AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042246.t1 MTR_4g131800 93.911 542 32 1 1 542 489 1029 0.0 1076
MS.gene042246.t1 MTR_2g022760 72.047 508 140 2 1 506 8 515 0.0 774
MS.gene042246.t1 MTR_4g131810 70.798 476 136 2 32 504 32 507 0.0 719
MS.gene042246.t1 MTR_2g022710 63.655 498 179 1 9 504 14 511 0.0 672
MS.gene042246.t1 MTR_2g022760 74.515 412 105 0 95 506 1 412 0.0 657
MS.gene042246.t1 MTR_2g022710 63.348 442 160 1 9 448 14 455 0.0 589
MS.gene042246.t1 MTR_2g022710 63.348 442 160 1 9 448 14 455 0.0 587
MS.gene042246.t1 MTR_2g022710 64.390 410 146 0 95 504 1 410 0.0 568
MS.gene042246.t1 MTR_2g022710 65.517 406 138 1 9 412 14 419 0.0 560
MS.gene042246.t1 MTR_2g079580 49.621 528 257 3 5 531 8 527 0.0 558
MS.gene042246.t1 MTR_2g079550 48.851 522 258 3 5 525 6 519 0.0 547
MS.gene042246.t1 MTR_2g022710 64.721 394 137 1 9 400 14 407 0.0 535
MS.gene042246.t1 MTR_2g022710 65.405 370 126 1 9 376 14 383 5.26e-178 508
MS.gene042246.t1 MTR_4g083000 48.560 486 241 5 24 504 24 505 4.76e-164 476
MS.gene042246.t1 MTR_2g079580 52.567 409 192 2 5 412 8 415 7.42e-163 469
MS.gene042246.t1 MTR_2g098520 47.789 475 242 5 33 503 39 511 5.74e-160 466
MS.gene042246.t1 MTR_2g098540 48.211 475 240 5 33 503 36 508 6.12e-159 463
MS.gene042246.t1 MTR_4g066630 49.260 473 234 5 33 501 44 514 7.51e-159 463
MS.gene042246.t1 MTR_4g066210 48.954 478 238 5 33 506 48 523 1.11e-158 463
MS.gene042246.t1 MTR_0110s0040 47.890 474 238 5 33 504 48 514 4.68e-158 461
MS.gene042246.t1 MTR_6g078330 47.119 486 251 6 24 505 33 516 5.19e-158 461
MS.gene042246.t1 MTR_6g078450 48.421 475 237 7 33 502 41 512 2.03e-157 459
MS.gene042246.t1 MTR_0110s0030 47.789 475 237 5 33 504 48 514 9.81e-157 457
MS.gene042246.t1 MTR_4g066240 46.943 507 260 7 3 502 8 512 3.03e-156 456
MS.gene042246.t1 MTR_2g098790 45.833 504 263 6 7 502 13 514 9.60e-156 455
MS.gene042246.t1 MTR_4g066580 47.789 475 242 5 33 503 44 516 1.06e-155 455
MS.gene042246.t1 MTR_6g078380 49.057 477 235 8 33 504 41 514 1.47e-155 454
MS.gene042246.t1 MTR_3g026280 46.450 493 253 6 12 500 6 491 1.53e-155 454
MS.gene042246.t1 MTR_4g081530 47.117 503 256 6 2 500 2 498 1.88e-155 454
MS.gene042246.t1 MTR_4g066240 46.850 508 260 8 3 502 8 513 1.88e-154 451
MS.gene042246.t1 MTR_5g044000 44.867 526 255 9 1 500 4 520 5.40e-154 451
MS.gene042246.t1 MTR_4g066590 47.780 473 241 5 33 501 38 508 1.32e-153 449
MS.gene042246.t1 MTR_4g023000 44.112 501 270 5 5 502 1 494 6.22e-152 444
MS.gene042246.t1 MTR_3g028720 46.316 475 249 5 33 503 43 515 3.97e-151 444
MS.gene042246.t1 MTR_2g098540 47.505 461 236 5 47 503 6 464 1.75e-150 439
MS.gene042246.t1 MTR_3g026400 46.458 480 251 4 27 504 36 511 3.98e-148 435
MS.gene042246.t1 MTR_4g066640 47.170 477 240 7 33 503 44 514 4.64e-148 435
MS.gene042246.t1 MTR_5g071520 47.826 483 237 6 33 502 44 524 6.28e-148 435
MS.gene042246.t1 MTR_3g026620 45.825 515 264 6 1 504 2 512 1.51e-147 434
MS.gene042246.t1 MTR_4g066340 48.380 432 218 4 74 502 10 439 7.48e-145 424
MS.gene042246.t1 MTR_3g033790 45.228 482 248 5 21 500 12 479 7.64e-145 426
MS.gene042246.t1 MTR_4g066330 46.512 473 225 5 33 502 46 493 2.41e-144 425
MS.gene042246.t1 MTR_3g033810 46.170 483 233 6 26 500 19 482 3.34e-144 424
MS.gene042246.t1 MTR_4g066280 45.570 474 230 5 33 503 46 494 1.96e-143 422
MS.gene042246.t1 MTR_3g026400 45.745 470 247 5 37 504 17 480 6.83e-141 416
MS.gene042246.t1 MTR_2g043200 46.234 478 221 7 33 502 70 519 1.60e-137 409
MS.gene042246.t1 MTR_4g066630 48.804 418 209 4 33 447 44 459 9.79e-137 404
MS.gene042246.t1 MTR_4g083000 46.988 415 211 5 95 504 1 411 1.97e-133 394
MS.gene042246.t1 MTR_6g078450 47.857 420 212 6 33 448 41 457 3.14e-133 395
MS.gene042246.t1 MTR_6g078330 46.135 414 218 5 95 505 1 412 1.61e-132 392
MS.gene042246.t1 MTR_4g066630 49.608 383 188 4 33 412 44 424 3.83e-130 387
MS.gene042246.t1 MTR_3g028720 45.585 419 223 4 33 448 43 459 2.70e-128 383
MS.gene042246.t1 MTR_4g015420 41.715 513 254 10 3 502 45 525 4.62e-128 384
MS.gene042246.t1 MTR_4g015460 42.052 497 251 7 19 504 33 503 8.42e-128 383
MS.gene042246.t1 MTR_7g068910 39.468 489 280 5 22 507 25 500 2.97e-127 382
MS.gene042246.t1 MTR_4g016920 40.408 490 262 6 28 507 27 496 4.38e-127 382
MS.gene042246.t1 MTR_4g066580 48.042 383 194 4 33 412 44 424 8.73e-127 378
MS.gene042246.t1 MTR_7g068910 38.677 499 280 6 22 507 25 510 2.66e-124 375
MS.gene042246.t1 MTR_4g066240 45.913 416 217 6 3 412 8 421 5.92e-123 368
MS.gene042246.t1 MTR_3g028720 46.736 383 199 4 33 412 43 423 1.79e-122 367
MS.gene042246.t1 MTR_6g078330 44.776 402 215 6 107 505 15 412 8.03e-122 365
MS.gene042246.t1 MTR_5g068740 39.357 498 282 9 7 500 7 488 8.21e-122 368
MS.gene042246.t1 MTR_1g088610 38.966 503 276 9 7 500 7 487 8.44e-121 369
MS.gene042246.t1 MTR_1g088610 35.537 121 70 2 387 505 503 617 7.92e-16 80.9
MS.gene042246.t1 MTR_4g067040 45.320 406 206 5 9 400 4 407 2.68e-119 358
MS.gene042246.t1 MTR_4g066630 52.848 316 146 3 33 345 44 359 3.43e-115 346
MS.gene042246.t1 MTR_7g033860 39.535 473 269 8 33 501 53 512 3.15e-114 348
MS.gene042246.t1 MTR_0110s0040 50.641 312 153 1 33 344 48 358 5.59e-114 344
MS.gene042246.t1 MTR_4g067040 49.422 346 170 4 33 375 39 382 6.37e-114 343
MS.gene042246.t1 MTR_0108s0030 38.445 476 252 9 33 501 8 449 5.54e-112 341
MS.gene042246.t1 MTR_3g026400 50.629 318 155 2 27 343 36 352 1.61e-110 334
MS.gene042246.t1 MTR_6g078330 49.846 325 160 3 24 345 33 357 5.86e-109 330
MS.gene042246.t1 MTR_3g028720 46.821 346 179 4 33 375 43 386 1.05e-108 330
MS.gene042246.t1 MTR_4g066640 48.563 348 168 6 33 375 44 385 2.21e-108 329
MS.gene042246.t1 MTR_7g068900 38.824 425 239 7 89 507 16 425 7.01e-105 323
