AlfalfaGEDB | MS.gene63052

M. sativa cultivar XinJiangDaYe / MS.gene63052

KEGG: K05986
GO: GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575
PFAM: PF02265.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63052.t1	XP_003614608.1	95.6	294	13	0	1	294	1	294	7.30E-165	589.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63052.t1	Q9C9G4	59.2	287	112	4	2	286	6	289	6.2e-96	352.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63052.t1	G7K0J7	95.6	294	13	0	1	294	1	294	5.3e-165	589.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050381	MS.gene63052	0.813217	2.86E-51	-1.69E-46
MS.gene050467	MS.gene63052	0.807519	4.86E-50	-1.69E-46
MS.gene050532	MS.gene63052	0.81201	5.26E-51	-1.69E-46
MS.gene050883	MS.gene63052	0.862594	4.54E-64	-1.69E-46
MS.gene051127	MS.gene63052	0.801324	9.50E-49	-1.69E-46
MS.gene053549	MS.gene63052	0.815194	1.05E-51	-1.69E-46
MS.gene053826	MS.gene63052	0.983548	4.80E-158	-1.69E-46
MS.gene055549	MS.gene63052	0.806329	8.67E-50	-1.69E-46
MS.gene055550	MS.gene63052	0.803003	4.29E-49	-1.69E-46
MS.gene055551	MS.gene63052	0.813102	3.03E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene63052	MS.gene052539	PPI
MS.gene63052	MS.gene035220	PPI
MS.gene63052	MS.gene33739	PPI
MS.gene63052	MS.gene01769	PPI
MS.gene63052	MS.gene047520	PPI
MS.gene63052	MS.gene002383	PPI
MS.gene63052	MS.gene01361	PPI
MS.gene63052	MS.gene32189	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63052.t1	MTR_5g056140	95.578	294	13	0	1	294	1	294	0.0	595
MS.gene63052.t1	MTR_5g056160	78.716	296	61	1	1	294	1	296	2.50e-180	499
MS.gene63052.t1	MTR_1g110510	67.376	282	89	2	5	286	5	283	1.89e-144	407
MS.gene63052.t1	MTR_1g110510	65.066	229	77	2	5	233	5	230	5.70e-112	323
MS.gene63052.t1	MTR_4g090610	58.303	271	108	3	20	286	16	285	9.65e-110	320
MS.gene63052.t1	MTR_4g090610	57.664	274	111	3	20	289	60	332	1.47e-109	321
MS.gene63052.t1	MTR_4g090610	57.664	274	111	3	20	289	105	377	2.49e-109	322
MS.gene63052.t1	MTR_2g012440	45.423	284	142	6	8	286	16	291	3.61e-86	260
MS.gene63052.t1	MTR_4g090610	57.732	194	77	3	20	209	16	208	2.61e-74	228
MS.gene63052.t1	MTR_4g090610	57.732	194	77	3	20	209	60	252	4.57e-74	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63052.t1	AT1G68290	59.233	287	112	4	2	286	6	289	9.42e-125	358
MS.gene63052.t1	AT4G21585	55.755	278	116	4	17	289	18	293	4.63e-108	316
MS.gene63052.t1	AT4G21585	55.755	278	116	4	17	289	18	293	4.63e-108	316
MS.gene63052.t1	AT4G21585	50.987	304	116	5	17	289	18	319	6.03e-102	301
MS.gene63052.t1	AT4G21585	50.654	306	116	5	17	289	18	321	6.58e-102	301
MS.gene63052.t1	AT4G21590	50.345	290	131	4	11	293	9	292	2.07e-100	296
MS.gene63052.t1	AT4G21590	50.345	290	131	4	11	293	9	292	2.07e-100	296
MS.gene63052.t1	AT4G21600	47.119	295	148	5	5	293	2	294	2.21e-95	283
MS.gene63052.t1	AT1G11190	46.429	280	144	5	18	293	23	300	7.01e-89	267
MS.gene63052.t1	AT4G21585	47.755	245	95	5	17	230	18	260	2.64e-72	223

