Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033864.t1 | XP_024633164.1 | 96.4 | 1176 | 40 | 1 | 1 | 1174 | 1 | 1176 | 0.00E+00 | 2021.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033864.t1 | F4IUX6 | 73.0 | 1171 | 302 | 8 | 6 | 1173 | 1 | 1160 | 0.0e+00 | 1436.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033864.t1 | A0A396JA39 | 96.4 | 1176 | 40 | 1 | 1 | 1174 | 1 | 1176 | 0.0e+00 | 2021.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene46845 | MS.gene033864 | PPI |
MS.gene033864 | MS.gene058768 | PPI |
MS.gene53233 | MS.gene033864 | PPI |
MS.gene64202 | MS.gene033864 | PPI |
MS.gene39725 | MS.gene033864 | PPI |
MS.gene019784 | MS.gene033864 | PPI |
MS.gene033864 | MS.gene03315 | PPI |
MS.gene021158 | MS.gene033864 | PPI |
MS.gene64000 | MS.gene033864 | PPI |
MS.gene24174 | MS.gene033864 | PPI |
MS.gene033864 | MS.gene41129 | PPI |
MS.gene003999 | MS.gene033864 | PPI |
MS.gene03346 | MS.gene033864 | PPI |
MS.gene85722 | MS.gene033864 | PPI |
MS.gene57277 | MS.gene033864 | PPI |
MS.gene48145 | MS.gene033864 | PPI |
MS.gene009274 | MS.gene033864 | PPI |
MS.gene80364 | MS.gene033864 | PPI |
MS.gene27050 | MS.gene033864 | PPI |
MS.gene30557 | MS.gene033864 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033864.t1 | MTR_2g048630 | 98.910 | 1193 | 11 | 1 | 6 | 1196 | 1 | 1193 | 0.0 | 2420 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033864.t1 | AT2G39260 | 70.151 | 1196 | 338 | 11 | 6 | 1197 | 1 | 1181 | 0.0 | 1629 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTACCTCTTCGTGAATTTC+TGG | 0.113527 | 2.2:+38372912 | None:intergenic |
TTGACAGTCACTTCGATTAA+TGG | 0.177885 | 2.2:-38372431 | MS.gene033864:intron |
CAACTTCTTAATAAATAAAA+AGG | 0.191434 | 2.2:-38369975 | MS.gene033864:intron |
GCTACTCGTGCAGATCTTTC+AGG | 0.217647 | 2.2:+38368864 | None:intergenic |
ATGAATGTTTACCTGATCTT+AGG | 0.225256 | 2.2:-38371536 | MS.gene033864:intron |
TGCTCTATTGCAGAGGCTTC+CGG | 0.232577 | 2.2:-38370312 | MS.gene033864:CDS |
ATCAGGAATATCAGGTTTAT+TGG | 0.234730 | 2.2:-38369827 | MS.gene033864:CDS |
CCCATACGTATACTAGTTTC+TGG | 0.234909 | 2.2:+38368984 | None:intergenic |
AAGTCTTGAAGGAACAAATT+TGG | 0.263316 | 2.2:-38370336 | MS.gene033864:CDS |
ATAATTTATGCAGGAAAGTA+TGG | 0.266508 | 2.2:-38364860 | MS.gene033864:intron |
GGATGTTGAATTTGACTTGC+AGG | 0.274457 | 2.2:-38366411 | MS.gene033864:intron |
TTGTATCTCATTATTGTCTT+TGG | 0.275629 | 2.2:-38367690 | MS.gene033864:CDS |
GGTTGACTCTTGTCTGATTC+AGG | 0.285362 | 2.2:+38370533 | None:intergenic |
TGCCCATCCTCTGGCATTAC+AGG | 0.286707 | 2.2:+38371663 | None:intergenic |
GAAAGAAGCGGCTGAGCTTC+AGG | 0.290560 | 2.2:-38364587 | MS.gene033864:CDS |
ACAGATTGCTCATTAACTTT+TGG | 0.290659 | 2.2:+38371321 | None:intergenic |
AAAACGAATAACATGCTTTC+CGG | 0.293616 | 2.2:+38372640 | None:intergenic |
CTGGTTGCATCTCTTGCTGC+TGG | 0.295039 | 2.2:-38368272 | MS.gene033864:CDS |
TCAAAATCAGCTTCTTCTAA+TGG | 0.306465 | 2.2:+38365204 | None:intergenic |
GATCCTTCAAATACATTCAT+TGG | 0.308350 | 2.2:+38364787 | None:intergenic |
GATAACAGCATTGAGGAAAA+TGG | 0.332449 | 2.2:-38365426 | MS.gene033864:CDS |
