Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64615.t1 | XP_003614608.1 | 95.9 | 294 | 12 | 0 | 1 | 294 | 1 | 294 | 8.70E-166 | 592.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64615.t1 | Q9C9G4 | 59.2 | 287 | 112 | 4 | 2 | 286 | 6 | 289 | 8.1e-96 | 351.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64615.t1 | G7K0J7 | 95.9 | 294 | 12 | 0 | 1 | 294 | 1 | 294 | 6.2e-166 | 592.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050129 | MS.gene64615 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene64615 | 0.818235 | 2.18E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene64615 | 0.83994 | 1.17E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene64615 | -0.800644 | 1.31E-48 | -1.69E-46 |
| MS.gene050871 | MS.gene64615 | -0.803874 | 2.83E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene64615 | 0.841547 | 4.45E-58 | -1.69E-46 |
| MS.gene051127 | MS.gene64615 | 0.814563 | 1.45E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene64615 | 0.819123 | 1.37E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene64615 | -0.813383 | 2.63E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene64615 | -0.807096 | 5.97E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene64615 | -0.801976 | 6.98E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene64615 | 0.807423 | 5.09E-50 | -1.69E-46 |
| MS.gene053826 | MS.gene64615 | 0.888531 | 5.44E-73 | -1.69E-46 |
| MS.gene054003 | MS.gene64615 | -0.812448 | 4.22E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene64615 | -0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene64615 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene64615 | 0.801571 | 8.46E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene64615 | 0.854549 | 1.14E-61 | -1.69E-46 |
| MS.gene056311 | MS.gene64615 | 0.833441 | 5.32E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene64615 | 0.812402 | 4.32E-51 | -1.69E-46 |
| MS.gene05726 | MS.gene64615 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene64615 | 0.808822 | 2.56E-50 | -1.69E-46 |
| MS.gene058109 | MS.gene64615 | 0.827111 | 1.87E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene64615 | 0.800234 | 1.59E-48 | -1.69E-46 |
| MS.gene058157 | MS.gene64615 | -0.806006 | 1.01E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene64615 | 0.847861 | 8.85E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene64615 | 0.843701 | 1.19E-58 | -1.69E-46 |
| MS.gene058175 | MS.gene64615 | 0.844934 | 5.56E-59 | -1.69E-46 |
| MS.gene058493 | MS.gene64615 | 0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene64615 | 0.825991 | 3.47E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene64615 | -0.803081 | 4.13E-49 | -1.69E-46 |
| MS.gene060187 | MS.gene64615 | 0.815897 | 7.31E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene64615 | 0.815753 | 7.86E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene64615 | -0.811489 | 6.82E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene64615 | -0.815949 | 7.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01361 | MS.gene64615 | PPI |
