Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65672.t1 | XP_003614608.1 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 3.30E-165 | 590.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65672.t1 | Q9C9G4 | 58.9 | 287 | 113 | 4 | 2 | 286 | 6 | 289 | 1.1e-95 | 351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65672.t1 | G7K0J7 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 2.4e-165 | 590.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene65672 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene049281 | MS.gene65672 | 0.810507 | 1.11E-50 | -1.69E-46 |
| MS.gene049312 | MS.gene65672 | 0.800397 | 1.47E-48 | -1.69E-46 |
| MS.gene050129 | MS.gene65672 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene65672 | 0.827764 | 1.31E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene65672 | -0.811795 | 5.86E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene65672 | -0.807137 | 5.85E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene65672 | -0.801505 | 8.72E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene65672 | -0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene65672 | 0.84543 | 4.08E-59 | -1.69E-46 |
| MS.gene051044 | MS.gene65672 | 0.824071 | 9.85E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene65672 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene051946 | MS.gene65672 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene65672 | 0.827084 | 1.90E-54 | -1.69E-46 |
| MS.gene053826 | MS.gene65672 | 0.910003 | 3.04E-82 | -1.69E-46 |
| MS.gene054056 | MS.gene65672 | 0.812615 | 3.88E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene65672 | 0.804998 | 1.65E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene65672 | -0.802077 | 6.66E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene65672 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene055550 | MS.gene65672 | 0.800137 | 1.66E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene65672 | -0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene65672 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene65672 | 0.820567 | 6.41E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene65672 | 0.824848 | 6.46E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene65672 | -0.821687 | 3.54E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene65672 | 0.82036 | 7.15E-53 | -1.69E-46 |
| MS.gene058099 | MS.gene65672 | 0.819662 | 1.03E-52 | -1.69E-46 |
| MS.gene058109 | MS.gene65672 | 0.81771 | 2.86E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene65672 | 0.849758 | 2.63E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene65672 | 0.832564 | 8.80E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene65672 | 0.842386 | 2.67E-58 | -1.69E-46 |
| MS.gene058268 | MS.gene65672 | 0.818528 | 1.87E-52 | -1.69E-46 |
| MS.gene058269 | MS.gene65672 | 0.807374 | 5.22E-50 | -1.69E-46 |
| MS.gene058493 | MS.gene65672 | 0.829615 | 4.66E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene65672 | 0.806548 | 7.80E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene65672 | 0.821315 | 4.31E-53 | -1.69E-46 |
| MS.gene058629 | MS.gene65672 | 0.827156 | 1.83E-54 | -1.69E-46 |