AGACAAAGATCAGGAATATC+AGG | 0.337105 | 2.2:-38369835 | MS.gene033864:CDS |
CTTCTGTTGTTGAACCCATA+TGG | 0.337453 | 2.2:-38371584 | MS.gene033864:CDS |
CCTGGTCTTCAGTTGTTTGA+AGG | 0.339897 | 2.2:-38369771 | MS.gene033864:intron |
CCTCCAACATCTGCAATAGA+AGG | 0.343592 | 2.2:+38370005 | None:intergenic |
GGTGGAAGTGCTCCTACTTA+AGG | 0.348750 | 2.2:+38365476 | None:intergenic |
GGATGCAAAGTGGAGGTAAC+AGG | 0.349529 | 2.2:-38364477 | MS.gene033864:CDS |
AGAGAAGAGGAAGAGCTTAA+TGG | 0.349757 | 2.2:-38364523 | MS.gene033864:CDS |
AACGAAGGTGAGCATGATTC+AGG | 0.351519 | 2.2:-38365387 | MS.gene033864:CDS |
TGCGGACTTGCGTCCCAGTA+TGG | 0.354493 | 2.2:-38365613 | MS.gene033864:CDS |
GCTCTATTGCAGAGGCTTCC+GGG | 0.355234 | 2.2:-38370311 | MS.gene033864:CDS |
CAAAATTGCCCCTGCTGGCC+TGG | 0.356674 | 2.2:-38369789 | MS.gene033864:CDS |
GGGTTGGAACTAAATGACTA+TGG | 0.358064 | 2.2:-38367801 | MS.gene033864:CDS |
GGCTTCCGGGTTGTGTGAGC+CGG | 0.363007 | 2.2:-38370298 | MS.gene033864:CDS |
TGGCGTAAGCAAGGAGGTTC+AGG | 0.365194 | 2.2:-38364698 | MS.gene033864:CDS |
TTTCTAGGACTTTCTGTCAC+TGG | 0.365462 | 2.2:-38372936 | MS.gene033864:CDS |
AGGCCTCTCAGGATTCAAAT+TGG | 0.365482 | 2.2:+38377048 | None:intergenic |
TGTGTCTTCATCGTCCCATA+TGG | 0.366253 | 2.2:+38371569 | None:intergenic |
GAGGAAGAGCTTAATGGATT+GGG | 0.370130 | 2.2:-38364517 | MS.gene033864:CDS |
GAGTAATGATCAACCTTATA+CGG | 0.373956 | 2.2:+38366543 | None:intergenic |
CTCTCTGAGCTTTCTCCCTC+AGG | 0.375508 | 2.2:+38370464 | None:intergenic |
AGTTAATGAGCAATCTGTTA+AGG | 0.378588 | 2.2:-38371316 | MS.gene033864:CDS |
GGAACCAGTGGCAGGGGTGG+TGG | 0.381144 | 2.2:-38364427 | MS.gene033864:CDS |
AGAAGTGTAACGGACCATAC+TGG | 0.385494 | 2.2:+38365599 | None:intergenic |
AGACATTAAGAGGCTTATCT+TGG | 0.390763 | 2.2:-38364557 | MS.gene033864:CDS |
TGATATACAAGCAGCAGTTC+AGG | 0.395227 | 2.2:-38374349 | MS.gene033864:intron |
TTGCATCCAGTTCGAAGGTT+GGG | 0.396626 | 2.2:+38364492 | None:intergenic |
CAGCTCTCTGAAACTTCTAT+TGG | 0.397652 | 2.2:-38373105 | MS.gene033864:CDS |
CAAAATCAGCTTCTTCTAAT+GGG | 0.399690 | 2.2:+38365205 | None:intergenic |
CGGCATCATCACTACTATAC+TGG | 0.400826 | 2.2:-38364394 | MS.gene033864:CDS |
ATGACTAAAATCATCTAAAC+AGG | 0.405025 | 2.2:+38369067 | None:intergenic |
TTTGTTGGGGTTATTGAAGA+TGG | 0.408634 | 2.2:-38373074 | MS.gene033864:CDS |
AAGCAAAGGTGCACTGCCTC+TGG | 0.409212 | 2.2:-38366432 | MS.gene033864:CDS |
TCTTTGTCTCAATATTCATC+TGG | 0.414622 | 2.2:+38369849 | None:intergenic |
AGAGGAAGAGCTTAATGGAT+TGG | 0.415516 | 2.2:-38364518 | MS.gene033864:CDS |
GGAGGTTCAGGTGAAAGTTC+TGG | 0.415582 | 2.2:-38364686 | MS.gene033864:CDS |
CACCCTTCTATTGCAGATGT+TGG | 0.420723 | 2.2:-38370008 | MS.gene033864:CDS |
TCCTCTCCCATGATGATCCT+TGG | 0.425833 | 2.2:+38364762 | None:intergenic |
CTCAGTGTGAATGGAAGATA+AGG | 0.426469 | 2.2:-38377668 | None:intergenic |
CCCTTCTTTCTAGCTTTGCT+CGG | 0.428839 | 2.2:-38372971 | MS.gene033864:CDS |
TATACCGTTGGAAGTGCATC+AGG | 0.429347 | 2.2:+38366459 | None:intergenic |
CTTGTTGTGTGCCCATCCTC+TGG | 0.430183 | 2.2:+38371654 | None:intergenic |