| MS.gene32189 | MS.gene64615 | PPI |
| MS.gene64615 | MS.gene01769 | PPI |
| MS.gene052539 | MS.gene64615 | PPI |
| MS.gene035220 | MS.gene64615 | PPI |
| MS.gene002383 | MS.gene64615 | PPI |
| MS.gene047520 | MS.gene64615 | PPI |
| MS.gene33739 | MS.gene64615 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64615.t1 | MTR_5g056140 | 95.918 | 294 | 12 | 0 | 1 | 294 | 1 | 294 | 0.0 | 596 |
| MS.gene64615.t1 | MTR_5g056160 | 79.054 | 296 | 60 | 1 | 1 | 294 | 1 | 296 | 7.48e-180 | 498 |
| MS.gene64615.t1 | MTR_1g110510 | 67.730 | 282 | 88 | 2 | 5 | 286 | 5 | 283 | 5.22e-144 | 406 |
| MS.gene64615.t1 | MTR_1g110510 | 65.502 | 229 | 76 | 2 | 5 | 233 | 5 | 230 | 9.12e-112 | 323 |
| MS.gene64615.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 16 | 288 | 2.87e-110 | 321 |
| MS.gene64615.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 60 | 332 | 4.73e-110 | 322 |
| MS.gene64615.t1 | MTR_4g090610 | 58.029 | 274 | 110 | 3 | 20 | 289 | 105 | 377 | 8.83e-110 | 323 |
| MS.gene64615.t1 | MTR_2g012440 | 45.775 | 284 | 141 | 6 | 8 | 286 | 16 | 291 | 3.94e-86 | 260 |
| MS.gene64615.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 16 | 208 | 3.65e-74 | 228 |
| MS.gene64615.t1 | MTR_4g090610 | 57.732 | 194 | 77 | 3 | 20 | 209 | 60 | 252 | 6.40e-74 | 229 |
| MS.gene64615.t1 | MTR_2g012440 | 45.205 | 219 | 110 | 4 | 8 | 222 | 16 | 228 | 1.51e-65 | 205 |
| MS.gene64615.t1 | MTR_5g056560 | 72.000 | 125 | 35 | 0 | 132 | 256 | 35 | 159 | 5.37e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64615.t1 | AT1G68290 | 59.233 | 287 | 112 | 4 | 2 | 286 | 6 | 289 | 7.20e-124 | 355 |
| MS.gene64615.t1 | AT4G21585 | 55.160 | 281 | 119 | 4 | 11 | 286 | 12 | 290 | 5.58e-107 | 313 |
| MS.gene64615.t1 | AT4G21585 | 55.160 | 281 | 119 | 4 | 11 | 286 | 12 | 290 | 5.58e-107 | 313 |
| MS.gene64615.t1 | AT4G21585 | 51.495 | 301 | 113 | 5 | 17 | 286 | 18 | 316 | 6.85e-101 | 298 |
| MS.gene64615.t1 | AT4G21585 | 51.155 | 303 | 113 | 5 | 17 | 286 | 18 | 318 | 1.13e-100 | 298 |
| MS.gene64615.t1 | AT4G21590 | 50.000 | 290 | 132 | 4 | 11 | 293 | 9 | 292 | 7.33e-99 | 292 |
| MS.gene64615.t1 | AT4G21590 | 50.000 | 290 | 132 | 4 | 11 | 293 | 9 | 292 | 7.33e-99 | 292 |
| MS.gene64615.t1 | AT4G21600 | 47.797 | 295 | 144 | 6 | 5 | 291 | 2 | 294 | 1.36e-94 | 281 |
| MS.gene64615.t1 | AT1G11190 | 46.786 | 280 | 143 | 5 | 18 | 293 | 23 | 300 | 1.07e-88 | 267 |
| MS.gene64615.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 1.45e-71 | 221 |
| MS.gene64615.t1 | AT4G21585 | 47.755 | 245 | 95 | 5 | 17 | 230 | 18 | 260 | 1.45e-71 | 221 |
Find 56 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCCACCCTTGTGTATTT+TGG | 0.057389 | 5.3:+44854865 | None:intergenic |
| AAGTCATTCTTTGCAGATTT+TGG | 0.191644 | 5.3:+44854547 | None:intergenic |