| MS.gene058630 | MS.gene65672 | 0.825839 | 3.77E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene65672 | -0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene65672 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene65672 | -0.827497 | 1.51E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene65672 | 0.832581 | 8.71E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene65672 | -0.829581 | 4.75E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene65672 | -0.824188 | 9.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65672 | MS.gene002383 | PPI |
| MS.gene65672 | MS.gene052539 | PPI |
| MS.gene047520 | MS.gene65672 | PPI |
| MS.gene33739 | MS.gene65672 | PPI |
| MS.gene01361 | MS.gene65672 | PPI |
| MS.gene65672 | MS.gene01769 | PPI |
| MS.gene035220 | MS.gene65672 | PPI |
| MS.gene32189 | MS.gene65672 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65672.t1 | MTR_5g056140 | 95.238 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 0.0 | 594 |
| MS.gene65672.t1 | MTR_5g056160 | 78.041 | 296 | 63 | 1 | 1 | 294 | 1 | 296 | 8.34e-179 | 495 |
| MS.gene65672.t1 | MTR_1g110510 | 67.376 | 282 | 89 | 2 | 5 | 286 | 5 | 283 | 4.89e-144 | 406 |
| MS.gene65672.t1 | MTR_1g110510 | 65.066 | 229 | 77 | 2 | 5 | 233 | 5 | 230 | 9.12e-112 | 323 |
| MS.gene65672.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 16 | 288 | 7.26e-111 | 323 |
| MS.gene65672.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 60 | 332 | 9.72e-111 | 324 |
| MS.gene65672.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 105 | 377 | 2.44e-110 | 325 |
| MS.gene65672.t1 | MTR_2g012440 | 45.423 | 284 | 142 | 6 | 8 | 286 | 16 | 291 | 4.29e-86 | 260 |
| MS.gene65672.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 16 | 208 | 3.90e-74 | 228 |
| MS.gene65672.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 60 | 252 | 5.38e-74 | 229 |
| MS.gene65672.t1 | MTR_2g012440 | 44.749 | 219 | 111 | 4 | 8 | 222 | 16 | 228 | 1.37e-65 | 205 |
| MS.gene65672.t1 | MTR_5g056560 | 71.200 | 125 | 36 | 0 | 132 | 256 | 35 | 159 | 6.53e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65672.t1 | AT1G68290 | 58.885 | 287 | 113 | 4 | 2 | 286 | 6 | 289 | 3.82e-124 | 356 |
| MS.gene65672.t1 | AT4G21585 | 55.160 | 281 | 119 | 4 | 11 | 286 | 12 | 290 | 4.11e-107 | 313 |
| MS.gene65672.t1 | AT4G21585 | 55.160 | 281 | 119 | 4 | 11 | 286 | 12 | 290 | 4.11e-107 | 313 |
| MS.gene65672.t1 | AT4G21585 | 51.495 | 301 | 113 | 5 | 17 | 286 | 18 | 316 | 5.22e-101 | 299 |
| MS.gene65672.t1 | AT4G21585 | 51.155 | 303 | 113 | 5 | 17 | 286 | 18 | 318 | 7.81e-101 | 298 |
| MS.gene65672.t1 | AT4G21590 | 50.000 | 290 | 132 | 4 | 11 | 293 | 9 | 292 | 1.65e-99 | 294 |
| MS.gene65672.t1 | AT4G21590 | 50.000 | 290 | 132 | 4 | 11 | 293 | 9 | 292 | 1.65e-99 | 294 |
| MS.gene65672.t1 | AT4G21600 | 47.797 | 295 | 144 | 6 | 5 | 291 | 2 | 294 | 5.90e-95 | 282 |
| MS.gene65672.t1 | AT1G11190 | 46.429 | 280 | 144 | 5 | 18 | 293 | 23 | 300 | 1.97e-88 | 266 |
| MS.gene65672.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 8.54e-72 | 222 |
| MS.gene65672.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 8.54e-72 | 222 |
Find 62 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCCACCCTTGTGTATTT+TGG | 0.057389 | 5.2:+48257684 | None:intergenic |
