCTTTGCAGATTT+TGG | + | chr5.4:44501473-44501492 | None:intergenic | 30.0% |
| ! | CTATTCCTTTCGCATTTTAT+GGG | - | chr5.4:44502168-44502187 | MS.gene63052:intron | 30.0% |
| ! | CTGAGCAATTTTACAAACAA+TGG | + | chr5.4:44501184-44501203 | None:intergenic | 30.0% |
| ! | CTTTTGATCCAAAATACACA+AGG | - | chr5.4:44501138-44501157 | MS.gene63052:CDS | 30.0% |
| ! | TACTCGAAAATTTGGAATAC+AGG | - | chr5.4:44503030-44503049 | MS.gene63052:intron | 30.0% |
| ! | TCTAACTTTTAAGCTTGCAA+TGG | + | chr5.4:44502967-44502986 | None:intergenic | 30.0% |
| ! | TCTATTCCTTTCGCATTTTA+TGG | - | chr5.4:44502167-44502186 | MS.gene63052:intron | 30.0% |
| ! | TGATAATGTTTGCACTTACA+AGG | - | chr5.4:44501571-44501590 | MS.gene63052:intron | 30.0% |
| ! | TTTTAAACCAATGTGTGATG+TGG | - | chr5.4:44501714-44501733 | MS.gene63052:intron | 30.0% |
| !! | GTGTATTTTGGATCAAAAGA+AGG | + | chr5.4:44501137-44501156 | None:intergenic | 30.0% |
| ATAAACCGATGAAAACCAGA+TGG | + | chr5.4:44501665-44501684 | None:intergenic | 35.0% | |
| CAAAGGAGGCAATGAAATTA+CGG | - | chr5.4:44502322-44502341 | MS.gene63052:intron | 35.0% | |
| CAATGGAAGCAACTATTCTT+TGG | + | chr5.4:44502950-44502969 | None:intergenic | 35.0% | |
| CAATGTGTGATGTGGAAAAT+TGG | - | chr5.4:44501722-44501741 | MS.gene63052:intron | 35.0% | |
| CGAAAGGAATAGAAGAGATT+GGG | + | chr5.4:44502160-44502179 | None:intergenic | 35.0% | |
| GGAATACAGGTACTTAACTT+TGG | - | chr5.4:44503043-44503062 | MS.gene63052:intron | 35.0% | |
| GTAGCAAAGATGCTTGTAAA+TGG | - | chr5.4:44503093-44503112 | MS.gene63052:intron | 35.0% | |
| TACCAGAGATATTATACGCA+GGG | + | chr5.4:44502680-44502699 | None:intergenic | 35.0% | |
| TATCTCCCATAAAATGCGAA+AGG | + | chr5.4:44502176-44502195 | None:intergenic | 35.0% | |
| TCATACAAAAATGTGTGACG+TGG | + | chr5.4:44501690-44501709 | None:intergenic | 35.0% | |
| TTACTTTCACATCCAATGAG+AGG | + | chr5.4:44501751-44501770 | None:intergenic | 35.0% | |
| TTGGTTAAGTGGAAAATCTG+AGG | - | chr5.4:44502641-44502660 | MS.gene63052:intron | 35.0% | |
| ! | CAATTTTCCACATCACACAT+TGG | + | chr5.4:44501724-44501743 | None:intergenic | 35.0% |
| ! | TCAATTTGCGATTAGCTCAA+GGG | - | chr5.4:44503273-44503292 | MS.gene63052:CDS | 35.0% |
| ! | TTTTATGGGAGATATCCATC+AGG | - | chr5.4:44502182-44502201 | MS.gene63052:intron | 35.0% |
| !! | ACAATAAGAGCATTCAACTG+AGG | + | chr5.4:44502029-44502048 | None:intergenic | 35.0% |
| !! | ACAGAGGATTTTGCCATTTA+TGG | + | chr5.4:44502926-44502945 | None:intergenic | 35.0% |
| !!! | AAGCACTCAAGCATGTTTTT+TGG | + | chr5.4:44502240-44502259 | None:intergenic | 35.0% |
| !!! | AGCACTCAAGCATGTTTTTT+GGG | + | chr5.4:44502239-44502258 | None:intergenic | 35.0% |
| AATATGCAGCCTCTACATTG+TGG | - | chr5.4:44502287-44502306 | MS.gene63052:intron | 40.0% | |
| ACCAGAGATATTATACGCAG+GGG | + | chr5.4:44502679-44502698 | None:intergenic | 40.0% | |
| ATCCAAAATACACAAGGGTG+GGG | - | chr5.4:44501144-44501163 | MS.gene63052:CDS | 40.0% | |
| CTACCAGAGATATTATACGC+AGG | + | chr5.4:44502681-44502700 | None:intergenic | 40.0% | |
| GATCCAAAATACACAAGGGT+GGG | - | chr5.4:44501143-44501162 | MS.gene63052:CDS | 40.0% | |