| GTAGCAAAGATGCTTGTAAA+TGG | 0.276468 | 5.3:-44852913 | MS.gene64615:CDS |
| TTGGGAGAGTTGCGGTTCTA+AGG | 0.333307 | 5.3:-44853257 | MS.gene64615:CDS |
| TTCTAAATAAACAGAGAGAA+TGG | 0.379984 | 5.3:-44853297 | MS.gene64615:intron |
| TCAGATAGAACATACGTAAT+CGG | 0.381434 | 5.3:+44853223 | None:intergenic |
| ACTACTCAGCTCCTCGACTA+TGG | 0.388299 | 5.3:-44854098 | MS.gene64615:CDS |
| GGGCTGATCTAGTAGAAGAT+TGG | 0.391291 | 5.3:-44853276 | MS.gene64615:CDS |
| TTGTAAGTGCAAACATTATC+AGG | 0.396141 | 5.3:+44854448 | None:intergenic |
| ACTTGGCAAGTCAGTGTTCA+TGG | 0.401199 | 5.3:-44854528 | MS.gene64615:CDS |
| GATCATAAAACTGGAACAAA+GGG | 0.408172 | 5.3:-44854152 | MS.gene64615:CDS |
| CAAAAGAAGGAATGAAACTA+TGG | 0.412666 | 5.3:+44854890 | None:intergenic |
| TCTAAATAAACAGAGAGAAT+GGG | 0.424944 | 5.3:-44853296 | MS.gene64615:intron |
| GGCTGATCTAGTAGAAGATT+GGG | 0.433102 | 5.3:-44853275 | MS.gene64615:CDS |
| TGATAATGTTTGCACTTACA+AGG | 0.434514 | 5.3:-44854446 | MS.gene64615:CDS |
| GCGAAAGGAATAGAAGAGAT+TGG | 0.436694 | 5.3:+44853892 | None:intergenic |
| GATTGTATAGATCATAAAAC+TGG | 0.437632 | 5.3:-44854161 | MS.gene64615:CDS |
| CAAAGGAGGCAATGAAATTA+CGG | 0.449837 | 5.3:-44853728 | MS.gene64615:CDS |
| TCTGAAGGTTCAGTACTTGA+TGG | 0.464394 | 5.3:-44852875 | MS.gene64615:intron |
| CAGATAGAACATACGTAATC+GGG | 0.471322 | 5.3:+44853224 | None:intergenic |
| TAGCAAAGATGCTTGTAAAT+GGG | 0.476783 | 5.3:-44852912 | MS.gene64615:CDS |
| CGAAAGGAATAGAAGAGATT+GGG | 0.477879 | 5.3:+44853893 | None:intergenic |
| ACACAAGGGTGGGGAGATGA+TGG | 0.491069 | 5.3:-44854858 | MS.gene64615:CDS |
| TGTGGCTTTGTCTCGGACAA+AGG | 0.496950 | 5.3:-44853745 | MS.gene64615:CDS |
| TGCTTGTAAATGGGCATATG+AGG | 0.505629 | 5.3:-44852903 | MS.gene64615:CDS |
| CATTGTTTGTAAAATTGCTC+AGG | 0.515605 | 5.3:-44854829 | MS.gene64615:intron |
| TCTACATTGTGGCTTTGTCT+CGG | 0.516371 | 5.3:-44853752 | MS.gene64615:CDS |
| AGATCATAAAACTGGAACAA+AGG | 0.520100 | 5.3:-44854153 | MS.gene64615:CDS |
| GTCAATTTGCGATTAGCTCA+AGG | 0.525830 | 5.3:-44852728 | MS.gene64615:CDS |
| AGCTCAAGGAGGTGTTCGAT+TGG | 0.528636 | 5.3:-44852714 | MS.gene64615:CDS |
| GGAATAGAAGAGATTGGGTG+AGG | 0.528683 | 5.3:+44853898 | None:intergenic |
| GGTGTATCAGCAAAGTGTAA+AGG | 0.531752 | 5.3:+44854469 | None:intergenic |
| GATCCAAAATACACAAGGGT+GGG | 0.533922 | 5.3:-44854868 | MS.gene64615:CDS |
| TGACGATAGGAAAACGTGAC+AGG | 0.538079 | 5.3:+44852747 | None:intergenic |
| TCTAAGCAATACAGCTGCTA+AGG | 0.554375 | 5.3:-44854587 | MS.gene64615:CDS |
| AGAACATACGTAATCGGGCA+TGG | 0.560091 | 5.3:+44853229 | None:intergenic |
| ATCCAAAATACACAAGGGTG+GGG | 0.564859 | 5.3:-44854867 | MS.gene64615:CDS |
| CTTGGCAAGTCAGTGTTCAT+GGG | 0.569422 | 5.3:-44854527 | MS.gene64615:CDS |
| GCAATGAAATTACGGTTCGT+TGG | 0.576424 | 5.3:-44853720 | MS.gene64615:CDS |
| CACATCGACATTGCCAACTG+TGG | 0.579949 | 5.3:+44852665 | None:intergenic |
