Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00278.t1 | XP_013463210.1 | 98.8 | 721 | 9 | 0 | 1 | 721 | 1 | 721 | 0.00E+00 | 1392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00278.t1 | Q9ZPI5 | 78.2 | 720 | 156 | 1 | 3 | 721 | 6 | 725 | 0.0e+00 | 1134.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00278.t1 | A0A072V5C1 | 98.8 | 721 | 9 | 0 | 1 | 721 | 1 | 721 | 0.0e+00 | 1392.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene00278 | MS.gene57427 | PPI |
MS.gene95617 | MS.gene00278 | PPI |
MS.gene28100 | MS.gene00278 | PPI |
MS.gene09756 | MS.gene00278 | PPI |
MS.gene00278 | MS.gene61306 | PPI |
MS.gene015408 | MS.gene00278 | PPI |
MS.gene011553 | MS.gene00278 | PPI |
MS.gene062334 | MS.gene00278 | PPI |
MS.gene027213 | MS.gene00278 | PPI |
MS.gene00278 | MS.gene030781 | PPI |
MS.gene00278 | MS.gene059634 | PPI |
MS.gene72596 | MS.gene00278 | PPI |
MS.gene030076 | MS.gene00278 | PPI |
MS.gene00278 | MS.gene84175 | PPI |
MS.gene00278 | MS.gene71970 | PPI |
MS.gene00278 | MS.gene61340 | PPI |
MS.gene00278 | MS.gene94677 | PPI |
MS.gene00278 | MS.gene71971 | PPI |
MS.gene22026 | MS.gene00278 | PPI |
MS.gene070196 | MS.gene00278 | PPI |
MS.gene043002 | MS.gene00278 | PPI |
MS.gene038380 | MS.gene00278 | PPI |
MS.gene00278 | MS.gene017146 | PPI |
MS.gene21220 | MS.gene00278 | PPI |
MS.gene82594 | MS.gene00278 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00278.t1 | MTR_2g436300 | 98.752 | 721 | 9 | 0 | 1 | 721 | 1 | 721 | 0.0 | 1454 |
MS.gene00278.t1 | MTR_4g120130 | 82.615 | 719 | 125 | 0 | 3 | 721 | 5 | 723 | 0.0 | 1246 |
MS.gene00278.t1 | MTR_6g087670 | 58.006 | 712 | 297 | 1 | 1 | 712 | 1 | 710 | 0.0 | 849 |
MS.gene00278.t1 | MTR_0837s0020 | 32.709 | 694 | 419 | 14 | 14 | 703 | 159 | 808 | 1.17e-97 | 323 |
MS.gene00278.t1 | MTR_8g061230 | 30.142 | 282 | 190 | 5 | 308 | 585 | 4 | 282 | 2.33e-32 | 127 |
MS.gene00278.t1 | MTR_8g058775 | 30.142 | 282 | 190 | 5 | 308 | 585 | 4 | 282 | 2.33e-32 | 127 |
MS.gene00278.t1 | MTR_4g100350 | 36.082 | 194 | 119 | 4 | 10 | 200 | 48 | 239 | 6.84e-26 | 108 |
MS.gene00278.t1 | MTR_2g039260 | 72.059 | 68 | 19 | 0 | 286 | 353 | 31 | 98 | 1.76e-22 | 93.2 |
MS.gene00278.t1 | MTR_4g122220 | 32.973 | 185 | 118 | 3 | 14 | 197 | 15 | 194 | 6.94e-21 | 93.6 |
MS.gene00278.t1 | MTR_3g085700 | 30.409 | 171 | 104 | 4 | 21 | 180 | 24 | 190 | 7.53e-18 | 84.7 |
MS.gene00278.t1 | MTR_2027s0010 | 29.289 | 239 | 152 | 6 | 13 | 245 | 8 | 235 | 2.10e-17 | 82.8 |
MS.gene00278.t1 | MTR_8g010580 | 32.639 | 144 | 92 | 4 | 17 | 156 | 22 | 164 | 3.38e-11 | 65.5 |
MS.gene00278.t1 | MTR_8g010580 | 32.639 | 144 | 92 | 4 | 17 | 156 | 22 | 164 | 3.94e-11 | 65.9 |
MS.gene00278.t1 | MTR_8g010580 | 32.639 | 144 | 92 | 4 | 17 | 156 | 22 | 164 | 4.09e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00278.t1 | AT3G06860 | 78.194 | 720 | 156 | 1 | 3 | 721 | 6 | 725 | 0.0 | 1154 |
