Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005005.t1 | XP_013468838.1 | 90.9 | 319 | 28 | 1 | 1 | 318 | 1 | 319 | 3.00E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005005.t1 | Q8RX86 | 77.9 | 271 | 60 | 0 | 48 | 318 | 31 | 301 | 4.1e-133 | 475.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005005.t1 | A0A072VXV5 | 90.9 | 319 | 28 | 1 | 1 | 318 | 1 | 319 | 2.1e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005005 | MS.gene06516 | PPI |
| MS.gene036942 | MS.gene005005 | PPI |
| MS.gene005005 | MS.gene013419 | PPI |
| MS.gene27500 | MS.gene005005 | PPI |
| MS.gene005005 | MS.gene87685 | PPI |
| MS.gene005005 | MS.gene27501 | PPI |
| MS.gene87684 | MS.gene005005 | PPI |
| MS.gene005005 | MS.gene049391 | PPI |
| MS.gene005005 | MS.gene92764 | PPI |
| MS.gene005005 | MS.gene036941 | PPI |
| MS.gene059347 | MS.gene005005 | PPI |
| MS.gene92763 | MS.gene005005 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005005.t1 | MTR_1g077480 | 90.909 | 319 | 28 | 1 | 1 | 318 | 1 | 319 | 0.0 | 615 |
| MS.gene005005.t1 | MTR_6g086625 | 90.596 | 319 | 23 | 2 | 1 | 318 | 1 | 313 | 0.0 | 600 |
| MS.gene005005.t1 | MTR_6g086575 | 88.401 | 319 | 29 | 2 | 1 | 318 | 1 | 312 | 0.0 | 582 |
| MS.gene005005.t1 | MTR_1g077520 | 78.797 | 316 | 63 | 1 | 3 | 318 | 4 | 315 | 0.0 | 535 |
| MS.gene005005.t1 | MTR_1g077520 | 78.797 | 316 | 63 | 1 | 3 | 318 | 4 | 315 | 0.0 | 534 |
| MS.gene005005.t1 | MTR_6g069140 | 75.676 | 296 | 71 | 1 | 23 | 318 | 33 | 327 | 3.94e-172 | 484 |
| MS.gene005005.t1 | MTR_7g073640 | 63.091 | 317 | 108 | 2 | 5 | 321 | 9 | 316 | 7.05e-147 | 420 |
| MS.gene005005.t1 | MTR_7g073650 | 68.953 | 277 | 86 | 0 | 42 | 318 | 36 | 312 | 9.36e-146 | 417 |
| MS.gene005005.t1 | MTR_3g094160 | 67.153 | 274 | 89 | 1 | 47 | 320 | 59 | 331 | 1.12e-139 | 402 |
| MS.gene005005.t1 | MTR_1g078410 | 71.698 | 212 | 9 | 1 | 1 | 212 | 1 | 161 | 3.00e-100 | 293 |
| MS.gene005005.t1 | MTR_3g086580 | 25.245 | 408 | 195 | 13 | 3 | 319 | 2 | 390 | 1.24e-22 | 99.0 |
| MS.gene005005.t1 | MTR_2g096530 | 28.080 | 349 | 161 | 12 | 57 | 318 | 40 | 385 | 4.46e-22 | 97.4 |
| MS.gene005005.t1 | MTR_8g089725 | 27.794 | 349 | 162 | 13 | 57 | 318 | 38 | 383 | 3.83e-21 | 94.4 |
| MS.gene005005.t1 | MTR_8g089735 | 27.794 | 349 | 162 | 13 | 57 | 318 | 38 | 383 | 5.64e-21 | 93.6 |
| MS.gene005005.t1 | MTR_8g089745 | 26.184 | 359 | 175 | 12 | 45 | 318 | 29 | 382 | 1.21e-20 | 92.4 |
| MS.gene005005.t1 | MTR_8g089740 | 26.389 | 360 | 174 | 12 | 45 | 318 | 24 | 378 | 1.76e-20 | 92.4 |
| MS.gene005005.t1 | MTR_8g089745 | 26.184 | 359 | 175 | 12 | 45 | 318 | 29 | 382 | 2.61e-20 | 92.0 |
| MS.gene005005.t1 | MTR_3g086580 | 30.556 | 180 | 96 | 6 | 167 | 319 | 26 | 203 | 6.63e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005005.t1 | AT5G08370 | 77.860 | 271 | 60 | 0 | 48 | 318 | 31 | 301 | 1.28e-164 | 464 |