| AACAAAGGGGCGATGTGTCG+TGG | 0.590208 | 5.3:-44854138 | MS.gene64615:CDS |
| AATATGCAGCCTCTACATTG+TGG | 0.600252 | 5.3:-44853763 | MS.gene64615:intron |
| GCTAATCGCAAATTGACGAT+AGG | 0.606094 | 5.3:+44852734 | None:intergenic |
| TGATCCAAAATACACAAGGG+TGG | 0.611055 | 5.3:-44854869 | MS.gene64615:CDS |
| TGCAATTCAACAAAATATCA+CGG | 0.615303 | 5.3:-44853511 | MS.gene64615:intron |
| AAAATCTGCAAAGAATGACT+TGG | 0.616396 | 5.3:-44854545 | MS.gene64615:CDS |
| ACATCGACATTGCCAACTGT+GGG | 0.624409 | 5.3:+44852666 | None:intergenic |
| GGCTTTGTCTCGGACAAAGG+AGG | 0.625135 | 5.3:-44853742 | MS.gene64615:CDS |
| GTAGAAGATTGGGAGAGTTG+CGG | 0.627004 | 5.3:-44853265 | MS.gene64615:CDS |
| GCATATGAGGATGCATCTGA+AGG | 0.627996 | 5.3:-44852890 | MS.gene64615:CDS |
| TGTCTCCCATAAAATGCGAA+AGG | 0.631852 | 5.3:+44853877 | None:intergenic |
| GAGACAAAGCCACAATGTAG+AGG | 0.640949 | 5.3:+44853754 | None:intergenic |
| ATGTGAGATTTATCTATCAG+TGG | 0.644941 | 5.3:-44854498 | MS.gene64615:CDS |
| CAGTGTCACTGCCATAGTCG+AGG | 0.645608 | 5.3:+44854087 | None:intergenic |
| ATCATAAAACTGGAACAAAG+GGG | 0.707464 | 5.3:-44854151 | MS.gene64615:CDS |
| AATTTGCGATTAGCTCAAGG+AGG | 0.746895 | 5.3:-44852725 | MS.gene64615:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATAAATATATTGTTTAA+CGG | + | chr5.3:44853361-44853380 | None:intergenic | 10.0% |
| !! | TTAACTTATATGTAAATTAA+TGG | + | chr5.3:44853609-44853628 | None:intergenic | 10.0% |
| !!! | AAAAAATTTTGCTTTTAATT+AGG | - | chr5.3:44852968-44852987 | MS.gene64615:intron | 10.0% |
| !!! | TTAAATTGTATTTTATATGA+AGG | - | chr5.3:44853978-44853997 | MS.gene64615:intron | 10.0% |
| !! | AAAGAAAAAAAAAACCATAA+TGG | - | chr5.3:44854485-44854504 | MS.gene64615:CDS | 15.0% |
| !! | AAAGAATTAAAAAGAAAGAA+AGG | + | chr5.3:44854266-44854285 | None:intergenic | 15.0% |
| !! | TTAGAACTATAGAAAATATT+TGG | - | chr5.3:44854557-44854576 | MS.gene64615:CDS | 15.0% |
| !!! | AAAAACAAAAGGTATTATTT+TGG | + | chr5.3:44853388-44853407 | None:intergenic | 15.0% |
| !!! | TATTAAATTTAGTCGATTTT+TGG | - | chr5.3:44852819-44852838 | MS.gene64615:intron | 15.0% |
| !!! | TTTTCATTTCTAAATTTGAT+TGG | - | chr5.3:44852910-44852929 | MS.gene64615:CDS | 15.0% |
| !!! | TTTTGTTTTTTAAACATTCA+GGG | - | chr5.3:44853398-44853417 | MS.gene64615:intron | 15.0% |
| !! | AATCGACTAAATTTAATAAC+AGG | + | chr5.3:44852817-44852836 | None:intergenic | 20.0% |
| !! | AGTAATGAAAAAATGAAAGA+TGG | - | chr5.3:44852875-44852894 | MS.gene64615:intron | 20.0% |
| !! | ATATATAGAAGAAATGAGAA+AGG | + | chr5.3:44853175-44853194 | None:intergenic | 20.0% |
| !! | CTGAATGTTTAAAAAACAAA+AGG | + | chr5.3:44853399-44853418 | None:intergenic | 20.0% |
| !!! | ATCTATGTTACTTGAAAATT+TGG | - | chr5.3:44854598-44854617 | MS.gene64615:intron | 20.0% |
| !!! | CTTTTGTTTTTTAAACATTC+AGG | - | chr5.3:44853397-44853416 | MS.gene64615:intron | 20.0% |
| !!! | TGTATTTTATATGAAGGTTT+GGG | - | chr5.3:44853984-44854003 | MS.gene64615:intron | 20.0% |