MS.gene00278.t1 | AT4G29010 | 57.283 | 714 | 304 | 1 | 8 | 721 | 9 | 721 | 0.0 | 832 |
MS.gene00278.t1 | AT3G15290 | 29.078 | 282 | 195 | 3 | 307 | 585 | 3 | 282 | 1.01e-33 | 131 |
MS.gene00278.t1 | AT4G16800 | 34.694 | 196 | 123 | 3 | 11 | 203 | 50 | 243 | 1.50e-25 | 108 |
MS.gene00278.t1 | AT3G15290 | 29.333 | 225 | 154 | 3 | 364 | 585 | 1 | 223 | 3.88e-25 | 105 |
MS.gene00278.t1 | AT5G43280 | 32.370 | 173 | 105 | 2 | 20 | 180 | 24 | 196 | 2.98e-21 | 93.6 |
MS.gene00278.t1 | AT5G43280 | 30.645 | 186 | 117 | 2 | 7 | 180 | 11 | 196 | 9.67e-21 | 93.6 |
MS.gene00278.t1 | AT4G16210 | 32.143 | 196 | 127 | 3 | 14 | 208 | 18 | 208 | 1.01e-20 | 93.2 |
MS.gene00278.t1 | AT1G60550 | 28.718 | 195 | 128 | 5 | 13 | 201 | 85 | 274 | 4.39e-13 | 71.6 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAAGCCCTCTGCCTATT+TGG | 0.200505 | 2.2:-52755116 | MS.gene00278:CDS |
TCTAGTGTTTCAGAGTTTAA+AGG | 0.200566 | 2.2:-52762676 | MS.gene00278:intron |
GAATGCCCATGGGACCTTTC+AGG | 0.208356 | 2.2:-52756329 | MS.gene00278:intron |
ATAGCAACTGCTTTAATTCT+TGG | 0.228772 | 2.2:-52757681 | MS.gene00278:CDS |
GAGAAGTCTAGGAACATTTC+TGG | 0.240635 | 2.2:-52755872 | MS.gene00278:CDS |
AGCAAAGATCTGTTGCTTTA+AGG | 0.248253 | 2.2:+52757263 | None:intergenic |
GAATGGGCTTTCCACCTTAC+AGG | 0.253342 | 2.2:-52755303 | MS.gene00278:intron |
TTAGGGGAGGTATCATATTC+TGG | 0.255795 | 2.2:-52755207 | MS.gene00278:intron |
ACTAATAATACCTGAAGAAA+TGG | 0.270028 | 2.2:+52757130 | None:intergenic |
TTCCGCTTTGATTGCCTTTG+AGG | 0.274258 | 2.2:+52760190 | None:intergenic |
TCTTGATATTTCAGCTGTTA+TGG | 0.275414 | 2.2:-52755326 | MS.gene00278:CDS |
AACATGGCTGCTTGTGTATA+TGG | 0.276426 | 2.2:+52756408 | None:intergenic |
TTGATTGACCTCGTTGGTTT+TGG | 0.289662 | 2.2:-52756227 | MS.gene00278:CDS |
AATTAAAGCAGTTGCTATTC+CGG | 0.300104 | 2.2:+52757686 | None:intergenic |
TTTACTTCTTTCAAGATAAC+AGG | 0.300630 | 2.2:+52757651 | None:intergenic |
GTAGTTGACTTGCTAGATAT+TGG | 0.301850 | 2.2:-52756501 | MS.gene00278:CDS |
TACCTTCTATAGTATTAGTT+TGG | 0.304893 | 2.2:+52761198 | None:intergenic |
GGTTCCTAGACAAGTGAAAA+AGG | 0.307004 | 2.2:-52757739 | MS.gene00278:CDS |
GATAAGGCAGTAACTAAGTT+TGG | 0.307330 | 2.2:-52756351 | MS.gene00278:CDS |
GTCAAGGCAATTGTTGTTAC+AGG | 0.310412 | 2.2:-52762621 | MS.gene00278:intron |
CTTGATATTTCAGCTGTTAT+GGG | 0.317805 | 2.2:-52755325 | MS.gene00278:CDS |
CTCTGTTAACACCTGCTTCC+AGG | 0.318195 | 2.2:+52757619 | None:intergenic |
TGCCATTGACGGCCTTGCCT+TGG | 0.319213 | 2.2:-52761072 | MS.gene00278:CDS |
GCGGAAGAAGCTCATAGTTT+GGG | 0.320841 | 2.2:-52760173 | MS.gene00278:CDS |
AATCCTTGGCGGAGGACTAA+TGG | 0.322869 | 2.2:-52757712 | MS.gene00278:CDS |
GCAGGTGTTAACAGAGTTAA+AGG | 0.324044 | 2.2:-52757612 | MS.gene00278:intron |