MS.gene042246.t1 MTR_4g016920 39.243 423 227 6 95 507 1 403 2.57e-104 320
MS.gene042246.t1 MTR_7g051510 36.907 485 268 10 33 506 80 537 5.66e-101 315
MS.gene042246.t1 MTR_1g088630 37.991 458 240 10 47 500 14 431 5.31e-99 307
MS.gene042246.t1 MTR_7g051610 35.892 482 267 11 33 501 80 532 3.26e-95 300
MS.gene042246.t1 MTR_7g051650 36.688 477 271 9 33 501 80 533 5.15e-94 297
MS.gene042246.t1 MTR_7g051650 36.268 477 269 9 33 501 80 529 6.86e-93 294
MS.gene042246.t1 MTR_7g056747 37.260 416 230 8 90 501 10 398 2.40e-84 268
MS.gene042246.t1 MTR_1g088630 41.765 340 168 6 7 344 7 318 5.07e-83 263
MS.gene042246.t1 MTR_0110s0020 53.363 223 103 1 33 255 48 269 9.97e-82 258
MS.gene042246.t1 MTR_1g088630 45.455 286 150 4 7 290 7 288 3.96e-78 248
MS.gene042246.t1 MTR_4g016920 45.312 256 138 2 95 349 1 255 3.98e-76 243
MS.gene042246.t1 MTR_4g122980 25.785 446 244 15 91 525 183 552 1.47e-30 126
MS.gene042246.t1 MTR_2g022730 45.679 81 42 1 378 456 24 104 1.21e-16 79.3
MS.gene042246.t1 MTR_8g038650 36.792 106 66 1 244 349 51 155 3.22e-16 76.6
MS.gene042246.t1 MTR_5g069350 33.125 160 55 6 359 502 66 189 5.50e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042246.t1 AT1G61820 61.426 477 182 2 29 503 31 507 0.0 637
MS.gene042246.t1 AT1G61810 61.845 477 180 2 29 503 34 510 0.0 636
MS.gene042246.t1 AT4G21760 60.752 479 183 2 31 509 57 530 0.0 633
MS.gene042246.t1 AT1G61810 61.688 462 175 2 29 488 34 495 0.0 615
MS.gene042246.t1 AT4G21760 59.499 479 179 3 31 509 57 520 0.0 613
MS.gene042246.t1 AT1G61810 60.732 410 160 1 95 503 1 410 0.0 541
MS.gene042246.t1 AT1G61810 61.917 386 145 2 29 412 34 419 6.01e-179 511
MS.gene042246.t1 AT1G61820 59.239 368 149 1 137 503 1 368 2.50e-167 479
MS.gene042246.t1 AT1G26560 48.734 474 233 6 33 500 37 506 2.12e-160 467
MS.gene042246.t1 AT3G18080 46.862 478 236 5 33 503 44 510 1.35e-156 457
MS.gene042246.t1 AT5G54570 47.401 481 246 6 25 500 27 505 1.09e-151 445
MS.gene042246.t1 AT3G18070 45.094 479 243 6 33 504 35 500 3.19e-150 440
MS.gene042246.t1 AT2G44450 46.653 478 244 6 33 506 36 506 7.77e-150 439
MS.gene042246.t1 AT3G18070 44.885 479 238 6 33 504 35 494 4.35e-149 437
MS.gene042246.t1 AT2G44480 46.822 472 246 4 33 501 40 509 9.97e-149 437
MS.gene042246.t1 AT2G44480 46.822 472 246 4 33 501 71 540 3.12e-148 437
MS.gene042246.t1 AT5G44640 45.702 477 247 7 33 504 36 505 3.31e-147 433
MS.gene042246.t1 AT5G42260 46.695 469 238 7 33 496 36 497 3.41e-146 430
MS.gene042246.t1 AT3G60130 45.666 473 245 7 33 500 35 500 1.41e-144 426
MS.gene042246.t1 AT2G25630 45.073 477 233 8 33 504 35 487 3.89e-138 409
MS.gene042246.t1 AT5G36890 45.435 471 242 6 33 500 21 479 1.14e-137 408
MS.gene042246.t1 AT5G36890 45.435 471 242 6 33 500 21 479 1.44e-137 407
MS.gene042246.t1 AT3G60140 41.794 524 297 7 9 525 7 529 6.25e-137 409
MS.gene042246.t1 AT5G24550 43.125 480 268 5 28 502 32 511 1.00e-134 402
MS.gene042246.t1 AT4G27830 41.317 501 272 8 5 500 1 484 2.33e-134 400
MS.gene042246.t1 AT4G27820 42.593 486 254 8 21 500 16 482 8.87e-133 396
MS.gene042246.t1 AT1G02850 43.100 471 249 7 33 500 31 485 1.25e-132 395
MS.gene042246.t1 AT5G54570 46.838 427 222 4 25 448 27 451 2.92e-131 390
MS.gene042246.t1 AT1G61810 66.792 265 87 1 29 292 34 298 1.35e-130 383
MS.gene042246.t1 AT5G24540 43.333 480 267 5 28 502 32 511 4.17e-129 387
MS.gene042246.t1 AT2G44470 39.147 539 320 8 3 535 3 539 1.42e-128 388
MS.gene042246.t1 AT1G02850 41.296 494 248 8 33 500 31 508 5.11e-128 384
MS.gene042246.t1 AT2G44480 45.721 409 218 3 95 501 1 407 2.11e-127 379
MS.gene042246.t1 AT2G44460 42.659 504 279 8 25 523 26 524 2.40e-126 382
MS.gene042246.t1 AT1G02850 41.212 495 248 9 33 500 31 509 3.16e-126 380
MS.gene042246.t1 AT1G47600 42.116 482 263 8 25 502 42 511 1.41e-125 377
MS.gene042246.t1 AT1G47600 42.116 482 262 8 25 502 42 510 2.70e-125 377
MS.gene042246.t1 AT3G60130 44.819 415 218 6 90 500 41 448 1.49e-124 373
MS.gene042246.t1 AT4G22100 40.421 475 267 6 33 505 27 487 3.86e-124 374
MS.gene042246.t1 AT5G54570 45.610 410 217 5 95 500 1 408 5.99e-124 371
MS.gene042246.t1 AT1G51470 41.701 482 265 8 25 502 42 511 1.37e-123 372
MS.gene042246.t1 AT1G60090 39.400 500 278 9 6 500 3 482 8.67e-123 370
MS.gene042246.t1 AT1G60090 38.767 503 284 9 6 500 3 489 3.72e-122 369
MS.gene042246.t1 AT2G32860 41.250 480 273 8 33 505 99 576 2.09e-120 368
MS.gene042246.t1 AT1G02850 40.764 471 233 8 33 500 31 458 3.18e-120 362
MS.gene042246.t1 AT3G62750 39.419 482 266 9 21 500 16 473 2.64e-119 361
MS.gene042246.t1 AT2G32860 41.458 480 271 9 33 505 99 575 3.18e-119 365
MS.gene042246.t1 AT3G62750 39.419 482 266 9 21 500 42 499 7.73e-119 361
MS.gene042246.t1 AT3G60130 43.855 415 211 7 90 500 41 437 2.99e-118 357
MS.gene042246.t1 AT3G60120 39.918 486 285 7 22 502 8 491 9.25e-118 358
MS.gene042246.t1 AT2G44490 39.200 500 293 10 33 523 19 516 2.96e-117 358
MS.gene042246.t1 AT5G26000 41.532 496 267 10 28 511 38 522 3.58e-117 357
MS.gene042246.t1 AT3G21370 40.947 486 273 11 25 500 30 511 3.67e-116 354
MS.gene042246.t1 AT1G45191 36.489 507 297 8 2 505 4 488 8.00e-116 352
MS.gene042246.t1 AT5G25980 41.803 488 264 13 23 500 45 522 2.29e-115 352
MS.gene042246.t1 AT1G45191 36.542 509 300 7 2 505 4 494 9.51e-115 350
MS.gene042246.t1 AT1G45191 36.759 506 308 5 2 505 4 499 5.44e-114 348
MS.gene042246.t1 AT1G45191 36.381 514 311 5 2 505 4 511 1.96e-112 344
MS.gene042246.t1 AT3G62740 36.821 497 282 10 11 500 7 478 9.77e-112 342
MS.gene042246.t1 AT1G66280 39.832 477 275 8 33 502 41 512 6.47e-110 338
MS.gene042246.t1 AT1G66270 39.413 477 277 8 33 502 41 512 1.17e-109 337