| AAGTCATTCTTTGCAGATTT+TGG | 0.191644 | 5.2:+48257352 | None:intergenic |
| TCAGATAGAACATACGTAAT+TGG | 0.213166 | 5.2:+48256026 | None:intergenic |
| GTAGCAAAGATGCTTGTAAA+TGG | 0.276468 | 5.2:-48255715 | MS.gene65672:CDS |
| TTGGGAGAGCTGCGGTTCTA+AGG | 0.355984 | 5.2:-48256060 | MS.gene65672:CDS |
| TTGTAAGTGCAAACATTATC+AGG | 0.396141 | 5.2:+48257253 | None:intergenic |
| ACTTGGCAAGTCAGTGTTCA+TGG | 0.401199 | 5.2:-48257333 | MS.gene65672:CDS |
| CAAAAGAAGGAATGAAACTA+TGG | 0.412666 | 5.2:+48257709 | None:intergenic |
| CCTTAGCAGCTGTGTTGCTT+AGG | 0.427310 | 5.2:+48257392 | None:intergenic |
| CAGATAGAACATACGTAATT+GGG | 0.429673 | 5.2:+48256027 | None:intergenic |
| TGATAATGTTTGCACTTACA+AGG | 0.434514 | 5.2:-48257251 | MS.gene65672:CDS |
| GGGCTGATCAAGTAGAAGAT+TGG | 0.436637 | 5.2:-48256079 | MS.gene65672:CDS |
| GCGAAAGGAATAGAAGAGAT+TGG | 0.436694 | 5.2:+48256691 | None:intergenic |
| CACTGCCAAAGTCGAGGAGC+TGG | 0.438071 | 5.2:+48256892 | None:intergenic |
| GATCATAAAACGGGAACAAA+GGG | 0.438189 | 5.2:-48256951 | MS.gene65672:CDS |
| GGCTGATCAAGTAGAAGATT+GGG | 0.446590 | 5.2:-48256078 | MS.gene65672:CDS |
| CAAAGGAGGCAATGAAATTA+CGG | 0.449837 | 5.2:-48256527 | MS.gene65672:CDS |
| TTTCAATAAACAGAGAGAAT+GGG | 0.454542 | 5.2:-48256099 | MS.gene65672:intron |
| ACTACCCAGCTCCTCGACTT+TGG | 0.456718 | 5.2:-48256897 | MS.gene65672:CDS |
| TCTGAAGGTTCAGTACTTGA+TGG | 0.464394 | 5.2:-48255677 | MS.gene65672:intron |
| TAGCAAAGATGCTTGTAAAT+GGG | 0.476783 | 5.2:-48255714 | MS.gene65672:CDS |
| CGAAAGGAATAGAAGAGATT+GGG | 0.477879 | 5.2:+48256692 | None:intergenic |
| ACACAAGGGTGGGGAGATGA+TGG | 0.491069 | 5.2:-48257677 | MS.gene65672:CDS |
| TGTGGCTTTGTCTCGGACAA+AGG | 0.496950 | 5.2:-48256544 | MS.gene65672:CDS |
| CCTAAGCAACACAGCTGCTA+AGG | 0.499770 | 5.2:-48257392 | MS.gene65672:CDS |
| TGCTTGTAAATGGGCATATG+AGG | 0.505629 | 5.2:-48255705 | MS.gene65672:CDS |
| ATGTGAGGTTTATCTATCAA+TGG | 0.508536 | 5.2:-48257303 | MS.gene65672:CDS |
| CATTGTTTGTAAAATTGCTC+AGG | 0.515605 | 5.2:-48257648 | MS.gene65672:intron |
| TCTACATTGTGGCTTTGTCT+CGG | 0.516371 | 5.2:-48256551 | MS.gene65672:CDS |
| GATTGTATAGATCATAAAAC+GGG | 0.525737 | 5.2:-48256960 | MS.gene65672:CDS |
| GTCAATTTGCGATTAGCTCA+AGG | 0.525830 | 5.2:-48255529 | MS.gene65672:CDS |
| AGCTCAAGGAGGTGTTCGAT+TGG | 0.528636 | 5.2:-48255515 | MS.gene65672:CDS |
| GGAATAGAAGAGATTGGGTG+AGG | 0.528683 | 5.2:+48256697 | None:intergenic |
| GGTGTATCAGCAAAGTGTAA+AGG | 0.531752 | 5.2:+48257274 | None:intergenic |
| GATCCAAAATACACAAGGGT+GGG | 0.533922 | 5.2:-48257687 | MS.gene65672:CDS |
| GGATTGTATAGATCATAAAA+CGG | 0.534354 | 5.2:-48256961 | MS.gene65672:CDS |
| TGACGATAGGAAAACGTGAC+AGG | 0.538079 | 5.2:+48255548 | None:intergenic |
| AGATCATAAAACGGGAACAA+AGG | 0.544514 | 5.2:-48256952 | MS.gene65672:CDS |
| AACAAAGGGGCGATGTGTCG+TGG | 0.561261 | 5.2:-48256937 | MS.gene65672:CDS |
| GAACATACGTAATTGGGCAC+GGG | 0.562621 | 5.2:+48256033 | None:intergenic |
| ATCCAAAATACACAAGGGTG+GGG | 0.564859 | 5.2:-48257686 | MS.gene65672:CDS |
| CTTGGCAAGTCAGTGTTCAT+GGG | 0.569422 | 5.2:-48257332 | MS.gene65672:CDS |
| GCAATGAAATTACGGTTCGT+TGG | 0.576424 | 5.2:-48256519 | MS.gene65672:CDS |