CTCTCAACGAGGAACATCTA+AGG | 0.329114 | 2.2:-52759739 | MS.gene00278:intron |
GCTGAATGGTCAAAACTATA+TGG | 0.329548 | 2.2:-52755145 | MS.gene00278:CDS |
GGCGAAAGGACACACTGTTT+TGG | 0.337914 | 2.2:-52764007 | MS.gene00278:CDS |
GGCACATGTTATGCCACTTC+TGG | 0.341446 | 2.2:-52756559 | MS.gene00278:CDS |
TTGTTGGAGCCCATTTCTTC+AGG | 0.348907 | 2.2:-52757140 | MS.gene00278:intron |
TGACGGCCTTGCCTTGGGTG+GGG | 0.352322 | 2.2:-52761066 | MS.gene00278:CDS |
GCCATTGACGGCCTTGCCTT+GGG | 0.357245 | 2.2:-52761071 | MS.gene00278:CDS |
CAGGAAGCTGAAGCCTTTGA+AGG | 0.361377 | 2.2:-52759807 | MS.gene00278:CDS |
GTACTGGATTTGCTGTTAAT+AGG | 0.361747 | 2.2:-52756440 | MS.gene00278:CDS |
TCCTAATCTTAAGCACCCTT+TGG | 0.362481 | 2.2:-52759970 | MS.gene00278:CDS |
TGCATTTGGCCTAATACAAA+AGG | 0.367285 | 2.2:-52761349 | MS.gene00278:CDS |
AGCGGAAGAAGCTCATAGTT+TGG | 0.367911 | 2.2:-52760174 | MS.gene00278:CDS |
ATTTAGTATTCTTTCCAATC+AGG | 0.370365 | 2.2:+52757175 | None:intergenic |
TCAATATAATTCTTCAACTC+TGG | 0.382949 | 2.2:+52755893 | None:intergenic |
GCAGTGCTCACCAACTTATC+AGG | 0.385840 | 2.2:+52760128 | None:intergenic |
TTGACGGCCTTGCCTTGGGT+GGG | 0.389024 | 2.2:-52761067 | MS.gene00278:CDS |
CAGAGACTTCCTCGTCTTGT+TGG | 0.389480 | 2.2:-52760358 | MS.gene00278:CDS |
GACGGCCTTGCCTTGGGTGG+GGG | 0.392887 | 2.2:-52761065 | MS.gene00278:CDS |
CTTCAACTTGGAGTAATTCC+TGG | 0.394485 | 2.2:-52760887 | MS.gene00278:CDS |
ATATTCTGGGCTGACTCTCT+TGG | 0.394635 | 2.2:-52755193 | MS.gene00278:CDS |
GGCAGCTCTTGCAGCCAAAT+AGG | 0.396795 | 2.2:+52755102 | None:intergenic |
ATCCTTGGCGGAGGACTAAT+GGG | 0.401282 | 2.2:-52757711 | MS.gene00278:CDS |
ATTTCAGCTGTTATGGGAAT+GGG | 0.401340 | 2.2:-52755319 | MS.gene00278:CDS |
TCCTCGCATGAACAGGTACC+TGG | 0.403270 | 2.2:-52757780 | MS.gene00278:intron |
ATTACTCCAAGTTGAAGTTC+AGG | 0.403692 | 2.2:+52760893 | None:intergenic |
CTCCAAACTAATACTATAGA+AGG | 0.406695 | 2.2:-52761200 | MS.gene00278:intron |
GGCCTAATACAAAAGGGATT+AGG | 0.408978 | 2.2:-52761342 | MS.gene00278:intron |
TTTGAAGCTTTCATAGTCAA+TGG | 0.412725 | 2.2:+52757431 | None:intergenic |
TCCCCGTGCAGGACTCTTGA+AGG | 0.425492 | 2.2:-52759910 | MS.gene00278:intron |
CTTCTTTCCTGTGGTGAATG+AGG | 0.429015 | 2.2:-52755392 | MS.gene00278:CDS |
TAATTCTTCAACTCTGGATC+AGG | 0.432685 | 2.2:+52755899 | None:intergenic |
ACAATCGACTTGAACCTGAT+TGG | 0.437666 | 2.2:-52757189 | MS.gene00278:CDS |
CTGTGGTGAATGAGGCCTGC+CGG | 0.439100 | 2.2:-52755384 | MS.gene00278:CDS |
GTGGTAGTTGGAAATTGTAC+TGG | 0.450260 | 2.2:-52756456 | MS.gene00278:CDS |
TTACAAAGCCGTGTCAAGAA+AGG | 0.454138 | 2.2:-52757504 | MS.gene00278:CDS |
ATTGACGGCCTTGCCTTGGG+TGG | 0.454639 | 2.2:-52761068 | MS.gene00278:CDS |
GGTGAGCACTGCTCGCCAAT+GGG | 0.456730 | 2.2:-52760117 | MS.gene00278:CDS |
TATTTCAGCTGTTATGGGAA+TGG | 0.457742 | 2.2:-52755320 | MS.gene00278:CDS |
AGCTGAAGCCTTTGAAGGAC+TGG | 0.459095 | 2.2:-52759802 | MS.gene00278:CDS |