TTCTGTTGTTGAACCCATAT+GGG | 0.430729 | 2.2:-38371583 | MS.gene033864:CDS |
TGCAGTATTGCGCTTAATGC+TGG | 0.430875 | 2.2:+38374503 | None:intergenic |
AGAGGAACTGGTGGGGAAAG+TGG | 0.431762 | 2.2:-38364745 | MS.gene033864:CDS |
GAGGCTGTTTCTTCTGCTGC+CGG | 0.434248 | 2.2:-38371615 | MS.gene033864:CDS |
GTGTCTTCATCGTCCCATAT+GGG | 0.435010 | 2.2:+38371570 | None:intergenic |
GAAGCCTTAGACGAGGATAC+TGG | 0.437966 | 2.2:-38364718 | MS.gene033864:CDS |
GTTAATGAGCAATCTGTTAA+GGG | 0.438718 | 2.2:-38371315 | MS.gene033864:CDS |
CCTTATCAGTAGAAACTATT+CGG | 0.440670 | 2.2:+38365532 | None:intergenic |
TTTGTGCCAACTCTGATTCA+AGG | 0.442885 | 2.2:-38373206 | MS.gene033864:CDS |
CCGAATAGTTTCTACTGATA+AGG | 0.442891 | 2.2:-38365532 | MS.gene033864:CDS |
TTCTAGGACTTTCTGTCACT+GGG | 0.443421 | 2.2:-38372935 | MS.gene033864:CDS |
GATCATCATGGGAGAGGAAC+TGG | 0.445075 | 2.2:-38364757 | MS.gene033864:CDS |
AACAACAGAAGAATCTTTCC+CGG | 0.445314 | 2.2:+38371596 | None:intergenic |
GTGGAAGTGCTCCTACTTAA+GGG | 0.446252 | 2.2:+38365477 | None:intergenic |
AGGAGAAAGAAGACATTAAG+AGG | 0.447963 | 2.2:-38364567 | MS.gene033864:CDS |
GGTAACAGGGTTGGTGGTCG+TGG | 0.450556 | 2.2:-38364463 | MS.gene033864:CDS |
ATCTAAATTCAAAATCAAAT+CGG | 0.451137 | 2.2:-38370138 | MS.gene033864:CDS |
AAGTTCAAAATTGCCCCTGC+TGG | 0.451423 | 2.2:-38369794 | MS.gene033864:CDS |
CTCATTATTGTCTTTGGCCA+TGG | 0.452245 | 2.2:-38367684 | MS.gene033864:CDS |
CCTTCTATTGCAGATGTTGG+AGG | 0.454459 | 2.2:-38370005 | MS.gene033864:CDS |
CAACTGAAGACCAGGCCAGC+AGG | 0.455635 | 2.2:+38369779 | None:intergenic |
TCACTGTTAATTGATCTATA+AGG | 0.459537 | 2.2:+38370273 | None:intergenic |
AGAGCAGCGTGAATCATTGA+TGG | 0.460071 | 2.2:-38374451 | MS.gene033864:CDS |
CTGCACCAGTGAGGAATCAC+TGG | 0.461717 | 2.2:+38364621 | None:intergenic |
AGTCCGTCCTCCGTTGCATC+AGG | 0.464372 | 2.2:-38368838 | MS.gene033864:intron |
ATTCCAATGAATGTATTTGA+AGG | 0.464880 | 2.2:-38364790 | MS.gene033864:CDS |
GGAGGAGATTAGAATTGGGT+TGG | 0.465727 | 2.2:-38367817 | MS.gene033864:CDS |
GAAAACTAACCAGGCCTCTC+AGG | 0.466190 | 2.2:+38377037 | None:intergenic |
TACGCCAGTATCCTCGTCTA+AGG | 0.469490 | 2.2:+38364714 | None:intergenic |
TGAATATTGAGACAAAGATC+AGG | 0.473258 | 2.2:-38369844 | MS.gene033864:CDS |
ACAGCGACGACTGGAGCTAC+GGG | 0.474334 | 2.2:-38364836 | MS.gene033864:CDS |
TCCAGAAACTAGTATACGTA+TGG | 0.476760 | 2.2:-38368985 | MS.gene033864:CDS |
TGATCCACCACCCCTGCCAC+TGG | 0.478398 | 2.2:+38364423 | None:intergenic |
TCGATTTCTTGATTTCTTCG+AGG | 0.478963 | 2.2:+38377098 | None:intergenic |
GTGGCAGGGGTGGTGGATCA+CGG | 0.485337 | 2.2:-38364420 | MS.gene033864:CDS |
AACAGCGACGACTGGAGCTA+CGG | 0.489283 | 2.2:-38364837 | MS.gene033864:CDS |
GCTTCCGGGTTGTGTGAGCC+GGG | 0.491255 | 2.2:-38370297 | MS.gene033864:CDS |
TGGAGACCTCTCCACTGTCA+AGG | 0.492129 | 2.2:+38370504 | None:intergenic |
GTGTGGAACAGCTGAAAGAT+CGG | 0.496056 | 2.2:-38373016 | MS.gene033864:CDS |
ATGAGACATTACGGTACAAA+TGG | 0.496308 | 2.2:+38372320 | None:intergenic |
TGGTTGCATCTCTTGCTGCT+GGG | 0.500735 | 2.2:-38368271 | MS.gene033864:CDS |
CAACTTACGATGAGACATTA+CGG | 0.501548 | 2.2:+38372311 | None:intergenic |
