AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003918

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003918.t1 MTR_4g066210 95.484 465 10 1 21 474 63 527 0.0 920
MS.gene003918.t1 MTR_4g066240 86.026 458 53 1 21 467 56 513 0.0 815
MS.gene003918.t1 MTR_4g066240 85.839 459 53 2 21 467 56 514 0.0 810
MS.gene003918.t1 MTR_4g066340 76.782 435 90 1 44 467 6 440 0.0 698
MS.gene003918.t1 MTR_4g066580 67.826 460 137 1 21 469 59 518 0.0 676
MS.gene003918.t1 MTR_3g028720 66.304 460 144 1 21 469 58 517 0.0 667
MS.gene003918.t1 MTR_4g066630 67.473 455 137 1 21 464 59 513 0.0 664
MS.gene003918.t1 MTR_4g066590 67.033 455 139 1 21 464 53 507 0.0 662
MS.gene003918.t1 MTR_2g098790 67.615 457 137 1 21 466 58 514 0.0 660
MS.gene003918.t1 MTR_2g098520 66.302 457 143 1 21 466 54 510 0.0 657
MS.gene003918.t1 MTR_6g078450 65.577 459 147 1 21 468 56 514 0.0 654
MS.gene003918.t1 MTR_2g098540 65.864 457 145 1 21 466 51 507 0.0 651
MS.gene003918.t1 MTR_2g098540 65.368 462 149 1 16 466 2 463 0.0 650
MS.gene003918.t1 MTR_4g066240 85.014 367 44 1 21 376 56 422 0.0 647
MS.gene003918.t1 MTR_6g078330 66.083 457 144 1 21 466 57 513 0.0 643
MS.gene003918.t1 MTR_6g078380 67.615 457 136 2 21 465 56 512 0.0 634
MS.gene003918.t1 MTR_4g066640 63.399 459 153 3 21 467 59 514 0.0 624
MS.gene003918.t1 MTR_5g071520 63.305 466 151 2 21 466 59 524 0.0 602
MS.gene003918.t1 MTR_3g028720 66.667 402 123 1 21 411 58 459 0.0 586
MS.gene003918.t1 MTR_4g066630 67.332 401 120 1 21 410 59 459 0.0 585
MS.gene003918.t1 MTR_4g066330 61.438 459 138 3 21 466 61 493 0.0 582
MS.gene003918.t1 MTR_4g066280 60.349 459 143 3 21 466 61 493 0.0 576
MS.gene003918.t1 MTR_6g078330 66.015 409 128 1 69 466 1 409 0.0 575
MS.gene003918.t1 MTR_6g078450 66.418 402 124 1 21 411 56 457 0.0 573
MS.gene003918.t1 MTR_3g026280 57.768 457 177 3 21 466 42 493 0.0 558
MS.gene003918.t1 MTR_4g066580 67.568 370 109 1 21 379 59 428 0.0 544
MS.gene003918.t1 MTR_6g078330 64.484 397 128 2 81 466 15 409 0.0 540
MS.gene003918.t1 MTR_4g066630 67.302 367 109 1 21 376 59 425 0.0 538
MS.gene003918.t1 MTR_3g028720 66.848 368 111 1 21 377 58 425 0.0 537
MS.gene003918.t1 MTR_4g023000 56.236 457 183 4 21 466 44 494 0.0 529
MS.gene003918.t1 MTR_4g067040 70.213 329 98 0 21 349 54 382 0.0 511
MS.gene003918.t1 MTR_4g067040 68.824 340 105 1 21 360 54 392 1.72e-180 511
MS.gene003918.t1 MTR_3g028720 69.301 329 101 0 21 349 58 386 6.71e-180 509
MS.gene003918.t1 MTR_2g043200 56.061 462 160 5 21 466 85 519 2.00e-177 508
MS.gene003918.t1 MTR_4g015420 52.991 468 171 6 21 466 85 525 3.55e-176 504
MS.gene003918.t1 MTR_4g066630 70.440 318 94 0 21 338 59 376 4.38e-175 496
MS.gene003918.t1 MTR_3g026400 52.954 457 198 6 22 466 27 478 2.30e-172 493
MS.gene003918.t1 MTR_3g026400 52.954 457 198 6 22 466 58 509 3.18e-172 494
MS.gene003918.t1 MTR_4g015460 53.433 466 169 9 21 465 62 500 2.09e-169 487
MS.gene003918.t1 MTR_4g083000 51.572 477 210 6 4 465 32 502 2.16e-169 486
MS.gene003918.t1 MTR_3g026620 52.632 456 201 4 22 466 59 510 2.05e-166 479
MS.gene003918.t1 MTR_6g078330 67.812 320 103 0 21 340 57 376 2.66e-165 471
MS.gene003918.t1 MTR_5g044000 51.747 458 204 5 21 464 66 520 5.27e-164 473
MS.gene003918.t1 MTR_4g066640 63.746 331 116 2 21 350 59 386 3.46e-161 461
MS.gene003918.t1 MTR_0110s0040 48.140 457 217 7 22 466 64 512 1.17e-147 432
MS.gene003918.t1 MTR_0110s0030 47.702 457 219 7 22 466 64 512 3.36e-147 431
MS.gene003918.t1 MTR_4g081530 47.182 479 233 7 10 473 34 507 3.51e-147 430
MS.gene003918.t1 MTR_4g083000 51.214 412 182 4 69 465 1 408 6.95e-147 426
MS.gene003918.t1 MTR_4g131810 48.035 458 222 6 21 464 48 503 1.42e-146 429
MS.gene003918.t1 MTR_2g022760 47.948 463 225 6 21 470 56 515 1.03e-143 422
MS.gene003918.t1 MTR_7g068910 45.474 464 234 7 13 466 41 495 1.45e-141 416
MS.gene003918.t1 MTR_3g033790 45.359 474 228 8 13 471 29 486 1.34e-139 410
MS.gene003918.t1 MTR_3g033810 45.684 475 226 8 13 471 31 489 1.94e-139 410
MS.gene003918.t1 MTR_7g068910 44.304 474 235 7 13 466 41 505 2.33e-138 408
MS.gene003918.t1 MTR_4g131800 47.516 463 226 7 21 470 536 994 6.94e-138 422
MS.gene003918.t1 MTR_2g079550 45.043 464 233 7 22 470 51 507 2.80e-135 400
MS.gene003918.t1 MTR_3g026400 61.616 297 111 2 22 318 58 351 3.79e-134 392
MS.gene003918.t1 MTR_4g016920 44.662 459 237 6 22 472 48 497 2.40e-133 395
MS.gene003918.t1 MTR_7g033860 45.652 460 224 6 22 468 69 515 2.93e-133 395
MS.gene003918.t1 MTR_5g068740 44.662 459 226 8 22 467 48 491 4.58e-133 394
MS.gene003918.t1 MTR_2g079580 44.397 464 236 7 22 470 53 509 6.65e-133 394
MS.gene003918.t1 MTR_2g022710 43.355 459 243 6 21 466 55 509 3.80e-132 392
MS.gene003918.t1 MTR_1g088610 44.912 452 230 7 22 465 48 488 1.01e-128 387
MS.gene003918.t1 MTR_1g088610 40.984 122 65 2 347 467 500 615 7.57e-19 90.1
MS.gene003918.t1 MTR_0108s0030 44.321 449 232 4 22 470 24 454 1.27e-128 381
MS.gene003918.t1 MTR_7g068900 46.359 412 202 7 64 465 17 419 7.19e-122 365
MS.gene003918.t1 MTR_1g088630 42.489 466 225 9 10 467 4 434 8.00e-122 363
MS.gene003918.t1 MTR_2g022760 46.265 415 207 6 69 470 1 412 9.53e-121 359
MS.gene003918.t1 MTR_4g016920 43.689 412 216 5 69 472 1 404 5.45e-116 347
MS.gene003918.t1 MTR_7g051510 43.966 464 223 9 22 470 96 537 3.47e-114 347
MS.gene003918.t1 MTR_2g022710 42.365 406 218 5 74 466 6 408 1.53e-113 341
MS.gene003918.t1 MTR_7g051610 44.035 461 225 7 17 464 91 531 4.42e-113 344
MS.gene003918.t1 MTR_0110s0040 51.757 313 147 3 22 334 64 372 9.23e-111 333
MS.gene003918.t1 MTR_7g051650 42.105 456 232 6 22 464 96 532 1.76e-110 337
MS.gene003918.t1 MTR_2g022710 41.832 404 219 5 21 411 55 455 5.29e-109 331
MS.gene003918.t1 MTR_7g051650 41.667 456 230 6 22 464 96 528 5.55e-109 333