| MS.gene005005.t1 | AT5G08370 | 77.860 | 271 | 60 | 0 | 48 | 318 | 5 | 275 | 2.99e-164 | 462 |
| MS.gene005005.t1 | AT5G08380 | 62.342 | 316 | 115 | 2 | 3 | 318 | 4 | 315 | 6.81e-145 | 411 |
| MS.gene005005.t1 | AT5G08380 | 62.342 | 316 | 115 | 2 | 3 | 318 | 4 | 315 | 7.83e-144 | 412 |
| MS.gene005005.t1 | AT3G56310 | 60.125 | 321 | 120 | 3 | 5 | 318 | 14 | 333 | 1.95e-138 | 399 |
| MS.gene005005.t1 | AT3G56310 | 55.452 | 321 | 111 | 4 | 5 | 318 | 14 | 309 | 7.43e-120 | 351 |
| MS.gene005005.t1 | AT3G26380 | 26.648 | 349 | 166 | 12 | 57 | 318 | 42 | 387 | 1.09e-21 | 95.5 |
| MS.gene005005.t1 | AT3G26380 | 26.648 | 349 | 166 | 12 | 57 | 318 | 42 | 387 | 2.43e-21 | 95.1 |
Find 99 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGCTGCTCGTTTATT+AGG | 0.209748 | 1.3:-56175256 | MS.gene005005:CDS |
| GGGTACACATATATTAATTT+AGG | 0.227912 | 1.3:-56174779 | MS.gene005005:intron |
| TTTAAGATGTTAGGGAAATA+TGG | 0.234155 | 1.3:-56174046 | MS.gene005005:intron |
| ATCGTTCCCATTTCAGCATT+TGG | 0.256283 | 1.3:-56172770 | MS.gene005005:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 1.3:-56173771 | MS.gene005005:CDS |
| AAGAGTTATTTGTTACAAAA+TGG | 0.275729 | 1.3:-56175190 | MS.gene005005:CDS |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 1.3:-56173770 | MS.gene005005:intron |
| ACACTCTTGGCCCATGTTGC+CGG | 0.305534 | 1.3:+56173253 | None:intergenic |
| TTTCCAACTTCGAGCATATC+AGG | 0.306089 | 1.3:+56172816 | None:intergenic |
| ATATTACAACCAACTAATAA+AGG | 0.326535 | 1.3:+56172645 | None:intergenic |
| TGGTCTTCCAGAGTTTAATA+AGG | 0.329973 | 1.3:+56173464 | None:intergenic |
| TCGTTCCCATTTCAGCATTT+GGG | 0.348092 | 1.3:-56172769 | MS.gene005005:CDS |
| CACATGAAAGGCTTGAAGTT+GGG | 0.350279 | 1.3:-56173970 | MS.gene005005:CDS |
| TTTAATAAGGCTTCACTCAT+TGG | 0.352747 | 1.3:+56173477 | None:intergenic |
| CTAGGGCCCAAATGCTGAAA+TGG | 0.363601 | 1.3:+56172763 | None:intergenic |
| CAGGAGATATTGAAGATAAC+TGG | 0.363695 | 1.3:-56173210 | MS.gene005005:CDS |
| TACCCAAGAAGCAAATGTTT+TGG | 0.374219 | 1.3:+56173768 | None:intergenic |
| TATTACAACCAACTAATAAA+GGG | 0.382437 | 1.3:+56172646 | None:intergenic |
| TCCACTGGCCTTAGTGCCTT+AGG | 0.384644 | 1.3:-56174800 | MS.gene005005:CDS |
| TGGAATAGCTGGAACCATTT+CGG | 0.385561 | 1.3:-56174975 | MS.gene005005:CDS |
| CCAACTATTTCCCACACTCT+TGG | 0.389585 | 1.3:+56173240 | None:intergenic |
| TAATAGATGAAAACGACAAA+TGG | 0.390777 | 1.3:-56172986 | MS.gene005005:CDS |
| GCAGATAAACTTGGAGTTCA+AGG | 0.397730 | 1.3:-56172476 | MS.gene005005:intron |
| TACGACAATTGTGAAAATAA+TGG | 0.398182 | 1.3:-56173621 | MS.gene005005:CDS |
| TGACGGAAACGTTGAAGCCT+TGG | 0.408876 | 1.3:+56174020 | None:intergenic |