ATTACGGTACAAATGGTCAT+AGG | 0.502561 | 2.2:+38372327 | None:intergenic |
AAGGTTCACAAAGGAAAGTA+TGG | 0.503810 | 2.2:-38368305 | MS.gene033864:CDS |
GGAAATACAAACCTAAGATC+AGG | 0.505940 | 2.2:+38371525 | None:intergenic |
CAGAGGATGGGCACACAACA+AGG | 0.506900 | 2.2:-38371653 | MS.gene033864:CDS |
GATGAGGAGAATCATGATGA+TGG | 0.509747 | 2.2:-38365321 | MS.gene033864:CDS |
GGGGTGGTGGATCACGGCAT+CGG | 0.509909 | 2.2:-38364414 | MS.gene033864:CDS |
GGAATCATCATGTTCAATGT+AGG | 0.512199 | 2.2:+38364808 | None:intergenic |
TATGATTTCTTACGGTTGGT+TGG | 0.513524 | 2.2:+38371286 | None:intergenic |
AAGTATGGAACAGCGACGAC+TGG | 0.514104 | 2.2:-38364845 | MS.gene033864:CDS |
GGAGCTCAAGGCTGTCGTAC+AGG | 0.517311 | 2.2:-38365178 | MS.gene033864:intron |
TTTGAAGGAACCAGTGGCAG+GGG | 0.517859 | 2.2:-38364433 | MS.gene033864:CDS |
TTTGCTTCATCAAAGGTACA+AGG | 0.518063 | 2.2:-38373231 | MS.gene033864:CDS |
TGTGGAACAGCTGAAAGATC+GGG | 0.518687 | 2.2:-38373015 | MS.gene033864:CDS |
TTTGCATCCAGTTCGAAGGT+TGG | 0.523409 | 2.2:+38364491 | None:intergenic |
AGGCTGTTTCTTCTGCTGCC+GGG | 0.525303 | 2.2:-38371614 | MS.gene033864:CDS |
GCCGAGCAAAGCTAGAAAGA+AGG | 0.527265 | 2.2:+38372970 | None:intergenic |
AGAAGTCCTTGAATCAGAGT+TGG | 0.528085 | 2.2:+38373200 | None:intergenic |
TGCTGTAGCTATAGTTGATG+AGG | 0.528816 | 2.2:-38368225 | MS.gene033864:intron |
AACTGAAGACCAGGCCAGCA+GGG | 0.528945 | 2.2:+38369780 | None:intergenic |
ATCTTTCAGGTGGCTTGCAA+AGG | 0.529139 | 2.2:+38368877 | None:intergenic |
CAGATCAAAAGAAAGTTATC+CGG | 0.529810 | 2.2:-38372659 | MS.gene033864:CDS |
GAAGTGTAACGGACCATACT+GGG | 0.529963 | 2.2:+38365600 | None:intergenic |
CTTTCTAGCTTTGCTCGGCA+AGG | 0.530334 | 2.2:-38372966 | MS.gene033864:CDS |
GAAGGAACCAGTGGCAGGGG+TGG | 0.530995 | 2.2:-38364430 | MS.gene033864:CDS |
TCTCCACTGTCAAGGGTGAT+CGG | 0.531104 | 2.2:+38370512 | None:intergenic |
CAGCAGCAAGAGATGCAACC+AGG | 0.535737 | 2.2:+38368273 | None:intergenic |
TTGCCTCAGCACATGCTCAA+TGG | 0.535973 | 2.2:+38368382 | None:intergenic |
CCACTTTGCATCCAGTTCGA+AGG | 0.536955 | 2.2:+38364487 | None:intergenic |
CCTCCTGTAATGCCAGAGGA+TGG | 0.537913 | 2.2:-38371666 | MS.gene033864:CDS |
GCGCTTAATGCTGGAATCCA+AGG | 0.540739 | 2.2:+38374512 | None:intergenic |
GTTGGGGTTATTGAAGATGG+TGG | 0.542765 | 2.2:-38373071 | MS.gene033864:CDS |
TCCTAGACATAGCACTTTGG+TGG | 0.543596 | 2.2:-38368913 | MS.gene033864:CDS |
TATACGTATGGGTAACATGT+TGG | 0.545107 | 2.2:-38368973 | MS.gene033864:CDS |
TGAGGATGACGATGAGGATG+AGG | 0.545434 | 2.2:-38365289 | MS.gene033864:CDS |
CTGTCACCTTCTGTCTCACA+TGG | 0.545525 | 2.2:+38365235 | None:intergenic |
GGAGTATAATGATAGAGAAG+AGG | 0.545688 | 2.2:-38364536 | MS.gene033864:CDS |
TACACTCTCAACTTGTATGA+AGG | 0.547545 | 2.2:-38370038 | MS.gene033864:CDS |
ATGAGGAGAATCATGATGAT+GGG | 0.547671 | 2.2:-38365320 | MS.gene033864:CDS |
TGTGGCCATTACTTTGATCA+CGG | 0.547922 | 2.2:-38366509 | MS.gene033864:CDS |
TTAATTGATCTATAAGGTCC+CGG | 0.548986 | 2.2:+38370279 | None:intergenic |
GTTTCTCCCAAAAGCACAGC+AGG | 0.550419 | 2.2:+38371348 | None:intergenic |