MS.gene003918.t1 MTR_2g079580 46.070 369 178 6 22 375 53 415 8.45e-109 329
MS.gene003918.t1 MTR_2g022710 41.832 404 219 5 21 411 55 455 9.06e-109 331
MS.gene003918.t1 MTR_2g022710 43.360 369 193 5 21 376 55 420 1.58e-106 323
MS.gene003918.t1 MTR_7g056747 44.665 403 208 4 63 464 9 397 2.81e-104 317
MS.gene003918.t1 MTR_2g022710 43.490 361 197 6 21 378 55 411 6.62e-100 306
MS.gene003918.t1 MTR_2g022710 48.505 301 152 3 21 321 55 352 1.18e-99 306
MS.gene003918.t1 MTR_1g088630 48.000 300 126 5 22 320 48 318 1.03e-93 288
MS.gene003918.t1 MTR_4g016920 51.984 252 119 1 69 320 1 250 1.00e-92 284
MS.gene003918.t1 MTR_1g088630 51.417 247 114 3 22 267 48 289 2.20e-83 259
MS.gene003918.t1 MTR_0110s0020 50.216 231 109 4 13 241 53 279 1.16e-74 237
MS.gene003918.t1 MTR_5g069350 44.048 168 52 4 315 466 48 189 4.16e-32 121
MS.gene003918.t1 MTR_4g122980 28.010 407 229 12 65 464 183 532 9.14e-30 123
MS.gene003918.t1 MTR_8g038650 45.000 100 55 0 227 326 57 156 5.37e-24 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003918.t1 AT2G44480 52.735 457 204 2 22 467 56 511 0.0 516
MS.gene003918.t1 AT2G44480 52.735 457 204 2 22 467 87 542 2.38e-180 516
MS.gene003918.t1 AT5G44640 53.173 457 197 4 22 466 52 503 1.29e-179 513
MS.gene003918.t1 AT2G25630 54.955 444 188 4 22 464 51 483 1.51e-178 509
MS.gene003918.t1 AT5G42260 53.880 451 191 4 22 460 52 497 2.51e-178 509
MS.gene003918.t1 AT2G44450 52.735 457 198 4 22 466 52 502 2.89e-178 509
MS.gene003918.t1 AT3G60130 53.070 456 197 4 22 465 51 501 3.15e-171 492
MS.gene003918.t1 AT5G24550 51.082 462 210 5 21 467 52 512 1.12e-169 488
MS.gene003918.t1 AT5G24540 51.732 462 207 6 21 467 52 512 7.77e-162 468
MS.gene003918.t1 AT3G60140 48.203 473 229 6 10 468 36 506 8.99e-160 465
MS.gene003918.t1 AT1G51470 50.219 456 206 6 22 466 66 511 5.81e-159 460
MS.gene003918.t1 AT1G47600 49.891 459 202 7 22 466 66 510 7.65e-158 457
MS.gene003918.t1 AT1G47600 49.783 460 202 7 22 466 66 511 1.44e-157 457
MS.gene003918.t1 AT1G26560 48.590 461 220 5 21 467 52 509 2.95e-157 456
MS.gene003918.t1 AT2G44470 47.558 471 231 6 10 466 39 507 6.30e-157 458
MS.gene003918.t1 AT2G44460 50.862 464 212 7 21 470 49 510 2.12e-156 456
MS.gene003918.t1 AT2G44480 51.220 410 188 2 69 467 1 409 2.70e-156 450
MS.gene003918.t1 AT5G54570 49.455 459 214 5 21 464 50 505 1.37e-153 447
MS.gene003918.t1 AT3G60130 52.970 404 184 3 63 465 40 438 2.27e-152 441
MS.gene003918.t1 AT3G60120 48.812 463 215 8 21 466 34 491 1.65e-151 442
MS.gene003918.t1 AT3G60130 51.566 415 184 4 63 465 40 449 9.06e-149 432
MS.gene003918.t1 AT5G25980 47.722 461 217 9 29 471 75 529 3.40e-148 434
MS.gene003918.t1 AT2G44490 47.505 461 225 6 21 465 34 493 8.85e-148 434
MS.gene003918.t1 AT3G18080 47.277 459 221 8 22 467 60 510 1.63e-146 429
MS.gene003918.t1 AT5G26000 48.352 455 210 8 29 464 63 511 1.64e-145 427
MS.gene003918.t1 AT2G32860 45.188 478 246 5 10 472 104 580 9.66e-145 427
MS.gene003918.t1 AT2G32860 45.283 477 246 6 10 472 104 579 1.05e-144 427
MS.gene003918.t1 AT5G36890 47.992 473 220 6 13 471 26 486 1.90e-144 422
MS.gene003918.t1 AT5G36890 47.992 473 220 6 13 471 26 486 1.92e-144 422
MS.gene003918.t1 AT1G02850 47.253 455 222 7 22 469 47 490 9.18e-142 416
MS.gene003918.t1 AT3G03640 45.455 462 235 5 21 466 54 514 2.71e-141 416
MS.gene003918.t1 AT1G61820 47.403 462 226 7 21 468 50 508 5.64e-140 412
MS.gene003918.t1 AT3G18070 44.662 459 223 10 22 466 51 492 2.96e-139 409
MS.gene003918.t1 AT3G18070 44.662 459 229 10 22 466 51 498 4.56e-138 407
MS.gene003918.t1 AT1G02850 45.378 476 219 8 22 467 47 511 3.04e-137 405
MS.gene003918.t1 AT1G75940 46.104 462 228 9 22 464 58 517 1.23e-135 402
MS.gene003918.t1 AT1G02850 45.283 477 219 9 22 467 47 512 2.28e-135 400
MS.gene003918.t1 AT3G09260 45.671 462 235 7 22 469 56 515 3.24e-135 400
MS.gene003918.t1 AT5G54570 48.905 411 192 5 69 464 1 408 4.32e-135 397
MS.gene003918.t1 AT5G24540 50.248 404 186 5 21 410 52 454 8.33e-135 397
MS.gene003918.t1 AT2G44470 47.101 414 204 5 10 410 39 450 5.94e-134 394
MS.gene003918.t1 AT1G02850 45.934 455 201 8 22 469 47 463 5.43e-132 390
MS.gene003918.t1 AT5G28510 43.710 469 239 9 22 469 60 524 2.85e-131 390
MS.gene003918.t1 AT5G54570 49.136 405 189 5 21 411 50 451 8.04e-131 386
MS.gene003918.t1 AT4G27830 42.082 461 239 8 21 468 43 488 1.10e-130 388
MS.gene003918.t1 AT1G66280 45.259 464 233 8 22 469 57 515 9.63e-130 386
MS.gene003918.t1 AT3G21370 43.777 466 233 9 22 465 54 512 9.80e-130 386
MS.gene003918.t1 AT5G25980 48.120 399 185 7 29 411 75 467 4.39e-129 382
MS.gene003918.t1 AT5G25980 48.120 399 185 7 29 411 75 467 4.39e-129 382
MS.gene003918.t1 AT1G61810 43.226 465 247 6 21 471 53 514 1.12e-128 383
MS.gene003918.t1 AT4G21760 43.400 447 241 7 21 464 74 511 1.72e-128 383
MS.gene003918.t1 AT1G52400 45.356 463 228 12 22 465 60 516 1.82e-128 383
MS.gene003918.t1 AT1G52400 45.356 463 228 12 22 465 60 516 1.82e-128 383
MS.gene003918.t1 AT1G60090 42.982 456 233 9 21 465 44 483 3.13e-128 382
MS.gene003918.t1 AT3G60140 47.781 383 185 5 10 379 36 416 4.79e-128 379
MS.gene003918.t1 AT4G22100 43.326 457 232 8 21 465 42 483 3.57e-127 379
MS.gene003918.t1 AT2G44480 57.931 290 120 2 22 311 87 374 4.02e-127 375
MS.gene003918.t1 AT1G66270 43.629 463 242 7 22 469 57 515 5.49e-127 379
MS.gene003918.t1 AT4G21760 42.451 457 241 7 21 464 74 521 1.51e-126 379
MS.gene003918.t1 AT5G26000 47.368 399 189 5 29 411 63 456 3.44e-126 375
MS.gene003918.t1 AT1G60090 42.266 459 239 10 21 465 44 490 1.16e-124 373
MS.gene003918.t1 AT1G66270 43.413 463 241 8 22 469 57 513 8.36e-124 371
MS.gene003918.t1 AT2G44450 50.140 357 160 4 122 466 1 351 9.80e-124 365