MS.gene042246.t1 AT3G09260 38.716 483 289 7 25 502 32 512 3.57e-109 336
MS.gene042246.t1 AT4G27830 40.146 411 226 6 95 500 1 396 5.91e-109 332
MS.gene042246.t1 AT3G18070 48.397 312 158 2 33 344 35 343 6.28e-109 330
MS.gene042246.t1 AT1G75940 38.900 491 262 11 33 500 42 517 5.63e-108 333
MS.gene042246.t1 AT5G28510 38.650 489 286 8 25 502 36 521 1.30e-107 332
MS.gene042246.t1 AT4G27820 41.019 412 222 7 95 500 1 397 2.74e-107 327
MS.gene042246.t1 AT4G27820 41.019 412 222 7 95 500 1 397 2.74e-107 327
MS.gene042246.t1 AT1G52400 39.220 487 280 12 24 500 35 515 6.66e-107 330
MS.gene042246.t1 AT1G52400 39.220 487 280 12 24 500 35 515 6.66e-107 330
MS.gene042246.t1 AT2G44470 38.530 449 271 5 3 447 3 450 1.80e-106 327
MS.gene042246.t1 AT1G66270 39.203 477 276 10 33 502 41 510 2.74e-106 328
MS.gene042246.t1 AT5G24540 41.608 423 244 3 28 447 32 454 7.80e-106 325
MS.gene042246.t1 AT3G60140 41.032 407 236 4 9 412 7 412 1.89e-105 324
MS.gene042246.t1 AT1G02850 41.584 404 202 5 33 412 31 424 1.91e-104 321
MS.gene042246.t1 AT3G03640 36.210 533 315 11 5 517 1 528 2.36e-104 323
MS.gene042246.t1 AT2G44480 49.841 315 155 3 24 336 62 375 2.92e-102 313
MS.gene042246.t1 AT2G44450 43.094 362 197 4 147 506 1 355 2.11e-101 310
MS.gene042246.t1 AT5G25980 40.878 433 239 11 23 448 45 467 1.77e-98 306
MS.gene042246.t1 AT5G25980 40.878 433 239 11 23 448 45 467 1.77e-98 306
MS.gene042246.t1 AT5G26000 40.706 425 232 8 33 448 43 456 2.87e-97 303
MS.gene042246.t1 AT3G62750 37.674 430 244 8 21 450 42 447 3.40e-97 303
MS.gene042246.t1 AT3G62750 37.990 408 231 8 95 500 1 388 3.20e-96 299
MS.gene042246.t1 AT3G62750 37.990 408 231 8 95 500 1 388 3.20e-96 299
MS.gene042246.t1 AT1G60270 43.544 333 182 3 7 337 1 329 4.70e-95 295
MS.gene042246.t1 AT2G44470 43.605 344 190 4 3 342 3 346 1.75e-93 291
MS.gene042246.t1 AT3G18070 42.059 340 180 4 172 504 94 423 6.85e-93 290
MS.gene042246.t1 AT3G18070 55.357 56 25 0 33 88 35 90 2.00e-12 69.7
MS.gene042246.t1 AT3G62740 37.838 407 229 8 11 412 7 394 2.02e-92 289
MS.gene042246.t1 AT3G62750 42.901 324 172 4 21 344 16 326 7.58e-91 283
MS.gene042246.t1 AT3G62750 42.901 324 172 4 21 344 16 326 7.58e-91 283
MS.gene042246.t1 AT3G62750 42.901 324 172 4 21 344 42 352 1.70e-89 282
MS.gene042246.t1 AT1G45191 40.179 336 195 3 2 337 4 333 2.06e-89 281
MS.gene042246.t1 AT1G45191 40.179 336 195 3 2 337 4 333 2.13e-89 281
MS.gene042246.t1 AT1G52400 38.426 432 252 10 24 447 35 460 2.18e-88 280
MS.gene042246.t1 AT3G18070 41.875 320 169 4 192 504 2 311 9.07e-87 271
MS.gene042246.t1 AT2G44460 40.992 383 217 7 145 523 1 378 1.71e-83 266
MS.gene042246.t1 AT5G48375 36.364 418 199 9 56 466 54 411 8.12e-79 254
MS.gene042246.t1 AT2G44480 40.864 301 175 2 202 501 5 303 1.03e-77 247
MS.gene042246.t1 AT1G51490 43.408 311 160 9 36 342 28 326 3.60e-72 236
MS.gene042246.t1 AT1G60270 43.210 243 137 1 95 337 1 242 9.96e-71 228
MS.gene042246.t1 AT3G18070 41.296 247 132 2 172 412 94 333 3.27e-63 211
MS.gene042246.t1 AT3G18070 55.357 56 25 0 33 88 35 90 9.81e-13 70.1
MS.gene042246.t1 AT3G18070 40.969 227 121 2 192 412 2 221 3.87e-57 191
MS.gene042246.t1 AT5G16580 33.446 296 177 7 166 458 21 299 1.04e-46 165
MS.gene042246.t1 AT3G06510 25.935 401 218 14 90 481 159 489 1.61e-27 117
MS.gene042246.t1 AT3G06510 25.243 412 241 12 90 481 159 523 4.98e-27 115

Find 123 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTTCCTTGGTGTTATT+TGG 0.081941 8.2:+3286990 None:intergenic
TTTGTCGTTACTGGAAAATT+TGG 0.210997 8.2:+3287495 None:intergenic
TGTCGCTGCTCCCGCAAATT+TGG 0.214872 8.2:-3288265 MS.gene042246:CDS
TACCAACTAGCTGACAATTT+TGG 0.228855 8.2:+3286677 None:intergenic
AAAATCACCTCCATCTCTTT+TGG 0.232607 8.2:+3287532 None:intergenic
CTCGTATCCGTGTCATGTTC+TGG 0.251671 8.2:+3286614 None:intergenic
GACAACTTTGAGTGGCTATT+TGG 0.252310 8.2:-3286755 MS.gene042246:CDS
TTTCCATCCAACTTTCTCTT+TGG 0.260893 8.2:-3289503 MS.gene042246:CDS
ACAGGAGGATGTAGATTTAA+TGG 0.268522 8.2:-3288925 MS.gene042246:intron
CCAAGTGAAACTTGGAGATT+TGG 0.292516 8.2:+3288313 None:intergenic
CACTGCTTCTTCTGCCTACC+AGG 0.320999 8.2:-3289480 MS.gene042246:intron
GACTGGTCACTTAGATAATC+TGG 0.322076 8.2:-3286937 MS.gene042246:CDS
CTGGTATTGACTACTATAAT+AGG 0.334064 8.2:-3288708 MS.gene042246:CDS
GCTGAGCAGGGAGGACAAAT+TGG 0.348657 8.2:-3287958 MS.gene042246:CDS
ATGTTCTGGATTACTGCTTT+CGG 0.369526 8.2:+3286628 None:intergenic
CTGTGAGCAGAAGGTAGATT+TGG 0.371053 8.2:-3288745 MS.gene042246:intron
GTTTCACTTGGTTACCGAAA+TGG 0.373316 8.2:-3288301 MS.gene042246:CDS
TTATTCACTACCTATGCTCT+TGG 0.374400 8.2:-3289563 MS.gene042246:CDS
TTGTCGTTACTGGAAAATTT+GGG 0.378693 8.2:+3287496 None:intergenic
CGCTACAATTTCCAAATTTG+CGG 0.390612 8.2:+3288254 None:intergenic
ACCAGTTGCTCACTGTGATT+GGG 0.394203 8.2:+3288492 None:intergenic
AACCAGTTGCTCACTGTGAT+TGG 0.401532 8.2:+3288491 None:intergenic
GCTACAATTTCCAAATTTGC+GGG 0.406017 8.2:+3288255 None:intergenic
TGATCAATATCATCGGTATC+TGG 0.408911 8.2:-3289156 MS.gene042246:intron
CATGTGATAGGATAATATTA+TGG 0.409137 8.2:+3288197 None:intergenic
CAAGAACTTGACGACAGATA+TGG 0.410450 8.2:-3288529 MS.gene042246:CDS
TCTATAATAATGCAGGATCT+TGG 0.411513 8.2:-3287578 MS.gene042246:intron
CAACTGCAGCTGCATGTGAT+AGG 0.416110 8.2:+3288185 None:intergenic
ATGACACGGATACGAGAAAC+TGG 0.424883 8.2:-3286607 MS.gene042246:CDS
ATGGTGGGTGTTTACCATTT+CGG 0.426254 8.2:+3288287 None:intergenic
AATCGAGGACTCGATTTCAT+TGG 0.429047 8.2:-3287463 MS.gene042246:CDS
GGGTACTTGCCGAAGAAGAT+TGG 0.431182 8.2:+3287553 None:intergenic
AATATTATGGGCTGCTACAA+AGG 0.431696 8.2:+3288210 None:intergenic
TTCGGTAACCAAGTGAAACT+TGG 0.437487 8.2:+3288305 None:intergenic