AGGACATGATGATGAAGAGT+TGG | 0.552698 | 2.2:-38365343 | MS.gene033864:CDS |
CTGGAGACCGATACAGAAAA+CGG | 0.552752 | 2.2:+38369003 | None:intergenic |
TTTGATCTGCCGTGATGTTG+AGG | 0.553898 | 2.2:+38372673 | None:intergenic |
CATCACTACTATACTGGCGG+TGG | 0.554328 | 2.2:-38364388 | MS.gene033864:CDS |
CTATATGTGATGCAAAACTT+AGG | 0.554740 | 2.2:-38374377 | MS.gene033864:CDS |
ACGAAGGTGAGCATGATTCA+GGG | 0.555778 | 2.2:-38365386 | MS.gene033864:CDS |
GGATCAGCCAAGGATCATCA+TGG | 0.556818 | 2.2:-38364769 | MS.gene033864:CDS |
CATCCCCAGTGATTCCTCAC+TGG | 0.556900 | 2.2:-38364626 | MS.gene033864:CDS |
GCACCTGATGCAACGGAGGA+CGG | 0.557412 | 2.2:+38368835 | None:intergenic |
TCAGTGTGAATGGAAGATAA+GGG | 0.560394 | 2.2:-38377667 | None:intergenic |
ATTCTGAAACAGTTTATGAA+AGG | 0.560888 | 2.2:-38372696 | MS.gene033864:intron |
AGTGGAGGTAACAGGGTTGG+TGG | 0.561747 | 2.2:-38364469 | MS.gene033864:CDS |
CCTTCAAACAACTGAAGACC+AGG | 0.562872 | 2.2:+38369771 | None:intergenic |
GTGAATGGAAGATAAGGGTA+TGG | 0.563370 | 2.2:-38377662 | None:intergenic |
TGATGATGAAGAGTTGGATG+AGG | 0.563413 | 2.2:-38365337 | MS.gene033864:CDS |
TCATCTTCATCATCAGAAGC+AGG | 0.563703 | 2.2:+38365261 | None:intergenic |
AGGTAAAACGCTAGATTCTG+TGG | 0.563772 | 2.2:+38370484 | None:intergenic |
AACGGCCACATGTTTCAAGA+AGG | 0.564399 | 2.2:+38369021 | None:intergenic |
CTCCTGTAATGCCAGAGGAT+GGG | 0.565045 | 2.2:-38371665 | MS.gene033864:CDS |
CGAGGATACTGGCGTAAGCA+AGG | 0.566261 | 2.2:-38364707 | MS.gene033864:CDS |
CTTTGCTTAAAATATACCGT+TGG | 0.567375 | 2.2:+38366447 | None:intergenic |
TCCACCACGATGGTCGGCAA+TGG | 0.568467 | 2.2:-38365459 | MS.gene033864:CDS |
GCCAAGGATCATCATGGGAG+AGG | 0.568615 | 2.2:-38364763 | MS.gene033864:CDS |
TCTATTGCAGATGTTGGAGG+AGG | 0.571013 | 2.2:-38370002 | MS.gene033864:CDS |
GAAGATGAATGTCGCAATGA+AGG | 0.571790 | 2.2:-38377631 | MS.gene033864:CDS |
TATGCTCTTTGCTTCATCAA+AGG | 0.571945 | 2.2:-38373238 | MS.gene033864:CDS |
CAAATTTGTTAGTGAAGCAG+TGG | 0.576881 | 2.2:-38374403 | MS.gene033864:CDS |
AATTTGAATCCTGAGAGGCC+TGG | 0.577750 | 2.2:-38377046 | MS.gene033864:intron |
TGAGGAGAATCATGATGATG+GGG | 0.577826 | 2.2:-38365319 | MS.gene033864:CDS |
GGAGACCTCTCCACTGTCAA+GGG | 0.578879 | 2.2:+38370505 | None:intergenic |
ATGACTATGGGATGCAACAA+AGG | 0.579842 | 2.2:-38367788 | MS.gene033864:CDS |
CATAAAAGATCTTACTAGTG+TGG | 0.580201 | 2.2:-38373033 | MS.gene033864:CDS |
CCAATACCTCAGGTGTTCCA+TGG | 0.580271 | 2.2:+38367667 | None:intergenic |
CCGAGCAAAGCTAGAAAGAA+GGG | 0.580504 | 2.2:+38372971 | None:intergenic |
GGATATACTATAGCAGAAGA+AGG | 0.580622 | 2.2:-38364366 | MS.gene033864:CDS |
AGGAAGAGCTTAATGGATTG+GGG | 0.581199 | 2.2:-38364516 | MS.gene033864:CDS |
TGCAACCTTCTTGAAACATG+TGG | 0.583457 | 2.2:-38369026 | MS.gene033864:CDS |
ATCACTACTATACTGGCGGT+GGG | 0.584025 | 2.2:-38364387 | MS.gene033864:CDS |
TGAGGTGAATGCAGCTCTAG+TGG | 0.585555 | 2.2:-38365571 | MS.gene033864:CDS |
TCCACCAAAGTGCTATGTCT+AGG | 0.586953 | 2.2:+38368912 | None:intergenic |
CAAAGTGGAGGTAACAGGGT+TGG | 0.587714 | 2.2:-38364472 | MS.gene033864:CDS |
CATCATGGGAGAGGAACTGG+TGG | 0.588689 | 2.2:-38364754 | MS.gene033864:CDS |