| CATTGATATCACAACCGAAA+TGG | 0.414111 | 1.3:+56174961 | None:intergenic |
| AAACAGGCCCCTTTATTAGT+TGG | 0.414998 | 1.3:-56172654 | MS.gene005005:intron |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 1.3:-56174939 | MS.gene005005:intron |
| AACGTTTCCGTCAGGAATCA+AGG | 0.429945 | 1.3:-56174010 | MS.gene005005:CDS |
| TTGGGGATTTATTCAGATGC+TGG | 0.430380 | 1.3:-56173952 | MS.gene005005:CDS |
| ATATGCTCGAAGTTGGAAAC+GGG | 0.439121 | 1.3:-56172812 | MS.gene005005:CDS |
| ACTTGTAGCAAACGCATGCC+TGG | 0.459686 | 1.3:-56173817 | MS.gene005005:CDS |
| TTGTTTCATGCACCTTAGCT+AGG | 0.460088 | 1.3:+56172745 | None:intergenic |
| GGAAATAGTTGGAGAACAAC+AGG | 0.462081 | 1.3:-56173229 | MS.gene005005:CDS |
| ATTTCATGTCCTAGTGATCC+AGG | 0.469966 | 1.3:+56173799 | None:intergenic |
| AATATCTACTATAGAAAAGA+AGG | 0.471027 | 1.3:-56175215 | MS.gene005005:CDS |
| AATAGATGAAAACGACAAAT+GGG | 0.477810 | 1.3:-56172985 | MS.gene005005:CDS |
| TGTGGTATTGCAGATAAACT+TGG | 0.480571 | 1.3:-56172485 | MS.gene005005:intron |
| CAGCATTTGGGCCCTAGCTA+AGG | 0.480775 | 1.3:-56172757 | MS.gene005005:intron |
| TGATGTTCAGATGGAATAGC+TGG | 0.481736 | 1.3:-56174986 | MS.gene005005:intron |
| TAGGGCCCAAATGCTGAAAT+GGG | 0.482343 | 1.3:+56172764 | None:intergenic |
| ATGGGAAGATCCGGCAACAT+GGG | 0.483081 | 1.3:-56173263 | MS.gene005005:CDS |
| CCACTGGCCTTAGTGCCTTA+GGG | 0.484690 | 1.3:-56174799 | MS.gene005005:CDS |
| ACATGAAAGGCTTGAAGTTG+GGG | 0.485593 | 1.3:-56173969 | MS.gene005005:CDS |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 1.3:-56173440 | MS.gene005005:intron |
| CTTGGTCAGACACCTCCAAT+GGG | 0.496185 | 1.3:-56175166 | MS.gene005005:CDS |
| GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 1.3:-56172819 | MS.gene005005:CDS |
| GACGGAAACGTTGAAGCCTT+GGG | 0.501363 | 1.3:+56174021 | None:intergenic |
| GATATGCTCGAAGTTGGAAA+CGG | 0.501986 | 1.3:-56172813 | MS.gene005005:CDS |
| GATGGGAAGATCCGGCAACA+TGG | 0.502993 | 1.3:-56173264 | MS.gene005005:CDS |
| ACATAGGGGATGGGAAGATC+CGG | 0.505331 | 1.3:-56173272 | MS.gene005005:intron |
| GGCAACATGGGCCAAGAGTG+TGG | 0.508020 | 1.3:-56173251 | MS.gene005005:CDS |
| TCACATGAAAGGCTTGAAGT+TGG | 0.509212 | 1.3:-56173971 | MS.gene005005:CDS |
| AAGGCTTCAACGTTTCCGTC+AGG | 0.511489 | 1.3:-56174018 | MS.gene005005:CDS |
| TGGGGATTTATTCAGATGCT+GGG | 0.511774 | 1.3:-56173951 | MS.gene005005:intron |
| CCAAGAGTGTGGGAAATAGT+TGG | 0.513390 | 1.3:-56173240 | MS.gene005005:CDS |
| GCTCATTATGTTCACATGAA+AGG | 0.515024 | 1.3:-56173982 | MS.gene005005:CDS |
| GACAAATGGGCATCTTACGC+TGG | 0.520931 | 1.3:-56172972 | MS.gene005005:CDS |
| CTTTCTAAAACATAGGGGAT+GGG | 0.522563 | 1.3:-56173281 | MS.gene005005:intron |
| TGGGCATCTTACGCTGGACC+TGG | 0.522611 | 1.3:-56172966 | MS.gene005005:CDS |