CTGACAAAATAGAATCCCTT+GGG | 0.461433 | 2.2:-52760043 | MS.gene00278:CDS |
TGGTGAGCACTGCTCGCCAA+TGG | 0.462431 | 2.2:-52760118 | MS.gene00278:CDS |
CCAAAACTCAAGCGCAAAAG+CGG | 0.467436 | 2.2:-52759995 | MS.gene00278:CDS |
ACTTCCTCGTCTTGTTGGCC+TGG | 0.468372 | 2.2:-52760353 | MS.gene00278:CDS |
TTTCATGTTGCAGGGTGCCT+CGG | 0.468952 | 2.2:-52754640 | MS.gene00278:intron |
ATTGATTTGTAAGTTCGCTC+AGG | 0.469812 | 2.2:+52756164 | None:intergenic |
ATTGAACATGGAATAGTTGC+TGG | 0.470352 | 2.2:-52759933 | MS.gene00278:CDS |
AAATCTGAAGACCGGATTGT+TGG | 0.471151 | 2.2:-52757156 | MS.gene00278:CDS |
CTAATAATACCTGAAGAAAT+GGG | 0.474108 | 2.2:+52757131 | None:intergenic |
TGGTGTCTCTGTGGATCCTA+AGG | 0.475651 | 2.2:-52755852 | MS.gene00278:intron |
TATACTCAAGATTGGCTGAA+TGG | 0.476205 | 2.2:-52755159 | MS.gene00278:CDS |
CAAGTACATATACTCAAGAT+TGG | 0.477197 | 2.2:-52755167 | MS.gene00278:CDS |
CCTACGGTTGCTGCCATTGA+CGG | 0.478877 | 2.2:-52761083 | MS.gene00278:CDS |
ATAGTTGCTGGTCCCCGTGC+AGG | 0.482614 | 2.2:-52759921 | MS.gene00278:CDS |
TAGGGGAGGTATCATATTCT+GGG | 0.484793 | 2.2:-52755206 | MS.gene00278:CDS |
TGGGGTTACCGATCGTGGAT+TGG | 0.487151 | 2.2:-52757760 | MS.gene00278:CDS |
TTTAGTGTCACCTGATAAGT+TGG | 0.490385 | 2.2:-52760138 | MS.gene00278:CDS |
AGAAGTGGCATAACATGTGC+CGG | 0.490895 | 2.2:+52756561 | None:intergenic |
TGTGGTGAATGAGGCCTGCC+GGG | 0.491454 | 2.2:-52755383 | MS.gene00278:CDS |
ACCCAAGGCAAGGCCGTCAA+TGG | 0.492221 | 2.2:+52761070 | None:intergenic |
TCGTCTTGTTGGCCTGGCAA+AGG | 0.493961 | 2.2:-52760347 | MS.gene00278:CDS |
CAATCTTGAGTATATGTACT+TGG | 0.493998 | 2.2:+52755168 | None:intergenic |
GCCTGCCGGGTCCTTGATGA+AGG | 0.495917 | 2.2:-52755370 | MS.gene00278:CDS |
AGATGTGGACCTGGTTATAG+AGG | 0.496209 | 2.2:-52757409 | MS.gene00278:intron |
AGGCAAACCTAGCTGAGCAC+TGG | 0.496395 | 2.2:+52760913 | None:intergenic |
AGAATTATATTGAGAAGTCT+AGG | 0.499743 | 2.2:-52755883 | MS.gene00278:CDS |
CAAAACTCAAGCGCAAAAGC+GGG | 0.502685 | 2.2:-52759994 | MS.gene00278:CDS |
TCATCTCAAGTGCCTTTGCC+AGG | 0.502826 | 2.2:+52760335 | None:intergenic |
GGCGGAGGACTAATGGGCTC+CGG | 0.504928 | 2.2:-52757705 | MS.gene00278:CDS |
AGGAAAACTCCAGTGGTAGT+TGG | 0.505966 | 2.2:-52756468 | MS.gene00278:CDS |
GCTTGTAAAACTATCAGAAA+AGG | 0.506161 | 2.2:-52755431 | MS.gene00278:CDS |
AGAAATGGGCTCCAACAATC+CGG | 0.506846 | 2.2:+52757145 | None:intergenic |
AGATGTTTATCAAATTGATA+AGG | 0.508427 | 2.2:-52756367 | MS.gene00278:CDS |
CAAGAAAGGGCAAATGACTA+AGG | 0.511387 | 2.2:-52757490 | MS.gene00278:CDS |
ACCAAAGGGTGCTTAAGATT+AGG | 0.513289 | 2.2:+52759969 | None:intergenic |
TACAAAGCCGTGTCAAGAAA+GGG | 0.515065 | 2.2:-52757503 | MS.gene00278:CDS |
TAGATATTGGAAGGAAGATA+AGG | 0.515478 | 2.2:-52756488 | MS.gene00278:CDS |
TATCCTCTTGCATAAGTGGA+AGG | 0.518919 | 2.2:+52756138 | None:intergenic |
