AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012612.t1 MTR_4g131800 93.866 538 32 1 1 538 493 1029 0.0 1068
MS.gene012612.t1 MTR_2g022760 72.421 504 137 2 1 502 12 515 0.0 771
MS.gene012612.t1 MTR_4g131810 70.798 476 136 2 28 500 32 507 0.0 718
MS.gene012612.t1 MTR_2g022710 63.655 498 179 1 5 500 14 511 0.0 672
MS.gene012612.t1 MTR_2g022760 74.515 412 105 0 91 502 1 412 0.0 657
MS.gene012612.t1 MTR_2g022710 63.348 442 160 1 5 444 14 455 0.0 588
MS.gene012612.t1 MTR_2g022710 63.348 442 160 1 5 444 14 455 0.0 587
MS.gene012612.t1 MTR_2g022710 64.390 410 146 0 91 500 1 410 0.0 567
MS.gene012612.t1 MTR_2g022710 65.517 406 138 1 5 408 14 419 0.0 559
MS.gene012612.t1 MTR_2g079580 49.621 528 257 3 1 527 8 527 0.0 558
MS.gene012612.t1 MTR_2g079550 48.851 522 258 3 1 521 6 519 0.0 546
MS.gene012612.t1 MTR_2g022710 64.721 394 137 1 5 396 14 407 0.0 535
MS.gene012612.t1 MTR_2g022710 65.405 370 126 1 5 372 14 383 1.01e-177 507
MS.gene012612.t1 MTR_4g083000 48.560 486 241 5 20 500 24 505 5.67e-164 475
MS.gene012612.t1 MTR_2g079580 52.567 409 192 2 1 408 8 415 7.20e-163 469
MS.gene012612.t1 MTR_2g098520 47.789 475 242 5 29 499 39 511 4.29e-160 466
MS.gene012612.t1 MTR_4g066630 49.260 473 234 5 29 497 44 514 9.56e-159 462
MS.gene012612.t1 MTR_2g098540 48.211 475 240 5 29 499 36 508 1.09e-158 462
MS.gene012612.t1 MTR_4g066210 48.954 478 238 5 29 502 48 523 1.70e-158 462
MS.gene012612.t1 MTR_0110s0040 47.890 474 238 5 29 500 48 514 4.85e-158 461
MS.gene012612.t1 MTR_6g078330 47.119 486 251 6 20 501 33 516 6.53e-158 461
MS.gene012612.t1 MTR_6g078450 48.421 475 237 7 29 498 41 512 1.73e-157 459
MS.gene012612.t1 MTR_0110s0030 47.789 475 237 5 29 500 48 514 1.17e-156 457
MS.gene012612.t1 MTR_4g066240 48.125 480 243 5 23 498 35 512 3.36e-156 456
MS.gene012612.t1 MTR_2g098790 45.833 504 263 6 3 498 13 514 7.11e-156 455
MS.gene012612.t1 MTR_4g066580 47.789 475 242 5 29 499 44 516 1.24e-155 455
MS.gene012612.t1 MTR_3g026280 46.450 493 253 6 8 496 6 491 1.42e-155 453
MS.gene012612.t1 MTR_6g078380 49.057 477 235 8 29 500 41 514 1.46e-155 454
MS.gene012612.t1 MTR_4g081530 47.581 496 250 6 5 496 9 498 7.92e-155 452
MS.gene012612.t1 MTR_4g066240 48.025 481 243 6 23 498 35 513 2.37e-154 451
MS.gene012612.t1 MTR_4g066590 47.780 473 241 5 29 497 38 508 1.54e-153 449
MS.gene012612.t1 MTR_5g044000 46.200 500 240 8 23 496 24 520 3.15e-153 449
MS.gene012612.t1 MTR_4g023000 44.112 501 270 5 1 498 1 494 8.84e-152 444
MS.gene012612.t1 MTR_3g028720 46.316 475 249 5 29 499 43 515 8.71e-151 442
MS.gene012612.t1 MTR_2g098540 47.505 461 236 5 43 499 6 464 1.64e-150 439
MS.gene012612.t1 MTR_4g066640 47.170 477 240 7 29 499 44 514 3.88e-148 435
MS.gene012612.t1 MTR_3g026400 46.458 480 251 4 23 500 36 511 4.92e-148 435
MS.gene012612.t1 MTR_5g071520 47.826 483 237 6 29 498 44 524 9.74e-148 434
MS.gene012612.t1 MTR_3g026620 46.791 483 251 4 20 500 34 512 6.79e-147 432
MS.gene012612.t1 MTR_3g033790 45.228 482 248 5 17 496 12 479 9.44e-145 426
MS.gene012612.t1 MTR_4g066340 48.380 432 218 4 70 498 10 439 9.88e-145 424
MS.gene012612.t1 MTR_4g066330 46.512 473 225 5 29 498 46 493 2.68e-144 425
MS.gene012612.t1 MTR_3g033810 46.170 483 233 6 22 496 19 482 5.13e-144 424
MS.gene012612.t1 MTR_4g066280 45.570 474 230 5 29 499 46 494 3.17e-143 422
MS.gene012612.t1 MTR_3g026400 45.745 470 247 5 33 500 17 480 6.17e-141 416
MS.gene012612.t1 MTR_2g043200 46.234 478 221 7 29 498 70 519 1.88e-137 408
MS.gene012612.t1 MTR_4g066630 48.804 418 209 4 29 443 44 459 1.04e-136 404
MS.gene012612.t1 MTR_4g083000 46.988 415 211 5 91 500 1 411 1.84e-133 394
MS.gene012612.t1 MTR_6g078450 47.857 420 212 6 29 444 41 457 3.17e-133 395
MS.gene012612.t1 MTR_6g078330 46.135 414 218 5 91 501 1 412 1.52e-132 392
MS.gene012612.t1 MTR_4g066630 49.608 383 188 4 29 408 44 424 3.40e-130 387
MS.gene012612.t1 MTR_3g028720 45.694 418 222 4 29 443 43 458 2.64e-128 382
MS.gene012612.t1 MTR_4g015420 42.245 490 245 8 21 498 62 525 6.32e-128 384
MS.gene012612.t1 MTR_4g015460 42.052 497 251 7 15 500 33 503 8.79e-128 383
MS.gene012612.t1 MTR_7g068910 39.468 489 280 5 18 503 25 500 2.55e-127 382
MS.gene012612.t1 MTR_4g016920 40.619 485 258 6 29 503 32 496 6.39e-127 381
MS.gene012612.t1 MTR_4g066580 48.042 383 194 4 29 408 44 424 9.02e-127 377
MS.gene012612.t1 MTR_7g068910 38.677 499 280 6 18 503 25 510 3.20e-124 374
MS.gene012612.t1 MTR_4g066240 47.301 389 200 4 23 408 35 421 6.68e-123 368
MS.gene012612.t1 MTR_3g028720 46.736 383 199 4 29 408 43 423 1.38e-122 367
MS.gene012612.t1 MTR_6g078330 44.776 402 215 6 103 501 15 412 7.07e-122 365
MS.gene012612.t1 MTR_5g068740 39.357 498 282 9 3 496 7 488 1.19e-121 367
MS.gene012612.t1 MTR_1g088610 38.966 503 276 9 3 496 7 487 5.74e-121 370
MS.gene012612.t1 MTR_1g088610 35.537 121 70 2 383 501 503 617 7.98e-16 80.9
MS.gene012612.t1 MTR_4g067040 47.978 371 188 4 29 396 39 407 4.19e-119 357
MS.gene012612.t1 MTR_4g066630 52.848 316 146 3 29 341 44 359 3.45e-115 346
MS.gene012612.t1 MTR_7g033860 39.535 473 269 8 29 497 53 512 2.96e-114 348
MS.gene012612.t1 MTR_4g067040 49.422 346 170 4 29 371 39 382 4.78e-114 343
MS.gene012612.t1 MTR_0110s0040 50.641 312 153 1 29 340 48 358 4.83e-114 344
MS.gene012612.t1 MTR_0108s0030 38.445 476 252 9 29 497 8 449 4.26e-112 341
MS.gene012612.t1 MTR_3g026400 50.629 318 155 2 23 339 36 352 2.21e-110 333
MS.gene012612.t1 MTR_6g078330 49.846 325 160 3 20 341 33 357 6.10e-109 330
MS.gene012612.t1 MTR_3g028720 46.821 346 179 4 29 371 43 386 1.16e-108 330
MS.gene012612.t1 MTR_4g066640 48.563 348 168 6 29 371 44 385 2.98e-108 328