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Find 56 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGCAAAGAATGACT+TGG	0.616396	5.4:-44502957	MS.gene63052:CDS
AAATTCAGAACATACGTAAT+CGG	0.361018	5.4:+44501604	None:intergenic
AACAAAGGGACGATGTGTCG+TGG	0.633708	5.4:-44502517	MS.gene63052:CDS
AAGTCATTCTTTGCAGATTT+TGG	0.191644	5.4:+44502959	None:intergenic
AATATGCAGCCTCTACATTG+TGG	0.591586	5.4:-44502142	MS.gene63052:intron
AATTCAGAACATACGTAATC+GGG	0.489249	5.4:+44501605	None:intergenic
AATTTGCGATTAGCTCAAGG+GGG	0.760919	5.4:-44501154	MS.gene63052:CDS
ACACAAGGGTGGGGAGATGA+TGG	0.491069	5.4:-44503276	MS.gene63052:CDS
ACTACCCAGCTCCTCGACTT+TGG	0.456718	5.4:-44502477	MS.gene63052:CDS
ACTGCCAAAGTCGAGGAGCT+GGG	0.590281	5.4:+44502473	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTGCAAAGAATGACT+TGG	-	chr5.4:44501472-44501491	MS.gene63052:intron	30.0%
AAGAAAGAAATGAGTCATGT+TGG	+	chr5.4:44502720-44502739	None:intergenic	30.0%
AAGTTGCACATTTACTTAGA+TGG	+	chr5.4:44502263-44502282	None:intergenic	30.0%
AATTCAGAACATACGTAATC+GGG	+	chr5.4:44502827-44502846	None:intergenic	30.0%
AGATCATAAAACTGGAACAA+AGG	-	chr5.4:44501897-44501916	MS.gene63052:CDS	30.0%
AGCAATGAATTTGACATACA+TGG	+	chr5.4:44502379-44502398	None:intergenic	30.0%
ATAAAAAATCGAGTGGATGT+AGG	+	chr5.4:44502104-44502123	None:intergenic	30.0%
ATGTGAGATTTATCTATCAG+TGG	-	chr5.4:44501519-44501538	MS.gene63052:intron	30.0%
ATTTCATTAGCAAAGTAGGA+AGG	+	chr5.4:44501210-44501229	None:intergenic	30.0%
CAAAAGAAGGAATGAAACTA+TGG	+	chr5.4:44501124-44501143	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	44501093	44503358	44501093	ID=MS.gene63052
chr5.4	mRNA	44501093	44503358	44501093	ID=MS.gene63052.t1;Parent=MS.gene63052
chr5.4	exon	44503248	44503358	44503248	ID=MS.gene63052.t1.exon1;Parent=MS.gene63052.t1
chr5.4	CDS	44503248	44503358	44503248	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44502852	44503026	44502852	ID=MS.gene63052.t1.exon2;Parent=MS.gene63052.t1
chr5.4	CDS	44502852	44503026	44502852	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44502457	44502564	44502457	ID=MS.gene63052.t1.exon3;Parent=MS.gene63052.t1
chr5.4	CDS	44502457	44502564	44502457	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44502248	44502303	44502248	ID=MS.gene63052.t1.exon4;Parent=MS.gene63052.t1
chr5.4	CDS	44502248	44502303	44502248	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44502072	44502155	44502072	ID=MS.gene63052.t1.exon5;Parent=MS.gene63052.t1
chr5.4	CDS	44502072	44502155	44502072	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44501891	44501983	44501891	ID=MS.gene63052.t1.exon6;Parent=MS.gene63052.t1
chr5.4	CDS	44501891	44501983	44501891	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44501619	44501686	44501619	ID=MS.gene63052.t1.exon7;Parent=MS.gene63052.t1
chr5.4	CDS	44501619	44501686	44501619	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44501299	44501372	44501299	ID=MS.gene63052.t1.exon8;Parent=MS.gene63052.t1
chr5.4	CDS	44501299	44501372	44501299	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1
chr5.4	exon	44501093	44501208	44501093	ID=MS.gene63052.t1.exon9;Parent=MS.gene63052.t1
chr5.4	CDS	44501093	44501208	44501093	ID=cds.MS.gene63052.t1;Parent=MS.gene63052.t1