| !!! | TTGTATTTTATATGAAGGTT+TGG | - | chr5.3:44853983-44854002 | MS.gene64615:intron | 20.0% |
| !!! | TTTGTTTTTTAAACATTCAG+GGG | - | chr5.3:44853399-44853418 | MS.gene64615:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGCTTAAG+TGG | - | chr5.3:44854165-44854184 | MS.gene64615:CDS | 20.0% |
| ! | AAGTAACATAGATAAACTCA+AGG | + | chr5.3:44854591-44854610 | None:intergenic | 25.0% |
| ! | GAATATTTCATTAGCAAAGT+AGG | + | chr5.3:44852785-44852804 | None:intergenic | 25.0% |
| ! | GATTGTATAGATCATAAAAC+TGG | - | chr5.3:44853421-44853440 | MS.gene64615:intron | 25.0% |
| ! | TCTAAATAAACAGAGAGAAT+GGG | - | chr5.3:44854286-44854305 | MS.gene64615:intron | 25.0% |
| ! | TGCAATTCAACAAAATATCA+CGG | - | chr5.3:44854071-44854090 | MS.gene64615:intron | 25.0% |
| ! | TTAGAGTATATAAAATCGAG+TGG | + | chr5.3:44853643-44853662 | None:intergenic | 25.0% |
| ! | TTCTAAATAAACAGAGAGAA+TGG | - | chr5.3:44854285-44854304 | MS.gene64615:intron | 25.0% |
| !! | TACTTGAAAATTTGGAATAC+AGG | - | chr5.3:44854606-44854625 | MS.gene64615:intron | 25.0% |
| !! | TTTTGATCCAAAATACACAA+GGG | - | chr5.3:44852710-44852729 | MS.gene64615:CDS | 25.0% |
| AAAATCTGCAAAGAATGACT+TGG | - | chr5.3:44853037-44853056 | MS.gene64615:intron | 30.0% | |
| AAGCATTCAAGCATGTTATT+TGG | + | chr5.3:44853772-44853791 | None:intergenic | 30.0% | |
| AAGTTGCACATTTACTTAGA+TGG | + | chr5.3:44853795-44853814 | None:intergenic | 30.0% | |
| AGATCATAAAACTGGAACAA+AGG | - | chr5.3:44853429-44853448 | MS.gene64615:intron | 30.0% | |
| AGCAATGAATTTGACATACA+TGG | + | chr5.3:44853911-44853930 | None:intergenic | 30.0% | |
| ATATAAAATCGAGTGGATGT+AGG | + | chr5.3:44853636-44853655 | None:intergenic | 30.0% | |
| ATCATAAAACTGGAACAAAG+GGG | - | chr5.3:44853431-44853450 | MS.gene64615:intron | 30.0% | |
| ATGTGAGATTTATCTATCAG+TGG | - | chr5.3:44853084-44853103 | MS.gene64615:intron | 30.0% | |
| ATTTCATTAGCAAAGTAGGA+AGG | + | chr5.3:44852781-44852800 | None:intergenic | 30.0% | |
| CAAAAGAAGGAATGAAACTA+TGG | + | chr5.3:44852695-44852714 | None:intergenic | 30.0% | |
| CATTGTTTGTAAAATTGCTC+AGG | - | chr5.3:44852753-44852772 | MS.gene64615:CDS | 30.0% | |
| GATCATAAAACTGGAACAAA+GGG | - | chr5.3:44853430-44853449 | MS.gene64615:intron | 30.0% | |
| TAGCAAAGATGCTTGTAAAT+GGG | - | chr5.3:44854670-44854689 | MS.gene64615:intron | 30.0% | |
| TCAGATAGAACATACGTAAT+CGG | + | chr5.3:44854362-44854381 | None:intergenic | 30.0% | |
| TTATGTTTATGCAAACCTGA+TGG | + | chr5.3:44853732-44853751 | None:intergenic | 30.0% | |
| TTGTAAGTGCAAACATTATC+AGG | + | chr5.3:44853137-44853156 | None:intergenic | 30.0% | |
| ! | AAGTCATTCTTTGCAGATTT+TGG | + | chr5.3:44853038-44853057 | None:intergenic | 30.0% |
| ! | AGCATTCAAGCATGTTATTT+GGG | + | chr5.3:44853771-44853790 | None:intergenic | 30.0% |
| ! | CTATTCCTTTCGCATTTTAT+GGG | - | chr5.3:44853700-44853719 | MS.gene64615:CDS | 30.0% |
| ! | CTGAGCAATTTTACAAACAA+TGG | + | chr5.3:44852755-44852774 | None:intergenic | 30.0% |