MS.gene003918.t1 AT4G27820 41.469 463 237 7 21 468 43 486 5.90e-122 365
MS.gene003918.t1 AT1G61810 43.596 445 234 6 21 451 53 494 7.91e-122 367
MS.gene003918.t1 AT1G45191 41.630 454 248 7 16 465 44 484 3.12e-120 361
MS.gene003918.t1 AT1G45191 41.522 460 246 8 16 465 44 490 2.86e-119 359
MS.gene003918.t1 AT1G45191 41.595 464 245 8 16 465 44 495 8.63e-119 358
MS.gene003918.t1 AT3G62750 40.919 457 231 9 21 464 43 473 1.06e-117 354
MS.gene003918.t1 AT3G62750 40.564 461 235 9 21 468 69 503 2.00e-117 355
MS.gene003918.t1 AT2G44470 48.538 342 168 4 10 345 39 378 6.24e-117 349
MS.gene003918.t1 AT1G45191 40.977 471 250 9 16 465 44 507 4.09e-116 352
MS.gene003918.t1 AT5G48375 40.227 440 198 5 29 457 54 439 1.29e-111 337
MS.gene003918.t1 AT4G27830 41.162 413 217 7 69 468 1 400 1.59e-111 336
MS.gene003918.t1 AT1G02850 45.692 383 174 5 22 375 47 424 2.55e-111 336
MS.gene003918.t1 AT1G61810 42.512 414 221 6 72 471 4 414 3.39e-111 335
MS.gene003918.t1 AT2G44460 48.767 365 172 6 120 470 1 364 3.73e-110 333
MS.gene003918.t1 AT3G62740 38.125 480 245 11 21 473 43 497 1.46e-109 333
MS.gene003918.t1 AT1G52400 44.717 407 201 11 22 410 60 460 6.76e-105 320
MS.gene003918.t1 AT4G27820 40.241 415 219 6 69 468 1 401 1.75e-102 313
MS.gene003918.t1 AT4G27820 40.241 415 219 6 69 468 1 401 1.75e-102 313
MS.gene003918.t1 AT1G61820 44.744 371 189 6 112 468 1 369 2.13e-100 306
MS.gene003918.t1 AT1G60270 49.147 293 142 3 21 313 44 329 5.21e-100 305
MS.gene003918.t1 AT3G62750 40.494 405 203 8 21 413 69 447 6.53e-100 308
MS.gene003918.t1 AT3G62750 39.225 413 217 8 69 468 1 392 5.32e-99 303
MS.gene003918.t1 AT3G62750 39.225 413 217 8 69 468 1 392 5.32e-99 303
MS.gene003918.t1 AT1G51490 46.939 343 161 8 13 349 30 357 1.82e-98 302
MS.gene003918.t1 AT3G18070 47.492 299 151 4 22 320 51 343 4.07e-98 300
MS.gene003918.t1 AT1G61810 42.276 369 197 5 21 375 53 419 1.91e-97 300
MS.gene003918.t1 AT2G44480 46.844 301 148 2 178 467 6 305 2.12e-94 288
MS.gene003918.t1 AT3G62740 38.916 406 207 9 21 410 43 423 1.09e-93 290
MS.gene003918.t1 AT3G62750 44.884 303 149 5 21 322 43 328 9.79e-93 286
MS.gene003918.t1 AT3G62750 44.884 303 149 5 21 322 43 328 9.79e-93 286
MS.gene003918.t1 AT1G45191 40.278 360 201 6 16 372 44 392 3.21e-92 286
MS.gene003918.t1 AT1G45191 44.590 305 161 3 16 320 44 340 3.54e-92 286
MS.gene003918.t1 AT3G62750 44.884 303 149 5 21 322 69 354 6.27e-92 286
MS.gene003918.t1 AT3G18070 43.902 328 164 7 153 466 100 421 7.13e-92 286
MS.gene003918.t1 AT3G18070 43.492 315 158 7 166 466 1 309 4.24e-86 267
MS.gene003918.t1 AT1G60270 49.383 243 120 2 71 313 3 242 2.23e-81 254
MS.gene003918.t1 AT1G61810 48.000 250 128 2 21 270 53 300 8.70e-80 251
MS.gene003918.t1 AT3G18070 41.102 236 124 4 153 375 100 333 6.89e-59 197
MS.gene003918.t1 AT3G18070 40.359 223 118 4 166 375 1 221 2.50e-53 179
MS.gene003918.t1 AT5G16580 37.762 286 154 8 147 421 27 299 1.07e-50 174
MS.gene003918.t1 AT3G06510 25.980 408 240 12 64 465 159 510 9.44e-31 125
MS.gene003918.t1 AT3G06510 25.845 414 267 12 64 465 159 544 1.52e-28 119

Find 109 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAAAGGACCAAGTATT+TGG 0.197865 4.2:+39483828 MS.gene003918:CDS
GCATCTCAATATGGTATAAT+AGG 0.209400 4.2:+39485569 MS.gene003918:CDS
ATCCGCGAGGATTAGGATTT+AGG 0.228918 4.2:+39486500 MS.gene003918:intron
GACCTTTGCTACAAGGAATT+TGG 0.235205 4.2:+39485119 MS.gene003918:CDS
AAAACAGAAGACCTGATATT+TGG 0.235314 4.2:-39485342 None:intergenic
GTAATTTACATTACCGAAAA+TGG 0.241625 4.2:+39486563 MS.gene003918:CDS
CGATTCTGTAAGTATCTAAA+AGG 0.249841 4.2:-39486724 None:intergenic
TTCGGGAACAGAACCATATT+TGG 0.289048 4.2:+39485268 MS.gene003918:CDS
AATCATAAAGGATTTGAATA+TGG 0.307459 4.2:+39484594 MS.gene003918:CDS
AAGATCCTCGGATTCTTCTT+TGG 0.311879 4.2:-39486048 None:intergenic
AACCAATGTGCCGAAAGTTT+TGG 0.341374 4.2:-39487049 None:intergenic
TGGTAGTGTGCAGCCAAATA+TGG 0.343520 4.2:-39485281 None:intergenic
CGAGGCCTCGACTTCATGTT+TGG 0.348528 4.2:+39485659 MS.gene003918:CDS
GATTCTTCAAGCGACAGTTT+TGG 0.358175 4.2:-39486701 None:intergenic
AGAAGAATCCGAGGATCTTA+AGG 0.358352 4.2:+39486052 MS.gene003918:CDS
GGACGTTCCTCAAGCCTTAG+AGG 0.360927 4.2:+39484932 MS.gene003918:CDS
TCTGGCTTCAGCTTGCGATT+TGG 0.362792 4.2:+39486986 MS.gene003918:CDS
TATGTATTTCAGGAAGATAT+TGG 0.369128 4.2:+39484571 MS.gene003918:intron
TGAAGCCAGATTCCCATTCA+TGG 0.380755 4.2:-39486973 None:intergenic
AAAATAAGAGATGGAGGTAA+TGG 0.386283 4.2:+39484446 MS.gene003918:CDS
GGAAGATATTGGAATCATAA+AGG 0.386661 4.2:+39484582 MS.gene003918:intron
AATTGCACAGGAGGTGATTC+GGG 0.389673 4.2:+39485251 MS.gene003918:CDS
ATCAGTTTGTATGGCGGGTC+TGG 0.391534 4.2:-39486147 None:intergenic
GATAAGAGAATCAGTTTGTA+TGG 0.395420 4.2:-39486156 None:intergenic
GAAACGACACCCAAAACTTT+CGG 0.397446 4.2:+39487039 MS.gene003918:CDS
TGGAAAAGGACCAAGTATTT+GGG 0.404129 4.2:+39483829 MS.gene003918:CDS
CAACCTCATCAACGAACTAT+TGG 0.405447 4.2:+39484791 MS.gene003918:CDS
GATAACCATGAATGGGAATC+TGG 0.405714 4.2:+39486968 MS.gene003918:CDS
GAATTGCACAGGAGGTGATT+CGG 0.408321 4.2:+39485250 MS.gene003918:CDS
CATCTCAATATGGTATAATA+GGG 0.411825 4.2:+39485570 MS.gene003918:CDS
AGGTGCATCAGCAGCATAAG+AGG 0.414938 4.2:-39486111 None:intergenic
TGTAGTAGTTTATTCCTTCA+CGG 0.418155 4.2:-39484767 None:intergenic
AATATGCAGGCATCTCAATA+TGG 0.419382 4.2:+39485560 MS.gene003918:intron
AAGAGGAAGAGTAATAGTTT+AGG 0.433722 4.2:-39486094 None:intergenic
AGGGAAGGTGTGAATGTAAA+GGG 0.435489 4.2:+39486923 MS.gene003918:intron
GCGATTTGGACTCGTCTTTG+TGG 0.435971 4.2:+39487000 MS.gene003918:CDS
ATTATGTTCAAGCTGCAATC+AGG 0.440754 4.2:+39486768 MS.gene003918:CDS
GATCGGAAAAGTCGCGAAGA+TGG 0.446253 4.2:-39483585 None:intergenic