| ATGGTATAAGCGTTAGAGAA+AGG | 0.522615 | 1.3:-56173602 | MS.gene005005:intron |
| GTTTCTTATCAATTCATATG+TGG | 0.524331 | 1.3:+56172605 | None:intergenic |
| TCACACATAGAGAAGAAGAT+TGG | 0.524798 | 1.3:+56173444 | None:intergenic |
| AGTGAAGCCTTATTAAACTC+TGG | 0.525310 | 1.3:-56173471 | MS.gene005005:CDS |
| TATTTGTTACAAAATGGACT+TGG | 0.526903 | 1.3:-56175184 | MS.gene005005:CDS |
| AATAAACGAGCAGCTGAAGA+TGG | 0.531597 | 1.3:+56175259 | None:intergenic |
| AATAAGGCTTCACTCATTGG+TGG | 0.532353 | 1.3:+56173480 | None:intergenic |
| TATTATTTCAGCTGATGCAA+TGG | 0.533408 | 1.3:-56174825 | MS.gene005005:intron |
| AAACGCATGCCTGGATCACT+AGG | 0.537451 | 1.3:-56173808 | MS.gene005005:CDS |
| GCTGATGCAATGGTGTCCAC+TGG | 0.538273 | 1.3:-56174815 | MS.gene005005:CDS |
| CTTACGCTGGACCTGGAGGA+TGG | 0.542528 | 1.3:-56172959 | MS.gene005005:CDS |
| TGTTTCATGCACCTTAGCTA+GGG | 0.542541 | 1.3:+56172746 | None:intergenic |
| ATGTGTACCCTAAGGCACTA+AGG | 0.543540 | 1.3:+56174792 | None:intergenic |
| TAGAGCAATGGCTAGGGTGA+TGG | 0.546437 | 1.3:-56175329 | None:intergenic |
| AAATAATTAGAGCAATGGCT+AGG | 0.547864 | 1.3:-56175336 | None:intergenic |
| ATAAGGCTTCACTCATTGGT+GGG | 0.549666 | 1.3:+56173481 | None:intergenic |
| AGAACTTAATCGAGACTCCC+AGG | 0.552285 | 1.3:-56174229 | MS.gene005005:intron |
| AATAATTAGAGCAATGGCTA+GGG | 0.553593 | 1.3:-56175335 | None:intergenic |
| TAATTACCATTCCATCCTCC+AGG | 0.554545 | 1.3:+56172948 | None:intergenic |
| TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 1.3:-56172634 | MS.gene005005:CDS |
| ACTTGGTCAGACACCTCCAA+TGG | 0.560343 | 1.3:-56175167 | MS.gene005005:CDS |
| GAACATATATACCTGTATCT+CGG | 0.563077 | 1.3:+56174928 | None:intergenic |
| TTAGGGAAATATGGTTCCCA+AGG | 0.580295 | 1.3:-56174037 | MS.gene005005:intron |
| ATATTGAAGATAACTGGAAG+AGG | 0.580538 | 1.3:-56173204 | MS.gene005005:intron |
| GCTGGACCTGGAGGATGGAA+TGG | 0.582660 | 1.3:-56172954 | MS.gene005005:intron |
| ATTAATATATGTGTACCCTA+AGG | 0.594752 | 1.3:+56174784 | None:intergenic |
| GCAACATGGGCCAAGAGTGT+GGG | 0.599392 | 1.3:-56173250 | MS.gene005005:CDS |
| GAGGGTATAACATACCCCAT+TGG | 0.607350 | 1.3:+56175151 | None:intergenic |
| ATTACAACCAACTAATAAAG+GGG | 0.610550 | 1.3:+56172647 | None:intergenic |
| GGTATAACATACCCCATTGG+AGG | 0.622864 | 1.3:+56175154 | None:intergenic |
| AAACGAGCAGCTGAAGATGG+TGG | 0.628259 | 1.3:+56175262 | None:intergenic |
| GCTAGAGCCTTGATTCCTGA+CGG | 0.639680 | 1.3:+56174003 | None:intergenic |
| GCATCTTACGCTGGACCTGG+AGG | 0.657439 | 1.3:-56172963 | MS.gene005005:CDS |
| ATGCTCGAAGTTGGAAACGG+GGG | 0.660475 | 1.3:-56172810 | MS.gene005005:CDS |
| CCCTAAGGCACTAAGGCCAG+TGG | 0.665938 | 1.3:+56174799 | None:intergenic |
| TTGCAATATTCACTAGCACA+AGG | 0.695421 | 1.3:+56175290 | None:intergenic |