MS.gene012612.t1 MTR_7g068900 38.824 425 239 7 85 503 16 425 5.95e-105 323
MS.gene012612.t1 MTR_4g016920 39.243 423 227 6 91 503 1 403 2.21e-104 320
MS.gene012612.t1 MTR_7g051510 36.907 485 268 10 29 502 80 537 7.07e-101 315
MS.gene012612.t1 MTR_1g088630 37.581 463 245 10 43 501 14 436 3.93e-99 308
MS.gene012612.t1 MTR_7g051610 35.892 482 267 11 29 497 80 532 2.78e-95 300
MS.gene012612.t1 MTR_7g051650 36.688 477 271 9 29 497 80 533 3.40e-94 297
MS.gene012612.t1 MTR_7g051650 36.268 477 269 9 29 497 80 529 7.49e-93 294
MS.gene012612.t1 MTR_7g056747 37.260 416 230 8 86 497 10 398 2.02e-84 268
MS.gene012612.t1 MTR_1g088630 41.765 340 168 6 3 340 7 318 4.96e-83 263
MS.gene012612.t1 MTR_0110s0020 53.363 223 103 1 29 251 48 269 1.13e-81 258
MS.gene012612.t1 MTR_1g088630 45.455 286 150 4 3 286 7 288 4.23e-78 248
MS.gene012612.t1 MTR_4g016920 45.312 256 138 2 91 345 1 255 3.48e-76 243
MS.gene012612.t1 MTR_4g122980 25.785 446 244 15 87 521 183 552 1.45e-30 126
MS.gene012612.t1 MTR_2g022730 45.679 81 42 1 374 452 24 104 1.11e-16 79.3
MS.gene012612.t1 MTR_8g038650 36.792 106 66 1 240 345 51 155 3.25e-16 76.6
MS.gene012612.t1 MTR_5g069350 33.125 160 55 6 355 498 66 189 5.72e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012612.t1 AT1G61820 61.426 477 182 2 25 499 31 507 0.0 637
MS.gene012612.t1 AT1G61810 61.845 477 180 2 25 499 34 510 0.0 636
MS.gene012612.t1 AT4G21760 60.752 479 183 2 27 505 57 530 0.0 633
MS.gene012612.t1 AT1G61810 61.688 462 175 2 25 484 34 495 0.0 614
MS.gene012612.t1 AT4G21760 59.499 479 179 3 27 505 57 520 0.0 613
MS.gene012612.t1 AT1G61810 60.732 410 160 1 91 499 1 410 0.0 541
MS.gene012612.t1 AT1G61810 61.917 386 145 2 25 408 34 419 5.22e-179 511
MS.gene012612.t1 AT1G61820 59.239 368 149 1 133 499 1 368 3.87e-167 479
MS.gene012612.t1 AT1G26560 48.734 474 233 6 29 496 37 506 3.14e-160 466
MS.gene012612.t1 AT3G18080 46.862 478 236 5 29 499 44 510 1.14e-156 457
MS.gene012612.t1 AT5G54570 47.401 481 246 6 21 496 27 505 9.65e-152 445
MS.gene012612.t1 AT3G18070 45.094 479 243 6 29 500 35 500 5.45e-150 439
MS.gene012612.t1 AT2G44450 46.653 478 244 6 29 502 36 506 1.86e-149 438
MS.gene012612.t1 AT3G18070 44.885 479 238 6 29 500 35 494 6.46e-149 437
MS.gene012612.t1 AT2G44480 46.154 481 254 4 20 497 31 509 9.49e-149 437
MS.gene012612.t1 AT2G44480 46.154 481 254 4 20 497 62 540 2.88e-148 437
MS.gene012612.t1 AT5G44640 45.702 477 247 7 29 500 36 505 3.71e-147 432
MS.gene012612.t1 AT5G42260 46.695 469 238 7 29 492 36 497 4.31e-146 430
MS.gene012612.t1 AT3G60130 45.666 473 245 7 29 496 35 500 1.98e-144 426
MS.gene012612.t1 AT2G25630 45.073 477 233 8 29 500 35 487 4.46e-138 409
MS.gene012612.t1 AT5G36890 45.435 471 242 6 29 496 21 479 1.36e-137 407
MS.gene012612.t1 AT5G36890 45.435 471 242 6 29 496 21 479 1.41e-137 407
MS.gene012612.t1 AT3G60140 41.794 524 297 7 5 521 7 529 8.16e-137 409
MS.gene012612.t1 AT5G24550 43.125 480 268 5 24 498 32 511 8.05e-135 402
MS.gene012612.t1 AT4G27830 41.317 501 272 8 1 496 1 484 5.66e-134 399
MS.gene012612.t1 AT1G02850 43.100 471 249 7 29 496 31 485 9.31e-133 395
MS.gene012612.t1 AT4G27820 42.593 486 254 8 17 496 16 482 1.02e-132 395
MS.gene012612.t1 AT5G54570 46.838 427 222 4 21 444 27 451 1.79e-131 390
MS.gene012612.t1 AT1G61810 66.792 265 87 1 25 288 34 298 1.58e-130 383
MS.gene012612.t1 AT5G24540 43.333 480 267 5 24 498 32 511 4.80e-129 387
MS.gene012612.t1 AT2G44470 39.922 516 303 7 21 531 26 539 1.71e-128 387
MS.gene012612.t1 AT1G02850 41.296 494 248 8 29 496 31 508 5.39e-128 384
MS.gene012612.t1 AT2G44480 45.721 409 218 3 91 497 1 407 1.81e-127 379
MS.gene012612.t1 AT2G44460 42.659 504 279 8 21 519 26 524 2.20e-126 382
MS.gene012612.t1 AT1G02850 41.212 495 248 9 29 496 31 509 4.66e-126 379
MS.gene012612.t1 AT1G47600 42.116 482 263 8 21 498 42 511 1.13e-125 378
MS.gene012612.t1 AT1G47600 42.116 482 262 8 21 498 42 510 2.06e-125 377
MS.gene012612.t1 AT3G60130 44.819 415 218 6 86 496 41 448 1.16e-124 373
MS.gene012612.t1 AT4G22100 40.421 475 267 6 29 501 27 487 4.03e-124 374
MS.gene012612.t1 AT5G54570 45.610 410 217 5 91 496 1 408 6.47e-124 370
MS.gene012612.t1 AT1G51470 41.701 482 265 8 21 498 42 511 1.65e-123 372
MS.gene012612.t1 AT1G60090 39.400 500 278 9 2 496 3 482 7.15e-123 370
MS.gene012612.t1 AT1G60090 38.767 503 284 9 2 496 3 489 3.00e-122 369
MS.gene012612.t1 AT2G32860 41.250 480 273 8 29 501 99 576 2.03e-120 368
MS.gene012612.t1 AT1G02850 40.764 471 233 8 29 496 31 458 3.75e-120 362
MS.gene012612.t1 AT3G62750 39.419 482 266 9 17 496 16 473 3.04e-119 361
MS.gene012612.t1 AT2G32860 41.458 480 271 9 29 501 99 575 3.95e-119 364
MS.gene012612.t1 AT3G62750 39.419 482 266 9 17 496 42 499 8.63e-119 360
MS.gene012612.t1 AT3G60130 43.855 415 211 7 86 496 41 437 2.93e-118 357
MS.gene012612.t1 AT3G60120 39.918 486 285 7 18 498 8 491 8.23e-118 358
MS.gene012612.t1 AT2G44490 39.200 500 293 10 29 519 19 516 3.23e-117 358
MS.gene012612.t1 AT5G26000 41.532 496 267 10 24 507 38 522 4.65e-117 357
MS.gene012612.t1 AT3G21370 40.947 486 273 11 21 496 30 511 2.04e-116 354
MS.gene012612.t1 AT1G45191 36.926 501 291 8 4 501 10 488 1.36e-115 352
MS.gene012612.t1 AT5G25980 41.803 488 264 13 19 496 45 522 2.35e-115 352
MS.gene012612.t1 AT1G45191 36.978 503 294 7 4 501 10 494 1.86e-114 349
MS.gene012612.t1 AT1G45191 37.200 500 302 5 4 501 10 499 1.60e-113 347
MS.gene012612.t1 AT1G45191 36.811 508 305 5 4 501 10 511 3.06e-112 344
MS.gene012612.t1 AT3G62740 36.821 497 282 10 7 496 7 478 1.34e-111 341
MS.gene012612.t1 AT1G66280 39.832 477 275 8 29 498 41 512 1.09e-109 337
MS.gene012612.t1 AT1G66270 39.413 477 277 8 29 498 41 512 1.09e-109 337