TTTGCAGAAGGAAAGCTTAG+TGG 0.446993 4.2:+39484735 MS.gene003918:intron
ACTATACAAGACCAAATATC+AGG 0.449280 4.2:+39485331 MS.gene003918:CDS
TCTTCTTTCGCTTGAGAGGC+CGG 0.450631 4.2:-39485620 None:intergenic
ATCAACGAACTATTGGCTAA+TGG 0.455297 4.2:+39484798 MS.gene003918:CDS
AGCATGAATGCTTATGCATA+TGG 0.456434 4.2:+39485188 MS.gene003918:CDS
GGATTACCTTACTCTCTCAT+TGG 0.457583 4.2:+39485591 MS.gene003918:CDS
CTTTGGAGAACTTTGGTAGC+CGG 0.461441 4.2:-39486031 None:intergenic
GAAGAATCCGAGGATCTTAA+GGG 0.463005 4.2:+39486053 MS.gene003918:CDS
CACCGGGTCGATGTTCAGAT+TGG 0.463655 4.2:+39485219 MS.gene003918:CDS
ACCGTCATACTCATCCTCTA+AGG 0.470920 4.2:-39484946 None:intergenic
GATTCTTCTTTGGAGAACTT+TGG 0.475194 4.2:-39486038 None:intergenic
TGCATATGGGAAGTTTGCAC+CGG 0.482317 4.2:+39485202 MS.gene003918:CDS
TGCGATCTTTGGTTGGAAGC+CGG 0.484554 4.2:+39486012 MS.gene003918:CDS
CATCGTGATGGCAAGCCCCT+TGG 0.493086 4.2:+39486325 MS.gene003918:CDS
CAGGGAAGGTGTGAATGTAA+AGG 0.498317 4.2:+39486922 MS.gene003918:intron
CTCATACCAATGAGAGAGTA+AGG 0.499326 4.2:-39485597 None:intergenic
AACATCTTCTTTCGCTTGAG+AGG 0.502079 4.2:-39485624 None:intergenic
TTGGTGATAGAGTGAAACAT+TGG 0.506776 4.2:+39485138 MS.gene003918:CDS
AGAGAATCAGTTTGTATGGC+GGG 0.508377 4.2:-39486152 None:intergenic
CTATGCTGACCTTTGCTACA+AGG 0.508555 4.2:+39485112 MS.gene003918:CDS
CAGCAGCATGAGCAAGAAGT+TGG 0.509755 4.2:-39485301 None:intergenic
CATTGTTGGATAACCATGAA+TGG 0.514197 4.2:+39486960 MS.gene003918:CDS
TATATGGATCCAATCACAAA+AGG 0.519336 4.2:+39485972 MS.gene003918:CDS
CACCAAATTCCTTGTAGCAA+AGG 0.520911 4.2:-39485121 None:intergenic
ATTGTTGGATAACCATGAAT+GGG 0.522990 4.2:+39486961 MS.gene003918:CDS
TGGTTAAATCTGAATTGCAC+AGG 0.528273 4.2:+39485239 MS.gene003918:CDS
ACTCTCTCATTGGTATGAGC+CGG 0.532738 4.2:+39485601 MS.gene003918:CDS
TGGCAAGCCCCTTGGTCCAA+TGG 0.533454 4.2:+39486333 MS.gene003918:CDS
GCAGCATTTGAAGATGGAAA+AGG 0.538475 4.2:+39483815 MS.gene003918:CDS
AAAAGTATGCGATCTTTGGT+TGG 0.540482 4.2:+39486005 MS.gene003918:CDS
GATTCTGTAAGTATCTAAAA+GGG 0.541771 4.2:-39486723 None:intergenic
ACCCAAAACTTTCGGCACAT+TGG 0.543767 4.2:+39487047 MS.gene003918:CDS
AATATATACCATTGGACCAA+GGG 0.544956 4.2:-39486341 None:intergenic
TCGATGACAGTTCATCGTGA+TGG 0.548253 4.2:+39486313 MS.gene003918:intron
GCCTCGACTTCATGTTTGGA+TGG 0.549073 4.2:+39485663 MS.gene003918:CDS
GAAGGTGCAGCATTTGAAGA+TGG 0.552430 4.2:+39483809 MS.gene003918:CDS
GTGAAAGTATCCCAAATACT+TGG 0.559968 4.2:-39483839 None:intergenic
TAGCCAATAGTTCGTTGATG+AGG 0.565702 4.2:-39484794 None:intergenic
CGAAGATGGAGTAGTGAAGA+AGG 0.570282 4.2:-39483571 None:intergenic
AAAGGACCCCTTAAGATCCT+CGG 0.570685 4.2:-39486060 None:intergenic
CGACGCATATCATCGGTACA+AGG 0.572001 4.2:+39484481 MS.gene003918:CDS
GCATTCATGCTCACACTCCA+TGG 0.576199 4.2:-39485176 None:intergenic
GAAACAGGTCCGATTGAGAT+CGG 0.577440 4.2:-39483602 None:intergenic
CAATGGAAAAGAGTCACATA+TGG 0.580739 4.2:-39484909 None:intergenic
GTTTAGGCCAAGAAAATCAA+AGG 0.589220 4.2:-39486078 None:intergenic
TACTCATCCTCTAAGGCTTG+AGG 0.594134 4.2:-39484939 None:intergenic
TAGCCGACGACGCATATCAT+CGG 0.598194 4.2:+39484474 MS.gene003918:CDS
AAATATATACCATTGGACCA+AGG 0.598574 4.2:-39486342 None:intergenic
CTTGAACATAATAAAGATGA+CGG 0.602302 4.2:-39486757 None:intergenic
GGATTACTTTGAATGAACCA+TGG 0.603853 4.2:+39485159 MS.gene003918:CDS
AGGCTTGAGGAACGTCCCAA+TGG 0.604842 4.2:-39484926 None:intergenic
GCATGAATGCTTATGCATAT+GGG 0.610049 4.2:+39485189 MS.gene003918:CDS
AACCAATCTGAACATCGACC+CGG 0.611784 4.2:-39485221 None:intergenic
GGTGTCACTCACACAATCCG+AGG 0.616673 4.2:-39484978 None:intergenic
GCATATGGGAAGTTTGCACC+GGG 0.626791 4.2:+39485203 MS.gene003918:CDS
GCCTTAGAGGATGAGTATGA+CGG 0.628770 4.2:+39484945 MS.gene003918:CDS
GCAGAAGGAAAGCTTAGTGG+AGG 0.637778 4.2:+39484738 MS.gene003918:intron
ATATATACCATTGGACCAAG+GGG 0.639799 4.2:-39486340 None:intergenic
AGTGGAGGTGTAAACCGTGA+AGG 0.641058 4.2:+39484753 MS.gene003918:CDS
ACCATCCAAACATGAAGTCG+AGG 0.641696 4.2:-39485664 None:intergenic
GTTCTCCAAAGAAGAATCCG+AGG 0.647399 4.2:+39486043 MS.gene003918:CDS
GGTCTGGCATCACGTAAGTG+AGG 0.656924 4.2:-39486131 None:intergenic
AAGAGAATCAGTTTGTATGG+CGG 0.658985 4.2:-39486153 None:intergenic
TAGCACTCTAGACCAAGCAA+TGG 0.660595 4.2:-39484632 None:intergenic
GTGTCACTCACACAATCCGA+GGG 0.662250 4.2:-39484977 None:intergenic
TTAAATCTGAATTGCACAGG+AGG 0.663041 4.2:+39485242 MS.gene003918:CDS
GTACCGATGATATGCGTCGT+CGG 0.669538 4.2:-39484477 None:intergenic
TTTCGGTAATGTAAATTACG+GGG 0.671497 4.2:-39486559 None:intergenic
AAGAATCCGAGGATCTTAAG+GGG 0.674534 4.2:+39486054 MS.gene003918:CDS
ACTTTCACTCATGAGCACCC+AGG 0.677048 4.2:+39483854 MS.gene003918:CDS
GATGTTGATGCTGCACAACG+AGG 0.729333 4.2:+39485641 MS.gene003918:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACATACTAATATTATT+TGG - chr4.2:39483971-39483990 None:intergenic 10.0%
!!! TATTAATATCATGTTTTTTT+TGG + chr4.2:39483918-39483937 MS.gene003918:intron 10.0%
!! AATAATAGGTAAATGTAAAA+AGG - chr4.2:39486887-39486906 None:intergenic 15.0%
!! AATGATAAAATATATACCAT+TGG - chr4.2:39486352-39486371 None:intergenic 15.0%
!! AGCAATATATTATTCAAATT+CGG + chr4.2:39485369-39485388 MS.gene003918:intron 15.0%
!! TCTCATATATATTAATGATA+TGG + chr4.2:39484414-39484433 MS.gene003918:intron 15.0%
!!! ATTTCAAAATTTTGGTTATT+TGG - chr4.2:39485543-39485562 None:intergenic 15.0%
!!! TTAAAAATTTTGTAGTATGA+AGG + chr4.2:39483791-39483810 MS.gene003918:intron 15.0%
!! AATCATAAAGGATTTGAATA+TGG + chr4.2:39484594-39484613 MS.gene003918:CDS 20.0%
!! ACTATATCACAAATGTATAA+GGG - chr4.2:39484689-39484708 None:intergenic 20.0%
!! AGAAGTAATTAAAAATAACC+TGG - chr4.2:39483875-39483894 None:intergenic 20.0%