| TATGCTCGAAGTTGGAAACG+GGG | 0.712195 | 1.3:-56172811 | MS.gene005005:CDS |
| ATGGGAACGATATTCCTCTG+TGG | 0.732691 | 1.3:+56172782 | None:intergenic |
| TTGGTCAGACACCTCCAATG+GGG | 0.742998 | 1.3:-56175165 | MS.gene005005:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAATTTAGTTAATC+TGG | - | chr1.3:56172925-56172944 | MS.gene005005:intron | 10.0% |
| !!! | ACAATTTAATATGTTTTTTT+AGG | + | chr1.3:56173881-56173900 | None:intergenic | 10.0% |
| !!! | ACTAATTTATATTTTTCTTT+AGG | - | chr1.3:56174126-56174145 | MS.gene005005:intron | 10.0% |
| !!! | CAATTTAATATGTTTTTTTA+GGG | + | chr1.3:56173880-56173899 | None:intergenic | 10.0% |
| !!! | CATTATACATAATATAATTT+TGG | + | chr1.3:56174089-56174108 | None:intergenic | 10.0% |
| !!! | CTAATTTATATTTTTCTTTA+GGG | - | chr1.3:56174127-56174146 | MS.gene005005:intron | 10.0% |
| !!! | TCTATATTTTTTTTGTAAAT+TGG | + | chr1.3:56173324-56173343 | None:intergenic | 10.0% |
| !!! | TTTCATAAATTTTGTAAATT+AGG | - | chr1.3:56174281-56174300 | MS.gene005005:intron | 10.0% |
| !!! | TTTTAGAAAGAAATTTAAAA+GGG | + | chr1.3:56174496-56174515 | None:intergenic | 10.0% |
| !! | AGAAAAATATAAATTAGTGT+TGG | + | chr1.3:56174124-56174143 | None:intergenic | 15.0% |
| !!! | AAATTTCTTTCTAAAACATA+GGG | - | chr1.3:56174500-56174519 | MS.gene005005:intron | 15.0% |
| !!! | ATGTATTGATTTTTCAATAA+AGG | - | chr1.3:56175255-56175274 | MS.gene005005:CDS | 15.0% |
| !!! | GTTTTAGAAAGAAATTTAAA+AGG | + | chr1.3:56174497-56174516 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTCTAAAACAT+AGG | - | chr1.3:56174499-56174518 | MS.gene005005:intron | 15.0% |
| !!! | TATACATAATATAATTTTGG+TGG | + | chr1.3:56174086-56174105 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTGACTTTTTTT+GGG | + | chr1.3:56173179-56173198 | None:intergenic | 15.0% |
| !!! | TTTGTTAATTTGACTTTTTT+TGG | + | chr1.3:56173180-56173199 | None:intergenic | 15.0% |
| !!! | TTTTGTTTAACTATTGTATT+GGG | - | chr1.3:56175107-56175126 | MS.gene005005:intron | 15.0% |
| !!! | TTTTTGTTTAACTATTGTAT+TGG | - | chr1.3:56175106-56175125 | MS.gene005005:intron | 15.0% |
| !! | AATATCTACTATAGAAAAGA+AGG | - | chr1.3:56172572-56172591 | MS.gene005005:intron | 20.0% |
| !! | ATATTACAACCAACTAATAA+AGG | + | chr1.3:56175145-56175164 | None:intergenic | 20.0% |
| !! | TATTAAATTGTGTCAACAAT+AGG | + | chr1.3:56175076-56175095 | None:intergenic | 20.0% |
| !! | TATTACAACCAACTAATAAA+GGG | + | chr1.3:56175144-56175163 | None:intergenic | 20.0% |
| !! | TTCTAATTAAGTGCATAATT+TGG | - | chr1.3:56172762-56172781 | MS.gene005005:CDS | 20.0% |
| !!! | AAGAGTTATTTGTTACAAAA+TGG | - | chr1.3:56172597-56172616 | MS.gene005005:CDS | 20.0% |
| !!! | AATTTCTTTCTAAAACATAG+GGG | - | chr1.3:56174501-56174520 | MS.gene005005:intron | 20.0% |