MS.gene012612.t1 AT3G09260 38.716 483 289 7 21 498 32 512 3.09e-109 336
MS.gene012612.t1 AT3G18070 48.397 312 158 2 29 340 35 343 6.67e-109 330
MS.gene012612.t1 AT4G27830 40.146 411 226 6 91 496 1 396 7.88e-109 331
MS.gene012612.t1 AT1G75940 38.900 491 262 11 29 496 42 517 4.57e-108 333
MS.gene012612.t1 AT5G28510 38.650 489 286 8 21 498 36 521 2.28e-107 331
MS.gene012612.t1 AT4G27820 41.019 412 222 7 91 496 1 397 2.98e-107 327
MS.gene012612.t1 AT4G27820 41.019 412 222 7 91 496 1 397 2.98e-107 327
MS.gene012612.t1 AT1G52400 39.220 487 280 12 20 496 35 515 8.67e-107 330
MS.gene012612.t1 AT1G52400 39.220 487 280 12 20 496 35 515 8.67e-107 330
MS.gene012612.t1 AT1G66270 39.203 477 276 10 29 498 41 510 2.50e-106 328
MS.gene012612.t1 AT2G44470 39.437 426 254 4 21 443 26 450 2.78e-106 326
MS.gene012612.t1 AT5G24540 41.608 423 244 3 24 443 32 454 7.61e-106 325
MS.gene012612.t1 AT3G60140 41.032 407 236 4 5 408 7 412 1.35e-105 324
MS.gene012612.t1 AT1G02850 41.584 404 202 5 29 408 31 424 1.78e-104 320
MS.gene012612.t1 AT3G03640 36.210 533 315 11 1 513 1 528 2.88e-104 323
MS.gene012612.t1 AT2G44480 49.841 315 155 3 20 332 62 375 3.25e-102 313
MS.gene012612.t1 AT2G44450 43.094 362 197 4 143 502 1 355 2.70e-101 310
MS.gene012612.t1 AT5G25980 40.878 433 239 11 19 444 45 467 2.34e-98 306
MS.gene012612.t1 AT5G25980 40.878 433 239 11 19 444 45 467 2.34e-98 306
MS.gene012612.t1 AT5G26000 40.706 425 232 8 29 444 43 456 3.23e-97 303
MS.gene012612.t1 AT3G62750 37.674 430 244 8 17 446 42 447 3.91e-97 303
MS.gene012612.t1 AT3G62750 37.990 408 231 8 91 496 1 388 3.24e-96 298
MS.gene012612.t1 AT3G62750 37.990 408 231 8 91 496 1 388 3.24e-96 298
MS.gene012612.t1 AT1G60270 43.544 333 182 3 3 333 1 329 4.33e-95 295
MS.gene012612.t1 AT2G44470 45.171 321 173 3 21 338 26 346 2.20e-93 291
MS.gene012612.t1 AT3G18070 42.059 340 180 4 168 500 94 423 8.07e-93 290
MS.gene012612.t1 AT3G18070 55.357 56 25 0 29 84 35 90 2.05e-12 69.7
MS.gene012612.t1 AT3G62740 37.838 407 229 8 7 408 7 394 3.66e-92 288
MS.gene012612.t1 AT3G62750 42.901 324 172 4 17 340 16 326 1.03e-90 283
MS.gene012612.t1 AT3G62750 42.901 324 172 4 17 340 16 326 1.03e-90 283
MS.gene012612.t1 AT3G62750 42.901 324 172 4 17 340 42 352 1.79e-89 282
MS.gene012612.t1 AT1G45191 40.909 330 189 3 4 333 10 333 3.09e-89 280
MS.gene012612.t1 AT1G45191 40.909 330 189 3 4 333 10 333 3.78e-89 280
MS.gene012612.t1 AT1G52400 38.426 432 252 10 20 443 35 460 1.73e-88 280
MS.gene012612.t1 AT3G18070 41.875 320 169 4 188 500 2 311 8.67e-87 271
MS.gene012612.t1 AT2G44460 40.992 383 217 7 141 519 1 378 1.33e-83 266
MS.gene012612.t1 AT5G48375 36.364 418 199 9 52 462 54 411 5.84e-79 254
MS.gene012612.t1 AT2G44480 40.864 301 175 2 198 497 5 303 8.94e-78 247
MS.gene012612.t1 AT1G51490 43.408 311 160 9 32 338 28 326 4.43e-72 236
MS.gene012612.t1 AT1G60270 43.210 243 137 1 91 333 1 242 1.84e-70 228
MS.gene012612.t1 AT3G18070 41.296 247 132 2 168 408 94 333 3.32e-63 211
MS.gene012612.t1 AT3G18070 55.357 56 25 0 29 84 35 90 1.00e-12 70.1
MS.gene012612.t1 AT3G18070 40.969 227 121 2 188 408 2 221 4.69e-57 191
MS.gene012612.t1 AT5G16580 33.446 296 177 7 162 454 21 299 9.83e-47 165
MS.gene012612.t1 AT3G06510 25.935 401 218 14 86 477 159 489 1.98e-27 117
MS.gene012612.t1 AT3G06510 25.243 412 241 12 86 477 159 523 5.91e-27 115

Find 123 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTTCCTTGGTGTTATT+TGG 0.081941 8.1:+2150402 None:intergenic
TTTGTCGTTACTGGAAAATT+TGG 0.210997 8.1:+2150907 None:intergenic
TGTCGCTGCTCCCGCAAATT+TGG 0.214872 8.1:-2151677 MS.gene012612:CDS
TACCAACTAGCTGACAATTT+TGG 0.228855 8.1:+2150089 None:intergenic
AAAATCACCTCCATCTCTTT+TGG 0.232607 8.1:+2150944 None:intergenic
CTCGTATCCGTGTCATGTTC+TGG 0.251671 8.1:+2150026 None:intergenic
GACAACTTTGAGTGGCTATT+TGG 0.252310 8.1:-2150167 MS.gene012612:CDS
TTTCCATCCAACTTTCTCTT+TGG 0.260893 8.1:-2152915 MS.gene012612:CDS
ACAGGAGGATGTAGATTTAA+TGG 0.268522 8.1:-2152337 MS.gene012612:intron
CCAAGTGAAACTTGGAGATT+TGG 0.292516 8.1:+2151725 None:intergenic
CACTGCTTCTTCTGCCTACC+AGG 0.320999 8.1:-2152892 MS.gene012612:intron
GACTGGTCACTTAGATAATC+TGG 0.322076 8.1:-2150349 MS.gene012612:CDS
CTGGTATTGACTACTATAAT+AGG 0.334064 8.1:-2152120 MS.gene012612:CDS
GCTGAGCAGGGAGGACAAAT+TGG 0.348657 8.1:-2151370 MS.gene012612:CDS
ATGTTCTGGATTACTGCTTT+CGG 0.369526 8.1:+2150040 None:intergenic
CTGTGAGCAGAAGGTAGATT+TGG 0.371053 8.1:-2152157 MS.gene012612:intron
GTTTCACTTGGTTACCGAAA+TGG 0.373316 8.1:-2151713 MS.gene012612:CDS
TTATTCACTACCTATGCTCT+TGG 0.374400 8.1:-2152975 MS.gene012612:CDS
TTGTCGTTACTGGAAAATTT+GGG 0.378693 8.1:+2150908 None:intergenic
CGCTACAATTTCCAAATTTG+CGG 0.390612 8.1:+2151666 None:intergenic
ACCAGTTGCTCACTGTGATT+GGG 0.394203 8.1:+2151904 None:intergenic
AACCAGTTGCTCACTGTGAT+TGG 0.401532 8.1:+2151903 None:intergenic
GCTACAATTTCCAAATTTGC+GGG 0.406017 8.1:+2151667 None:intergenic
TGATCAATATCATCGGTATC+TGG 0.408911 8.1:-2152568 MS.gene012612:intron
CATGTGATAGGATAATATTA+TGG 0.409137 8.1:+2151609 None:intergenic
CAAGAACTTGACGACAGATA+TGG 0.410450 8.1:-2151941 MS.gene012612:CDS
TCTATAATAATGCAGGATCT+TGG 0.411513 8.1:-2150990 MS.gene012612:intron
CAACTGCAGCTGCATGTGAT+AGG 0.416110 8.1:+2151597 None:intergenic
ATGACACGGATACGAGAAAC+TGG 0.424883 8.1:-2150019 MS.gene012612:CDS
ATGGTGGGTGTTTACCATTT+CGG 0.426254 8.1:+2151699 None:intergenic
AATCGAGGACTCGATTTCAT+TGG 0.429047 8.1:-2150875 MS.gene012612:CDS
GGGTACTTGCCGAAGAAGAT+TGG 0.431182 8.1:+2150965 None:intergenic
AATATTATGGGCTGCTACAA+AGG 0.431696 8.1:+2151622 None:intergenic
TTCGGTAACCAAGTGAAACT+TGG 0.437487 8.1:+2151717 None:intergenic