GCCTTCATCAAGGACCCGGC+AGG | 0.519276 | 2.2:+52755369 | None:intergenic |
GCATTTGGCCTAATACAAAA+GGG | 0.521014 | 2.2:-52761348 | MS.gene00278:CDS |
GGTTTGCCTGAACTTCAACT+TGG | 0.523751 | 2.2:-52760899 | MS.gene00278:CDS |
ACTGACAAAATAGAATCCCT+TGG | 0.524121 | 2.2:-52760044 | MS.gene00278:CDS |
GGCAAACCTAGCTGAGCACT+GGG | 0.524634 | 2.2:+52760914 | None:intergenic |
TTTGGCTGCAAGAGCTGCCA+AGG | 0.528047 | 2.2:-52755098 | MS.gene00278:CDS |
TGTATTGATGTTATTGAACA+TGG | 0.528293 | 2.2:-52759945 | MS.gene00278:CDS |
AGTTCTATTGATATCAAACC+AGG | 0.528738 | 2.2:+52761221 | None:intergenic |
ATGGATGAGACAAACCTGTA+AGG | 0.529918 | 2.2:+52755289 | None:intergenic |
GGAGTAATTCCTGGAGGTGG+AGG | 0.530967 | 2.2:-52760878 | MS.gene00278:intron |
TCCAAGTATTAATACCTGAA+AGG | 0.533618 | 2.2:+52756315 | None:intergenic |
ACATGGCTGCTTGTGTATAT+GGG | 0.533793 | 2.2:+52756409 | None:intergenic |
AATCAGGTTCAAGTCGATTG+TGG | 0.534371 | 2.2:+52757191 | None:intergenic |
TAACTGCAATGCCTTCATCA+AGG | 0.536095 | 2.2:+52755359 | None:intergenic |
TAACATCAATACAAACCAAA+GGG | 0.541855 | 2.2:+52759955 | None:intergenic |
ATATCTCTCTTGCTTCCCCA+AGG | 0.542922 | 2.2:+52760027 | None:intergenic |
CGACGCCACCAGTCCTTCAA+AGG | 0.543636 | 2.2:+52759794 | None:intergenic |
AACCTTCAAGAGTCCTGCAC+GGG | 0.552011 | 2.2:+52759908 | None:intergenic |
GGTACCTTTGAGAAGAGAGA+TGG | 0.552600 | 2.2:+52757452 | None:intergenic |
TCATCCATACCTCCACCTCC+AGG | 0.553219 | 2.2:+52760869 | None:intergenic |
ATGCAAGAGGATAAAAGAGC+AGG | 0.553470 | 2.2:-52756128 | MS.gene00278:intron |
TTTGTACGATGATAAACGTA+GGG | 0.553744 | 2.2:-52755927 | MS.gene00278:CDS |
TTGATTTGTAAGTTCGCTCA+GGG | 0.555002 | 2.2:+52756165 | None:intergenic |
TCAAAAGAGAGAGAATTGAC+AGG | 0.555071 | 2.2:+52763940 | None:intergenic |
AACTAAGTTTGGAATGCCCA+TGG | 0.555397 | 2.2:-52756340 | MS.gene00278:CDS |
CGTGGACCGTCGACGACCAT+GGG | 0.556229 | 2.2:-52760084 | MS.gene00278:CDS |
CCTCGCATGAACAGGTACCT+GGG | 0.556545 | 2.2:-52757779 | MS.gene00278:intron |
TTTACAATTGAAGACCTCAA+AGG | 0.556818 | 2.2:-52760204 | MS.gene00278:intron |
TCATTTGCCCTTTCTTGACA+CGG | 0.557977 | 2.2:+52757496 | None:intergenic |
GAAATTCTCAATAAATTGCA+TGG | 0.563315 | 2.2:+52756187 | None:intergenic |
CCGTCAATGGCAGCAACCGT+AGG | 0.563859 | 2.2:+52761083 | None:intergenic |
CTTGGAGTAATTCCTGGAGG+TGG | 0.564243 | 2.2:-52760881 | MS.gene00278:CDS |
TTGACTTGCTAGATATTGGA+AGG | 0.564548 | 2.2:-52756497 | MS.gene00278:CDS |
GCCATGTTTCTTATTGAACA+TGG | 0.566980 | 2.2:-52756393 | MS.gene00278:CDS |
TGAAGGTTGATTGACCTCGT+TGG | 0.567282 | 2.2:-52756233 | MS.gene00278:intron |
CAATGCCTTCATCAAGGACC+CGG | 0.567719 | 2.2:+52755365 | None:intergenic |
TCTTGCAGCCAAATAGGCAG+AGG | 0.568010 | 2.2:+52755108 | None:intergenic |
AGGATTGACGATGGTGATGA+TGG | 0.573322 | 2.2:+52763963 | None:intergenic |