| !!! | AGATATTTTGGTTTTATTGT+TGG | + | chr1.3:56172559-56172578 | None:intergenic | 20.0% |
| !!! | CTAACAAATTTAAGATGTTA+GGG | - | chr1.3:56173733-56173752 | MS.gene005005:intron | 20.0% |
| !!! | CTTTTCTATAGTAGATATTT+TGG | + | chr1.3:56172571-56172590 | None:intergenic | 20.0% |
| !!! | TAACATCTTAAATTTGTTAG+AGG | + | chr1.3:56173733-56173752 | None:intergenic | 20.0% |
| !!! | TCTAACAAATTTAAGATGTT+AGG | - | chr1.3:56173732-56173751 | MS.gene005005:intron | 20.0% |
| ! | AATAGATGAAAACGACAAAT+GGG | - | chr1.3:56174802-56174821 | MS.gene005005:CDS | 25.0% |
| ! | ATATACTTAAATACGTTTCG+TGG | + | chr1.3:56173285-56173304 | None:intergenic | 25.0% |
| ! | ATTAATATATGTGTACCCTA+AGG | + | chr1.3:56173006-56173025 | None:intergenic | 25.0% |
| ! | ATTACAACCAACTAATAAAG+GGG | + | chr1.3:56175143-56175162 | None:intergenic | 25.0% |
| ! | GATTTCTGCATAAAAATTGT+AGG | + | chr1.3:56173948-56173967 | None:intergenic | 25.0% |
| ! | GGGTACACATATATTAATTT+AGG | - | chr1.3:56173008-56173027 | MS.gene005005:intron | 25.0% |
| ! | GTTTCTTATCAATTCATATG+TGG | + | chr1.3:56175185-56175204 | None:intergenic | 25.0% |
| ! | TAATAGATGAAAACGACAAA+TGG | - | chr1.3:56174801-56174820 | MS.gene005005:CDS | 25.0% |
| ! | TACGACAATTGTGAAAATAA+TGG | - | chr1.3:56174166-56174185 | MS.gene005005:intron | 25.0% |
| !! | AATCAACTGTCTTTCAATTT+TGG | - | chr1.3:56173588-56173607 | MS.gene005005:intron | 25.0% |
| !! | AGTAAGTATTGTAGTATCAT+TGG | + | chr1.3:56173053-56173072 | None:intergenic | 25.0% |
| !! | TATTTGTTACAAAATGGACT+TGG | - | chr1.3:56172603-56172622 | MS.gene005005:CDS | 25.0% |
| !! | TTTAAGATGTTAGGGAAATA+TGG | - | chr1.3:56173741-56173760 | MS.gene005005:intron | 25.0% |
| !!! | ACAGTTGATTTTAAATACCT+GGG | + | chr1.3:56173578-56173597 | None:intergenic | 25.0% |
| !!! | AGAGAAAGGTATTTAATCAA+TGG | - | chr1.3:56174199-56174218 | MS.gene005005:intron | 25.0% |
| ATATTGAAGATAACTGGAAG+AGG | - | chr1.3:56174583-56174602 | MS.gene005005:intron | 30.0% | |
| ATCTATTATAGAAGTCATGC+TGG | + | chr1.3:56174789-56174808 | None:intergenic | 30.0% | |
| CTATTGTATTGGGTTTAAAC+AGG | - | chr1.3:56175117-56175136 | MS.gene005005:intron | 30.0% | |
| GAACATATATACCTGTATCT+CGG | + | chr1.3:56172862-56172881 | None:intergenic | 30.0% | |
| GAAGTTATTGCAGTAAATCA+AGG | - | chr1.3:56175208-56175227 | MS.gene005005:CDS | 30.0% | |
| TATTATTTCAGCTGATGCAA+TGG | - | chr1.3:56172962-56172981 | MS.gene005005:CDS | 30.0% | |
| TCTATTATAGAAGTCATGCT+GGG | + | chr1.3:56174788-56174807 | None:intergenic | 30.0% | |
| TCTCTATCTTCATTATGATG+TGG | - | chr1.3:56172880-56172899 | MS.gene005005:intron | 30.0% | |
| TGGTTGTAATATTCAAGCAA+TGG | - | chr1.3:56175153-56175172 | MS.gene005005:intron | 30.0% | |
| TGTGAATGTGTACATAAAGA+GGG | + | chr1.3:56172657-56172676 | None:intergenic | 30.0% | |