GCATTGTCGTACACGTTGAC+TGG 0.438002 8.1:-2151348 MS.gene012612:CDS
GTTTGAACCGTTTAGCAATT+CGG 0.441412 8.1:-2151326 MS.gene012612:CDS
ATATCATCAATGTGTGAGTC+TGG 0.444978 8.1:-2150815 MS.gene012612:CDS
ATCTTGGATCCAATCTTCTT+CGG 0.447074 8.1:-2150974 MS.gene012612:CDS
ACGCTGCATCCAGGCTGAGC+AGG 0.461536 8.1:-2151383 MS.gene012612:intron
CCAATGTTCATTACTGAGAA+TGG 0.464727 8.1:-2150537 MS.gene012612:intron
ATCATTAAGACATTCTTCCT+TGG 0.465143 8.1:+2150392 None:intergenic
CTCAATCATTCAGCATGAAC+TGG 0.467873 8.1:-2151276 MS.gene012612:intron
ATGTGTAGACTCCATTTGAT+TGG 0.470062 8.1:-2150626 MS.gene012612:intron
CCAAATCTCCAAGTTTCACT+TGG 0.472557 8.1:-2151725 MS.gene012612:CDS
GTGCTTACAAGCTCTCCAAT+GGG 0.474734 8.1:+2150734 None:intergenic
ATTGGCATCAATCATTATGC+AGG 0.475815 8.1:-2150857 MS.gene012612:CDS
AAGAGAAAGTTGGATGGAAA+AGG 0.476077 8.1:+2152918 None:intergenic
ATATTATGGGCTGCTACAAA+GGG 0.484402 8.1:+2151623 None:intergenic
ATGTGATAGGATAATATTAT+GGG 0.491989 8.1:+2151610 None:intergenic
TAAACATTGAGCCAATCAAA+TGG 0.504017 8.1:+2150615 None:intergenic
TTTGGAGAAGTCAACTTGGC+TGG 0.504319 8.1:-2152139 MS.gene012612:CDS
ATCTGTCGTCAAGTTCTTGA+GGG 0.506725 8.1:+2151945 None:intergenic
AACTTAATATTATAGTATGA+AGG 0.507201 8.1:-2152801 MS.gene012612:intron
ATGTGAGAGGATACTTTGCC+TGG 0.508878 8.1:-2150199 MS.gene012612:CDS
ATGGCAAAGGATTGAGTGAC+TGG 0.510545 8.1:-2152764 MS.gene012612:CDS
TCAGCTACCGAATTGCTAAA+CGG 0.512445 8.1:+2151319 None:intergenic
ACTGGTCACTTAGATAATCT+GGG 0.513194 8.1:-2150348 MS.gene012612:CDS
CTATCAAAGTCAACAGCTAC+CGG 0.515390 8.1:-2152311 MS.gene012612:CDS
TTGGTGACAGAGTTAAGTAC+TGG 0.515563 8.1:-2151763 MS.gene012612:CDS
AAACTGGAACAAACAATTCA+AGG 0.521421 8.1:-2150003 MS.gene012612:CDS
AGCAGTGCCAAAGAGAAAGT+TGG 0.523449 8.1:+2152908 None:intergenic
TCTACTACCCTCTGAGCCTA+CGG 0.523808 8.1:+2149965 None:intergenic
CGCTGCATCCAGGCTGAGCA+GGG 0.527593 8.1:-2151382 MS.gene012612:intron
AAGTGAAACAATGTAACAAA+CGG 0.528983 8.1:+2151974 None:intergenic
CTCCAAAATTGTCAGCTAGT+TGG 0.530460 8.1:-2150091 MS.gene012612:CDS
TTGCCCACGAAATTGAAAAC+CGG 0.531948 8.1:+2152292 None:intergenic
GAGATTTGGTTCATTGAATG+TGG 0.532609 8.1:+2151739 None:intergenic
CTGTTACCTATGTGAAGGAC+AGG 0.533086 8.1:-2150572 MS.gene012612:CDS
CTTAGAACCGTAGGCTCAGA+GGG 0.534583 8.1:-2149972 MS.gene012612:CDS
CCTTGCTTGACAACTTTGAG+TGG 0.544158 8.1:-2150175 MS.gene012612:CDS
ATTGTACCTGTCCTTCACAT+AGG 0.545267 8.1:+2150566 None:intergenic
CCATTCTCAGTAATGAACAT+TGG 0.554982 8.1:+2150537 None:intergenic
AGTGCTTACAAGCTCTCCAA+TGG 0.557979 8.1:+2150733 None:intergenic
GTATAAACCCTCTGTTGTGG+AGG 0.558557 8.1:+2150784 None:intergenic
GAAACAATGTAACAAACGGT+TGG 0.558611 8.1:+2151978 None:intergenic
AAAAGAATAAACTACATGAC+TGG 0.562119 8.1:-2150366 MS.gene012612:CDS
TGAGAATGCTCCAAGAGCAT+AGG 0.565601 8.1:+2152965 None:intergenic
AAAGTTGTCAAGCAAGGACC+AGG 0.567557 8.1:+2150181 None:intergenic
GCAAATATGCTTAGAACCGT+AGG 0.568060 8.1:-2149981 MS.gene012612:CDS
AAATTTGGAAATTGTAGCGA+GGG 0.575693 8.1:-2151662 MS.gene012612:CDS
AGGGAAGGAGCAGATGTGAG+AGG 0.576362 8.1:-2150212 MS.gene012612:CDS
TTGACGACAGATATGGAGGT+TGG 0.586833 8.1:-2151934 MS.gene012612:CDS
TATCTGTCGTCAAGTTCTTG+AGG 0.589618 8.1:+2151944 None:intergenic
ATCGACGCTTTGCTACTCAA+AGG 0.594955 8.1:-2152094 MS.gene012612:intron
TGCGGGAGCAGCGACATGGT+GGG 0.596391 8.1:+2151684 None:intergenic
CAAGGAACCTCCACAACAGA+GGG 0.596892 8.1:-2150791 MS.gene012612:CDS
CGGCAAGTACCCAAAAGAGA+TGG 0.598644 8.1:-2150954 MS.gene012612:CDS
GAAAACTGTTACCTATGTGA+AGG 0.598748 8.1:-2150577 MS.gene012612:CDS
TTGCGGGAGCAGCGACATGG+TGG 0.599395 8.1:+2151683 None:intergenic
CCAGTTGCTCACTGTGATTG+GGG 0.602755 8.1:+2151905 None:intergenic
TAGATTTGGAGAAGTCAACT+TGG 0.607687 8.1:-2152143 MS.gene012612:CDS
TTGGTATAAACCCTCTGTTG+TGG 0.608835 8.1:+2150781 None:intergenic
TGGCTCAATGTTTACCCACA+AGG 0.615458 8.1:-2150606 MS.gene012612:CDS
GTGCCAAAGAGAAAGTTGGA+TGG 0.621854 8.1:+2152912 None:intergenic
AGAAGGTAAATAAACCTGGT+AGG 0.625475 8.1:+2152878 None:intergenic
TAGCGAGGGAGATTCAGAGA+AGG 0.625947 8.1:-2151648 MS.gene012612:CDS
AGTACTGATGATGGAAGTAA+CGG 0.629271 8.1:-2152603 MS.gene012612:CDS
GCTTAGAACCGTAGGCTCAG+AGG 0.630554 8.1:-2149973 MS.gene012612:CDS
CAGTAATCCAGAACATGACA+CGG 0.631088 8.1:-2150033 MS.gene012612:CDS
CCACTCAAAGTTGTCAAGCA+AGG 0.631883 8.1:+2150175 None:intergenic
TTACTGTTGATCAATATCAT+CGG 0.633059 8.1:-2152575 MS.gene012612:CDS
AATTTGCGGGAGCAGCGACA+TGG 0.635985 8.1:+2151680 None:intergenic
CTGGTCACTTAGATAATCTG+GGG 0.638340 8.1:-2150347 MS.gene012612:CDS
TCAATGTGTGAGTCTGGGCA+AGG 0.639903 8.1:-2150809 MS.gene012612:CDS
GTACTTAACTCTGTCACCAA+AGG 0.643194 8.1:+2151766 None:intergenic
TATCATCAATGTGTGAGTCT+GGG 0.645232 8.1:-2150814 MS.gene012612:CDS
CAAGTACCCAAAAGAGATGG+AGG 0.647849 8.1:-2150951 MS.gene012612:CDS
GAAGGTGCTTACTTGAGTGA+TGG 0.651168 8.1:-2152783 MS.gene012612:CDS
CAAATTTGGAAATTGTAGCG+AGG 0.653756 8.1:-2151663 MS.gene012612:CDS
GAACTTGACGACAGATATGG+AGG 0.657453 8.1:-2151938 MS.gene012612:CDS
TGGAGCATTCTCATTCTCAG+AGG 0.661583 8.1:-2152955 MS.gene012612:CDS
GCTTACTTGAGTGATGGCAA+AGG 0.664601 8.1:-2152777 MS.gene012612:CDS
TGCATCCAGGCTGAGCAGGG+AGG 0.666984 8.1:-2151379 MS.gene012612:intron
TATTTATAGAAACAAATACC+AGG 0.672534 8.1:-2151573 MS.gene012612:intron
GATGTCTTCACTCATAAACC+AGG 0.676578 8.1:-2152741 MS.gene012612:intron
TCTGCGTAGCAAAATCAACA+TGG 0.676856 8.1:+2150120 None:intergenic
GACAAAGCAAAACTGAATCG+AGG 0.686534 8.1:-2150890 MS.gene012612:CDS
GCAAGGAACCTCCACAACAG+AGG 0.691222 8.1:-2150792 MS.gene012612:CDS
TGGCAAAGGATTGAGTGACT+GGG 0.697528 8.1:-2152763 MS.gene012612:CDS