| ! | CTTTTGATCCAAAATACACA+AGG | - | chr5.3:44852709-44852728 | MS.gene64615:CDS | 30.0% |
| ! | TCTAACTTTTAAGCTTGCAA+TGG | + | chr5.3:44854542-44854561 | None:intergenic | 30.0% |
| ! | TCTATTCCTTTCGCATTTTA+TGG | - | chr5.3:44853699-44853718 | MS.gene64615:CDS | 30.0% |
| ! | TGATAATGTTTGCACTTACA+AGG | - | chr5.3:44853136-44853155 | MS.gene64615:intron | 30.0% |
| ! | TTTTAAACCAATGTGTGATG+TGG | - | chr5.3:44853276-44853295 | MS.gene64615:CDS | 30.0% |
| !! | GTGTATTTTGGATCAAAAGA+AGG | + | chr5.3:44852708-44852727 | None:intergenic | 30.0% |
| AAGAAAGAAAGGAGTCATGT+TGG | + | chr5.3:44854255-44854274 | None:intergenic | 35.0% | |
| ACCAGAGATATTATACGCAA+GGG | + | chr5.3:44854214-44854233 | None:intergenic | 35.0% | |
| CAAAGGAGGCAATGAAATTA+CGG | - | chr5.3:44853854-44853873 | MS.gene64615:intron | 35.0% | |
| CAATGGAAGCAACTATTCTT+TGG | + | chr5.3:44854525-44854544 | None:intergenic | 35.0% | |
| CAATGTGTGATGTGGAAAAT+TGG | - | chr5.3:44853284-44853303 | MS.gene64615:CDS | 35.0% | |
| CAGATAGAACATACGTAATC+GGG | + | chr5.3:44854361-44854380 | None:intergenic | 35.0% | |
| CGAAAGGAATAGAAGAGATT+GGG | + | chr5.3:44853692-44853711 | None:intergenic | 35.0% | |
| GATAATCTGTGGTTTGAACA+TGG | - | chr5.3:44854187-44854206 | MS.gene64615:intron | 35.0% | |
| GGAAATAAACCGATGAAAAC+CGG | + | chr5.3:44853231-44853250 | None:intergenic | 35.0% | |
| GGAATACAGGTACTTAACTT+TGG | - | chr5.3:44854619-44854638 | MS.gene64615:intron | 35.0% | |
| GTAGCAAAGATGCTTGTAAA+TGG | - | chr5.3:44854669-44854688 | MS.gene64615:intron | 35.0% | |
| TACCAGAGATATTATACGCA+AGG | + | chr5.3:44854215-44854234 | None:intergenic | 35.0% | |
| TCATACAAAAATGTGTGACG+TGG | + | chr5.3:44853252-44853271 | None:intergenic | 35.0% | |
| TTACTTTCACATCCAATGAG+AGG | + | chr5.3:44853313-44853332 | None:intergenic | 35.0% | |
| TTGCTTAAGTGGATAATCTG+TGG | - | chr5.3:44854176-44854195 | MS.gene64615:intron | 35.0% | |
| ! | AACAGAGGATTTTGCCATTA+TGG | + | chr5.3:44854502-44854521 | None:intergenic | 35.0% |
| ! | ACAATAAGAGCATACAACTG+GGG | + | chr5.3:44853561-44853580 | None:intergenic | 35.0% |
| ! | ACACAATAAGAGCATACAAC+TGG | + | chr5.3:44853563-44853582 | None:intergenic | 35.0% |
| ! | CAATTTTCCACATCACACAT+TGG | + | chr5.3:44853286-44853305 | None:intergenic | 35.0% |
| ! | CACAATAAGAGCATACAACT+GGG | + | chr5.3:44853562-44853581 | None:intergenic | 35.0% |
| AATATGCAGCCTCTACATTG+TGG | - | chr5.3:44853819-44853838 | MS.gene64615:intron | 40.0% | |
| ACCCTTGCGTATAATATCTC+TGG | - | chr5.3:44854210-44854229 | MS.gene64615:intron | 40.0% | |
| ATAAACCGATGAAAACCGGA+CGG | + | chr5.3:44853227-44853246 | None:intergenic | 40.0% | |
| ATCCAAAATACACAAGGGTG+GGG | - | chr5.3:44852715-44852734 | MS.gene64615:CDS | 40.0% | |
| GATCCAAAATACACAAGGGT+GGG | - | chr5.3:44852714-44852733 | MS.gene64615:CDS | 40.0% | |
| GCAATGAAATTACGGTTCGT+TGG | - | chr5.3:44853862-44853881 | MS.gene64615:intron | 40.0% | |