| CACATCGACATTGCCAACTG+TGG | 0.579949 | 5.2:+48255466 | None:intergenic |
| ACTGCCAAAGTCGAGGAGCT+GGG | 0.590281 | 5.2:+48256893 | None:intergenic |
| AATATGCAGCCTCTACATTG+TGG | 0.591586 | 5.2:-48256562 | MS.gene65672:intron |
| TGCAATTCAACAAAATATCA+CGG | 0.599291 | 5.2:-48256310 | MS.gene65672:intron |
| GCTAATCGCAAATTGACGAT+AGG | 0.606094 | 5.2:+48255535 | None:intergenic |
| TGATCCAAAATACACAAGGG+TGG | 0.611055 | 5.2:-48257688 | MS.gene65672:CDS |
| TATCTCCCATAAAATGCGAA+AGG | 0.611343 | 5.2:+48256676 | None:intergenic |
| AAAATCTGCAAAGAATGACT+TGG | 0.616396 | 5.2:-48257350 | MS.gene65672:CDS |
| AGAACATACGTAATTGGGCA+CGG | 0.619499 | 5.2:+48256032 | None:intergenic |
| GTTCATGGGCAGATCATGTG+AGG | 0.620156 | 5.2:-48257318 | MS.gene65672:CDS |
| ACATCGACATTGCCAACTGT+GGG | 0.624409 | 5.2:+48255467 | None:intergenic |
| GGCTTTGTCTCGGACAAAGG+AGG | 0.625135 | 5.2:-48256541 | MS.gene65672:CDS |
| GCATATGAGGATGCATCTGA+AGG | 0.627996 | 5.2:-48255692 | MS.gene65672:CDS |
| CAGTGTCACTGCCAAAGTCG+AGG | 0.629675 | 5.2:+48256886 | None:intergenic |
| GAGACAAAGCCACAATGTAG+AGG | 0.640949 | 5.2:+48256553 | None:intergenic |
| AACATACGTAATTGGGCACG+GGG | 0.672199 | 5.2:+48256034 | None:intergenic |
| ATCATAAAACGGGAACAAAG+GGG | 0.692538 | 5.2:-48256950 | MS.gene65672:CDS |
| GTAGAAGATTGGGAGAGCTG+CGG | 0.698014 | 5.2:-48256068 | MS.gene65672:CDS |
| AATTTGCGATTAGCTCAAGG+AGG | 0.746895 | 5.2:-48255526 | MS.gene65672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATATAGAAGAAAAAA+TGG | + | chr5.2:48255995-48256014 | None:intergenic | 10.0% |
| !! | GATATAAATATATTGTTTAA+TGG | + | chr5.2:48256182-48256201 | None:intergenic | 10.0% |
| !! | GTAATAATTTCTATTATAAT+GGG | - | chr5.2:48255745-48255764 | MS.gene65672:intron | 10.0% |
| !! | TTAACTTATATGTAAATTAA+TGG | + | chr5.2:48256430-48256449 | None:intergenic | 10.0% |
| !!! | TAATGTTTTAACTTTTAAAT+AGG | - | chr5.2:48255783-48255802 | MS.gene65672:intron | 10.0% |
| !!! | TTAAATTGTATTTTATATGA+AGG | - | chr5.2:48256799-48256818 | MS.gene65672:intron | 10.0% |
| !! | AAGAAAAAAAAAACCATAAA+TGG | - | chr5.2:48257303-48257322 | MS.gene65672:CDS | 15.0% |
| !! | GGTAATAATTTCTATTATAA+TGG | - | chr5.2:48255744-48255763 | MS.gene65672:intron | 15.0% |
| !! | TTAGAACTATAGAAAATATT+TGG | - | chr5.2:48257375-48257394 | MS.gene65672:CDS | 15.0% |
| !!! | GTTATTTAATTTGAAAAGAA+AGG | + | chr5.2:48256360-48256379 | None:intergenic | 15.0% |
| !!! | TTTTCATTTCTAAATTTGAT+TGG | - | chr5.2:48255723-48255742 | MS.gene65672:CDS | 15.0% |
| !!! | TTTTGTTTTTTAAACATTCA+GGG | - | chr5.2:48256219-48256238 | MS.gene65672:intron | 15.0% |
| !!! | TTTTTTTTTTTGTTGCTTAA+GGG | - | chr5.2:48256983-48257002 | MS.gene65672:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTTGCTTA+AGG | - | chr5.2:48256982-48257001 | MS.gene65672:intron | 15.0% |
| !! | AGTAATGAAAAAATGAAAGA+TGG | - | chr5.2:48255683-48255702 | MS.gene65672:CDS | 20.0% |
| !! | ATATAGAAGAAAAAATGGAA+AGG | + | chr5.2:48255990-48256009 | None:intergenic | 20.0% |
| !! | ATCCTGTTATTAAATTTAGT+CGG | - | chr5.2:48255613-48255632 | MS.gene65672:intron | 20.0% |
| !! | CTGAATGTTTAAAAAACAAA+AGG | + | chr5.2:48256220-48256239 | None:intergenic | 20.0% |