TGCTTACAAGCTCTCCAATG+GGG 0.708162 8.1:+2150735 None:intergenic
TATTATGGGCTGCTACAAAG+GGG 0.721105 8.1:+2151624 None:intergenic
GTATGATCCAAATAACACCA+AGG 0.728521 8.1:-2150409 MS.gene012612:CDS
TGGTCACTTAGATAATCTGG+GGG 0.736530 8.1:-2150346 MS.gene012612:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAATGTAACTAA+TGG + chr8.1:2152256-2152275 None:intergenic 10.0%
!!! ATTAAAATAATGAAGATTTT+AGG + chr8.1:2150106-2150125 None:intergenic 10.0%
!!! TAATAACATATATTTTTTTC+AGG - chr8.1:2150319-2150338 MS.gene012612:intron 10.0%
!!! TTCATTATTTTAATTAATCA+TGG - chr8.1:2150112-2150131 MS.gene012612:CDS 10.0%
!! AACTTAATATTATAGTATGA+AGG - chr8.1:2150145-2150164 MS.gene012612:CDS 15.0%
!!! ACATTTAGAACATATATAAT+GGG + chr8.1:2150574-2150593 None:intergenic 15.0%
!! ATGTGATAGGATAATATTAT+GGG + chr8.1:2151339-2151358 None:intergenic 20.0%
!! GTAATTAGTTAAAGTAGATA+AGG + chr8.1:2150550-2150569 None:intergenic 20.0%
!! TATTTATAGAAACAAATACC+AGG - chr8.1:2151373-2151392 MS.gene012612:CDS 20.0%
!! TGTCAATTTGTAATAAAAAC+AGG - chr8.1:2150591-2150610 MS.gene012612:CDS 20.0%
!!! AAAATCCAATTTAGTTTAAG+AGG - chr8.1:2150461-2150480 MS.gene012612:intron 20.0%
!!! CACATCATAATACTATTTTT+TGG - chr8.1:2150403-2150422 MS.gene012612:CDS 20.0%
!!! GACATTTAGAACATATATAA+TGG + chr8.1:2150575-2150594 None:intergenic 20.0%
!!! TAAATTGGATTTTGATTATG+AGG + chr8.1:2150454-2150473 None:intergenic 20.0%
! AAAAGAATAAACTACATGAC+TGG - chr8.1:2152580-2152599 MS.gene012612:CDS 25.0%
! AACAATACAACTTTCAAGAT+TGG + chr8.1:2152300-2152319 None:intergenic 25.0%
! AAGTGAAACAATGTAACAAA+CGG + chr8.1:2150975-2150994 None:intergenic 25.0%
! ACAATACAACTTTCAAGATT+GGG + chr8.1:2152299-2152318 None:intergenic 25.0%
! ACATCAAAGTTATCGATATA+TGG - chr8.1:2152658-2152677 MS.gene012612:intron 25.0%
! AGGTATTCAAGTATGAAAAA+TGG + chr8.1:2150265-2150284 None:intergenic 25.0%
! CAATTTGTAATAAAAACAGG+AGG - chr8.1:2150594-2150613 MS.gene012612:CDS 25.0%
! CATGTGATAGGATAATATTA+TGG + chr8.1:2151340-2151359 None:intergenic 25.0%
! CGATAACTTTGATGTTTATT+CGG + chr8.1:2152653-2152672 None:intergenic 25.0%
! GTCAAAATACATTATAATGC+TGG + chr8.1:2151114-2151133 None:intergenic 25.0%
! TAACTAATGGAATCATCAAA+AGG + chr8.1:2152243-2152262 None:intergenic 25.0%
! TGGTTGAAATTCAATGAAAA+TGG + chr8.1:2152462-2152481 None:intergenic 25.0%
! TGTAACCTCTTAAACTAAAT+TGG + chr8.1:2150469-2150488 None:intergenic 25.0%
! TTACTGTTGATCAATATCAT+CGG - chr8.1:2150371-2150390 MS.gene012612:CDS 25.0%
!!! AATGTATTTTGACATGTACA+GGG - chr8.1:2151121-2151140 MS.gene012612:intron 25.0%
!!! GACATATGTTTTAAATCCTT+TGG - chr8.1:2151164-2151183 MS.gene012612:intron 25.0%
!!! TAATGTATTTTGACATGTAC+AGG - chr8.1:2151120-2151139 MS.gene012612:intron 25.0%
!!! TCACTTTTGACTTCATATTT+TGG - chr8.1:2151813-2151832 MS.gene012612:intron 25.0%
!!! TTTGGTTTTACAGTGAAATT+TGG - chr8.1:2152797-2152816 MS.gene012612:intron 25.0%
AAACTGGAACAAACAATTCA+AGG - chr8.1:2152943-2152962 MS.gene012612:CDS 30.0%
AAATAGCTGAGTATTTGTGT+TGG - chr8.1:2152699-2152718 MS.gene012612:intron 30.0%
AAATTTGGAAATTGTAGCGA+GGG - chr8.1:2151284-2151303 MS.gene012612:CDS 30.0%
AATGGTTCAAATCATGTGAT+TGG - chr8.1:2151879-2151898 MS.gene012612:intron 30.0%
AGACTGAAATCTTGATCAAA+TGG - chr8.1:2151861-2151880 MS.gene012612:intron 30.0%
ATCATTAAGACATTCTTCCT+TGG + chr8.1:2152557-2152576 None:intergenic 30.0%
ATGAAGAAGGTAAATAAACC+TGG + chr8.1:2150075-2150094 None:intergenic 30.0%
ATTATGTAATTACGCAACTC+AGG + chr8.1:2150303-2150322 None:intergenic 30.0%
GGGTAGTAGAATAAAAAACT+TGG - chr8.1:2152994-2153013 MS.gene012612:CDS 30.0%
GTTTGACTCTATAATAATGC+AGG - chr8.1:2151949-2151968 MS.gene012612:CDS 30.0%
TAAACATTGAGCCAATCAAA+TGG + chr8.1:2152334-2152353 None:intergenic 30.0%
TACCATGCAAAAGTTTGATT+TGG - chr8.1:2151736-2151755 MS.gene012612:CDS 30.0%
TACTCTGACTTTAGTAAATC+AGG + chr8.1:2151839-2151858 None:intergenic 30.0%
TCTATAATAATGCAGGATCT+TGG - chr8.1:2151956-2151975 MS.gene012612:CDS 30.0%
TCTGTGTAAGAGACTAATAA+TGG + chr8.1:2152482-2152501 None:intergenic 30.0%
TTAGGAGATAAACATGAAGA+AGG + chr8.1:2150088-2150107 None:intergenic 30.0%
TTATCGATATATGGTTTACC+TGG - chr8.1:2152667-2152686 MS.gene012612:intron 30.0%
TTGTCGTTACTGGAAAATTT+GGG + chr8.1:2152041-2152060 None:intergenic 30.0%
TTTGTCGTTACTGGAAAATT+TGG + chr8.1:2152042-2152061 None:intergenic 30.0%
! ATCCAAATCAAACTTTTGCA+TGG + chr8.1:2151741-2151760 None:intergenic 30.0%
! GGTCTTTTTACTATATTACC+TGG + chr8.1:2151394-2151413 None:intergenic 30.0%
! TATTGACACAACACTTGTTA+AGG + chr8.1:2150493-2150512 None:intergenic 30.0%
! TGATGTTTATTCGGTTTTTG+TGG + chr8.1:2152644-2152663 None:intergenic 30.0%
!! CTGGTATTGACTACTATAAT+AGG - chr8.1:2150826-2150845 MS.gene012612:CDS 30.0%
!! TCTATCCGAATGTTTTTGTA+GGG - chr8.1:2152503-2152522 MS.gene012612:intron 30.0%
AAGAGAAAGTTGGATGGAAA+AGG + chr8.1:2150031-2150050 None:intergenic 35.0%
ACAGGAGGATGTAGATTTAA+TGG - chr8.1:2150609-2150628 MS.gene012612:CDS 35.0%
ACTGGTCACTTAGATAATCT+GGG - chr8.1:2152598-2152617 MS.gene012612:CDS 35.0%
AGAAGGTAAATAAACCTGGT+AGG + chr8.1:2150071-2150090 None:intergenic 35.0%
ATATCATCAATGTGTGAGTC+TGG - chr8.1:2152131-2152150 MS.gene012612:CDS 35.0%
ATCTTGGATCCAATCTTCTT+CGG - chr8.1:2151972-2151991 MS.gene012612:CDS 35.0%
ATGCTGGTAAAGTATGACAA+AGG + chr8.1:2151098-2151117 None:intergenic 35.0%
ATGTGTAGACTCCATTTGAT+TGG - chr8.1:2152320-2152339 MS.gene012612:CDS 35.0%
ATTGGCATCAATCATTATGC+AGG - chr8.1:2152089-2152108 MS.gene012612:intron 35.0%
CAAATTTGGAAATTGTAGCG+AGG - chr8.1:2151283-2151302 MS.gene012612:CDS 35.0%
CAACAAACTGCACAAAAAGA+TGG - chr8.1:2152185-2152204 MS.gene012612:intron 35.0%