| GCGAAAGGAATAGAAGAGAT+TGG | + | chr5.3:44853693-44853712 | None:intergenic | 40.0% | |
| GCTAATCGCAAATTGACGAT+AGG | + | chr5.3:44854851-44854870 | None:intergenic | 40.0% | |
| GGCTGATCTAGTAGAAGATT+GGG | - | chr5.3:44854307-44854326 | MS.gene64615:intron | 40.0% | |
| GGTGTATCAGCAAAGTGTAA+AGG | + | chr5.3:44853116-44853135 | None:intergenic | 40.0% | |
| TCTAAGCAATACAGCTGCTA+AGG | - | chr5.3:44852995-44853014 | MS.gene64615:intron | 40.0% | |
| TCTGAAGGTTCAGTACTTGA+TGG | - | chr5.3:44854707-44854726 | MS.gene64615:intron | 40.0% | |
| TGATCCAAAATACACAAGGG+TGG | - | chr5.3:44852713-44852732 | MS.gene64615:CDS | 40.0% | |
| TGCTTGTAAATGGGCATATG+AGG | - | chr5.3:44854679-44854698 | MS.gene64615:intron | 40.0% | |
| TGTCTCCCATAAAATGCGAA+AGG | + | chr5.3:44853708-44853727 | None:intergenic | 40.0% | |
| TGTGTGATGTGGAAAATTGG+CGG | - | chr5.3:44853287-44853306 | MS.gene64615:intron | 40.0% | |
| ! | AATTTGCGATTAGCTCAAGG+AGG | - | chr5.3:44854857-44854876 | MS.gene64615:CDS | 40.0% |
| ! | GTCAATTTGCGATTAGCTCA+AGG | - | chr5.3:44854854-44854873 | MS.gene64615:CDS | 40.0% |
| ! | TTTTATGGGAGACATCCATC+AGG | - | chr5.3:44853714-44853733 | MS.gene64615:CDS | 40.0% |
| !! | GCAACTATTCTTTGGAACAG+AGG | + | chr5.3:44854517-44854536 | None:intergenic | 40.0% |
| !! | TCGTATTTTTGACCCACAGT+TGG | - | chr5.3:44854904-44854923 | MS.gene64615:CDS | 40.0% |
| !! | TCTACATTGTGGCTTTGTCT+CGG | - | chr5.3:44853830-44853849 | MS.gene64615:intron | 40.0% |
| ACATCGACATTGCCAACTGT+GGG | + | chr5.3:44854919-44854938 | None:intergenic | 45.0% | |
| ACTTGGCAAGTCAGTGTTCA+TGG | - | chr5.3:44853054-44853073 | MS.gene64615:intron | 45.0% | |
| AGAACATACGTAATCGGGCA+TGG | + | chr5.3:44854356-44854375 | None:intergenic | 45.0% | |
| CTTGGCAAGTCAGTGTTCAT+GGG | - | chr5.3:44853055-44853074 | MS.gene64615:intron | 45.0% | |
| GAGACAAAGCCACAATGTAG+AGG | + | chr5.3:44853831-44853850 | None:intergenic | 45.0% | |
| GCATATGAGGATGCATCTGA+AGG | - | chr5.3:44854692-44854711 | MS.gene64615:intron | 45.0% | |
| GGAATAGAAGAGATTGGGTG+AGG | + | chr5.3:44853687-44853706 | None:intergenic | 45.0% | |
| GGGCTGATCTAGTAGAAGAT+TGG | - | chr5.3:44854306-44854325 | MS.gene64615:intron | 45.0% | |
| GTAGAAGATTGGGAGAGTTG+CGG | - | chr5.3:44854317-44854336 | MS.gene64615:intron | 45.0% | |
| TGACGATAGGAAAACGTGAC+AGG | + | chr5.3:44854838-44854857 | None:intergenic | 45.0% | |
| ! | ATGTTGGTTAGCTCAGTTGG+TGG | + | chr5.3:44854239-44854258 | None:intergenic | 45.0% |
| ! | GTCATGTTGGTTAGCTCAGT+TGG | + | chr5.3:44854242-44854261 | None:intergenic | 45.0% |
| ACTACTCAGCTCCTCGACTA+TGG | - | chr5.3:44853484-44853503 | MS.gene64615:intron | 50.0% | |
| CACATCGACATTGCCAACTG+TGG | + | chr5.3:44854920-44854939 | None:intergenic | 50.0% | |
| GAAAATTGGCGGCCTCTCAT+TGG | - | chr5.3:44853298-44853317 | MS.gene64615:intron | 50.0% | |
| TCAAGTTCGAATCCACCGTC+CGG | - | chr5.3:44853209-44853228 | MS.gene64615:intron | 50.0% | |