| !!! | AAAAACAAAAGGTATTCTTT+TGG | + | chr5.2:48256209-48256228 | None:intergenic | 20.0% |
| !!! | ATCTATGTTACTTGAAAATT+TGG | - | chr5.2:48257416-48257435 | MS.gene65672:intron | 20.0% |
| !!! | CTTTTGTTTTTTAAACATTC+AGG | - | chr5.2:48256218-48256237 | MS.gene65672:intron | 20.0% |
| !!! | TATTAAATTTAGTCGGTTTT+TGG | - | chr5.2:48255620-48255639 | MS.gene65672:intron | 20.0% |
| !!! | TGTATTTTATATGAAGGTTT+GGG | - | chr5.2:48256805-48256824 | MS.gene65672:intron | 20.0% |
| !!! | TTGTATTTTATATGAAGGTT+TGG | - | chr5.2:48256804-48256823 | MS.gene65672:intron | 20.0% |
| !!! | TTTGTTTTTTAAACATTCAG+GGG | - | chr5.2:48256220-48256239 | MS.gene65672:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGCTTAAG+GGG | - | chr5.2:48256984-48257003 | MS.gene65672:intron | 20.0% |
| ! | AACCGACTAAATTTAATAAC+AGG | + | chr5.2:48255618-48255637 | None:intergenic | 25.0% |
| ! | AAGTAACATAGATAAACTCA+AGG | + | chr5.2:48257409-48257428 | None:intergenic | 25.0% |
| ! | GAATATTTCATTAGCAAAGT+AGG | + | chr5.2:48255586-48255605 | None:intergenic | 25.0% |
| ! | GATTGTATAGATCATAAAAC+GGG | - | chr5.2:48256242-48256261 | MS.gene65672:intron | 25.0% |
| ! | GGATTGTATAGATCATAAAA+CGG | - | chr5.2:48256241-48256260 | MS.gene65672:intron | 25.0% |
| ! | TGCAATTCAACAAAATATCA+CGG | - | chr5.2:48256892-48256911 | MS.gene65672:CDS | 25.0% |
| ! | TTAGAGTATATAAAATCGAG+TGG | + | chr5.2:48256464-48256483 | None:intergenic | 25.0% |
| ! | TTCTATAATAGATGAAGCAA+TGG | + | chr5.2:48256747-48256766 | None:intergenic | 25.0% |
| ! | TTTCAATAAACAGAGAGAAT+GGG | - | chr5.2:48257103-48257122 | MS.gene65672:intron | 25.0% |
| !! | TACTTGAAAATTTGGAATAC+AGG | - | chr5.2:48257424-48257443 | MS.gene65672:intron | 25.0% |
| !! | TTTTCAATAAACAGAGAGAA+TGG | - | chr5.2:48257102-48257121 | MS.gene65672:intron | 25.0% |
| !! | TTTTGATCCAAAATACACAA+GGG | - | chr5.2:48255511-48255530 | MS.gene65672:CDS | 25.0% |
| AAAAGAGAAATGAGTCATGT+TGG | + | chr5.2:48257074-48257093 | None:intergenic | 30.0% | |
| AAAATCTGCAAAGAATGACT+TGG | - | chr5.2:48255852-48255871 | MS.gene65672:intron | 30.0% | |
| AAGTTGCACATTTACTTAGA+TGG | + | chr5.2:48256616-48256635 | None:intergenic | 30.0% | |
| ATATAAAATCGAGTGGATGT+AGG | + | chr5.2:48256457-48256476 | None:intergenic | 30.0% | |
| ATGTGAGGTTTATCTATCAA+TGG | - | chr5.2:48255899-48255918 | MS.gene65672:intron | 30.0% | |
| ATTTCATTAGCAAAGTAGGA+AGG | + | chr5.2:48255582-48255601 | None:intergenic | 30.0% | |
| CAAAAGAAGGAATGAAACTA+TGG | + | chr5.2:48255496-48255515 | None:intergenic | 30.0% | |
| CAGATAGAACATACGTAATT+GGG | + | chr5.2:48257178-48257197 | None:intergenic | 30.0% | |
| CATTGTTTGTAAAATTGCTC+AGG | - | chr5.2:48255554-48255573 | MS.gene65672:CDS | 30.0% | |
| TAGCAAAGATGCTTGTAAAT+GGG | - | chr5.2:48257488-48257507 | MS.gene65672:intron | 30.0% | |
| TCAGATAGAACATACGTAAT+TGG | + | chr5.2:48257179-48257198 | None:intergenic | 30.0% | |
| TTATGTTAATGCAAACCTGA+TGG | + | chr5.2:48256553-48256572 | None:intergenic | 30.0% | |
| TTGTAAGTGCAAACATTATC+AGG | + | chr5.2:48255952-48255971 | None:intergenic | 30.0% | |
| ! | AAGTCATTCTTTGCAGATTT+TGG | + | chr5.2:48255853-48255872 | None:intergenic | 30.0% |
| ! | CTATTCCTTTCGCATTTTAT+GGG | - | chr5.2:48256521-48256540 | MS.gene65672:CDS | 30.0% |