ATTACTCTACTTGAAACTTG+TGG | 0.588697 | 2.2:-38366527 | MS.gene033864:CDS |
CCATCCTCTGGCATTACAGG+AGG | 0.590727 | 2.2:+38371666 | None:intergenic |
CTCCAACATCTGCAATAGAA+GGG | 0.594871 | 2.2:+38370006 | None:intergenic |
AGCACTTCCACCACGATGGT+CGG | 0.596052 | 2.2:-38365465 | MS.gene033864:CDS |
GGATCCTAGACATAGCACTT+TGG | 0.598459 | 2.2:-38368916 | MS.gene033864:CDS |
AGGTCCCGGCTCACACAACC+CGG | 0.599849 | 2.2:+38370293 | None:intergenic |
AAGCATTGCACCTGATGCAA+CGG | 0.601263 | 2.2:+38368828 | None:intergenic |
AAGAGCCGTGATCAAAGTAA+TGG | 0.602053 | 2.2:+38366504 | None:intergenic |
ATTTGGATGCTCTATTGCAG+AGG | 0.602843 | 2.2:-38370319 | MS.gene033864:CDS |
TGCAGCTCTAGTGGAACTTG+AGG | 0.605864 | 2.2:-38365562 | MS.gene033864:CDS |
GAACAATGATAACAGCATTG+AGG | 0.606969 | 2.2:-38365433 | MS.gene033864:CDS |
CCAGAAACTAGTATACGTAT+GGG | 0.610913 | 2.2:-38368984 | MS.gene033864:CDS |
TAACAACAAACAAGATGATG+AGG | 0.611333 | 2.2:-38377602 | MS.gene033864:intron |
ACACTGATAAGCCCTTAAGT+AGG | 0.613110 | 2.2:-38365488 | MS.gene033864:CDS |
TCATGGGAGAGGAACTGGTG+GGG | 0.617031 | 2.2:-38364752 | MS.gene033864:CDS |
TGCACCAGTGAGGAATCACT+GGG | 0.618012 | 2.2:+38364622 | None:intergenic |
GAGTACGAAACAGAAAGAAG+CGG | 0.619546 | 2.2:-38364599 | MS.gene033864:CDS |
GATCAGCCAAGGATCATCAT+GGG | 0.621025 | 2.2:-38364768 | MS.gene033864:CDS |
TACAGTTCACAATCACTCCA+TGG | 0.621174 | 2.2:+38368347 | None:intergenic |
CCGTTACACTTCTGTTGATG+AGG | 0.622367 | 2.2:-38365589 | MS.gene033864:CDS |
CCTTCGAACTGGATGCAAAG+TGG | 0.623565 | 2.2:-38364487 | MS.gene033864:CDS |
TGAAGTCCATGTGAGACAGA+AGG | 0.623809 | 2.2:-38365241 | MS.gene033864:CDS |
TCCATTGCCGACCATCGTGG+TGG | 0.624060 | 2.2:+38365458 | None:intergenic |
GGTTGGAACTAAATGACTAT+GGG | 0.624254 | 2.2:-38367800 | MS.gene033864:CDS |
ACTGAAGACCAGGCCAGCAG+GGG | 0.624266 | 2.2:+38369781 | None:intergenic |
TACTTAAGGGCTTATCAGTG+TGG | 0.625135 | 2.2:+38365490 | None:intergenic |
TGTATTTGAAGGATCAGCCA+AGG | 0.629210 | 2.2:-38364779 | MS.gene033864:CDS |
GATGCAAAGTGGAGGTAACA+GGG | 0.629998 | 2.2:-38364476 | MS.gene033864:CDS |
AGCAGTTCTAGAGAAGTCCT+TGG | 0.631372 | 2.2:+38370085 | None:intergenic |
TAAAGAGTCGAACAGAGACA+AGG | 0.633001 | 2.2:-38370411 | MS.gene033864:CDS |
ACTTAAGGGCTTATCAGTGT+GGG | 0.633496 | 2.2:+38365491 | None:intergenic |
AAGGGTTACTAGTGGTGAGG+AGG | 0.639724 | 2.2:-38371634 | MS.gene033864:CDS |
GAGGAGAATCATGATGATGG+GGG | 0.641734 | 2.2:-38365318 | MS.gene033864:CDS |
TATGAAAGGCCTCAACATCA+CGG | 0.642344 | 2.2:-38372682 | MS.gene033864:CDS |
GTGAAAGTTCTGGTGAAGCG+TGG | 0.644498 | 2.2:-38364676 | MS.gene033864:CDS |
GGTTCCTGATGCACTTCCAA+CGG | 0.646015 | 2.2:-38366463 | MS.gene033864:CDS |
CTTTGGCCATGGAACACCTG+AGG | 0.647293 | 2.2:-38367673 | MS.gene033864:intron |
ACTCGTGCAGATCTTTCAGG+TGG | 0.647599 | 2.2:+38368867 | None:intergenic |
CCTCATCAACAGAAGTGTAA+CGG | 0.648260 | 2.2:+38365589 | None:intergenic |
TCATCATGTTCAATGTAGGA+CGG | 0.648296 | 2.2:+38364812 | None:intergenic |
AACAAGGGTTACTAGTGGTG+AGG | 0.650591 | 2.2:-38371637 | MS.gene033864:CDS |
ATCATGGGAGAGGAACTGGT+GGG | 0.652877 | 2.2:-38364753 | MS.gene033864:CDS |