CCAATGTTCATTACTGAGAA+TGG - chr8.1:2152409-2152428 MS.gene012612:intron 35.0%
CCATACCCTACAAAAACATT+CGG + chr8.1:2152511-2152530 None:intergenic 35.0%
CCATTCTCAGTAATGAACAT+TGG + chr8.1:2152412-2152431 None:intergenic 35.0%
CGCTACAATTTCCAAATTTG+CGG + chr8.1:2151283-2151302 None:intergenic 35.0%
GAAAACTGTTACCTATGTGA+AGG - chr8.1:2152369-2152388 MS.gene012612:intron 35.0%
GAAACAATGTAACAAACGGT+TGG + chr8.1:2150971-2150990 None:intergenic 35.0%
GAAATGTTGTTATCATGACC+TGG + chr8.1:2150226-2150245 None:intergenic 35.0%
GCTACAATTTCCAAATTTGC+GGG + chr8.1:2151282-2151301 None:intergenic 35.0%
GTATGATCCAAATAACACCA+AGG - chr8.1:2152537-2152556 MS.gene012612:intron 35.0%
GTTAAATCAAGATGCGTACT+TGG + chr8.1:2150688-2150707 None:intergenic 35.0%
GTTTGAACCGTTTAGCAATT+CGG - chr8.1:2151620-2151639 MS.gene012612:CDS 35.0%
TACAACTTTCAAGATTGGGT+TGG + chr8.1:2152295-2152314 None:intergenic 35.0%
TAGAGTCAAACTTCATGATC+AGG + chr8.1:2151940-2151959 None:intergenic 35.0%
TAGATTTGGAGAAGTCAACT+TGG - chr8.1:2150803-2150822 MS.gene012612:CDS 35.0%
TATCATCAATGTGTGAGTCT+GGG - chr8.1:2152132-2152151 MS.gene012612:CDS 35.0%
TCAGGTGATTGAATGAATGA+AGG + chr8.1:2150285-2150304 None:intergenic 35.0%
TGATCAATATCATCGGTATC+TGG - chr8.1:2150378-2150397 MS.gene012612:CDS 35.0%
TTATTCACTACCTATGCTCT+TGG - chr8.1:2149971-2149990 MS.gene012612:CDS 35.0%
TTTCCATCCAACTTTCTCTT+TGG - chr8.1:2150031-2150050 MS.gene012612:CDS 35.0%
! AAAATCACCTCCATCTCTTT+TGG + chr8.1:2152005-2152024 None:intergenic 35.0%
! AAAGAGATGGAGGTGATTTT+AGG - chr8.1:2152005-2152024 MS.gene012612:intron 35.0%
! AAATCACCTCCATCTCTTTT+GGG + chr8.1:2152004-2152023 None:intergenic 35.0%
! AATATTATGGGCTGCTACAA+AGG + chr8.1:2151327-2151346 None:intergenic 35.0%
! ATATTATGGGCTGCTACAAA+GGG + chr8.1:2151326-2151345 None:intergenic 35.0%
! ATGTTCTGGATTACTGCTTT+CGG + chr8.1:2152909-2152928 None:intergenic 35.0%
! CATCTTTTTGTGCAGTTTGT+TGG + chr8.1:2152187-2152206 None:intergenic 35.0%
! GAGATTTGGTTCATTGAATG+TGG + chr8.1:2151210-2151229 None:intergenic 35.0%
! TACCAACTAGCTGACAATTT+TGG + chr8.1:2152860-2152879 None:intergenic 35.0%
!! AGTACTGATGATGGAAGTAA+CGG - chr8.1:2150343-2150362 MS.gene012612:CDS 35.0%
!! CATTCTTCCTTGGTGTTATT+TGG + chr8.1:2152547-2152566 None:intergenic 35.0%
!! CTCTATCCGAATGTTTTTGT+AGG - chr8.1:2152502-2152521 MS.gene012612:intron 35.0%
!! GAGTATTTGTGTTGGTTATG+TGG - chr8.1:2152707-2152726 MS.gene012612:intron 35.0%
!!! TTTTCAGGTAGTACTGATGA+TGG - chr8.1:2150334-2150353 MS.gene012612:intron 35.0%
AACTTTGTAGCAGCATGCTA+AGG - chr8.1:2151418-2151437 MS.gene012612:intron 40.0%
AATCGAGGACTCGATTTCAT+TGG - chr8.1:2152071-2152090 MS.gene012612:intron 40.0%
AGTCAAACTTCATGATCAGG+TGG + chr8.1:2151937-2151956 None:intergenic 40.0%
ATCATTCAGCATGAACTGGT+AGG - chr8.1:2151674-2151693 MS.gene012612:CDS 40.0%
ATCTGTCGTCAAGTTCTTGA+GGG + chr8.1:2151004-2151023 None:intergenic 40.0%
ATTGTACCTGTCCTTCACAT+AGG + chr8.1:2152383-2152402 None:intergenic 40.0%
CAAGAACTTGACGACAGATA+TGG - chr8.1:2151005-2151024 MS.gene012612:intron 40.0%
CAGTAATCCAGAACATGACA+CGG - chr8.1:2152913-2152932 MS.gene012612:CDS 40.0%
CCAAATCTCCAAGTTTCACT+TGG - chr8.1:2151221-2151240 MS.gene012612:intron 40.0%
CCAAGTGAAACTTGGAGATT+TGG + chr8.1:2151224-2151243 None:intergenic 40.0%
CTATCAAAGTCAACAGCTAC+CGG - chr8.1:2150635-2150654 MS.gene012612:intron 40.0%
CTCAATCATTCAGCATGAAC+TGG - chr8.1:2151670-2151689 MS.gene012612:CDS 40.0%
CTCCAAAATTGTCAGCTAGT+TGG - chr8.1:2152855-2152874 MS.gene012612:intron 40.0%
CTGCAAGTATACAATTCGCA+GGG - chr8.1:2150943-2150962 MS.gene012612:CDS 40.0%
CTGGTCACTTAGATAATCTG+GGG - chr8.1:2152599-2152618 MS.gene012612:CDS 40.0%
GACAAAGCAAAACTGAATCG+AGG - chr8.1:2152056-2152075 MS.gene012612:intron 40.0%
GACAACTTTGAGTGGCTATT+TGG - chr8.1:2152779-2152798 MS.gene012612:CDS 40.0%
GATGTCTTCACTCATAAACC+AGG - chr8.1:2150205-2150224 MS.gene012612:CDS 40.0%
GCAAATATGCTTAGAACCGT+AGG - chr8.1:2152965-2152984 MS.gene012612:CDS 40.0%
GTACTTAACTCTGTCACCAA+AGG + chr8.1:2151183-2151202 None:intergenic 40.0%
GTGAATTGACTAGAACACAC+AGG + chr8.1:2150751-2150770 None:intergenic 40.0%
GTTTCACTTGGTTACCGAAA+TGG - chr8.1:2151233-2151252 MS.gene012612:intron 40.0%
TATCTGTCGTCAAGTTCTTG+AGG + chr8.1:2151005-2151024 None:intergenic 40.0%
TCAGCTACCGAATTGCTAAA+CGG + chr8.1:2151630-2151649 None:intergenic 40.0%
TCTGCGTAGCAAAATCAACA+TGG + chr8.1:2152829-2152848 None:intergenic 40.0%
TGAGCTGTTCAATCTTGATC+TGG + chr8.1:2151796-2151815 None:intergenic 40.0%
TGGTCACTTAGATAATCTGG+GGG - chr8.1:2152600-2152619 MS.gene012612:CDS 40.0%
TTCGGTAACCAAGTGAAACT+TGG + chr8.1:2151232-2151251 None:intergenic 40.0%
TTGCCCACGAAATTGAAAAC+CGG + chr8.1:2150657-2150676 None:intergenic 40.0%
TTGGTATAAACCCTCTGTTG+TGG + chr8.1:2152168-2152187 None:intergenic 40.0%
! ACAGTTTTCTTCATGCCTTG+TGG + chr8.1:2152358-2152377 None:intergenic 40.0%
! CAGTTTTCTTCATGCCTTGT+GGG + chr8.1:2152357-2152376 None:intergenic 40.0%
! CAGTTTTGCTTTGTCGTTAC+TGG + chr8.1:2152051-2152070 None:intergenic 40.0%
! GACTGGTCACTTAGATAATC+TGG - chr8.1:2152597-2152616 MS.gene012612:CDS 40.0%
! TATTATGGGCTGCTACAAAG+GGG + chr8.1:2151325-2151344 None:intergenic 40.0%
! TTGGTGACAGAGTTAAGTAC+TGG - chr8.1:2151183-2151202 MS.gene012612:intron 40.0%
!! ATGATCAGGTGGATTGTCTA+CGG + chr8.1:2151926-2151945 None:intergenic 40.0%
!! ATGGTGGGTGTTTACCATTT+CGG + chr8.1:2151250-2151269 None:intergenic 40.0%
!! CCGAATGTTTTTGTAGGGTA+TGG - chr8.1:2152508-2152527 MS.gene012612:intron 40.0%
!! GTGTTGGTTATGTGGCTATA+GGG - chr8.1:2152715-2152734 MS.gene012612:intron 40.0%
!! TGTGTTGGTTATGTGGCTAT+AGG - chr8.1:2152714-2152733 MS.gene012612:intron 40.0%