GATCCTTCCACTTATGCAAG+AGG | 0.573838 | 2.2:-52756141 | MS.gene00278:CDS |
TCTTACCAATGGAATCCCCT+TGG | 0.578031 | 2.2:+52755081 | None:intergenic |
AGAATACTAAATCTGAAGAC+CGG | 0.579769 | 2.2:-52757164 | MS.gene00278:CDS |
CTTTGAAGGACTGGTGGCGT+CGG | 0.581262 | 2.2:-52759793 | MS.gene00278:CDS |
CATGTTGCAGGGTGCCTCGG+TGG | 0.583050 | 2.2:-52754637 | MS.gene00278:intron |
GTACAATTTCCAACTACCAC+TGG | 0.584412 | 2.2:+52756459 | None:intergenic |
AGCTGCCAAGGGGATTCCAT+TGG | 0.586048 | 2.2:-52755086 | MS.gene00278:intron |
AAGGTTGCAATCCTTGGCGG+AGG | 0.587973 | 2.2:-52757720 | MS.gene00278:CDS |
GAACATTTCTGGTGTCTCTG+TGG | 0.588565 | 2.2:-52755861 | MS.gene00278:CDS |
AGAGATGATCTTCTTTCCTG+TGG | 0.589302 | 2.2:-52755401 | MS.gene00278:CDS |
TCACAAGAGAGAAGATGTCA+AGG | 0.591944 | 2.2:-52762637 | MS.gene00278:CDS |
GTACGTACAATCTCCAGAAG+TGG | 0.593014 | 2.2:+52756546 | None:intergenic |
GAAGTGGCATAACATGTGCC+GGG | 0.593082 | 2.2:+52756562 | None:intergenic |
TATACAGGGGATACAAAGCC+TGG | 0.593274 | 2.2:-52761239 | MS.gene00278:intron |
CTATGAAAGCTTCAAAGATG+TGG | 0.593523 | 2.2:-52757424 | MS.gene00278:CDS |
TATCTCTCTTGCTTCCCCAA+GGG | 0.594221 | 2.2:+52760028 | None:intergenic |
CGGCAGGCCTCATTCACCAC+AGG | 0.595221 | 2.2:+52755385 | None:intergenic |
GTTACTGTAACAGGTGCGAA+GGG | 0.596947 | 2.2:-52761399 | MS.gene00278:intron |
AAAACCATCTCTCTTCTCAA+AGG | 0.599382 | 2.2:-52757456 | MS.gene00278:CDS |
CGGAAGAAGCTCATAGTTTG+GGG | 0.600236 | 2.2:-52760172 | MS.gene00278:CDS |
ACAGGTGAAGCAACTCGCAA+AGG | 0.600741 | 2.2:-52755956 | MS.gene00278:intron |
TCGTGGACCGTCGACGACCA+TGG | 0.603011 | 2.2:-52760085 | MS.gene00278:CDS |
ATAACATCAATACAAACCAA+AGG | 0.603172 | 2.2:+52759954 | None:intergenic |
TTAATACCTGAAAGGTCCCA+TGG | 0.604478 | 2.2:+52756323 | None:intergenic |
CCTCAAGTACCTCTATAACC+AGG | 0.604578 | 2.2:+52757400 | None:intergenic |
TGTTACTGTAACAGGTGCGA+AGG | 0.604940 | 2.2:-52761400 | MS.gene00278:intron |
TTGGCTGCAAGAGCTGCCAA+GGG | 0.609493 | 2.2:-52755097 | MS.gene00278:CDS |
TTTAGCGGGAAGGAAGCCTA+CGG | 0.609778 | 2.2:-52761099 | MS.gene00278:intron |
ATTTGTACGATGATAAACGT+AGG | 0.612093 | 2.2:-52755928 | MS.gene00278:CDS |
CCACGATATCTAGAGCCCAT+TGG | 0.614387 | 2.2:+52760102 | None:intergenic |
GATGAGACAAACCTGTAAGG+TGG | 0.615518 | 2.2:+52755292 | None:intergenic |
CTTGCAGCCAAATAGGCAGA+GGG | 0.616670 | 2.2:+52755109 | None:intergenic |
GTACCTGGGGTTACCGATCG+TGG | 0.619071 | 2.2:-52757765 | MS.gene00278:CDS |
CAAACCTAGCTGAGCACTGG+GGG | 0.619654 | 2.2:+52760916 | None:intergenic |
CCAATGGGCTCTAGATATCG+TGG | 0.621736 | 2.2:-52760102 | MS.gene00278:CDS |
ACCATGTTCAATAAGAAACA+TGG | 0.626221 | 2.2:+52756392 | None:intergenic |
TATAACAGGCATGCACTGCA+CGG | 0.626383 | 2.2:-52760946 | MS.gene00278:intron |
AAAGGCACTTGAGATGATGC+TGG | 0.627294 | 2.2:-52760329 | MS.gene00278:intron |