GCATTGTCGTACACGTTGAC+TGG 0.438002 8.2:-3287936 MS.gene042246:CDS
GTTTGAACCGTTTAGCAATT+CGG 0.441412 8.2:-3287914 MS.gene042246:CDS
ATATCATCAATGTGTGAGTC+TGG 0.444978 8.2:-3287403 MS.gene042246:CDS
ATCTTGGATCCAATCTTCTT+CGG 0.447074 8.2:-3287562 MS.gene042246:CDS
ACGCTGCATCCAGGCTGAGC+AGG 0.461536 8.2:-3287971 MS.gene042246:intron
CCAATGTTCATTACTGAGAA+TGG 0.464727 8.2:-3287125 MS.gene042246:intron
ATCATTAAGACATTCTTCCT+TGG 0.465143 8.2:+3286980 None:intergenic
CTCAATCATTCAGCATGAAC+TGG 0.467873 8.2:-3287864 MS.gene042246:intron
ATGTGTAGACTCCATTTGAT+TGG 0.470062 8.2:-3287214 MS.gene042246:intron
CCAAATCTCCAAGTTTCACT+TGG 0.472557 8.2:-3288313 MS.gene042246:CDS
GTGCTTACAAGCTCTCCAAT+GGG 0.474734 8.2:+3287322 None:intergenic
ATTGGCATCAATCATTATGC+AGG 0.475815 8.2:-3287445 MS.gene042246:CDS
AAGAGAAAGTTGGATGGAAA+AGG 0.476077 8.2:+3289506 None:intergenic
ATATTATGGGCTGCTACAAA+GGG 0.484402 8.2:+3288211 None:intergenic
ATGTGATAGGATAATATTAT+GGG 0.491989 8.2:+3288198 None:intergenic
TAAACATTGAGCCAATCAAA+TGG 0.504017 8.2:+3287203 None:intergenic
TTTGGAGAAGTCAACTTGGC+TGG 0.504319 8.2:-3288727 MS.gene042246:CDS
ATCTGTCGTCAAGTTCTTGA+GGG 0.506725 8.2:+3288533 None:intergenic
AACTTAATATTATAGTATGA+AGG 0.507201 8.2:-3289389 MS.gene042246:intron
ATGTGAGAGGATACTTTGCC+TGG 0.508878 8.2:-3286787 MS.gene042246:CDS
ATGGCAAAGGATTGAGTGAC+TGG 0.510545 8.2:-3289352 MS.gene042246:CDS
TCAGCTACCGAATTGCTAAA+CGG 0.512445 8.2:+3287907 None:intergenic
ACTGGTCACTTAGATAATCT+GGG 0.513194 8.2:-3286936 MS.gene042246:CDS
CTATCAAAGTCAACAGCTAC+CGG 0.515390 8.2:-3288899 MS.gene042246:CDS
TTGGTGACAGAGTTAAGTAC+TGG 0.515563 8.2:-3288351 MS.gene042246:CDS
AAACTGGAACAAACAATTCA+AGG 0.521421 8.2:-3286591 MS.gene042246:CDS
AGCAGTGCCAAAGAGAAAGT+TGG 0.523449 8.2:+3289496 None:intergenic
TCTACTACCCTCTGAGCCTA+CGG 0.523808 8.2:+3286553 None:intergenic
CGCTGCATCCAGGCTGAGCA+GGG 0.527593 8.2:-3287970 MS.gene042246:intron
AAGTGAAACAATGTAACAAA+CGG 0.528983 8.2:+3288562 None:intergenic
CTCCAAAATTGTCAGCTAGT+TGG 0.530460 8.2:-3286679 MS.gene042246:CDS
TTGCCCACGAAATTGAAAAC+CGG 0.531948 8.2:+3288880 None:intergenic
GAGATTTGGTTCATTGAATG+TGG 0.532609 8.2:+3288327 None:intergenic
CTGTTACCTATGTGAAGGAC+AGG 0.533086 8.2:-3287160 MS.gene042246:CDS
CTTAGAACCGTAGGCTCAGA+GGG 0.534583 8.2:-3286560 MS.gene042246:CDS
CCTTGCTTGACAACTTTGAG+TGG 0.544158 8.2:-3286763 MS.gene042246:CDS
ATTGTACCTGTCCTTCACAT+AGG 0.545267 8.2:+3287154 None:intergenic
CCATTCTCAGTAATGAACAT+TGG 0.554982 8.2:+3287125 None:intergenic
AGTGCTTACAAGCTCTCCAA+TGG 0.557979 8.2:+3287321 None:intergenic
GTATAAACCCTCTGTTGTGG+AGG 0.558557 8.2:+3287372 None:intergenic
GAAACAATGTAACAAACGGT+TGG 0.558611 8.2:+3288566 None:intergenic
AAAAGAATAAACTACATGAC+TGG 0.562119 8.2:-3286954 MS.gene042246:CDS
TGAGAATGCTCCAAGAGCAT+AGG 0.565601 8.2:+3289553 None:intergenic
AAAGTTGTCAAGCAAGGACC+AGG 0.567557 8.2:+3286769 None:intergenic
GCAAATATGCTTAGAACCGT+AGG 0.568060 8.2:-3286569 MS.gene042246:CDS
AAATTTGGAAATTGTAGCGA+GGG 0.575693 8.2:-3288250 MS.gene042246:CDS
AGGGAAGGAGCAGATGTGAG+AGG 0.576362 8.2:-3286800 MS.gene042246:CDS
TTGACGACAGATATGGAGGT+TGG 0.586833 8.2:-3288522 MS.gene042246:CDS
TATCTGTCGTCAAGTTCTTG+AGG 0.589618 8.2:+3288532 None:intergenic
ATCGACGCTTTGCTACTCAA+AGG 0.594955 8.2:-3288682 MS.gene042246:intron
TGCGGGAGCAGCGACATGGT+GGG 0.596391 8.2:+3288272 None:intergenic
CAAGGAACCTCCACAACAGA+GGG 0.596892 8.2:-3287379 MS.gene042246:CDS
CGGCAAGTACCCAAAAGAGA+TGG 0.598644 8.2:-3287542 MS.gene042246:CDS
GAAAACTGTTACCTATGTGA+AGG 0.598748 8.2:-3287165 MS.gene042246:CDS
TTGCGGGAGCAGCGACATGG+TGG 0.599395 8.2:+3288271 None:intergenic
CCAGTTGCTCACTGTGATTG+GGG 0.602755 8.2:+3288493 None:intergenic
TAGATTTGGAGAAGTCAACT+TGG 0.607687 8.2:-3288731 MS.gene042246:CDS
TTGGTATAAACCCTCTGTTG+TGG 0.608835 8.2:+3287369 None:intergenic
TGGCTCAATGTTTACCCACA+AGG 0.615458 8.2:-3287194 MS.gene042246:CDS
GTGCCAAAGAGAAAGTTGGA+TGG 0.621854 8.2:+3289500 None:intergenic
TAGCGAGGGAGATTCAGAGA+AGG 0.625947 8.2:-3288236 MS.gene042246:CDS
AGTACTGATGATGGAAGTAA+CGG 0.629271 8.2:-3289191 MS.gene042246:CDS
GCTTAGAACCGTAGGCTCAG+AGG 0.630554 8.2:-3286561 MS.gene042246:CDS
CAGTAATCCAGAACATGACA+CGG 0.631088 8.2:-3286621 MS.gene042246:CDS
CCACTCAAAGTTGTCAAGCA+AGG 0.631883 8.2:+3286763 None:intergenic
TTACTGTTGATCAATATCAT+CGG 0.633059 8.2:-3289163 MS.gene042246:CDS
AATTTGCGGGAGCAGCGACA+TGG 0.635985 8.2:+3288268 None:intergenic
CTGGTCACTTAGATAATCTG+GGG 0.638340 8.2:-3286935 MS.gene042246:CDS
TCAATGTGTGAGTCTGGGCA+AGG 0.639903 8.2:-3287397 MS.gene042246:CDS
GTACTTAACTCTGTCACCAA+AGG 0.643194 8.2:+3288354 None:intergenic
TATCATCAATGTGTGAGTCT+GGG 0.645232 8.2:-3287402 MS.gene042246:CDS
CAAGTACCCAAAAGAGATGG+AGG 0.647849 8.2:-3287539 MS.gene042246:CDS
GAAGGTGCTTACTTGAGTGA+TGG 0.651168 8.2:-3289371 MS.gene042246:CDS
CAAATTTGGAAATTGTAGCG+AGG 0.653756 8.2:-3288251 MS.gene042246:CDS
GAACTTGACGACAGATATGG+AGG 0.657453 8.2:-3288526 MS.gene042246:CDS
AGAAGGTAAAGAAACCTGGT+AGG 0.658277 8.2:+3289466 None:intergenic
TGGAGCATTCTCATTCTCAG+AGG 0.661583 8.2:-3289543 MS.gene042246:CDS
GCTTACTTGAGTGATGGCAA+AGG 0.664601 8.2:-3289365 MS.gene042246:CDS
TGCATCCAGGCTGAGCAGGG+AGG 0.666984 8.2:-3287967 MS.gene042246:intron
TATTTATAGAAACAAATACC+AGG 0.672534 8.2:-3288161 MS.gene042246:intron
GATGTCTTCACTCATAAACC+AGG 0.676578 8.2:-3289329 MS.gene042246:intron
TCTGCGTAGCAAAATCAACA+TGG 0.676856 8.2:+3286708 None:intergenic
GACAAAGCAAAACTGAATCG+AGG 0.686534 8.2:-3287478 MS.gene042246:CDS
GCAAGGAACCTCCACAACAG+AGG 0.691222 8.2:-3287380 MS.gene042246:CDS
TGGCAAAGGATTGAGTGACT+GGG 0.697528 8.2:-3289351 MS.gene042246:CDS
TGCTTACAAGCTCTCCAATG+GGG 0.708162 8.2:+3287323 None:intergenic