| ! | CTGAGCAATTTTACAAACAA+TGG | + | chr5.2:48255556-48255575 | None:intergenic | 30.0% |
| ! | CTTTTGATCCAAAATACACA+AGG | - | chr5.2:48255510-48255529 | MS.gene65672:CDS | 30.0% |
| ! | TCTAACTTTTAAGCTTGCAA+TGG | + | chr5.2:48257360-48257379 | None:intergenic | 30.0% |
| ! | TCTATTCCTTTCGCATTTTA+TGG | - | chr5.2:48256520-48256539 | MS.gene65672:CDS | 30.0% |
| ! | TGATAATGTTTGCACTTACA+AGG | - | chr5.2:48255951-48255970 | MS.gene65672:intron | 30.0% |
| ! | TTTTAAACCAATGTGTGATG+TGG | - | chr5.2:48256097-48256116 | MS.gene65672:intron | 30.0% |
| !! | GTGTATTTTGGATCAAAAGA+AGG | + | chr5.2:48255509-48255528 | None:intergenic | 30.0% |
| AGATCATAAAACGGGAACAA+AGG | - | chr5.2:48256250-48256269 | MS.gene65672:intron | 35.0% | |
| ATCATAAAACGGGAACAAAG+GGG | - | chr5.2:48256252-48256271 | MS.gene65672:intron | 35.0% | |
| CAAAGGAGGCAATGAAATTA+CGG | - | chr5.2:48256675-48256694 | MS.gene65672:CDS | 35.0% | |
| CAATGGAAGCAACTATTCTT+TGG | + | chr5.2:48257343-48257362 | None:intergenic | 35.0% | |
| CAATGTGTGATGTGGAAAAT+TGG | - | chr5.2:48256105-48256124 | MS.gene65672:intron | 35.0% | |
| CGAAAGGAATAGAAGAGATT+GGG | + | chr5.2:48256513-48256532 | None:intergenic | 35.0% | |
| GATAATCTGTGGTTTGAACA+TGG | - | chr5.2:48257006-48257025 | MS.gene65672:intron | 35.0% | |
| GATCATAAAACGGGAACAAA+GGG | - | chr5.2:48256251-48256270 | MS.gene65672:intron | 35.0% | |
| GGAAATAAACCGATGAAAAC+CGG | + | chr5.2:48256052-48256071 | None:intergenic | 35.0% | |
| GGAATACAGGTACTTAACTT+TGG | - | chr5.2:48257437-48257456 | MS.gene65672:intron | 35.0% | |
| GTAGCAAAGATGCTTGTAAA+TGG | - | chr5.2:48257487-48257506 | MS.gene65672:intron | 35.0% | |
| TACCAGAGATATTATACGCA+GGG | + | chr5.2:48257034-48257053 | None:intergenic | 35.0% | |
| TATCTCCCATAAAATGCGAA+AGG | + | chr5.2:48256529-48256548 | None:intergenic | 35.0% | |
| TCATACAAAAATGTGTGACG+TGG | + | chr5.2:48256073-48256092 | None:intergenic | 35.0% | |
| TTACTTTCACATCCAATGAG+AGG | + | chr5.2:48256134-48256153 | None:intergenic | 35.0% | |
| ! | AGCAATGGATTTGACATACA+TGG | + | chr5.2:48256732-48256751 | None:intergenic | 35.0% |
| ! | CAATTTTCCACATCACACAT+TGG | + | chr5.2:48256107-48256126 | None:intergenic | 35.0% |
| ! | TTTTATGGGAGATATCCATC+AGG | - | chr5.2:48256535-48256554 | MS.gene65672:CDS | 35.0% |
| !! | ACAATAAGAGCATTCAACTG+AGG | + | chr5.2:48256382-48256401 | None:intergenic | 35.0% |
| !! | ACAGAGGATTTTGCCATTTA+TGG | + | chr5.2:48257319-48257338 | None:intergenic | 35.0% |
| !!! | AAGCACTCAAGCATGTTTTT+TGG | + | chr5.2:48256593-48256612 | None:intergenic | 35.0% |
| !!! | AGCACTCAAGCATGTTTTTT+GGG | + | chr5.2:48256592-48256611 | None:intergenic | 35.0% |
| AATATGCAGCCTCTACATTG+TGG | - | chr5.2:48256640-48256659 | MS.gene65672:intron | 40.0% | |
| ACCAGAGATATTATACGCAG+GGG | + | chr5.2:48257033-48257052 | None:intergenic | 40.0% | |
| AGAACATACGTAATTGGGCA+CGG | + | chr5.2:48257173-48257192 | None:intergenic | 40.0% | |
| ATAAACCGATGAAAACCGGA+CGG | + | chr5.2:48256048-48256067 | None:intergenic | 40.0% | |
| ATCCAAAATACACAAGGGTG+GGG | - | chr5.2:48255516-48255535 | MS.gene65672:CDS | 40.0% | |
| CTACCAGAGATATTATACGC+AGG | + | chr5.2:48257035-48257054 | None:intergenic | 40.0% | |