| TTACATCAAACTCCAATACT+AGG | - | chr1.3:56174911-56174930 | MS.gene005005:intron | 30.0% | |
| TTGTACATATGATGTTCAGA+TGG | - | chr1.3:56172792-56172811 | MS.gene005005:CDS | 30.0% | |
| TTTAATAAGGCTTCACTCAT+TGG | + | chr1.3:56174313-56174332 | None:intergenic | 30.0% | |
| ! | TTATGATGTGGTTCAAGTTA+TGG | - | chr1.3:56172892-56172911 | MS.gene005005:intron | 30.0% |
| !! | ATGGTTTTTCAGATGATTGT+TGG | - | chr1.3:56173533-56173552 | MS.gene005005:intron | 30.0% |
| !! | GACAGTTGATTTTAAATACC+TGG | + | chr1.3:56173579-56173598 | None:intergenic | 30.0% |
| !! | TGGTTTTTCAGATGATTGTT+GGG | - | chr1.3:56173534-56173553 | MS.gene005005:intron | 30.0% |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr1.3:56174016-56174035 | MS.gene005005:CDS | 35.0% | |
| ATGGTATAAGCGTTAGAGAA+AGG | - | chr1.3:56174185-56174204 | MS.gene005005:intron | 35.0% | |
| CACATATGAAGACCTAGTAT+TGG | + | chr1.3:56174926-56174945 | None:intergenic | 35.0% | |
| CAGGAGATATTGAAGATAAC+TGG | - | chr1.3:56174577-56174596 | MS.gene005005:intron | 35.0% | |
| CATTGATATCACAACCGAAA+TGG | + | chr1.3:56172829-56172848 | None:intergenic | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr1.3:56172848-56172867 | MS.gene005005:intron | 35.0% | |
| GCTCATTATGTTCACATGAA+AGG | - | chr1.3:56173805-56173824 | MS.gene005005:CDS | 35.0% | |
| GTCTCATTGCAAGTTATTGT+GGG | + | chr1.3:56174626-56174645 | None:intergenic | 35.0% | |
| GTGTGAATGTGTACATAAAG+AGG | + | chr1.3:56172658-56172677 | None:intergenic | 35.0% | |
| TCACACATAGAGAAGAAGAT+TGG | + | chr1.3:56174346-56174365 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr1.3:56174347-56174366 | MS.gene005005:intron | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr1.3:56174017-56174036 | MS.gene005005:CDS | 35.0% | |
| TGGTCTTCCAGAGTTTAATA+AGG | + | chr1.3:56174326-56174345 | None:intergenic | 35.0% | |
| TGTCTCATTGCAAGTTATTG+TGG | + | chr1.3:56174627-56174646 | None:intergenic | 35.0% | |
| TGTGGTATTGCAGATAAACT+TGG | - | chr1.3:56175302-56175321 | MS.gene005005:CDS | 35.0% | |
| TTGCAATATTCACTAGCACA+AGG | + | chr1.3:56172500-56172519 | None:intergenic | 35.0% | |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr1.3:56174022-56174041 | None:intergenic | 35.0% |
| !! | AGTGAAGCCTTATTAAACTC+TGG | - | chr1.3:56174316-56174335 | MS.gene005005:intron | 35.0% |
| !! | CTTTCTAAAACATAGGGGAT+GGG | - | chr1.3:56174506-56174525 | MS.gene005005:intron | 35.0% |
| !! | TCTTTCTAAAACATAGGGGA+TGG | - | chr1.3:56174505-56174524 | MS.gene005005:intron | 35.0% |
| AAACAGGCCCCTTTATTAGT+TGG | - | chr1.3:56175133-56175152 | MS.gene005005:intron | 40.0% | |
| AATAAACGAGCAGCTGAAGA+TGG | + | chr1.3:56172531-56172550 | None:intergenic | 40.0% | |
| AATAAGGCTTCACTCATTGG+TGG | + | chr1.3:56174310-56174329 | None:intergenic | 40.0% | |