TATTATGGGCTGCTACAAAG+GGG 0.721105 8.2:+3288212 None:intergenic
GTATGATCCAAATAACACCA+AGG 0.728521 8.2:-3286997 MS.gene042246:CDS
TGGTCACTTAGATAATCTGG+GGG 0.736530 8.2:-3286934 MS.gene042246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAATGTAACTAA+TGG + chr8.2:3288856-3288875 None:intergenic 10.0%
!!! ATTAAAATAATGAAGATTTT+AGG + chr8.2:3286706-3286725 None:intergenic 10.0%
!!! TAATAACATATATTTTTTTC+AGG - chr8.2:3286919-3286938 MS.gene042246:intron 10.0%
!!! TTCATTATTTTAATTAATCA+TGG - chr8.2:3286712-3286731 MS.gene042246:CDS 10.0%
!! AACTTAATATTATAGTATGA+AGG - chr8.2:3286745-3286764 MS.gene042246:CDS 15.0%
!! ACATTTAGACCATATATAAT+GGG + chr8.2:3287174-3287193 None:intergenic 20.0%
!! ATGTGATAGGATAATATTAT+GGG + chr8.2:3287939-3287958 None:intergenic 20.0%
!! GTAATTAGTTAAAGTAGATA+AGG + chr8.2:3287150-3287169 None:intergenic 20.0%
!! TATTTATAGAAACAAATACC+AGG - chr8.2:3287973-3287992 MS.gene042246:intron 20.0%
!! TGTCAATTTGTAATAAAAAC+AGG - chr8.2:3287191-3287210 MS.gene042246:CDS 20.0%
!!! AAAATCCAATTTAGTTTAAG+AGG - chr8.2:3287061-3287080 MS.gene042246:intron 20.0%
!!! CACATCATAATACTATTTTT+TGG - chr8.2:3287003-3287022 MS.gene042246:CDS 20.0%
!!! TAAATTGGATTTTGATTATG+AGG + chr8.2:3287054-3287073 None:intergenic 20.0%
! AAAAGAATAAACTACATGAC+TGG - chr8.2:3289180-3289199 MS.gene042246:CDS 25.0%
! AACAATACAACTTTCAAGAT+TGG + chr8.2:3288900-3288919 None:intergenic 25.0%
! AAGTGAAACAATGTAACAAA+CGG + chr8.2:3287575-3287594 None:intergenic 25.0%
! ACAATACAACTTTCAAGATT+GGG + chr8.2:3288899-3288918 None:intergenic 25.0%
! ACATCAAAGTTATCGATATA+TGG - chr8.2:3289258-3289277 MS.gene042246:intron 25.0%
! AGGTATTCAAGTATGAAAAA+TGG + chr8.2:3286865-3286884 None:intergenic 25.0%
! CAATTTGTAATAAAAACAGG+AGG - chr8.2:3287194-3287213 MS.gene042246:CDS 25.0%
! CATGTGATAGGATAATATTA+TGG + chr8.2:3287940-3287959 None:intergenic 25.0%
! CGATAACTTTGATGTTTATT+CGG + chr8.2:3289253-3289272 None:intergenic 25.0%
! CTAATTACACCCATTATATA+TGG - chr8.2:3287162-3287181 MS.gene042246:CDS 25.0%
! GACATTTAGACCATATATAA+TGG + chr8.2:3287175-3287194 None:intergenic 25.0%
! GTCAAAATACATTATAATGC+TGG + chr8.2:3287714-3287733 None:intergenic 25.0%
! TAACTAATGGAATCATCAAA+AGG + chr8.2:3288843-3288862 None:intergenic 25.0%
! TGGTTGAAATTCAATGAAAA+TGG + chr8.2:3289062-3289081 None:intergenic 25.0%
! TGTAACCTCTTAAACTAAAT+TGG + chr8.2:3287069-3287088 None:intergenic 25.0%
! TTACTGTTGATCAATATCAT+CGG - chr8.2:3286971-3286990 MS.gene042246:CDS 25.0%
!!! AATGTATTTTGACATGTACA+GGG - chr8.2:3287721-3287740 MS.gene042246:intron 25.0%
!!! GACATATGTTTTAAATCCTT+TGG - chr8.2:3287764-3287783 MS.gene042246:intron 25.0%
!!! TAATGTATTTTGACATGTAC+AGG - chr8.2:3287720-3287739 MS.gene042246:intron 25.0%
!!! TCACTTTTGACTTCATATTT+TGG - chr8.2:3288413-3288432 MS.gene042246:intron 25.0%
!!! TTTGGTTTTACAGTGAAATT+TGG - chr8.2:3289397-3289416 MS.gene042246:intron 25.0%
AAACTGGAACAAACAATTCA+AGG - chr8.2:3289543-3289562 MS.gene042246:CDS 30.0%
AAATAGCTGAGTATTTGTGT+TGG - chr8.2:3289299-3289318 MS.gene042246:intron 30.0%
AAATTTGGAAATTGTAGCGA+GGG - chr8.2:3287884-3287903 MS.gene042246:CDS 30.0%
AATGGTTCAAATCATGTGAT+TGG - chr8.2:3288479-3288498 MS.gene042246:intron 30.0%
AGACTGAAATCTTGATCAAA+TGG - chr8.2:3288461-3288480 MS.gene042246:intron 30.0%
ATCATTAAGACATTCTTCCT+TGG + chr8.2:3289157-3289176 None:intergenic 30.0%
ATTATGTAATTACGCAACTC+AGG + chr8.2:3286903-3286922 None:intergenic 30.0%
GGGTAGTAGAATAAAAAACT+TGG - chr8.2:3289594-3289613 MS.gene042246:CDS 30.0%
GTTTGACTCTATAATAATGC+AGG - chr8.2:3288549-3288568 MS.gene042246:CDS 30.0%
TAAACATTGAGCCAATCAAA+TGG + chr8.2:3288934-3288953 None:intergenic 30.0%
TACCATGCAAAAGTTTGATT+TGG - chr8.2:3288336-3288355 MS.gene042246:CDS 30.0%
TACTCTGACTTTAGTAAATC+AGG + chr8.2:3288439-3288458 None:intergenic 30.0%
TCTATAATAATGCAGGATCT+TGG - chr8.2:3288556-3288575 MS.gene042246:CDS 30.0%
TCTGTGTAAGAGACTAATAA+TGG + chr8.2:3289082-3289101 None:intergenic 30.0%
TTAGGAGATAAACATGAAGA+AGG + chr8.2:3286688-3286707 None:intergenic 30.0%
TTATCGATATATGGTTTACC+TGG - chr8.2:3289267-3289286 MS.gene042246:intron 30.0%
TTGTCGTTACTGGAAAATTT+GGG + chr8.2:3288641-3288660 None:intergenic 30.0%
TTTGTCGTTACTGGAAAATT+TGG + chr8.2:3288642-3288661 None:intergenic 30.0%
! ATCCAAATCAAACTTTTGCA+TGG + chr8.2:3288341-3288360 None:intergenic 30.0%
! GGTCTTTTTACTATATTACC+TGG + chr8.2:3287994-3288013 None:intergenic 30.0%
! TATTGACACAACACTTGTTA+AGG + chr8.2:3287093-3287112 None:intergenic 30.0%
! TGATGTTTATTCGGTTTTTG+TGG + chr8.2:3289244-3289263 None:intergenic 30.0%
!! CTGGTATTGACTACTATAAT+AGG - chr8.2:3287426-3287445 MS.gene042246:CDS 30.0%
!! TCTATCCGAATGTTTTTGTA+GGG - chr8.2:3289103-3289122 MS.gene042246:intron 30.0%
AAGAGAAAGTTGGATGGAAA+AGG + chr8.2:3286631-3286650 None:intergenic 35.0%
ACAGGAGGATGTAGATTTAA+TGG - chr8.2:3287209-3287228 MS.gene042246:CDS 35.0%
ACTGGTCACTTAGATAATCT+GGG - chr8.2:3289198-3289217 MS.gene042246:intron 35.0%
ATATCATCAATGTGTGAGTC+TGG - chr8.2:3288731-3288750 MS.gene042246:CDS 35.0%
ATCTTGGATCCAATCTTCTT+CGG - chr8.2:3288572-3288591 MS.gene042246:CDS 35.0%
ATGAAGAAGGTAAAGAAACC+TGG + chr8.2:3286675-3286694 None:intergenic 35.0%
ATGCTGGTAAAGTATGACAA+AGG + chr8.2:3287698-3287717 None:intergenic 35.0%
ATGTGTAGACTCCATTTGAT+TGG - chr8.2:3288920-3288939 MS.gene042246:CDS 35.0%
ATTGGCATCAATCATTATGC+AGG - chr8.2:3288689-3288708 MS.gene042246:CDS 35.0%
CAAATTTGGAAATTGTAGCG+AGG - chr8.2:3287883-3287902 MS.gene042246:CDS 35.0%
CAACAAACTGCACAAAAAGA+TGG - chr8.2:3288785-3288804 MS.gene042246:intron 35.0%
CCAATGTTCATTACTGAGAA+TGG - chr8.2:3289009-3289028 MS.gene042246:intron 35.0%