!! TTACTTTTAACGCTGCATCC+AGG - chr8.1:2151554-2151573 MS.gene012612:intron 40.0%
!!! CTACCGGTTTTCAATTTCGT+GGG - chr8.1:2150651-2150670 MS.gene012612:intron 40.0%
AAAGTTGTCAAGCAAGGACC+AGG + chr8.1:2152768-2152787 None:intergenic 45.0%
AACCAGTTGCTCACTGTGAT+TGG + chr8.1:2151046-2151065 None:intergenic 45.0%
ACCAGTTGCTCACTGTGATT+GGG + chr8.1:2151045-2151064 None:intergenic 45.0%
AGCAGTGCCAAAGAGAAAGT+TGG + chr8.1:2150041-2150060 None:intergenic 45.0%
AGTGCTTACAAGCTCTCCAA+TGG + chr8.1:2152216-2152235 None:intergenic 45.0%
ATCGACGCTTTGCTACTCAA+AGG - chr8.1:2150852-2150871 MS.gene012612:CDS 45.0%
ATGACACGGATACGAGAAAC+TGG - chr8.1:2152927-2152946 MS.gene012612:CDS 45.0%
ATGGCAAAGGATTGAGTGAC+TGG - chr8.1:2150182-2150201 MS.gene012612:CDS 45.0%
ATGTGAGAGGATACTTTGCC+TGG - chr8.1:2152747-2152766 MS.gene012612:CDS 45.0%
CAAAAAGATGGTGTCCCCAT+TGG - chr8.1:2152197-2152216 MS.gene012612:intron 45.0%
CAAGTACCCAAAAGAGATGG+AGG - chr8.1:2151995-2152014 MS.gene012612:intron 45.0%
CATGCTGCTACAAAGTTGTG+AGG + chr8.1:2151415-2151434 None:intergenic 45.0%
CCACTCAAAGTTGTCAAGCA+AGG + chr8.1:2152774-2152793 None:intergenic 45.0%
CCTGCAAGTATACAATTCGC+AGG - chr8.1:2150942-2150961 MS.gene012612:CDS 45.0%
CCTGCGAATTGTATACTTGC+AGG + chr8.1:2150945-2150964 None:intergenic 45.0%
CCTTGCTTGACAACTTTGAG+TGG - chr8.1:2152771-2152790 MS.gene012612:CDS 45.0%
CGCTTTGCTACTCAAAGGTT+TGG - chr8.1:2150857-2150876 MS.gene012612:CDS 45.0%
CTGTGAGCAGAAGGTAGATT+TGG - chr8.1:2150789-2150808 MS.gene012612:CDS 45.0%
CTGTTACCTATGTGAAGGAC+AGG - chr8.1:2152374-2152393 MS.gene012612:intron 45.0%
GAACTTGACGACAGATATGG+AGG - chr8.1:2151008-2151027 MS.gene012612:intron 45.0%
GCTTACTTGAGTGATGGCAA+AGG - chr8.1:2150169-2150188 MS.gene012612:CDS 45.0%
GTATAAACCCTCTGTTGTGG+AGG + chr8.1:2152165-2152184 None:intergenic 45.0%
GTGCCAAAGAGAAAGTTGGA+TGG + chr8.1:2150037-2150056 None:intergenic 45.0%
GTGCTTACAAGCTCTCCAAT+GGG + chr8.1:2152215-2152234 None:intergenic 45.0%
TCCTCATTGCTCAATGTCCA+TGG - chr8.1:2151700-2151719 MS.gene012612:CDS 45.0%
TGCTTACAAGCTCTCCAATG+GGG + chr8.1:2152214-2152233 None:intergenic 45.0%
TGGCAAAGGATTGAGTGACT+GGG - chr8.1:2150183-2150202 MS.gene012612:CDS 45.0%
TGGCTCAATGTTTACCCACA+AGG - chr8.1:2152340-2152359 MS.gene012612:intron 45.0%
TGGTTATGTGGCTATAGGGA+AGG - chr8.1:2152719-2152738 MS.gene012612:intron 45.0%
TTGACGACAGATATGGAGGT+TGG - chr8.1:2151012-2151031 MS.gene012612:intron 45.0%
TTGCAATGACTGTGAGCAGA+AGG - chr8.1:2150780-2150799 MS.gene012612:CDS 45.0%
TTTGGAGAAGTCAACTTGGC+TGG - chr8.1:2150807-2150826 MS.gene012612:CDS 45.0%
! TGAGAATGCTCCAAGAGCAT+AGG + chr8.1:2149984-2150003 None:intergenic 45.0%
! TGGAGCATTCTCATTCTCAG+AGG - chr8.1:2149991-2150010 MS.gene012612:CDS 45.0%
!! ATAATCTGGGGGCGTCAATA+AGG - chr8.1:2152611-2152630 MS.gene012612:intron 45.0%
!! CAGCTATTTTACGTGTGACC+AGG + chr8.1:2152688-2152707 None:intergenic 45.0%
!! GAAGGTGCTTACTTGAGTGA+TGG - chr8.1:2150163-2150182 MS.gene012612:CDS 45.0%
!!! GCTACCGGTTTTCAATTTCG+TGG - chr8.1:2150650-2150669 MS.gene012612:intron 45.0%
ACACCTCTTGTTCGTCTCAC+AGG + chr8.1:2150903-2150922 None:intergenic 50.0%
CAACTGCAGCTGCATGTGAT+AGG + chr8.1:2151352-2151371 None:intergenic 50.0%
CAAGGAACCTCCACAACAGA+GGG - chr8.1:2152155-2152174 MS.gene012612:intron 50.0%
CCAGTTGCTCACTGTGATTG+GGG + chr8.1:2151044-2151063 None:intergenic 50.0%
CGGCAAGTACCCAAAAGAGA+TGG - chr8.1:2151992-2152011 MS.gene012612:intron 50.0%
CTCGTATCCGTGTCATGTTC+TGG + chr8.1:2152923-2152942 None:intergenic 50.0%
CTTAGAACCGTAGGCTCAGA+GGG - chr8.1:2152974-2152993 MS.gene012612:CDS 50.0%
GCATTGTCGTACACGTTGAC+TGG - chr8.1:2151598-2151617 MS.gene012612:CDS 50.0%
GCCATGGACATTGAGCAATG+AGG + chr8.1:2151704-2151723 None:intergenic 50.0%
GGGTACTTGCCGAAGAAGAT+TGG + chr8.1:2151984-2152003 None:intergenic 50.0%
TAGCGAGGGAGATTCAGAGA+AGG - chr8.1:2151298-2151317 MS.gene012612:CDS 50.0%
TCAATGTGTGAGTCTGGGCA+AGG - chr8.1:2152137-2152156 MS.gene012612:CDS 50.0%
TCTACTACCCTCTGAGCCTA+CGG + chr8.1:2152984-2153003 None:intergenic 50.0%
TTCGTCTCACAGGCAGTAGA+TGG + chr8.1:2150893-2150912 None:intergenic 50.0%
!! AAGATTGGGTTGGACGTGCA+AGG + chr8.1:2152285-2152304 None:intergenic 50.0%
AATTTGCGGGAGCAGCGACA+TGG + chr8.1:2151269-2151288 None:intergenic 55.0%
AGGGAAGGAGCAGATGTGAG+AGG - chr8.1:2152734-2152753 MS.gene012612:intron 55.0%
CACTGCTTCTTCTGCCTACC+AGG - chr8.1:2150054-2150073 MS.gene012612:CDS 55.0%
CCCCAATCACAGTGAGCAAC+TGG - chr8.1:2151041-2151060 MS.gene012612:intron 55.0%
CTGCCTGTGAGACGAACAAG+AGG - chr8.1:2150897-2150916 MS.gene012612:CDS 55.0%
GCAAGGAACCTCCACAACAG+AGG - chr8.1:2152154-2152173 MS.gene012612:intron 55.0%
GCTGAGCAGGGAGGACAAAT+TGG - chr8.1:2151576-2151595 MS.gene012612:CDS 55.0%
GCTTAGAACCGTAGGCTCAG+AGG - chr8.1:2152973-2152992 MS.gene012612:CDS 55.0%
GGTAGAAGTCGAACGAGCCA+TGG + chr8.1:2151720-2151739 None:intergenic 55.0%
TGTCGCTGCTCCCGCAAATT+TGG - chr8.1:2151269-2151288 MS.gene012612:intron 55.0%
TTTGTCCTCCCTGCTCAGCC+TGG + chr8.1:2151575-2151594 None:intergenic 60.0%
ACGCTGCATCCAGGCTGAGC+AGG - chr8.1:2151563-2151582 MS.gene012612:intron 65.0%
CGCTGCATCCAGGCTGAGCA+GGG - chr8.1:2151564-2151583 MS.gene012612:intron 65.0%
TGCATCCAGGCTGAGCAGGG+AGG - chr8.1:2151567-2151586 MS.gene012612:intron 65.0%
TGCGGGAGCAGCGACATGGT+GGG + chr8.1:2151265-2151284 None:intergenic 65.0%
TTGCGGGAGCAGCGACATGG+TGG + chr8.1:2151266-2151285 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 2149947 2153021 2149947 ID=MS.gene012612
chr8.1 mRNA 2149947 2153021 2149947 ID=MS.gene012612.t1;Parent=MS.gene012612
chr8.1 exon 2152893 2153021 2152893 ID=MS.gene012612.t1.exon1;Parent=MS.gene012612.t1