!! CTAACATTTATATCTAATCA+TGG + chr4.2:39486278-39486297 MS.gene003918:intron 20.0%
!! GAAGTAATTAAAAATAACCT+GGG - chr4.2:39483874-39483893 None:intergenic 20.0%
!! GACTGCATATAATTAAAAAA+AGG - chr4.2:39486457-39486476 None:intergenic 20.0%
!! TAAATCGTTAGATTAAGATA+GGG + chr4.2:39484021-39484040 MS.gene003918:intron 20.0%
!! TACTATATCACAAATGTATA+AGG - chr4.2:39484690-39484709 None:intergenic 20.0%
!! TTAAATCGTTAGATTAAGAT+AGG + chr4.2:39484020-39484039 MS.gene003918:intron 20.0%
!!! AATAGAGTTATTACCATTTT+CGG - chr4.2:39486579-39486598 None:intergenic 20.0%
!!! ATCTAAACTTCATTTGATTT+TGG + chr4.2:39485800-39485819 MS.gene003918:intron 20.0%
!!! ATTTTCGGTAATGTAAATTA+CGG - chr4.2:39486564-39486583 None:intergenic 20.0%
!!! CATGTTTTTTTTGGTAATAT+GGG + chr4.2:39483927-39483946 MS.gene003918:intron 20.0%
!!! GATTTGTTTATGACTATTTA+GGG + chr4.2:39485018-39485037 MS.gene003918:intron 20.0%
!!! TCATGTTTTTTTTGGTAATA+TGG + chr4.2:39483926-39483945 MS.gene003918:intron 20.0%
! AAATGTTGCACTAAATTGAA+TGG - chr4.2:39484180-39484199 None:intergenic 25.0%
! AAGTGACAAAATCAATTGAT+AGG + chr4.2:39486659-39486678 MS.gene003918:intron 25.0%
! ATAATCATTGAGAATAATGC+AGG + chr4.2:39484879-39484898 MS.gene003918:intron 25.0%
! ATAGGTAAATGTAAAAAGGA+AGG - chr4.2:39486883-39486902 None:intergenic 25.0%
! CATCTCAATATGGTATAATA+GGG + chr4.2:39485570-39485589 MS.gene003918:CDS 25.0%
! CTTGAACATAATAAAGATGA+CGG - chr4.2:39486760-39486779 None:intergenic 25.0%
! GATTCTGTAAGTATCTAAAA+GGG - chr4.2:39486726-39486745 None:intergenic 25.0%
! GTAATTTACATTACCGAAAA+TGG + chr4.2:39486563-39486582 MS.gene003918:CDS 25.0%
! TAGATTACTCTATGTATTTC+AGG + chr4.2:39484561-39484580 MS.gene003918:intron 25.0%
! TAGGTAAATGTAAAAAGGAA+GGG - chr4.2:39486882-39486901 None:intergenic 25.0%
! TATGCATAAAGGTCAATAAT+AGG - chr4.2:39486901-39486920 None:intergenic 25.0%
! TATGTATTTCAGGAAGATAT+TGG + chr4.2:39484571-39484590 MS.gene003918:intron 25.0%
! TTACAAAGATATGACTTACT+TGG - chr4.2:39484658-39484677 None:intergenic 25.0%
!! CGATTTGTTTATGACTATTT+AGG + chr4.2:39485017-39485036 MS.gene003918:intron 25.0%
!! CTTTTCCTTAATGATGTATT+TGG + chr4.2:39484260-39484279 MS.gene003918:intron 25.0%
!! TTTTCGGTAATGTAAATTAC+GGG - chr4.2:39486563-39486582 None:intergenic 25.0%
!!! ACCAAAATTTTGAAATATGC+AGG + chr4.2:39485547-39485566 MS.gene003918:intron 25.0%
!!! TACTTATTTTCATATCCATG+TGG + chr4.2:39484843-39484862 MS.gene003918:intron 25.0%
AAAACAGAAGACCTGATATT+TGG - chr4.2:39485345-39485364 None:intergenic 30.0%
AAAATAAGAGATGGAGGTAA+TGG + chr4.2:39484446-39484465 MS.gene003918:CDS 30.0%
AAATATATACCATTGGACCA+AGG - chr4.2:39486345-39486364 None:intergenic 30.0%
AAGAGGAAGAGTAATAGTTT+AGG - chr4.2:39486097-39486116 None:intergenic 30.0%
AATATATACCATTGGACCAA+GGG - chr4.2:39486344-39486363 None:intergenic 30.0%
ACTATACAAGACCAAATATC+AGG + chr4.2:39485331-39485350 MS.gene003918:CDS 30.0%
ACTTGATCTTCTGTAATAGA+AGG + chr4.2:39485430-39485449 MS.gene003918:intron 30.0%
AGCAAAAACTTATGCTATGT+TGG - chr4.2:39484346-39484365 None:intergenic 30.0%
ATATCACAAATGTATAAGGG+AGG - chr4.2:39484686-39484705 None:intergenic 30.0%
ATATTATTTGGACATGTTGC+AGG - chr4.2:39483959-39483978 None:intergenic 30.0%
ATCAATAACTAGAAGCTTAG+AGG - chr4.2:39486817-39486836 None:intergenic 30.0%
ATTGACCTTTATGCATAACA+GGG + chr4.2:39486904-39486923 MS.gene003918:intron 30.0%
ATTGTTGGATAACCATGAAT+GGG + chr4.2:39486961-39486980 MS.gene003918:CDS 30.0%
ATTTATGATTGACAACCACA+TGG - chr4.2:39484861-39484880 None:intergenic 30.0%
CGATTCTGTAAGTATCTAAA+AGG - chr4.2:39486727-39486746 None:intergenic 30.0%
CTTGATCTTCTGTAATAGAA+GGG + chr4.2:39485431-39485450 MS.gene003918:intron 30.0%
CTTGCAGAAAAAATAAGAGA+TGG + chr4.2:39484437-39484456 MS.gene003918:intron 30.0%
GATAAGAGAATCAGTTTGTA+TGG - chr4.2:39486159-39486178 None:intergenic 30.0%
GCATCTCAATATGGTATAAT+AGG + chr4.2:39485569-39485588 MS.gene003918:CDS 30.0%
GGAAGATATTGGAATCATAA+AGG + chr4.2:39484582-39484601 MS.gene003918:intron 30.0%
TATATGGATCCAATCACAAA+AGG + chr4.2:39485972-39485991 MS.gene003918:CDS 30.0%
TATTGACCTTTATGCATAAC+AGG + chr4.2:39486903-39486922 MS.gene003918:intron 30.0%
TCATTTATGCCCTAAATGAA+CGG - chr4.2:39484109-39484128 None:intergenic 30.0%
TCCTATTAACTATTTGCAGA+AGG + chr4.2:39484723-39484742 MS.gene003918:intron 30.0%
TCCTTCTGCAAATAGTTAAT+AGG - chr4.2:39484727-39484746 None:intergenic 30.0%
TGTAGTAGTTTATTCCTTCA+CGG - chr4.2:39484770-39484789 None:intergenic 30.0%
TTCCTATTACTTTGCACAAA+TGG - chr4.2:39485893-39485912 None:intergenic 30.0%
TTGCACCAAATACATCATTA+AGG - chr4.2:39484268-39484287 None:intergenic 30.0%
TTTCGGTAATGTAAATTACG+GGG - chr4.2:39486562-39486581 None:intergenic 30.0%
! AATCGCTCTAGATTGAAAAT+TGG - chr4.2:39485002-39485021 None:intergenic 30.0%
! ATATGTGACTCTTTTCCATT+GGG + chr4.2:39484911-39484930 MS.gene003918:CDS 30.0%
! ATATTTTGCATGGTCATTGT+TGG + chr4.2:39486946-39486965 MS.gene003918:CDS 30.0%
! ATGTAAAGGGATATTTTGCA+TGG + chr4.2:39486936-39486955 MS.gene003918:CDS 30.0%
! CTTATAGATTTTCCATTGCT+TGG + chr4.2:39484620-39484639 MS.gene003918:CDS 30.0%
! GCCTGCATATTTCAAAATTT+TGG - chr4.2:39485551-39485570 None:intergenic 30.0%
! TCATTTAGGGCATAAATGAA+CGG + chr4.2:39484110-39484129 MS.gene003918:intron 30.0%
!! GCTTCTAGTTATTGATTTGT+AGG + chr4.2:39486821-39486840 MS.gene003918:intron 30.0%
!! TCTCGTGTTATTTGAATTTC+AGG - chr4.2:39485411-39485430 None:intergenic 30.0%
!!! GCATTTTGCATTTTTTCTGT+AGG + chr4.2:39485949-39485968 MS.gene003918:intron 30.0%
!!! GCATTTTTTCTGTAGGTATA+TGG + chr4.2:39485956-39485975 MS.gene003918:intron 30.0%
!!! TTTCTTGGCAAGATTTTTTG+AGG - chr4.2:39487084-39487103 None:intergenic 30.0%
AAGAGAATCAGTTTGTATGG+CGG - chr4.2:39486156-39486175 None:intergenic 35.0%