| GATCCAAAATACACAAGGGT+GGG | - | chr5.2:48255515-48255534 | MS.gene65672:CDS | 40.0% | |
| GCAATGAAATTACGGTTCGT+TGG | - | chr5.2:48256683-48256702 | MS.gene65672:CDS | 40.0% | |
| GCGAAAGGAATAGAAGAGAT+TGG | + | chr5.2:48256514-48256533 | None:intergenic | 40.0% | |
| GCTAATCGCAAATTGACGAT+AGG | + | chr5.2:48257670-48257689 | None:intergenic | 40.0% | |
| GGCTGATCAAGTAGAAGATT+GGG | - | chr5.2:48257124-48257143 | MS.gene65672:intron | 40.0% | |
| GGTGTATCAGCAAAGTGTAA+AGG | + | chr5.2:48255931-48255950 | None:intergenic | 40.0% | |
| TCTGAAGGTTCAGTACTTGA+TGG | - | chr5.2:48257525-48257544 | MS.gene65672:intron | 40.0% | |
| TGATCCAAAATACACAAGGG+TGG | - | chr5.2:48255514-48255533 | MS.gene65672:CDS | 40.0% | |
| TGCTTGTAAATGGGCATATG+AGG | - | chr5.2:48257497-48257516 | MS.gene65672:intron | 40.0% | |
| TGTGTGATGTGGAAAATTGG+CGG | - | chr5.2:48256108-48256127 | MS.gene65672:intron | 40.0% | |
| TTGCTTAAGGGGATAATCTG+TGG | - | chr5.2:48256995-48257014 | MS.gene65672:intron | 40.0% | |
| ! | AATTTGCGATTAGCTCAAGG+AGG | - | chr5.2:48257676-48257695 | MS.gene65672:CDS | 40.0% |
| ! | GTCAATTTGCGATTAGCTCA+AGG | - | chr5.2:48257673-48257692 | MS.gene65672:CDS | 40.0% |
| !! | GCAACTATTCTTTGGAACAG+AGG | + | chr5.2:48257335-48257354 | None:intergenic | 40.0% |
| !! | TCGTATTTTTGACCCACAGT+TGG | - | chr5.2:48257723-48257742 | MS.gene65672:CDS | 40.0% |
| !! | TCTACATTGTGGCTTTGTCT+CGG | - | chr5.2:48256651-48256670 | MS.gene65672:intron | 40.0% |
| AACATACGTAATTGGGCACG+GGG | + | chr5.2:48257171-48257190 | None:intergenic | 45.0% | |
| ACATCGACATTGCCAACTGT+GGG | + | chr5.2:48257738-48257757 | None:intergenic | 45.0% | |
| ACCCCTGCGTATAATATCTC+TGG | - | chr5.2:48257029-48257048 | MS.gene65672:intron | 45.0% | |
| ACTTGGCAAGTCAGTGTTCA+TGG | - | chr5.2:48255869-48255888 | MS.gene65672:intron | 45.0% | |
| CTTGGCAAGTCAGTGTTCAT+GGG | - | chr5.2:48255870-48255889 | MS.gene65672:intron | 45.0% | |
| GAACATACGTAATTGGGCAC+GGG | + | chr5.2:48257172-48257191 | None:intergenic | 45.0% | |
| GAGACAAAGCCACAATGTAG+AGG | + | chr5.2:48256652-48256671 | None:intergenic | 45.0% | |
| GCATATGAGGATGCATCTGA+AGG | - | chr5.2:48257510-48257529 | MS.gene65672:intron | 45.0% | |
| GGAATAGAAGAGATTGGGTG+AGG | + | chr5.2:48256508-48256527 | None:intergenic | 45.0% | |
| GGGCTGATCAAGTAGAAGAT+TGG | - | chr5.2:48257123-48257142 | MS.gene65672:intron | 45.0% | |
| TGACGATAGGAAAACGTGAC+AGG | + | chr5.2:48257657-48257676 | None:intergenic | 45.0% | |
| ! | ATGTTGGTTAGCTCAGTTGG+TGG | + | chr5.2:48257058-48257077 | None:intergenic | 45.0% |
| ! | GTCATGTTGGTTAGCTCAGT+TGG | + | chr5.2:48257061-48257080 | None:intergenic | 45.0% |
| CACATCGACATTGCCAACTG+TGG | + | chr5.2:48257739-48257758 | None:intergenic | 50.0% | |
| CCTAAGCAACACAGCTGCTA+AGG | - | chr5.2:48255810-48255829 | MS.gene65672:intron | 50.0% | |
| GAAAATTGGCGGCCTCTCAT+TGG | - | chr5.2:48256119-48256138 | MS.gene65672:intron | 50.0% | |
| GTAGAAGATTGGGAGAGCTG+CGG | - | chr5.2:48257134-48257153 | MS.gene65672:intron | 50.0% | |
| GTTCATGGGCAGATCATGTG+AGG | - | chr5.2:48255884-48255903 | MS.gene65672:intron | 50.0% | |
| TCAAGTTCGAATCCACCGTC+CGG | - | chr5.2:48256030-48256049 | MS.gene65672:intron | 50.0% | |
| ! | ATCCACCGTCCGGTTTTCAT+CGG | - | chr5.2:48256040-48256059 | MS.gene65672:intron | 50.0% |