| TTGGGAGAGTTGCGGTTCTA+AGG | - | chr5.3:44854325-44854344 | MS.gene64615:intron | 50.0% | |
| ! | ATCCACCGTCCGGTTTTCAT+CGG | - | chr5.3:44853219-44853238 | MS.gene64615:intron | 50.0% |
| ! | CTCCCCACCCTTGTGTATTT+TGG | + | chr5.3:44852720-44852739 | None:intergenic | 50.0% |
| !! | AGCTCAAGGAGGTGTTCGAT+TGG | - | chr5.3:44854868-44854887 | MS.gene64615:CDS | 50.0% |
| !! | TGTGGCTTTGTCTCGGACAA+AGG | - | chr5.3:44853837-44853856 | MS.gene64615:intron | 50.0% |
| AACAAAGGGGCGATGTGTCG+TGG | - | chr5.3:44853444-44853463 | MS.gene64615:intron | 55.0% | |
| AACCGATGAAAACCGGACGG+TGG | + | chr5.3:44853224-44853243 | None:intergenic | 55.0% | |
| ACACAAGGGTGGGGAGATGA+TGG | - | chr5.3:44852724-44852743 | MS.gene64615:CDS | 55.0% | |
| ! | CAGTGTCACTGCCATAGTCG+AGG | + | chr5.3:44853498-44853517 | None:intergenic | 55.0% |
| ! | GGCTTTGTCTCGGACAAAGG+AGG | - | chr5.3:44853840-44853859 | MS.gene64615:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 44852664 | 44854940 | 44852664 | ID=MS.gene64615 |
| chr5.3 | mRNA | 44852664 | 44854940 | 44852664 | ID=MS.gene64615.t1;Parent=MS.gene64615 |
| chr5.3 | exon | 44854830 | 44854940 | 44854830 | ID=MS.gene64615.t1.exon1;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44854830 | 44854940 | 44854830 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44854440 | 44854614 | 44854440 | ID=MS.gene64615.t1.exon2;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44854440 | 44854614 | 44854440 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44854078 | 44854185 | 44854078 | ID=MS.gene64615.t1.exon3;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44854078 | 44854185 | 44854078 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44853869 | 44853924 | 44853869 | ID=MS.gene64615.t1.exon4;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44853869 | 44853924 | 44853869 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44853693 | 44853776 | 44853693 | ID=MS.gene64615.t1.exon5;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44853693 | 44853776 | 44853693 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44853512 | 44853604 | 44853512 | ID=MS.gene64615.t1.exon6;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44853512 | 44853604 | 44853512 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44853238 | 44853305 | 44853238 | ID=MS.gene64615.t1.exon7;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44853238 | 44853305 | 44853238 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44852876 | 44852949 | 44852876 | ID=MS.gene64615.t1.exon8;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44852876 | 44852949 | 44852876 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| chr5.3 | exon | 44852664 | 44852779 | 44852664 | ID=MS.gene64615.t1.exon9;Parent=MS.gene64615.t1 |
| chr5.3 | CDS | 44852664 | 44852779 | 44852664 | ID=cds.MS.gene64615.t1;Parent=MS.gene64615.t1 |
| Gene Sequence |
| Protein sequence |