CCATACCCTACAAAAACATT+CGG + chr8.2:3289111-3289130 None:intergenic 35.0%
CCATTCTCAGTAATGAACAT+TGG + chr8.2:3289012-3289031 None:intergenic 35.0%
CGCTACAATTTCCAAATTTG+CGG + chr8.2:3287883-3287902 None:intergenic 35.0%
GAAAACTGTTACCTATGTGA+AGG - chr8.2:3288969-3288988 MS.gene042246:intron 35.0%
GAAACAATGTAACAAACGGT+TGG + chr8.2:3287571-3287590 None:intergenic 35.0%
GAAATGTTGTTATCATGACC+TGG + chr8.2:3286826-3286845 None:intergenic 35.0%
GCTACAATTTCCAAATTTGC+GGG + chr8.2:3287882-3287901 None:intergenic 35.0%
GTATGATCCAAATAACACCA+AGG - chr8.2:3289137-3289156 MS.gene042246:intron 35.0%
GTTAAATCAAGATGCGTACT+TGG + chr8.2:3287288-3287307 None:intergenic 35.0%
GTTTGAACCGTTTAGCAATT+CGG - chr8.2:3288220-3288239 MS.gene042246:CDS 35.0%
TACAACTTTCAAGATTGGGT+TGG + chr8.2:3288895-3288914 None:intergenic 35.0%
TAGAGTCAAACTTCATGATC+AGG + chr8.2:3288540-3288559 None:intergenic 35.0%
TAGATTTGGAGAAGTCAACT+TGG - chr8.2:3287403-3287422 MS.gene042246:CDS 35.0%
TATCATCAATGTGTGAGTCT+GGG - chr8.2:3288732-3288751 MS.gene042246:CDS 35.0%
TCAGGTGATTGAATGAATGA+AGG + chr8.2:3286885-3286904 None:intergenic 35.0%
TGATCAATATCATCGGTATC+TGG - chr8.2:3286978-3286997 MS.gene042246:CDS 35.0%
TTATTCACTACCTATGCTCT+TGG - chr8.2:3286571-3286590 MS.gene042246:CDS 35.0%
TTTCCATCCAACTTTCTCTT+TGG - chr8.2:3286631-3286650 MS.gene042246:CDS 35.0%
! AAAATCACCTCCATCTCTTT+TGG + chr8.2:3288605-3288624 None:intergenic 35.0%
! AAAGAGATGGAGGTGATTTT+AGG - chr8.2:3288605-3288624 MS.gene042246:intron 35.0%
! AAATCACCTCCATCTCTTTT+GGG + chr8.2:3288604-3288623 None:intergenic 35.0%
! AATATTATGGGCTGCTACAA+AGG + chr8.2:3287927-3287946 None:intergenic 35.0%
! ATATTATGGGCTGCTACAAA+GGG + chr8.2:3287926-3287945 None:intergenic 35.0%
! ATGTTCTGGATTACTGCTTT+CGG + chr8.2:3289509-3289528 None:intergenic 35.0%
! CATCTTTTTGTGCAGTTTGT+TGG + chr8.2:3288787-3288806 None:intergenic 35.0%
! GAGATTTGGTTCATTGAATG+TGG + chr8.2:3287810-3287829 None:intergenic 35.0%
! TACCAACTAGCTGACAATTT+TGG + chr8.2:3289460-3289479 None:intergenic 35.0%
!! AGTACTGATGATGGAAGTAA+CGG - chr8.2:3286943-3286962 MS.gene042246:CDS 35.0%
!! CATTCTTCCTTGGTGTTATT+TGG + chr8.2:3289147-3289166 None:intergenic 35.0%
!! CTCTATCCGAATGTTTTTGT+AGG - chr8.2:3289102-3289121 MS.gene042246:intron 35.0%
!! GAGTATTTGTGTTGGTTATG+TGG - chr8.2:3289307-3289326 MS.gene042246:intron 35.0%
!!! TTTTCAGGTAGTACTGATGA+TGG - chr8.2:3286934-3286953 MS.gene042246:CDS 35.0%
AACTTTGTAGCAGCATGCTA+AGG - chr8.2:3288018-3288037 MS.gene042246:intron 40.0%
AATCGAGGACTCGATTTCAT+TGG - chr8.2:3288671-3288690 MS.gene042246:intron 40.0%
AGAAGGTAAAGAAACCTGGT+AGG + chr8.2:3286671-3286690 None:intergenic 40.0%
AGTCAAACTTCATGATCAGG+TGG + chr8.2:3288537-3288556 None:intergenic 40.0%
ATCATTCAGCATGAACTGGT+AGG - chr8.2:3288274-3288293 MS.gene042246:CDS 40.0%
ATCTGTCGTCAAGTTCTTGA+GGG + chr8.2:3287604-3287623 None:intergenic 40.0%
ATTGTACCTGTCCTTCACAT+AGG + chr8.2:3288983-3289002 None:intergenic 40.0%
CAAGAACTTGACGACAGATA+TGG - chr8.2:3287605-3287624 MS.gene042246:intron 40.0%
CAGTAATCCAGAACATGACA+CGG - chr8.2:3289513-3289532 MS.gene042246:CDS 40.0%
CCAAATCTCCAAGTTTCACT+TGG - chr8.2:3287821-3287840 MS.gene042246:intron 40.0%
CCAAGTGAAACTTGGAGATT+TGG + chr8.2:3287824-3287843 None:intergenic 40.0%
CTATCAAAGTCAACAGCTAC+CGG - chr8.2:3287235-3287254 MS.gene042246:intron 40.0%
CTCAATCATTCAGCATGAAC+TGG - chr8.2:3288270-3288289 MS.gene042246:CDS 40.0%
CTCCAAAATTGTCAGCTAGT+TGG - chr8.2:3289455-3289474 MS.gene042246:intron 40.0%
CTGCAAGTATACAATTCGCA+GGG - chr8.2:3287543-3287562 MS.gene042246:CDS 40.0%
CTGGTCACTTAGATAATCTG+GGG - chr8.2:3289199-3289218 MS.gene042246:intron 40.0%
GACAAAGCAAAACTGAATCG+AGG - chr8.2:3288656-3288675 MS.gene042246:intron 40.0%
GACAACTTTGAGTGGCTATT+TGG - chr8.2:3289379-3289398 MS.gene042246:intron 40.0%
GATGTCTTCACTCATAAACC+AGG - chr8.2:3286805-3286824 MS.gene042246:intron 40.0%
GCAAATATGCTTAGAACCGT+AGG - chr8.2:3289565-3289584 MS.gene042246:CDS 40.0%
GTACTTAACTCTGTCACCAA+AGG + chr8.2:3287783-3287802 None:intergenic 40.0%
GTGAATTGACTAGAACACAC+AGG + chr8.2:3287351-3287370 None:intergenic 40.0%
GTTTCACTTGGTTACCGAAA+TGG - chr8.2:3287833-3287852 MS.gene042246:intron 40.0%
TATCTGTCGTCAAGTTCTTG+AGG + chr8.2:3287605-3287624 None:intergenic 40.0%
TCAGCTACCGAATTGCTAAA+CGG + chr8.2:3288230-3288249 None:intergenic 40.0%
TCCTCATTGTTCAATGTCCA+TGG - chr8.2:3288300-3288319 MS.gene042246:CDS 40.0%
TCTGCGTAGCAAAATCAACA+TGG + chr8.2:3289429-3289448 None:intergenic 40.0%
TGAGCTGTTCAATCTTGATC+TGG + chr8.2:3288396-3288415 None:intergenic 40.0%
TGGTCACTTAGATAATCTGG+GGG - chr8.2:3289200-3289219 MS.gene042246:intron 40.0%
TTCGGTAACCAAGTGAAACT+TGG + chr8.2:3287832-3287851 None:intergenic 40.0%
TTGCCCACGAAATTGAAAAC+CGG + chr8.2:3287257-3287276 None:intergenic 40.0%
TTGGTATAAACCCTCTGTTG+TGG + chr8.2:3288768-3288787 None:intergenic 40.0%
! ACAGTTTTCTTCATGCCTTG+TGG + chr8.2:3288958-3288977 None:intergenic 40.0%
! CAGTTTTCTTCATGCCTTGT+GGG + chr8.2:3288957-3288976 None:intergenic 40.0%
! CAGTTTTGCTTTGTCGTTAC+TGG + chr8.2:3288651-3288670 None:intergenic 40.0%
! GACTGGTCACTTAGATAATC+TGG - chr8.2:3289197-3289216 MS.gene042246:intron 40.0%
! TATTATGGGCTGCTACAAAG+GGG + chr8.2:3287925-3287944 None:intergenic 40.0%
! TTGGTGACAGAGTTAAGTAC+TGG - chr8.2:3287783-3287802 MS.gene042246:intron 40.0%
!! ATGATCAGGTGGATTGTCTA+CGG + chr8.2:3288526-3288545 None:intergenic 40.0%
!! ATGGTGGGTGTTTACCATTT+CGG + chr8.2:3287850-3287869 None:intergenic 40.0%
!! CCGAATGTTTTTGTAGGGTA+TGG - chr8.2:3289108-3289127 MS.gene042246:intron 40.0%
!! GTGTTGGTTATGTGGCTATA+GGG - chr8.2:3289315-3289334 MS.gene042246:intron 40.0%