AAGCTTCAAAGATGTGGACC+TGG | 0.628857 | 2.2:-52757418 | MS.gene00278:CDS |
ACTAAGTTTGGAATGCCCAT+GGG | 0.629436 | 2.2:-52756339 | MS.gene00278:CDS |
AGCCCATTAGTCCTCCGCCA+AGG | 0.632377 | 2.2:+52757709 | None:intergenic |
TGAAGCCTTTGAAGGACTGG+TGG | 0.633696 | 2.2:-52759799 | MS.gene00278:CDS |
ATAACTGAATCAATGGCGAA+AGG | 0.633885 | 2.2:-52764021 | None:intergenic |
TCTAGGAACCAATCCACGAT+CGG | 0.638845 | 2.2:+52757752 | None:intergenic |
CTCGCATGAACAGGTACCTG+GGG | 0.638862 | 2.2:-52757778 | MS.gene00278:intron |
AATCCACGATCGGTAACCCC+AGG | 0.639715 | 2.2:+52757762 | None:intergenic |
TAATACCTGAAAGGTCCCAT+GGG | 0.646764 | 2.2:+52756324 | None:intergenic |
AGCAAGTCAACTACTACTTG+CGG | 0.649743 | 2.2:+52756510 | None:intergenic |
TTTGCCAGGCCAACAAGACG+AGG | 0.650048 | 2.2:+52760349 | None:intergenic |
TAGCAACCCATGGTCGTCGA+CGG | 0.652337 | 2.2:+52760078 | None:intergenic |
TTGTAAAGACTAGCAACCCA+TGG | 0.662735 | 2.2:+52760068 | None:intergenic |
CAACCTTCAAGAGTCCTGCA+CGG | 0.669633 | 2.2:+52759907 | None:intergenic |
AAAGAGAGAGAATTGACAGG+AGG | 0.669868 | 2.2:+52763943 | None:intergenic |
GACCTCAAAGGCAATCAAAG+CGG | 0.675043 | 2.2:-52760192 | MS.gene00278:CDS |
GAAGATAAGGAAAACTCCAG+TGG | 0.684571 | 2.2:-52756475 | MS.gene00278:CDS |
CAACTTGGAGTAATTCCTGG+AGG | 0.687196 | 2.2:-52760884 | MS.gene00278:CDS |
CTTGCAAGTATACAATGAGG+AGG | 0.689990 | 2.2:+52757222 | None:intergenic |
ACCTTCAAGAGTCCTGCACG+GGG | 0.690656 | 2.2:+52759909 | None:intergenic |
TGACAAAATAGAATCCCTTG+GGG | 0.709015 | 2.2:-52760042 | MS.gene00278:CDS |
ATTGACAGGAGGATTGACGA+TGG | 0.710433 | 2.2:+52763954 | None:intergenic |
TGGCTGCAAGAGCTGCCAAG+GGG | 0.712958 | 2.2:-52755096 | MS.gene00278:CDS |
TTACTTGCAAGTATACAATG+AGG | 0.724079 | 2.2:+52757219 | None:intergenic |
GCAAACCTAGCTGAGCACTG+GGG | 0.742891 | 2.2:+52760915 | None:intergenic |
TGACTGCGCTTGATCCACCG+AGG | 0.803973 | 2.2:+52754623 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 52754614 | 52764031 | 52754614 | ID=MS.gene00278 |
chr2.2 | mRNA | 52754614 | 52764031 | 52754614 | ID=MS.gene00278.t1;Parent=MS.gene00278 |
chr2.2 | exon | 52763938 | 52764031 | 52763938 | ID=MS.gene00278.t1.exon1;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52763938 | 52764031 | 52763938 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52762622 | 52762693 | 52762622 | ID=MS.gene00278.t1.exon2;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52762622 | 52762693 | 52762622 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52761343 | 52761408 | 52761343 | ID=MS.gene00278.t1.exon3;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52761343 | 52761408 | 52761343 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52761201 | 52761254 | 52761201 | ID=MS.gene00278.t1.exon4;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52761201 | 52761254 | 52761201 