AATATGCAGGCATCTCAATA+TGG + chr4.2:39485560-39485579 MS.gene003918:intron 35.0%
AATTCATGCCCGTTCATTTA+GGG + chr4.2:39484097-39484116 MS.gene003918:intron 35.0%
ACACAAAAGCTACAAATGAG+AGG - chr4.2:39486402-39486421 None:intergenic 35.0%
AGCATGAATGCTTATGCATA+TGG + chr4.2:39485188-39485207 MS.gene003918:CDS 35.0%
ATATATACCATTGGACCAAG+GGG - chr4.2:39486343-39486362 None:intergenic 35.0%
ATGGAAAAGGACCAAGTATT+TGG + chr4.2:39483828-39483847 MS.gene003918:CDS 35.0%
ATTATGTTCAAGCTGCAATC+AGG + chr4.2:39486768-39486787 MS.gene003918:CDS 35.0%
CAATGGAAAAGAGTCACATA+TGG - chr4.2:39484912-39484931 None:intergenic 35.0%
CATTGTTGGATAACCATGAA+TGG + chr4.2:39486960-39486979 MS.gene003918:CDS 35.0%
CATTTATGCCCTAAATGAAC+GGG - chr4.2:39484108-39484127 None:intergenic 35.0%
GCAGAAAAAATAAGAGATGG+AGG + chr4.2:39484440-39484459 MS.gene003918:intron 35.0%
GCATGAATGCTTATGCATAT+GGG + chr4.2:39485189-39485208 MS.gene003918:CDS 35.0%
GGATTACTTTGAATGAACCA+TGG + chr4.2:39485159-39485178 MS.gene003918:CDS 35.0%
GTTTAGGCCAAGAAAATCAA+AGG - chr4.2:39486081-39486100 None:intergenic 35.0%
TGGAAAAGGACCAAGTATTT+GGG + chr4.2:39483829-39483848 MS.gene003918:CDS 35.0%
TGGTTAAATCTGAATTGCAC+AGG + chr4.2:39485239-39485258 MS.gene003918:CDS 35.0%
TTAAACTTAGTGCAACTTGC+TGG + chr4.2:39484237-39484256 MS.gene003918:intron 35.0%
TTAAATCTGAATTGCACAGG+AGG + chr4.2:39485242-39485261 MS.gene003918:CDS 35.0%
! AAAAGTATGCGATCTTTGGT+TGG + chr4.2:39486005-39486024 MS.gene003918:CDS 35.0%
! ACCAAAGATCGCATACTTTT+TGG - chr4.2:39486005-39486024 None:intergenic 35.0%
! ATCAACGAACTATTGGCTAA+TGG + chr4.2:39484798-39484817 MS.gene003918:CDS 35.0%
! ATCTTGCAGAGACGATTTTA+GGG + chr4.2:39485088-39485107 MS.gene003918:intron 35.0%
! CATATGTGACTCTTTTCCAT+TGG + chr4.2:39484910-39484929 MS.gene003918:CDS 35.0%
! GATTCTTCTTTGGAGAACTT+TGG - chr4.2:39486041-39486060 None:intergenic 35.0%
! GGATAGTTACCTTTTGTGAT+TGG - chr4.2:39485984-39486003 None:intergenic 35.0%
! TCCAAAAAGTATGCGATCTT+TGG + chr4.2:39486001-39486020 MS.gene003918:CDS 35.0%
! TGCCATTTGTGCAAAGTAAT+AGG + chr4.2:39485888-39485907 MS.gene003918:intron 35.0%
! TTGGTGATAGAGTGAAACAT+TGG + chr4.2:39485138-39485157 MS.gene003918:CDS 35.0%
!! GTGAAAGTATCCCAAATACT+TGG - chr4.2:39483842-39483861 None:intergenic 35.0%
AACAGCTTCTTCTGCATTTC+AGG + chr4.2:39483645-39483664 MS.gene003918:intron 40.0%
AACATCTTCTTTCGCTTGAG+AGG - chr4.2:39485627-39485646 None:intergenic 40.0%
AAGAATCCGAGGATCTTAAG+GGG + chr4.2:39486054-39486073 MS.gene003918:CDS 40.0%
AAGATCCTCGGATTCTTCTT+TGG - chr4.2:39486051-39486070 None:intergenic 40.0%
ACCTTCCCTGTTATGCATAA+AGG - chr4.2:39486912-39486931 None:intergenic 40.0%
ACCTTTATGCATAACAGGGA+AGG + chr4.2:39486908-39486927 MS.gene003918:intron 40.0%
AGAAGAATCCGAGGATCTTA+AGG + chr4.2:39486052-39486071 MS.gene003918:CDS 40.0%
AGAGAATCAGTTTGTATGGC+GGG - chr4.2:39486155-39486174 None:intergenic 40.0%
AGCTCCTTTCTTTATGCTTG+TGG + chr4.2:39484141-39484160 MS.gene003918:intron 40.0%
ATATGCAGTCTGCTTCAAGT+TGG + chr4.2:39486467-39486486 MS.gene003918:intron 40.0%
CAACCTCATCAACGAACTAT+TGG + chr4.2:39484791-39484810 MS.gene003918:CDS 40.0%
CACCAAATTCCTTGTAGCAA+AGG - chr4.2:39485124-39485143 None:intergenic 40.0%
CTCATACCAATGAGAGAGTA+AGG - chr4.2:39485600-39485619 None:intergenic 40.0%
GAAACGACACCCAAAACTTT+CGG + chr4.2:39487039-39487058 MS.gene003918:CDS 40.0%
GAAGAATCCGAGGATCTTAA+GGG + chr4.2:39486053-39486072 MS.gene003918:CDS 40.0%
GAATTCATGCCCGTTCATTT+AGG + chr4.2:39484096-39484115 MS.gene003918:intron 40.0%
GACCTTTGCTACAAGGAATT+TGG + chr4.2:39485119-39485138 MS.gene003918:CDS 40.0%
GATAACCATGAATGGGAATC+TGG + chr4.2:39486968-39486987 MS.gene003918:CDS 40.0%
GATCCCACAAGCATAAAGAA+AGG - chr4.2:39484148-39484167 None:intergenic 40.0%
GCAGCATTTGAAGATGGAAA+AGG + chr4.2:39483815-39483834 MS.gene003918:CDS 40.0%
GCTCCTTTCTTTATGCTTGT+GGG + chr4.2:39484142-39484161 MS.gene003918:intron 40.0%
GGATTACCTTACTCTCTCAT+TGG + chr4.2:39485591-39485610 MS.gene003918:CDS 40.0%
TAAGTAGCTTCTGAATGCCT+TGG + chr4.2:39484316-39484335 MS.gene003918:intron 40.0%
TAGCCAATAGTTCGTTGATG+AGG - chr4.2:39484797-39484816 None:intergenic 40.0%
TATGCTATGTTGGATCTCCA+AGG - chr4.2:39484336-39484355 None:intergenic 40.0%
TCCATTCATGCTACGTAACT+AGG - chr4.2:39484392-39484411 None:intergenic 40.0%
TCTGTAATAGAAGGGCAAGT+CGG + chr4.2:39485439-39485458 MS.gene003918:intron 40.0%
TTCGGGAACAGAACCATATT+TGG + chr4.2:39485268-39485287 MS.gene003918:CDS 40.0%
TTTGCAGAAGGAAAGCTTAG+TGG + chr4.2:39484735-39484754 MS.gene003918:intron 40.0%
! AACCAATGTGCCGAAAGTTT+TGG - chr4.2:39487052-39487071 None:intergenic 40.0%
! ACCAATGTGCCGAAAGTTTT+GGG - chr4.2:39487051-39487070 None:intergenic 40.0%
! AGGGAAGGTGTGAATGTAAA+GGG + chr4.2:39486923-39486942 MS.gene003918:intron 40.0%
! GATCTTGCAGAGACGATTTT+AGG + chr4.2:39485087-39485106 MS.gene003918:intron 40.0%
! GATTCTTCAAGCGACAGTTT+TGG - chr4.2:39486704-39486723 None:intergenic 40.0%
!! AAGGGGTCCTTTGATTTTCT+TGG + chr4.2:39486071-39486090 MS.gene003918:CDS 40.0%
!! CAAGGTATGTAGTTTTGCAG+AGG + chr4.2:39484499-39484518 MS.gene003918:intron 40.0%
!!! ATGACGGTTTTTTAAGCCCT+CGG + chr4.2:39484961-39484980 MS.gene003918:CDS 40.0%
AAAGGACCCCTTAAGATCCT+CGG - chr4.2:39486063-39486082 None:intergenic 45.0%
AAATCGTCTCTGCAAGATCG+CGG - chr4.2:39485086-39485105 None:intergenic 45.0%
AACCAATCTGAACATCGACC+CGG - chr4.2:39485224-39485243 None:intergenic 45.0%
AATTGCACAGGAGGTGATTC+GGG + chr4.2:39485251-39485270 MS.gene003918:CDS 45.0%
ACCATCCAAACATGAAGTCG+AGG - chr4.2:39485667-39485686 None:intergenic 45.0%
ACCCAAAACTTTCGGCACAT+TGG + chr4.2:39487047-39487066 MS.gene003918:CDS 45.0%
ACCGTCATACTCATCCTCTA+AGG - chr4.2:39484949-39484968 None:intergenic 45.0%