!! TGTGTTGGTTATGTGGCTAT+AGG - chr8.2:3289314-3289333 MS.gene042246:intron 40.0%
!! TTACTTTTAACGCTGCATCC+AGG - chr8.2:3288154-3288173 MS.gene042246:intron 40.0%
!!! CTACCGGTTTTCAATTTCGT+GGG - chr8.2:3287251-3287270 MS.gene042246:intron 40.0%
AAAGTTGTCAAGCAAGGACC+AGG + chr8.2:3289368-3289387 None:intergenic 45.0%
AACCAGTTGCTCACTGTGAT+TGG + chr8.2:3287646-3287665 None:intergenic 45.0%
ACCAGTTGCTCACTGTGATT+GGG + chr8.2:3287645-3287664 None:intergenic 45.0%
AGCAGTGCCAAAGAGAAAGT+TGG + chr8.2:3286641-3286660 None:intergenic 45.0%
AGTGCTTACAAGCTCTCCAA+TGG + chr8.2:3288816-3288835 None:intergenic 45.0%
ATCGACGCTTTGCTACTCAA+AGG - chr8.2:3287452-3287471 MS.gene042246:CDS 45.0%
ATGACACGGATACGAGAAAC+TGG - chr8.2:3289527-3289546 MS.gene042246:CDS 45.0%
ATGGCAAAGGATTGAGTGAC+TGG - chr8.2:3286782-3286801 MS.gene042246:CDS 45.0%
ATGTGAGAGGATACTTTGCC+TGG - chr8.2:3289347-3289366 MS.gene042246:CDS 45.0%
CAAAAAGATGGTGTCCCCAT+TGG - chr8.2:3288797-3288816 MS.gene042246:intron 45.0%
CAAGTACCCAAAAGAGATGG+AGG - chr8.2:3288595-3288614 MS.gene042246:intron 45.0%
CATGCTGCTACAAAGTTGTG+AGG + chr8.2:3288015-3288034 None:intergenic 45.0%
CCACTCAAAGTTGTCAAGCA+AGG + chr8.2:3289374-3289393 None:intergenic 45.0%
CCTGCAAGTATACAATTCGC+AGG - chr8.2:3287542-3287561 MS.gene042246:CDS 45.0%
CCTGCGAATTGTATACTTGC+AGG + chr8.2:3287545-3287564 None:intergenic 45.0%
CCTTGCTTGACAACTTTGAG+TGG - chr8.2:3289371-3289390 MS.gene042246:CDS 45.0%
CGCTTTGCTACTCAAAGGTT+TGG - chr8.2:3287457-3287476 MS.gene042246:CDS 45.0%
CTGTGAGCAGAAGGTAGATT+TGG - chr8.2:3287389-3287408 MS.gene042246:CDS 45.0%
CTGTTACCTATGTGAAGGAC+AGG - chr8.2:3288974-3288993 MS.gene042246:intron 45.0%
GAACTTGACGACAGATATGG+AGG - chr8.2:3287608-3287627 MS.gene042246:intron 45.0%
GCCATGGACATTGAACAATG+AGG + chr8.2:3288304-3288323 None:intergenic 45.0%
GCTTACTTGAGTGATGGCAA+AGG - chr8.2:3286769-3286788 MS.gene042246:CDS 45.0%
GTATAAACCCTCTGTTGTGG+AGG + chr8.2:3288765-3288784 None:intergenic 45.0%
GTGCCAAAGAGAAAGTTGGA+TGG + chr8.2:3286637-3286656 None:intergenic 45.0%
GTGCTTACAAGCTCTCCAAT+GGG + chr8.2:3288815-3288834 None:intergenic 45.0%
TGCTTACAAGCTCTCCAATG+GGG + chr8.2:3288814-3288833 None:intergenic 45.0%
TGGCAAAGGATTGAGTGACT+GGG - chr8.2:3286783-3286802 MS.gene042246:CDS 45.0%
TGGCTCAATGTTTACCCACA+AGG - chr8.2:3288940-3288959 MS.gene042246:intron 45.0%
TGGTTATGTGGCTATAGGGA+AGG - chr8.2:3289319-3289338 MS.gene042246:intron 45.0%
TTGACGACAGATATGGAGGT+TGG - chr8.2:3287612-3287631 MS.gene042246:intron 45.0%
TTGCAATGACTGTGAGCAGA+AGG - chr8.2:3287380-3287399 MS.gene042246:CDS 45.0%
TTTGGAGAAGTCAACTTGGC+TGG - chr8.2:3287407-3287426 MS.gene042246:CDS 45.0%
! TGAGAATGCTCCAAGAGCAT+AGG + chr8.2:3286584-3286603 None:intergenic 45.0%
! TGGAGCATTCTCATTCTCAG+AGG - chr8.2:3286591-3286610 MS.gene042246:CDS 45.0%
!! ATAATCTGGGGGCGTCAATA+AGG - chr8.2:3289211-3289230 MS.gene042246:intron 45.0%
!! CAGCTATTTTACGTGTGACC+AGG + chr8.2:3289288-3289307 None:intergenic 45.0%
!! GAAGGTGCTTACTTGAGTGA+TGG - chr8.2:3286763-3286782 MS.gene042246:CDS 45.0%
!!! GCTACCGGTTTTCAATTTCG+TGG - chr8.2:3287250-3287269 MS.gene042246:intron 45.0%
ACACCTCTTGTTCGTCTCAC+AGG + chr8.2:3287503-3287522 None:intergenic 50.0%
CAACTGCAGCTGCATGTGAT+AGG + chr8.2:3287952-3287971 None:intergenic 50.0%
CAAGGAACCTCCACAACAGA+GGG - chr8.2:3288755-3288774 MS.gene042246:intron 50.0%
CCAGTTGCTCACTGTGATTG+GGG + chr8.2:3287644-3287663 None:intergenic 50.0%
CGGCAAGTACCCAAAAGAGA+TGG - chr8.2:3288592-3288611 MS.gene042246:intron 50.0%
CTCGTATCCGTGTCATGTTC+TGG + chr8.2:3289523-3289542 None:intergenic 50.0%
CTTAGAACCGTAGGCTCAGA+GGG - chr8.2:3289574-3289593 MS.gene042246:CDS 50.0%
GCATTGTCGTACACGTTGAC+TGG - chr8.2:3288198-3288217 MS.gene042246:CDS 50.0%
GGGTACTTGCCGAAGAAGAT+TGG + chr8.2:3288584-3288603 None:intergenic 50.0%
TAGCGAGGGAGATTCAGAGA+AGG - chr8.2:3287898-3287917 MS.gene042246:CDS 50.0%
TCAATGTGTGAGTCTGGGCA+AGG - chr8.2:3288737-3288756 MS.gene042246:CDS 50.0%
TCTACTACCCTCTGAGCCTA+CGG + chr8.2:3289584-3289603 None:intergenic 50.0%
TTCGTCTCACAGGCAGTAGA+TGG + chr8.2:3287493-3287512 None:intergenic 50.0%
!! AAGATTGGGTTGGACGTGCA+AGG + chr8.2:3288885-3288904 None:intergenic 50.0%
AATTTGCGGGAGCAGCGACA+TGG + chr8.2:3287869-3287888 None:intergenic 55.0%
AGGGAAGGAGCAGATGTGAG+AGG - chr8.2:3289334-3289353 MS.gene042246:CDS 55.0%
CACTGCTTCTTCTGCCTACC+AGG - chr8.2:3286654-3286673 MS.gene042246:CDS 55.0%
CCCCAATCACAGTGAGCAAC+TGG - chr8.2:3287641-3287660 MS.gene042246:intron 55.0%
CTGCCTGTGAGACGAACAAG+AGG - chr8.2:3287497-3287516 MS.gene042246:CDS 55.0%
GCAAGGAACCTCCACAACAG+AGG - chr8.2:3288754-3288773 MS.gene042246:intron 55.0%
GCTGAGCAGGGAGGACAAAT+TGG - chr8.2:3288176-3288195 MS.gene042246:CDS 55.0%
GCTTAGAACCGTAGGCTCAG+AGG - chr8.2:3289573-3289592 MS.gene042246:CDS 55.0%
GGTAGAAGTCGAACGAGCCA+TGG + chr8.2:3288320-3288339 None:intergenic 55.0%
TGTCGCTGCTCCCGCAAATT+TGG - chr8.2:3287869-3287888 MS.gene042246:CDS 55.0%
TTTGTCCTCCCTGCTCAGCC+TGG + chr8.2:3288175-3288194 None:intergenic 60.0%
ACGCTGCATCCAGGCTGAGC+AGG - chr8.2:3288163-3288182 MS.gene042246:CDS 65.0%
CGCTGCATCCAGGCTGAGCA+GGG - chr8.2:3288164-3288183 MS.gene042246:CDS 65.0%
TGCATCCAGGCTGAGCAGGG+AGG - chr8.2:3288167-3288186 MS.gene042246:CDS 65.0%
TGCGGGAGCAGCGACATGGT+GGG + chr8.2:3287865-3287884 None:intergenic 65.0%
TTGCGGGAGCAGCGACATGG+TGG + chr8.2:3287866-3287885 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 3286535 3289621 3286535 ID=MS.gene042246
chr8.2 mRNA 3286535 3289621 3286535 ID=MS.gene042246.t1;Parent=MS.gene042246
chr8.2 exon 3289481 3289621 3289481 ID=MS.gene042246.t1.exon1;Parent=MS.gene042246.t1