| GCAATGAAATTACGGTTCGT+TGG | - | chr5.4:44502330-44502349 | MS.gene63052:intron | 40.0% | |
| GCGAAAGGAATAGAAGAGAT+TGG | + | chr5.4:44502161-44502180 | None:intergenic | 40.0% | |
| GCTAATCGCAAATTGACGAT+AGG | + | chr5.4:44503269-44503288 | None:intergenic | 40.0% | |
| GGCTGATCAAGTAGAAGATT+GGG | - | chr5.4:44502773-44502792 | MS.gene63052:intron | 40.0% | |
| GGTGTATCAGCAAAGTGTAA+AGG | + | chr5.4:44501551-44501570 | None:intergenic | 40.0% | |
| TCTGAAGGTTCAGTACTTGA+TGG | - | chr5.4:44503131-44503150 | MS.gene63052:intron | 40.0% | |
| TGATCCAAAATACACAAGGG+TGG | - | chr5.4:44501142-44501161 | MS.gene63052:CDS | 40.0% | |
| TGCTTGTAAATGGGCATATG+AGG | - | chr5.4:44503103-44503122 | MS.gene63052:intron | 40.0% | |
| TGTGTGATGTGGAAAATTGG+CGG | - | chr5.4:44501725-44501744 | MS.gene63052:intron | 40.0% | |
| ! | AATTTGCGATTAGCTCAAGG+GGG | - | chr5.4:44503275-44503294 | MS.gene63052:CDS | 40.0% |
| ! | CAATTTGCGATTAGCTCAAG+GGG | - | chr5.4:44503274-44503293 | MS.gene63052:CDS | 40.0% |
| ! | GAAAATCTGAGGTTCGAACA+TGG | - | chr5.4:44502652-44502671 | MS.gene63052:intron | 40.0% |
| ! | GTCAATTTGCGATTAGCTCA+AGG | - | chr5.4:44503272-44503291 | MS.gene63052:CDS | 40.0% |
| !! | GCAACTATTCTTTGGAACAG+AGG | + | chr5.4:44502942-44502961 | None:intergenic | 40.0% |
| !! | TCGTATTTTTGACGCACAGT+TGG | - | chr5.4:44503322-44503341 | MS.gene63052:CDS | 40.0% |
| !! | TCTACATTGTGGCTTTGTCT+CGG | - | chr5.4:44502298-44502317 | MS.gene63052:intron | 40.0% |
| !!! | ATCCACCATCTGGTTTTCAT+CGG | - | chr5.4:44501657-44501676 | MS.gene63052:CDS | 40.0% |
| AACCGATGAAAACCAGATGG+TGG | + | chr5.4:44501662-44501681 | None:intergenic | 45.0% | |
| ACCCCTGCGTATAATATCTC+TGG | - | chr5.4:44502675-44502694 | MS.gene63052:intron | 45.0% | |
| ACTTGGCAAGTCAGTGTTCA+TGG | - | chr5.4:44501489-44501508 | MS.gene63052:intron | 45.0% | |
| AGAACATACGTAATCGGGCA+TGG | + | chr5.4:44502822-44502841 | None:intergenic | 45.0% | |
| CTTGGCAAGTCAGTGTTCAT+GGG | - | chr5.4:44501490-44501509 | MS.gene63052:intron | 45.0% | |
| GAGACAAAGCCACAATGTAG+AGG | + | chr5.4:44502299-44502318 | None:intergenic | 45.0% | |
| GCATATGAGGATGCATCTGA+AGG | - | chr5.4:44503116-44503135 | MS.gene63052:intron | 45.0% | |
| GGAATAGAAGAGATTGGGTG+AGG | + | chr5.4:44502155-44502174 | None:intergenic | 45.0% | |
| GGGCTGATCAAGTAGAAGAT+TGG | - | chr5.4:44502772-44502791 | MS.gene63052:intron | 45.0% | |
| TCAAGTTCGAATCCACCATC+TGG | - | chr5.4:44501647-44501666 | MS.gene63052:CDS | 45.0% | |
| TGACGATAGGAAAACGTGAC+AGG | + | chr5.4:44503256-44503275 | None:intergenic | 45.0% | |
| ! | ATGTTGGTTAGCTCAGTTGG+TGG | + | chr5.4:44502704-44502723 | None:intergenic | 45.0% |
| ! | GTCATGTTGGTTAGCTCAGT+TGG | + | chr5.4:44502707-44502726 | None:intergenic | 45.0% |
| AACAAAGGGACGATGTGTCG+TGG | - | chr5.4:44501912-44501931 | MS.gene63052:CDS | 50.0% | |
| CCTAAGCAACACAGCTGCTA+AGG | - | chr5.4:44501430-44501449 | MS.gene63052:intron | 50.0% | |
| GAAAATTGGCGGCCTCTCAT+TGG | - | chr5.4:44501736-44501755 | MS.gene63052:intron | 50.0% | |