ACTCTCTCATTGGTATGAGC+CGG + chr4.2:39485601-39485620 MS.gene003918:CDS 45.0%
ATCCGCGAGGATTAGGATTT+AGG + chr4.2:39486500-39486519 MS.gene003918:intron 45.0%
CGAAGATGGAGTAGTGAAGA+AGG - chr4.2:39483574-39483593 None:intergenic 45.0%
CTATGCTGACCTTTGCTACA+AGG + chr4.2:39485112-39485131 MS.gene003918:CDS 45.0%
GAAACAGGTCCGATTGAGAT+CGG - chr4.2:39483605-39483624 None:intergenic 45.0%
GAATTGCACAGGAGGTGATT+CGG + chr4.2:39485250-39485269 MS.gene003918:CDS 45.0%
GCCTAGTTACGTAGCATGAA+TGG + chr4.2:39484388-39484407 MS.gene003918:intron 45.0%
GCCTTAGAGGATGAGTATGA+CGG + chr4.2:39484945-39484964 MS.gene003918:CDS 45.0%
GGCATAAATGAACGGACATG+TGG + chr4.2:39484118-39484137 MS.gene003918:intron 45.0%
GTCCTAAATCCTAATCCTCG+CGG - chr4.2:39486505-39486524 None:intergenic 45.0%
GTTCTCCAAAGAAGAATCCG+AGG + chr4.2:39486043-39486062 MS.gene003918:CDS 45.0%
TAGCACTCTAGACCAAGCAA+TGG - chr4.2:39484635-39484654 None:intergenic 45.0%
TCGATGACAGTTCATCGTGA+TGG + chr4.2:39486313-39486332 MS.gene003918:intron 45.0%
TGAAGCCAGATTCCCATTCA+TGG - chr4.2:39486976-39486995 None:intergenic 45.0%
TGCATATGGGAAGTTTGCAC+CGG + chr4.2:39485202-39485221 MS.gene003918:CDS 45.0%
TGCATTTATCCGCGAGGATT+AGG + chr4.2:39486493-39486512 MS.gene003918:intron 45.0%
TGGTTATGCATTTATCCGCG+AGG + chr4.2:39486487-39486506 MS.gene003918:intron 45.0%
! CAGGGAAGGTGTGAATGTAA+AGG + chr4.2:39486922-39486941 MS.gene003918:intron 45.0%
! CTTTGGAGAACTTTGGTAGC+CGG - chr4.2:39486034-39486053 None:intergenic 45.0%
! GAAGGTGCAGCATTTGAAGA+TGG + chr4.2:39483809-39483828 MS.gene003918:CDS 45.0%
! GCGACTTTTCCGATCTCAAT+CGG + chr4.2:39483593-39483612 MS.gene003918:CDS 45.0%
! GCTTTACGATGCAAGTTGGA+CGG - chr4.2:39484066-39484085 None:intergenic 45.0%
! TGGTAGTGTGCAGCCAAATA+TGG - chr4.2:39485284-39485303 None:intergenic 45.0%
!! GTTGGCTTTACGATGCAAGT+TGG - chr4.2:39484070-39484089 None:intergenic 45.0%
!! TACTCATCCTCTAAGGCTTG+AGG - chr4.2:39484942-39484961 None:intergenic 45.0%
!!! AATTTTTTTTTTTTTTGAAA+AGG - chr4.2:39484204-39484223 None:intergenic 5.0%
!!! ATATTTTAGAAATAATATTT+TGG - chr4.2:39486426-39486445 None:intergenic 5.0%
ACTTTCACTCATGAGCACCC+AGG + chr4.2:39483854-39483873 MS.gene003918:CDS 50.0%
AGGTGCATCAGCAGCATAAG+AGG - chr4.2:39486114-39486133 None:intergenic 50.0%
CAGCAGCATGAGCAAGAAGT+TGG - chr4.2:39485304-39485323 None:intergenic 50.0%
CGACGCATATCATCGGTACA+AGG + chr4.2:39484481-39484500 MS.gene003918:CDS 50.0%
GATCGGAAAAGTCGCGAAGA+TGG - chr4.2:39483588-39483607 None:intergenic 50.0%
GATGTTGATGCTGCACAACG+AGG + chr4.2:39485641-39485660 MS.gene003918:CDS 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG + chr4.2:39484738-39484757 MS.gene003918:intron 50.0%
GCATATGGGAAGTTTGCACC+GGG + chr4.2:39485203-39485222 MS.gene003918:CDS 50.0%
GCATTCATGCTCACACTCCA+TGG - chr4.2:39485179-39485198 None:intergenic 50.0%
GCCTCGACTTCATGTTTGGA+TGG + chr4.2:39485663-39485682 MS.gene003918:CDS 50.0%
GCTGTTCCGAAAACAAAGCC+TGG - chr4.2:39483631-39483650 None:intergenic 50.0%
GGGCATGAATTCGCTACAGT+TGG - chr4.2:39484088-39484107 None:intergenic 50.0%
GTTCCGAAAACAAAGCCTGG+CGG - chr4.2:39483628-39483647 None:intergenic 50.0%
TAGCCGACGACGCATATCAT+CGG + chr4.2:39484474-39484493 MS.gene003918:CDS 50.0%
TCTTCTTTCGCTTGAGAGGC+CGG - chr4.2:39485623-39485642 None:intergenic 50.0%
TGCGATCTTTGGTTGGAAGC+CGG + chr4.2:39486012-39486031 MS.gene003918:CDS 50.0%
TTCCGAAAACAAAGCCTGGC+GGG - chr4.2:39483627-39483646 None:intergenic 50.0%
! AGTGGAGGTGTAAACCGTGA+AGG + chr4.2:39484753-39484772 MS.gene003918:CDS 50.0%
! GCGATTTGGACTCGTCTTTG+TGG + chr4.2:39487000-39487019 MS.gene003918:CDS 50.0%
! GTACCGATGATATGCGTCGT+CGG - chr4.2:39484480-39484499 None:intergenic 50.0%
! GTGTCACTCACACAATCCGA+GGG - chr4.2:39484980-39484999 None:intergenic 50.0%
! TCTGGCTTCAGCTTGCGATT+TGG + chr4.2:39486986-39487005 MS.gene003918:CDS 50.0%
!! ATCAGTTTGTATGGCGGGTC+TGG - chr4.2:39486150-39486169 None:intergenic 50.0%
!!! TTCCCGCCAGGCTTTGTTTT+CGG + chr4.2:39483622-39483641 MS.gene003918:intron 50.0%
AACAAAGCCTGGCGGGAAAC+AGG - chr4.2:39483620-39483639 None:intergenic 55.0%
AGGCTTGAGGAACGTCCCAA+TGG - chr4.2:39484929-39484948 None:intergenic 55.0%
CACCGGGTCGATGTTCAGAT+TGG + chr4.2:39485219-39485238 MS.gene003918:CDS 55.0%
CGAGGCCTCGACTTCATGTT+TGG + chr4.2:39485659-39485678 MS.gene003918:CDS 55.0%
GGACGTTCCTCAAGCCTTAG+AGG + chr4.2:39484932-39484951 MS.gene003918:CDS 55.0%
GGTCTGGCATCACGTAAGTG+AGG - chr4.2:39486134-39486153 None:intergenic 55.0%
!! GGTGTCACTCACACAATCCG+AGG - chr4.2:39484981-39485000 None:intergenic 55.0%
AATCGGACCTGTTTCCCGCC+AGG + chr4.2:39483610-39483629 MS.gene003918:intron 60.0%
CATCGTGATGGCAAGCCCCT+TGG + chr4.2:39486325-39486344 MS.gene003918:CDS 60.0%
TGGCAAGCCCCTTGGTCCAA+TGG + chr4.2:39486333-39486352 MS.gene003918:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 39483560 39487117 39483560 ID=MS.gene003918
chr4.2 mRNA 39483560 39487117 39483560 ID=MS.gene003918.t1;Parent=MS.gene003918
chr4.2 exon 39483560 39483619 39483560 ID=MS.gene003918.t1.exon1;Parent=MS.gene003918.t1
chr4.2 CDS 39483560 39483619 39483560 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39483806 39483875 39483806 ID=MS.gene003918.t1.exon2;Parent=MS.gene003918.t1
chr4.2 CDS 39483806 39483875 39483806 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39484444 39484502 39484444 ID=MS.gene003918.t1.exon3;Parent=MS.gene003918.t1
chr4.2 CDS 39484444 39484502 39484444 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39484583 39484658 39484583 ID=MS.gene003918.t1.exon4;Parent=MS.gene003918.t1
chr4.2 CDS 39484583 39484658 39484583 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39484742 39484819 39484742 ID=MS.gene003918.t1.exon5;Parent=MS.gene003918.t1