| ! | CTCCCCACCCTTGTGTATTT+TGG | + | chr5.2:48255521-48255540 | None:intergenic | 50.0% |
| !! | AGCTCAAGGAGGTGTTCGAT+TGG | - | chr5.2:48257687-48257706 | MS.gene65672:CDS | 50.0% |
| !! | CCTTAGCAGCTGTGTTGCTT+AGG | + | chr5.2:48255813-48255832 | None:intergenic | 50.0% |
| !! | TGTGGCTTTGTCTCGGACAA+AGG | - | chr5.2:48256658-48256677 | MS.gene65672:intron | 50.0% |
| AACAAAGGGGCGATGTGTCG+TGG | - | chr5.2:48256265-48256284 | MS.gene65672:intron | 55.0% | |
| AACCGATGAAAACCGGACGG+TGG | + | chr5.2:48256045-48256064 | None:intergenic | 55.0% | |
| ACACAAGGGTGGGGAGATGA+TGG | - | chr5.2:48255525-48255544 | MS.gene65672:CDS | 55.0% | |
| ACTACCCAGCTCCTCGACTT+TGG | - | chr5.2:48256305-48256324 | MS.gene65672:intron | 55.0% | |
| ACTGCCAAAGTCGAGGAGCT+GGG | + | chr5.2:48256312-48256331 | None:intergenic | 55.0% | |
| TTGGGAGAGCTGCGGTTCTA+AGG | - | chr5.2:48257142-48257161 | MS.gene65672:intron | 55.0% | |
| ! | CAGTGTCACTGCCAAAGTCG+AGG | + | chr5.2:48256319-48256338 | None:intergenic | 55.0% |
| ! | GGCTTTGTCTCGGACAAAGG+AGG | - | chr5.2:48256661-48256680 | MS.gene65672:intron | 55.0% |
| CACTGCCAAAGTCGAGGAGC+TGG | + | chr5.2:48256313-48256332 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 48255465 | 48257759 | 48255465 | ID=MS.gene65672 |
| chr5.2 | mRNA | 48255465 | 48257759 | 48255465 | ID=MS.gene65672.t1;Parent=MS.gene65672 |
| chr5.2 | exon | 48257649 | 48257759 | 48257649 | ID=MS.gene65672.t1.exon1;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48257649 | 48257759 | 48257649 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48257245 | 48257419 | 48257245 | ID=MS.gene65672.t1.exon2;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48257245 | 48257419 | 48257245 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48256877 | 48256984 | 48256877 | ID=MS.gene65672.t1.exon3;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48256877 | 48256984 | 48256877 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48256668 | 48256723 | 48256668 | ID=MS.gene65672.t1.exon4;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48256668 | 48256723 | 48256668 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48256492 | 48256575 | 48256492 | ID=MS.gene65672.t1.exon5;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48256492 | 48256575 | 48256492 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48256311 | 48256403 | 48256311 | ID=MS.gene65672.t1.exon6;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48256311 | 48256403 | 48256311 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48256041 | 48256108 | 48256041 | ID=MS.gene65672.t1.exon7;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48256041 | 48256108 | 48256041 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48255678 | 48255751 | 48255678 | ID=MS.gene65672.t1.exon8;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48255678 | 48255751 | 48255678 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| chr5.2 | exon | 48255465 | 48255580 | 48255465 | ID=MS.gene65672.t1.exon9;Parent=MS.gene65672.t1 |
| chr5.2 | CDS | 48255465 | 48255580 | 48255465 | ID=cds.MS.gene65672.t1;Parent=MS.gene65672.t1 |
| Gene Sequence |
| Protein sequence |