GGCAACTTCGTAAATTACCA+TGG | 0.654774 | 2.2:-38368364 | MS.gene033864:CDS |
CATTGCACCTGATGCAACGG+AGG | 0.655031 | 2.2:+38368831 | None:intergenic |
CGACCATTGAGCATGTGCTG+AGG | 0.655648 | 2.2:-38368385 | MS.gene033864:CDS |
CAACCGATCACCCTTGACAG+TGG | 0.656054 | 2.2:-38370515 | MS.gene033864:CDS |
CATCATCACTACTATACTGG+CGG | 0.661568 | 2.2:-38364391 | MS.gene033864:CDS |
AAAGTATGGTCAGATCCACC+TGG | 0.665259 | 2.2:-38368291 | MS.gene033864:CDS |
CAACATCTGCAATAGAAGGG+TGG | 0.667392 | 2.2:+38370009 | None:intergenic |
TGGGCCAGAAATTCACGAAG+AGG | 0.669630 | 2.2:-38372916 | MS.gene033864:intron |
GCAGCCTCCTGTAATGCCAG+AGG | 0.675002 | 2.2:-38371670 | MS.gene033864:CDS |
AGTGACGTAATCGATGCAGA+AGG | 0.676160 | 2.2:-38365363 | MS.gene033864:CDS |
CAGCAAGAGATGCAACCAGG+TGG | 0.678002 | 2.2:+38368276 | None:intergenic |
AAGTCAAATTCAACATCCAG+AGG | 0.678222 | 2.2:+38366416 | None:intergenic |
GATGACGATGAGGATGAGGA+CGG | 0.678423 | 2.2:-38365285 | MS.gene033864:CDS |
GGGCTTTGTTCAGTGTACCA+AGG | 0.681939 | 2.2:-38370102 | MS.gene033864:CDS |
GGAAGAGCTTAATGGATTGG+GGG | 0.681977 | 2.2:-38364515 | MS.gene033864:CDS |
AGAAATCAAGAAATCGATCG+AGG | 0.686215 | 2.2:-38377092 | MS.gene033864:CDS |
AGAGGATGGGCACACAACAA+GGG | 0.689305 | 2.2:-38371652 | MS.gene033864:CDS |
TAGGAGCACTTCCACCACGA+TGG | 0.695671 | 2.2:-38365469 | MS.gene033864:CDS |
TCGAACTGGATGCAAAGTGG+AGG | 0.696246 | 2.2:-38364484 | MS.gene033864:CDS |
TGCTTCATGAAGGTTCACAA+AGG | 0.698077 | 2.2:-38368314 | MS.gene033864:CDS |
TATGGGACGATGAAGACACA+AGG | 0.699857 | 2.2:-38371566 | MS.gene033864:CDS |
GTGCAAGACAATGTCAACGA+AGG | 0.701866 | 2.2:-38365402 | MS.gene033864:CDS |
CACACAACAAGGGTTACTAG+TGG | 0.702379 | 2.2:-38371642 | MS.gene033864:CDS |
TTTCGTACTCTGCACCAGTG+AGG | 0.709604 | 2.2:+38364612 | None:intergenic |
GCTAGCGTATTACTCACGCA+TGG | 0.710064 | 2.2:-38370065 | MS.gene033864:CDS |
GATCACCCTTGACAGTGGAG+AGG | 0.714983 | 2.2:-38370510 | MS.gene033864:CDS |
AAACCAATTTGAATCCTGAG+AGG | 0.716093 | 2.2:-38377051 | MS.gene033864:CDS |
CTGTCCATTGCCGACCATCG+TGG | 0.721549 | 2.2:+38365455 | None:intergenic |
CAGCGACGACTGGAGCTACG+GGG | 0.724546 | 2.2:-38364835 | MS.gene033864:CDS |
ATGGGACGATGAAGACACAA+GGG | 0.726512 | 2.2:-38371565 | MS.gene033864:CDS |
TGAGACTGAGGATGACGATG+AGG | 0.736845 | 2.2:-38365295 | MS.gene033864:CDS |
TGGTGACGAAGCCTTAGACG+AGG | 0.737428 | 2.2:-38364725 | MS.gene033864:CDS |
GGATACTGGCGTAAGCAAGG+AGG | 0.743542 | 2.2:-38364704 | MS.gene033864:CDS |
GCACCAGTGAGGAATCACTG+GGG | 0.826437 | 2.2:+38364623 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 38364363 | 38377680 | 38364363 | ID=MS.gene033864 |
chr2.2 | mRNA | 38364363 | 38377680 | 38364363 | ID=MS.gene033864.t1;Parent=MS.gene033864 |