chr8.2 CDS 3289481 3289621 3289481 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3289330 3289396 3289330 ID=MS.gene042246.t1.exon2;Parent=MS.gene042246.t1
chr8.2 CDS 3289330 3289396 3289330 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3289157 3289215 3289157 ID=MS.gene042246.t1.exon3;Parent=MS.gene042246.t1
chr8.2 CDS 3289157 3289215 3289157 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3288868 3288943 3288868 ID=MS.gene042246.t1.exon4;Parent=MS.gene042246.t1
chr8.2 CDS 3288868 3288943 3288868 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3288683 3288757 3288683 ID=MS.gene042246.t1.exon5;Parent=MS.gene042246.t1
chr8.2 CDS 3288683 3288757 3288683 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3288505 3288592 3288505 ID=MS.gene042246.t1.exon6;Parent=MS.gene042246.t1
chr8.2 CDS 3288505 3288592 3288505 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3288162 3288414 3288162 ID=MS.gene042246.t1.exon7;Parent=MS.gene042246.t1
chr8.2 CDS 3288162 3288414 3288162 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3287865 3287980 3287865 ID=MS.gene042246.t1.exon8;Parent=MS.gene042246.t1
chr8.2 CDS 3287865 3287980 3287865 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3287330 3287585 3287330 ID=MS.gene042246.t1.exon9;Parent=MS.gene042246.t1
chr8.2 CDS 3287330 3287585 3287330 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3287126 3287228 3287126 ID=MS.gene042246.t1.exon10;Parent=MS.gene042246.t1
chr8.2 CDS 3287126 3287228 3287126 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3286924 3287032 3286924 ID=MS.gene042246.t1.exon11;Parent=MS.gene042246.t1
chr8.2 CDS 3286924 3287032 3286924 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
chr8.2 exon 3286535 3286820 3286535 ID=MS.gene042246.t1.exon12;Parent=MS.gene042246.t1
chr8.2 CDS 3286535 3286820 3286535 ID=cds.MS.gene042246.t1;Parent=MS.gene042246.t1
Gene Sequence

>MS.gene042246

AAAGCAGTATCTATGGAGATACAACTACTCTTTTTCTTATTCACTACCTATGCTCTTGGAGCATTCTCATTCTCAGAGGAGTTTGATCATTATCCTTTTCCATCCAACTTTCTCTTTGGCACTGCTTCTTCTGCCTACCAGGTTTCTTTACCTTCTTCATGTTTATCTCCTAAAATCTTCATTATTTTAATTAATCATGGCTGATTATTAAACTTAATATTATAGTATGAAGGTGCTTACTTGAGTGATGGCAAAGGATTGAGTGACTGGGATGTCTTCACTCATAAACCAGGTCATGATAACAACATTTCTATGTCATCTAGACATCCATTTTTCATACTTGAATACCTTCATTCATTCAATCACCTGAGTTGCGTAATTACATAATAACATATATTTTTTTCAGGTAGTACTGATGATGGAAGTAACGGTGATGTTACTGTTGATCAATATCATCGGTATCTGGTACACATCATAATACTATTTTTTGGTGAATCATCACAATACTTTTAAGTTCCTCATAATCAAAATCCAATTTAGTTTAAGAGGTTACAACCTTAACAAGTGTTGTGTCAATACTAGAATTTTAGACTTGTCGAGAAAGTATGTGTACCTTATCTACTTTAACTAATTACACCCATTATATATGGTCTAAATGTCAATTTGTAATAAAAACAGGAGGATGTAGATTTAATGGAAGCTATCAAAGTCAACAGCTACCGGTTTTCAATTTCGTGGGCAAGAATTCTACCAAGTACGCATCTTGATTTAACATAATCTCAGTGATTTCAACTAATTAGCAAATATTAAGTACCTGTGTGTTCTAGTCAATTCACAAGCAGAATTTGCAATGACTGTGAGCAGAAGGTAGATTTGGAGAAGTCAACTTGGCTGGTATTGACTACTATAATAGGCTTATCGACGCTTTGCTACTCAAAGGTTTGGTTTCAATCTTCCATCTACTGCCTGTGAGACGAACAAGAGGTGTCACTGTTCGATTAGCTTAACCTGCAAGTATACAATTCGCAGGGATCCAACCGTTTGTTACATTGTTTCACTTTGATTTCCCTCAAGAACTTGACGACAGATATGGAGGTTGGCTAAGTCCCCAATCACAGTGAGCAACTGGTTCTACAATTCAATTTGCTCATACTTCACTTCCTTTGTCATACTTTACCAGCATTATAATGTATTTTGACATGTACAGGGAAGATTTTGTATTATTCGCAGACATATGTTTTAAATCCTTTGGTGACAGAGTTAAGTACTGGACCACATTCAATGAACCAAATCTCCAAGTTTCACTTGGTTACCGAAATGGTAAACACCCACCATGTCGCTGCTCCCGCAAATTTGGAAATTGTAGCGAGGGAGATTCAGAGAAGGACCCCTTTGTAGCAGCCCATAATATTATCCTATCACATGCAGCTGCAGTTGATATTTATAGAAACAAATACCAGGTAATATAGTAAAAAGACCTCACAACTTTGTAGCAGCATGCTAAGGAATCAAATTATTTCTATTTAAGCTAATAAAAAAATAATTATGATGCTAGTTTTACAAATCAAAGTGAAAAGTAAGTATGATTGAACTCTCATTCGAAACATTGTAAACATGATTTACTTTTAACGCTGCATCCAGGCTGAGCAGGGAGGACAAATTGGCATTGTCGTACACGTTGACTGGTTTGAACCGTTTAGCAATTCGGTAGCTGATAAATTAGCTGCTGAAAGAGCTCAATCATTCAGCATGAACTGGTAGGATTTCCTCATTGTTCAATGTCCATGGCTCGTTCGACTTCTACCATGCAAAAGTTTGATTTGGATTTGTTCTACTCACATAGTCACATTTGCAACTGCCAGATCAAGATTGAACAGCTCACTTTTGACTTCATATTTTGGCCTGATTTACTAAAGTCAGAGTATGAGACTGAAATCTTGATCAAATGGTTCAAATCATGTGATTGGACTCAATGCATGATTCTCTAACCGTAGACAATCCACCTGATCATGAAGTTTGACTCTATAATAATGCAGGATCTTGGATCCAATCTTCTTCGGCAAGTACCCAAAAGAGATGGAGGTGATTTTAGGAAGTACATTACCCAAATTTTCCAGTAACGACAAAGCAAAACTGAATCGAGGACTCGATTTCATTGGCATCAATCATTATGCAGGTTACTATGCTAGAGACTGCATATCATCAATGTGTGAGTCTGGGCAAGGAACCTCCACAACAGAGGGTTTATACCAACAAACTGCACAAAAAGATGGTGTCCCCATTGGAGAGCTTGTAAGCACTTCATCCTTTTGATGATTCCATTAGTTACATTTTTATTTATCGTTAACCTTGCACGTCCAACCCAATCTTGAAAGTTGTATTGTTATGTGTAGACTCCATTTGATTGGCTCAATGTTTACCCACAAGGCATGAAGAAAACTGTTACCTATGTGAAGGACAGGTACAATAACACTCCAATGTTCATTACTGAGAATGGTAAGTAAAGAAACACATTGAAGTTGAACCATTTTCATTGAATTTCAACCATTATTAGTCTCTTACACAGACTCTATCCGAATGTTTTTGTAGGGTATGGCAATTTGTATGATCCAAATAACACCAAGGAAGAATGTCTTAATGATATTAAAAGAATAAACTACATGACTGGTCACTTAGATAATCTGGGGGCGTCAATAAGGTAAGAGTCCACAAAAACCGAATAAACATCAAAGTTATCGATATATGGTTTACCTGGTCACACGTAAAATAGCTGAGTATTTGTGTTGGTTATGTGGCTATAGGGAAGGAGCAGATGTGAGAGGATACTTTGCCTGGTCCTTGCTTGACAACTTTGAGTGGCTATTTGGTTTTACAGTGAAATTTGGACTTTACCATGTTGATTTTGCTACGCAGAAGAGAACTCCAAAATTGTCAGCTAGTTGGTACAAACATTTCATTGCAAAACATAAAACCGAAAGCAGTAATCCAGAACATGACACGGATACGAGAAACTGGAACAAACAATTCAAGGCAAATATGCTTAGAACCGTAGGCTCAGAGGGTAGTAGAATAAAAAACTTGGATTAA
Protein sequence

>MS.gene042246.t1

KAVSMEIQLLFFLFTTYALGAFSFSEEFDHYPFPSNFLFGTASSAYQYEGAYLSDGKGLSDWDVFTHKPGSTDDGSNGDVTVDQYHRYLEDVDLMEAIKVNSYRFSISWARILPKGRFGEVNLAGIDYYNRLIDALLLKGIQPFVTLFHFDFPQELDDRYGGWLSPQSQEDFVLFADICFKSFGDRVKYWTTFNEPNLQVSLGYRNGKHPPCRCSRKFGNCSEGDSEKDPFVAAHNIILSHAAAVDIYRNKYQAEQGGQIGIVVHVDWFEPFSNSVADKLAAERAQSFSMNWILDPIFFGKYPKEMEVILGSTLPKFSSNDKAKLNRGLDFIGINHYAGYYARDCISSMCESGQGTSTTEGLYQQTAQKDGVPIGELTPFDWLNVYPQGMKKTVTYVKDRYNNTPMFITENGYGNLYDPNNTKEECLNDIKRINYMTGHLDNLGASIREGADVRGYFAWSLLDNFEWLFGFTVKFGLYHVDFATQKRTPKLSASWYKHFIAKHKTESSNPEHDTDTRNWNKQFKANMLRTVGSEGSRIKNLD