| GTAGAAGATTGGGAGAGCTG+CGG | - | chr5.4:44502783-44502802 | MS.gene63052:intron | 50.0% | |
| ! | CTCCCCACCCTTGTGTATTT+TGG | + | chr5.4:44501149-44501168 | None:intergenic | 50.0% |
| !! | CCTTAGCAGCTGTGTTGCTT+AGG | + | chr5.4:44501433-44501452 | None:intergenic | 50.0% |
| !! | TGTGGCTTTGTCTCGGACAA+AGG | - | chr5.4:44502305-44502324 | MS.gene63052:intron | 50.0% |
| ACACAAGGGTGGGGAGATGA+TGG | - | chr5.4:44501153-44501172 | MS.gene63052:CDS | 55.0% | |
| ACTACCCAGCTCCTCGACTT+TGG | - | chr5.4:44501952-44501971 | MS.gene63052:CDS | 55.0% | |
| ACTGCCAAAGTCGAGGAGCT+GGG | + | chr5.4:44501959-44501978 | None:intergenic | 55.0% | |
| AGCTCAAGGGGGAGTTCGAT+TGG | - | chr5.4:44503286-44503305 | MS.gene63052:CDS | 55.0% | |
| TTGGGAGAGCTGCGGTTCTA+AGG | - | chr5.4:44502791-44502810 | MS.gene63052:intron | 55.0% | |
| ! | CAGTGTCACTGCCAAAGTCG+AGG | + | chr5.4:44501966-44501985 | None:intergenic | 55.0% |
| ! | GGCTTTGTCTCGGACAAAGG+AGG | - | chr5.4:44502308-44502327 | MS.gene63052:intron | 55.0% |
| CACTGCCAAAGTCGAGGAGC+TGG | + | chr5.4:44501960-44501979 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 44501093 | 44503358 | 44501093 | ID=MS.gene63052 |
| chr5.4 | mRNA | 44501093 | 44503358 | 44501093 | ID=MS.gene63052.t1;Parent=MS.gene63052 |
| chr5.4 | exon | 44503248 | 44503358 | 44503248 | ID=MS.gene63052.t1.exon1;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44503248 | 44503358 | 44503248 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44502852 | 44503026 | 44502852 | ID=MS.gene63052.t1.exon2;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44502852 | 44503026 | 44502852 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44502457 | 44502564 | 44502457 | ID=MS.gene63052.t1.exon3;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44502457 | 44502564 | 44502457 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44502248 | 44502303 | 44502248 | ID=MS.gene63052.t1.exon4;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44502248 | 44502303 | 44502248 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44502072 | 44502155 | 44502072 | ID=MS.gene63052.t1.exon5;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44502072 | 44502155 | 44502072 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44501891 | 44501983 | 44501891 | ID=MS.gene63052.t1.exon6;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44501891 | 44501983 | 44501891 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44501619 | 44501686 | 44501619 | ID=MS.gene63052.t1.exon7;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44501619 | 44501686 | 44501619 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44501299 | 44501372 | 44501299 | ID=MS.gene63052.t1.exon8;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44501299 | 44501372 | 44501299 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| chr5.4 | exon | 44501093 | 44501208 | 44501093 | ID=MS.gene63052.t1.exon9;Parent=MS.gene63052.t1 |
| chr5.4 | CDS | 44501093 | 44501208 | 44501093 | ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1 |
| Gene Sequence |
| Protein sequence |