chr8.1 CDS 2152893 2153021 2152893 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2152742 2152808 2152742 ID=MS.gene012612.t1.exon2;Parent=MS.gene012612.t1
chr8.1 CDS 2152742 2152808 2152742 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2152569 2152627 2152569 ID=MS.gene012612.t1.exon3;Parent=MS.gene012612.t1
chr8.1 CDS 2152569 2152627 2152569 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2152280 2152355 2152280 ID=MS.gene012612.t1.exon4;Parent=MS.gene012612.t1
chr8.1 CDS 2152280 2152355 2152280 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2152095 2152169 2152095 ID=MS.gene012612.t1.exon5;Parent=MS.gene012612.t1
chr8.1 CDS 2152095 2152169 2152095 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2151917 2152004 2151917 ID=MS.gene012612.t1.exon6;Parent=MS.gene012612.t1
chr8.1 CDS 2151917 2152004 2151917 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2151574 2151826 2151574 ID=MS.gene012612.t1.exon7;Parent=MS.gene012612.t1
chr8.1 CDS 2151574 2151826 2151574 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2151277 2151392 2151277 ID=MS.gene012612.t1.exon8;Parent=MS.gene012612.t1
chr8.1 CDS 2151277 2151392 2151277 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2150742 2150997 2150742 ID=MS.gene012612.t1.exon9;Parent=MS.gene012612.t1
chr8.1 CDS 2150742 2150997 2150742 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2150538 2150640 2150538 ID=MS.gene012612.t1.exon10;Parent=MS.gene012612.t1
chr8.1 CDS 2150538 2150640 2150538 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2150336 2150444 2150336 ID=MS.gene012612.t1.exon11;Parent=MS.gene012612.t1
chr8.1 CDS 2150336 2150444 2150336 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
chr8.1 exon 2149947 2150232 2149947 ID=MS.gene012612.t1.exon12;Parent=MS.gene012612.t1
chr8.1 CDS 2149947 2150232 2149947 ID=cds.MS.gene012612.t1;Parent=MS.gene012612.t1
Gene Sequence

>MS.gene012612

ATGGAGATACAACTACTCTTTTTCTTATTCACTACCTATGCTCTTGGAGCATTCTCATTCTCAGAGGAGTTTGATCATTATCCTTTTCCATCCAACTTTCTCTTTGGCACTGCTTCTTCTGCCTACCAGGTTTATTTACCTTCTTCATGTTTATCTCCTAAAATCTTCATTATTTTAATTAATCATGGCTGATTATTAAACTTAATATTATAGTATGAAGGTGCTTACTTGAGTGATGGCAAAGGATTGAGTGACTGGGATGTCTTCACTCATAAACCAGGTCATGATAACAACATTTCTATGTCATCTAGACATCCATTTTTCATACTTGAATACCTTCATTCATTCAATCACCTGAGTTGCGTAATTACATAATAACATATATTTTTTTCAGGTAGTACTGATGATGGAAGTAACGGTGATGTTACTGTTGATCAATATCATCGGTATCTGGTACACATCATAATACTATTTTTTGGTGAATCATCACAATACTTTTAAGTTCCTCATAATCAAAATCCAATTTAGTTTAAGAGGTTACAACCTTAACAAGTGTTGTGTCAATACTAGAATTTTAGACTTGTCGAGAAAGTATGTGTACCTTATCTACTTTAACTAATTACACCCATTATATATGTTCTAAATGTCAATTTGTAATAAAAACAGGAGGATGTAGATTTAATGGAAGCTATCAAAGTCAACAGCTACCGGTTTTCAATTTCGTGGGCAAGAATTCTACCAAGTACGCATCTTGATTTAACATAATCTCAGTGATTTCAACTAATTAGCAAATATTAAGTACCTGTGTGTTCTAGTCAATTCACAAGCAGAATTTGCAATGACTGTGAGCAGAAGGTAGATTTGGAGAAGTCAACTTGGCTGGTATTGACTACTATAATAGGCTTATCGACGCTTTGCTACTCAAAGGTTTGGTTTCAATCTTCCATCTACTGCCTGTGAGACGAACAAGAGGTGTCACTGTTCGATTAGCTTAACCTGCAAGTATACAATTCGCAGGGATCCAACCGTTTGTTACATTGTTTCACTTTGATTTCCCTCAAGAACTTGACGACAGATATGGAGGTTGGCTAAGTCCCCAATCACAGTGAGCAACTGGTTCTACAATTCAATTTGCTCATACTTCACTTCCTTTGTCATACTTTACCAGCATTATAATGTATTTTGACATGTACAGGGAAGATTTTGTATTATTCGCAGACATATGTTTTAAATCCTTTGGTGACAGAGTTAAGTACTGGACCACATTCAATGAACCAAATCTCCAAGTTTCACTTGGTTACCGAAATGGTAAACACCCACCATGTCGCTGCTCCCGCAAATTTGGAAATTGTAGCGAGGGAGATTCAGAGAAGGACCCCTTTGTAGCAGCCCATAATATTATCCTATCACATGCAGCTGCAGTTGATATTTATAGAAACAAATACCAGGTAATATAGTAAAAAGACCTCACAACTTTGTAGCAGCATGCTAAGGACTCAAATTATTTCTATTTAAGCTAATAAAAAAATAATTATGATGCTAGTTTTACAAATCAAAGTGAAAAGTAAGTATGATTGAACTCTCATTCGAAACATTGTAAACTTGATTTACTTTTAACGCTGCATCCAGGCTGAGCAGGGAGGACAAATTGGCATTGTCGTACACGTTGACTGGTTTGAACCGTTTAGCAATTCGGTAGCTGATAAATTAGCTGCTGAAAGAGCTCAATCATTCAGCATGAACTGGTAGGATTTCCTCATTGCTCAATGTCCATGGCTCGTTCGACTTCTACCATGCAAAAGTTTGATTTGGATTTGTTCTACTCACATAGTCACATTTGCAACTGCCAGATCAAGATTGAACAGCTCACTTTTGACTTCATATTTTGGCCTGATTTACTAAAGTCAGAGTATGAGACTGAAATCTTGATCAAATGGTTCAAATCATGTGATTGGACTCAATGCATGATTCTCTAACCGTAGACAATCCACCTGATCATGAAGTTTGACTCTATAATAATGCAGGATCTTGGATCCAATCTTCTTCGGCAAGTACCCAAAAGAGATGGAGGTGATTTTAGGAAGTACATTACCCAAATTTTCCAGTAACGACAAAGCAAAACTGAATCGAGGACTCGATTTCATTGGCATCAATCATTATGCAGGTTACTATGCTAGAGACTGCATATCATCAATGTGTGAGTCTGGGCAAGGAACCTCCACAACAGAGGGTTTATACCAACAAACTGCACAAAAAGATGGTGTCCCCATTGGAGAGCTTGTAAGCACTTCATCCTTTTGATGATTCCATTAGTTACATTTTTATTTATCGTTAACCTTGCACGTCCAACCCAATCTTGAAAGTTGTATTGTTATGTGTAGACTCCATTTGATTGGCTCAATGTTTACCCACAAGGCATGAAGAAAACTGTTACCTATGTGAAGGACAGGTACAATAACACTCCAATGTTCATTACTGAGAATGGTAAGTAAAGAAACACATTGAAGTTGAACCATTTTCATTGAATTTCAACCATTATTAGTCTCTTACACAGACTCTATCCGAATGTTTTTGTAGGGTATGGCAATTTGTATGATCCAAATAACACCAAGGAAGAATGTCTTAATGATATTAAAAGAATAAACTACATGACTGGTCACTTAGATAATCTGGGGGCGTCAATAAGGTAAGAGTCCACAAAAACCGAATAAACATCAAAGTTATCGATATATGGTTTACCTGGTCACACGTAAAATAGCTGAGTATTTGTGTTGGTTATGTGGCTATAGGGAAGGAGCAGATGTGAGAGGATACTTTGCCTGGTCCTTGCTTGACAACTTTGAGTGGCTATTTGGTTTTACAGTGAAATTTGGACTTTACCATGTTGATTTTGCTACGCAGAAGAGAACTCCAAAATTGTCAGCTAGTTGGTACAAACATTTCATTGCAAAACATAAAACCGAAAGCAGTAATCCAGAACATGACACGGATACGAGAAACTGGAACAAACAATTCAAGGCAAATATGCTTAGAACCGTAGGCTCAGAGGGTAGTAGAATAAAAAACTTGGATTAA
Protein sequence

>MS.gene012612.t1

MEIQLLFFLFTTYALGAFSFSEEFDHYPFPSNFLFGTASSAYQYEGAYLSDGKGLSDWDVFTHKPGSTDDGSNGDVTVDQYHRYLEDVDLMEAIKVNSYRFSISWARILPKGRFGEVNLAGIDYYNRLIDALLLKGIQPFVTLFHFDFPQELDDRYGGWLSPQSQEDFVLFADICFKSFGDRVKYWTTFNEPNLQVSLGYRNGKHPPCRCSRKFGNCSEGDSEKDPFVAAHNIILSHAAAVDIYRNKYQAEQGGQIGIVVHVDWFEPFSNSVADKLAAERAQSFSMNWILDPIFFGKYPKEMEVILGSTLPKFSSNDKAKLNRGLDFIGINHYAGYYARDCISSMCESGQGTSTTEGLYQQTAQKDGVPIGELTPFDWLNVYPQGMKKTVTYVKDRYNNTPMFITENGYGNLYDPNNTKEECLNDIKRINYMTGHLDNLGASIREGADVRGYFAWSLLDNFEWLFGFTVKFGLYHVDFATQKRTPKLSASWYKHFIAKHKTESSNPEHDTDTRNWNKQFKANMLRTVGSEGSRIKNLD