chr2.2 | exon | 38377603 | 38377680 | 38377603 | ID=MS.gene033864.t1.exon1;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38377603 | 38377680 | 38377603 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38377047 | 38377134 | 38377047 | ID=MS.gene033864.t1.exon2;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38377047 | 38377134 | 38377047 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38374350 | 38374552 | 38374350 | ID=MS.gene033864.t1.exon3;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38374350 | 38374552 | 38374350 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38372917 | 38373261 | 38372917 | ID=MS.gene033864.t1.exon4;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38372917 | 38373261 | 38372917 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38372602 | 38372706 | 38372602 | ID=MS.gene033864.t1.exon5;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38372602 | 38372706 | 38372602 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38372319 | 38372446 | 38372319 | ID=MS.gene033864.t1.exon6;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38372319 | 38372446 | 38372319 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38371537 | 38371713 | 38371537 | ID=MS.gene033864.t1.exon7;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38371537 | 38371713 | 38371537 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38371299 | 38371380 | 38371299 | ID=MS.gene033864.t1.exon8;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38371299 | 38371380 | 38371299 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38370277 | 38370564 | 38370277 | ID=MS.gene033864.t1.exon9;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38370277 | 38370564 | 38370277 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38369976 | 38370173 | 38369976 | ID=MS.gene033864.t1.exon10;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38369976 | 38370173 | 38369976 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38369772 | 38369873 | 38369772 | ID=MS.gene033864.t1.exon11;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38369772 | 38369873 | 38369772 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38368839 | 38369090 | 38368839 | ID=MS.gene033864.t1.exon12;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38368839 | 38369090 | 38368839 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38368226 | 38368444 | 38368226 | ID=MS.gene033864.t1.exon13;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38368226 | 38368444 | 38368226 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38367674 | 38367844 | 38367674 | ID=MS.gene033864.t1.exon14;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38367674 | 38367844 | 38367674 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38366412 | 38366597 | 38366412 | ID=MS.gene033864.t1.exon15;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38366412 | 38366597 | 38366412 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38365179 | 38365643 | 38365179 | ID=MS.gene033864.t1.exon16;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38365179 | 38365643 | 38365179 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
chr2.2 | exon | 38364363 | 38364869 | 38364363 | ID=MS.gene033864.t1.exon17;Parent=MS.gene033864.t1 |
chr2.2 | CDS | 38364363 | 38364869 | 38364363 | ID=cds.MS.gene033864.t1;Parent=MS.gene033864.t1 |
Gene Sequence |
Protein sequence |