chr4.2 CDS 39484742 39484819 39484742 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39484901 39484988 39484901 ID=MS.gene003918.t1.exon6;Parent=MS.gene003918.t1
chr4.2 CDS 39484901 39484988 39484901 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39485097 39485352 39485097 ID=MS.gene003918.t1.exon7;Parent=MS.gene003918.t1
chr4.2 CDS 39485097 39485352 39485097 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39485569 39485684 39485569 ID=MS.gene003918.t1.exon8;Parent=MS.gene003918.t1
chr4.2 CDS 39485569 39485684 39485569 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39485971 39486188 39485971 ID=MS.gene003918.t1.exon9;Parent=MS.gene003918.t1
chr4.2 CDS 39485971 39486188 39485971 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39486323 39486354 39486323 ID=MS.gene003918.t1.exon10;Parent=MS.gene003918.t1
chr4.2 CDS 39486323 39486354 39486323 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39486515 39486584 39486515 ID=MS.gene003918.t1.exon11;Parent=MS.gene003918.t1
chr4.2 CDS 39486515 39486584 39486515 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39486681 39486789 39486681 ID=MS.gene003918.t1.exon12;Parent=MS.gene003918.t1
chr4.2 CDS 39486681 39486789 39486681 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
chr4.2 exon 39486925 39487117 39486925 ID=MS.gene003918.t1.exon13;Parent=MS.gene003918.t1
chr4.2 CDS 39486925 39487117 39486925 ID=cds.MS.gene003918.t1;Parent=MS.gene003918.t1
Gene Sequence

>MS.gene003918

ATGCTTTTGAACCTTCTTCACTACTCCATCTTCGCGACTTTTCCGATCTCAATCGGACCTGTTTCCCGCCAGGCTTTGTTTTCGGAACAGCTTCTTCTGCATTTCAGGCACACAAACAAACATCTTTCAATTTTATTATTATTATTATTATTATTATTTATAACATGCATGCAATGTAGAAATGTAGTTATTAGATATTTGATTTTGTGTAATGATTAAGTTTCATGTTATTTAAAAATTTTGTAGTATGAAGGTGCAGCATTTGAAGATGGAAAAGGACCAAGTATTTGGGATACTTTCACTCATGAGCACCCAGGTTATTTTTAATTACTTCTCTTTCATTTTGCAATTTTGAAAATATTAATATCATGTTTTTTTTGGTAATATGGGTTCAAACCTGCAACATGTCCAAATAATATTAGTATGTTATTTTACATCACGCTTTATTGCACATCTGATCTTAAATCGTTAGATTAAGATAGGGAAACTCTATCTCAATATAACCGTCCAACTTGCATCGTAAAGCCAACTGTAGCGAATTCATGCCCGTTCATTTAGGGCATAAATGAACGGACATGTGGAGCTCCTTTCTTTATGCTTGTGGGATCTTGCATGTTCCATTCAATTTAGTGCAACATTTGCCTTTTCAAAAAAAAAAAAAATTGTAATAATAATAATTAAACTTAGTGCAACTTGCTGGCTTTTCCTTAATGATGTATTTGGTGCAAGAATCATGATCAACAGTCATTTTCAGCATAAGTAGCTTCTGAATGCCTTGGAGATCCAACATAGCATAAGTTTTTGCTTGCTTTACTTATATATTGATTTGCCTAGTTACGTAGCATGAATGGATTTCTCATATATATTAATGATATGGCTTGCAGAAAAAATAAGAGATGGAGGTAATGGAGATGTAGCCGACGACGCATATCATCGGTACAAGGTATGTAGTTTTGCAGAGGTATATAAAATACAAATGTAACATAGATTGAGACTCATGATAGATTACTCTATGTATTTCAGGAAGATATTGGAATCATAAAGGATTTGAATATGGATGCTTATAGATTTTCCATTGCTTGGTCTAGAGTGCTACCAAGTAAGTCATATCTTTGTAAATATTCCTCCCTTATACATTTGTGATATAGTAATCATCATAAATTTCCTATTAACTATTTGCAGAAGGAAAGCTTAGTGGAGGTGTAAACCGTGAAGGAATAAACTACTACAACAACCTCATCAACGAACTATTGGCTAATGGTAAAGATTCATCAATTTTTATTTACTTATTTTCATATCCATGTGGTTGTCAATCATAAATAATCATTGAGAATAATGCAGGTTTGCAGCCATATGTGACTCTTTTCCATTGGGACGTTCCTCAAGCCTTAGAGGATGAGTATGACGGTTTTTTAAGCCCTCGGATTGTGTGAGTGACACCAATTTTCAATCTAGAGCGATTTGTTTATGACTATTTAGGGAAATATTGCAGTAAATAAAATTAGTCGATTAACATATGTAATCCGCGATCTTGCAGAGACGATTTTAGGGACTATGCTGACCTTTGCTACAAGGAATTTGGTGATAGAGTGAAACATTGGATTACTTTGAATGAACCATGGAGTGTGAGCATGAATGCTTATGCATATGGGAAGTTTGCACCGGGTCGATGTTCAGATTGGTTAAATCTGAATTGCACAGGAGGTGATTCGGGAACAGAACCATATTTGGCTGCACACTACCAACTTCTTGCTCATGCTGCTGCTACAAAACTATACAAGACCAAATATCAGGTCTTCTGTTTTTAAAAGCAATATATTATTCAAATTCGGCACTGAATCTTTATGTCCTGAAATTCAAATAACACGAGACTTGATCTTCTGTAATAGAAGGGCAAGTCGGACAAAAGTATACACAATTGCTTTCTATTGATAGATCATACTTATTTTTTTAGTGTGAACTTATTAGAGCTGTTTCTAACCAAATAACCAAAATTTTGAAATATGCAGGCATCTCAATATGGTATAATAGGGATTACCTTACTCTCTCATTGGTATGAGCCGGCCTCTCAAGCGAAAGAAGATGTTGATGCTGCACAACGAGGCCTCGACTTCATGTTTGGATGGTAAAGATTAATTTTAACTATTCGTAGCTCAACTAACAGATATGATCATGAAATTTTTTGAAAATATTAATTAATTTTTCTAACAATGTGATCATGATAATCTGATTAATATTGAATCTAAACTTCATTTGATTTTGGTTCACTTTGTGTTTTGAACTCAAGAAATTAGTTATGTAGATTTGCTGAATTCAAATGCAACTATATGCCATTTGTGCAAAGTAATAGGAAATCAAAGAAGACTAATACATTTTTGTGATTGCATCTGCATTTTGCATTTTTTCTGTAGGTATATGGATCCAATCACAAAAGGTAACTATCCAAAAAGTATGCGATCTTTGGTTGGAAGCCGGCTACCAAAGTTCTCCAAAGAAGAATCCGAGGATCTTAAGGGGTCCTTTGATTTTCTTGGCCTAAACTATTACTCTTCCTCTTATGCTGCTGATGCACCTCACTTACGTGATGCCAGACCCGCCATACAAACTGATTCTCTTATCAATGCTACATGTAATTATCAAATTAAATATATGCTTGCACTAGTTAATTGTTTTGAACTGAAGTGCAACAGAATTGAAAGAAAATTCATCATACATACTCTAACATTTATATCTAATCATGGTTTTTTATTTTTTCGATGACAGTTCATCGTGATGGCAAGCCCCTTGGTCCAATGGTATATATTTTATCATTCATTAGCATCTAATTTGCATATCAATGCCTCTCATTTGTAGCTTTTGTGTTCCAAAATATTATTTCTAAAATATAACGTGAACCTTTTTTTAATTATATGCAGTCTGCTTCAAGTTGGTTATGCATTTATCCGCGAGGATTAGGATTTAGGACAACTGTTGCTTTACGTCAAGAATAAGTATAACAACCCCGTAATTTACATTACCGAAAATGGTAATAACTCTATTATACTTCTTATTCTCTTTTATATTATATGCATAATACTGAAACTTTAATAAAGCTAATGAAAGTGACAAAATCAATTGATAGGTCGCGATGAGTTCAACGATCCAAAACTGTCGCTTGAAGAATCCCTTTTAGATACTTACAGAATCGATTACTTTTACCGTCATCTTTATTATGTTCAAGCTGCAATCAGGTAACTAATGCTTTATCAGAAGAGCCTCTAAGCTTCTAGTTATTGATTTGTAGGTTTTATACATATCAATTGACAATGCATTTTTTCTACCCTTCCTTTTTACATTTACCTATTATTGACCTTTATGCATAACAGGGAAGGTGTGAATGTAAAGGGATATTTTGCATGGTCATTGTTGGATAACCATGAATGGGAATCTGGCTTCAGCTTGCGATTTGGACTCGTCTTTGTGGATTATAACGACGACTTGAAACGACACCCAAAACTTTCGGCACATTGGTTCAAGAATTTCCTCAAAAAATCTTGCCAAGAAAAGTGTTCTGTTTAA
Protein sequence

>MS.gene003918.t1

MLLNLLHYSIFATFPISIGPYEGAAFEDGKGPSIWDTFTHEHPEKIRDGGNGDVADDAYHRYKEDIGIIKDLNMDAYRFSIAWSRVLPKGKLSGGVNREGINYYNNLINELLANGLQPYVTLFHWDVPQALEDEYDGFLSPRIVDDFRDYADLCYKEFGDRVKHWITLNEPWSVSMNAYAYGKFAPGRCSDWLNLNCTGGDSGTEPYLAAHYQLLAHAAATKLYKTKYQASQYGIIGITLLSHWYEPASQAKEDVDAAQRGLDFMFGWYMDPITKGNYPKSMRSLVGSRLPKFSKEESEDLKGSFDFLGLNYYSSSYAADAPHLRDARPAIQTDSLINATFHRDGKPLGPMDLGQLLLYVKNKYNNPVIYITENGRDEFNDPKLSLEESLLDTYRIDYFYRHLYYVQAAIREGVNVKGYFAWSLLDNHEWESGFSLRFGLVFVDYNDDLKRHPKLSAHWFKNFLKKSCQEKCSV