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52761049 | 52761116 | 52761049 | ID=MS.gene00278.t1.exon5;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52761049 | 52761116 | 52761049 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52760879 | 52760960 | 52760879 | ID=MS.gene00278.t1.exon6;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52760879 | 52760960 | 52760879 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52760330 | 52760385 | 52760330 | ID=MS.gene00278.t1.exon7;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52760330 | 52760385 | 52760330 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52759911 | 52760213 | 52759911 | ID=MS.gene00278.t1.exon8;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52759911 | 52760213 | 52759911 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52759740 | 52759826 | 52759740 | ID=MS.gene00278.t1.exon9;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52759740 | 52759826 | 52759740 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52757613 | 52757787 | 52757613 | ID=MS.gene00278.t1.exon10;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52757613 | 52757787 | 52757613 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52757410 | 52757531 | 52757410 | ID=MS.gene00278.t1.exon11;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52757410 | 52757531 | 52757410 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52757141 | 52757304 | 52757141 | ID=MS.gene00278.t1.exon12;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52757141 | 52757304 | 52757141 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52756330 | 52756584 | 52756330 | ID=MS.gene00278.t1.exon13;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52756330 | 52756584 | 52756330 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52756129 | 52756250 | 52756129 | ID=MS.gene00278.t1.exon14;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52756129 | 52756250 | 52756129 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52755853 | 52755974 | 52755853 | ID=MS.gene00278.t1.exon15;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52755853 | 52755974 | 52755853 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52755304 | 52755452 | 52755304 | ID=MS.gene00278.t1.exon16;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52755304 | 52755452 | 52755304 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52755087 | 52755225 | 52755087 | ID=MS.gene00278.t1.exon17;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52755087 | 52755225 | 52755087 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
chr2.2 | exon | 52754614 | 52754649 | 52754614 | ID=MS.gene00278.t1.exon18;Parent=MS.gene00278.t1 |
chr2.2 | CDS | 52754614 | 52754649 | 52754614 | ID=cds.MS.gene00278.t1;Parent=MS.gene00278.t1 |
Gene Sequence |
Protein sequence |