Gene Sequence

>MS.gene63052

ATGGGTTGTTATAGAATTGTACTTGTAGCCATAGTTTCATTCCTTCTTTTGATCCAAAATACACAAGGGTGGGGAGATGATGGACATGCCATTGTTTGTAAAATTGCTCAGGTGCCTTCCTACTTTGCTAATGAAATATTCTTTACTAATCCTGTTATTAAATTTAGTCGGTTTTTGGATCAGATATTGATTTTTTTTTTTTTTTTAAAATAGTAATGAAAAAAATGAAAGATTGATTTAATTTTATTTTTTTTCATTTCTAAATTTGATTGGTAATAATTTCTATTATCATGTGTTCTGATTTTAGTTGTAATGTTTGAACTTTTAAATAGGCTCGCCTAAGCAACACAGCTGCTAAGGCTGTGAAAAAATTGTTACCAAAATCTGCAAAGAATGACTTGGCAAGTCAGTGTTCATGGGCAGATCATGTGAGATTTATCTATCAGTGGTCTTCTCCTTTACACTTTGCTGATACACCTGATAATGTTTGCACTTACAAGGACAAAAGTAACATCCTTTTTCATTTCTTCTTCTATATATAATGACTCTATGTTTCAAGTTCGAATCCACCATCTGGTTTTCATCGGTTTATTTCCACGTCACACATTTTTGTATGAATATTTTTAAACCAATGTGTGATGTGGAAAATTGGCGGCCTCTCATTGGATGTGAAAGTAACATTGTAAACCATTAAACAATATATTTATATCGTGACCGAATGAATACCTTTTGTTTTTTAAAATTTGAAAAAACATTTTGCTATAGTACTGACCTGTTGTTTTTTAAACATTCAGGGGATTGTATAGATCATAAAACTGGAACAAAGGGACGATGTGTCGTGGCAGCAATAAGCAATTACACTACCCAGCTCCTCGACTTTGGCAGTGACACTGAATCTCAATGTAAAACATCCTTTCTTTTCAAATTAAATAACCTCAGTTGAATGCTCTTATTGTGTTTTTGTAAGTTTATATAATTTGACCATTAATTTACATATAAGTTAACAATCCTACATCCACTCGATTTTTTATACTCTAACATCGATCGTTTATCAGATAACCTCACCCAATCTCTTCTATTCCTTTCGCATTTTATGGGAGATATCCATCAGGTTTGCATTAACATAAGCAAAATCAAATATCTCCCAAAAAACATGCTTGAGTGCTTCCATCTAAGTAAATGTGCAACTTGTTTAATATGCAGCCTCTACATTGTGGCTTTGTCTCGGACAAAGGAGGCAATGAAATTACGGTTCGTTGGTACAATAGAAAACAAAATCTTCACCATGTATGTCAAATTCATTGCTTCATCTATAATAGAACGTACATATGATATATATTTTTCTATTCATTATTAAATTGTATTTTATATGAAGGTTTGGGATGTTAGCATAATTGAGACAGAAGTTGAAAGATTCTATGACTCAGAACTAAGCGAGTTCGTTGATGCAATTCAACAAAATATCACGGTACATGATATGTCTTTAATTTGTAAAATCAGTACGAGAAATTGTGTTTTGAAGTTTTTTACGTTAATTTTTTATTTTTTTTGGTTAAGTGGAAAATCTGAGGTTCGAACATGGACCCCTGCGTATAATATCTCTGGTAGCCACCAACTGAGCTAACCAACATGACTCATTTCTTTCTTCTAAAATTCTTTTTTCAATAAACAGAGAGAATGGGCTGATCAAGTAGAAGATTGGGAGAGCTGCGGTTCTAAGGATACTCCATGCCCGATTACGTATGTTCTGAATTTTGTTCAAATTTTTTAAATGTCATATTAAGTATTGAAAAATAATATACATGTTGTAGAAAGAAAGAAAAAAAAAAACCATAAATGGCAAAATCCTCTGTTCCAAAGAATAGTTGCTTCCATTGCAAGCTTAAAAGTTAGAACTATAGAAAAATTTGGTTTATATACCTTGAGTTTATCTATGTTACTCGAAAATTTGGAATACAGGTACTTAACTTTGGTCTATTTTTTCAGATATGCTACTGAAAGTAGCAAAGATGCTTGTAAATGGGCATATGAGGATGCATCTGAAGGTTCAGTACTTGATGGTAAGCTATCAGAAAAATTTAGAAGTAGAACTATGCTGTTTGACACTTTTTATAGTTTGTTTAATTATATCATGAAAATATTCTTTGCAGATGATTACTTCCTGTCACGTTTTCCTATCGTCAATTTGCGATTAGCTCAAGGGGGAGTTCGATTGGCTGCAACTCTGAATCGTATTTTTGACGCACAGTTGGCAATGTCGATGTGA

Protein sequence

>MS.gene63052.t1

MGCYRIVLVAIVSFLLLIQNTQGWGDDGHAIVCKIAQARLSNTAAKAVKKLLPKSAKNDLASQCSWADHVRFIYQWSSPLHFADTPDNVCTYKDKRDCIDHKTGTKGRCVVAAISNYTTQLLDFGSDTESQYNLTQSLLFLSHFMGDIHQPLHCGFVSDKGGNEITVRWYNRKQNLHHVWDVSIIETEVERFYDSELSEFVDAIQQNITREWADQVEDWESCGSKDTPCPITYATESSKDACKWAYEDASEGSVLDDDYFLSRFPIVNLRLAQGGVRLAATLNRIFDAQLAMSM