| ACATGAAAGGCTTGAAGTTG+GGG | - | chr1.3:56173818-56173837 | MS.gene005005:CDS | 40.0% | |
| ATAAGGCTTCACTCATTGGT+GGG | + | chr1.3:56174309-56174328 | None:intergenic | 40.0% | |
| ATATGCTCGAAGTTGGAAAC+GGG | - | chr1.3:56174975-56174994 | MS.gene005005:CDS | 40.0% | |
| ATCGTTCCCATTTCAGCATT+TGG | - | chr1.3:56175017-56175036 | MS.gene005005:intron | 40.0% | |
| ATTTCATGTCCTAGTGATCC+AGG | + | chr1.3:56173991-56174010 | None:intergenic | 40.0% | |
| CACATGAAAGGCTTGAAGTT+GGG | - | chr1.3:56173817-56173836 | MS.gene005005:CDS | 40.0% | |
| GATATGCTCGAAGTTGGAAA+CGG | - | chr1.3:56174974-56174993 | MS.gene005005:CDS | 40.0% | |
| GCAGATAAACTTGGAGTTCA+AGG | - | chr1.3:56175311-56175330 | MS.gene005005:CDS | 40.0% | |
| GGAAATAGTTGGAGAACAAC+AGG | - | chr1.3:56174558-56174577 | MS.gene005005:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr1.3:56174842-56174861 | None:intergenic | 40.0% | |
| TATAGAAGTCATGCTGGGAA+TGG | + | chr1.3:56174783-56174802 | None:intergenic | 40.0% | |
| TCACATGAAAGGCTTGAAGT+TGG | - | chr1.3:56173816-56173835 | MS.gene005005:CDS | 40.0% | |
| TCGTTCCCATTTCAGCATTT+GGG | - | chr1.3:56175018-56175037 | MS.gene005005:intron | 40.0% | |
| TCTTCAGCTGCTCGTTTATT+AGG | - | chr1.3:56172531-56172550 | MS.gene005005:intron | 40.0% | |
| TGAAACTCATGTGCTTCTTG+TGG | - | chr1.3:56175284-56175303 | MS.gene005005:CDS | 40.0% | |
| TGATGTTCAGATGGAATAGC+TGG | - | chr1.3:56172801-56172820 | MS.gene005005:CDS | 40.0% | |
| TGGAATAGCTGGAACCATTT+CGG | - | chr1.3:56172812-56172831 | MS.gene005005:CDS | 40.0% | |
| TGGGGATTTATTCAGATGCT+GGG | - | chr1.3:56173836-56173855 | MS.gene005005:intron | 40.0% | |
| TGTTTCATGCACCTTAGCTA+GGG | + | chr1.3:56175044-56175063 | None:intergenic | 40.0% | |
| TTAGGGAAATATGGTTCCCA+AGG | - | chr1.3:56173750-56173769 | MS.gene005005:intron | 40.0% | |
| TTGGGGATTTATTCAGATGC+TGG | - | chr1.3:56173835-56173854 | MS.gene005005:intron | 40.0% | |
| TTGTTTCATGCACCTTAGCT+AGG | + | chr1.3:56175045-56175064 | None:intergenic | 40.0% | |
| TTTCCAACTTCGAGCATATC+AGG | + | chr1.3:56174974-56174993 | None:intergenic | 40.0% | |
| ! | GTGTGAATGGTGAGTTGAAT+TGG | - | chr1.3:56174360-56174379 | MS.gene005005:intron | 40.0% |
| AACGTTTCCGTCAGGAATCA+AGG | - | chr1.3:56173777-56173796 | MS.gene005005:CDS | 45.0% | |
| AGAACTTAATCGAGACTCCC+AGG | - | chr1.3:56173558-56173577 | MS.gene005005:intron | 45.0% | |
| ATGGGAACGATATTCCTCTG+TGG | + | chr1.3:56175008-56175027 | None:intergenic | 45.0% | |
| CCAACTATTTCCCACACTCT+TGG | + | chr1.3:56174550-56174569 | None:intergenic | 45.0% | |
| GATCCTGATATGCTCGAAGT+TGG | - | chr1.3:56174968-56174987 | MS.gene005005:CDS | 45.0% | |
| GGTATAACATACCCCATTGG+AGG | + | chr1.3:56172636-56172655 | None:intergenic | 45.0% | |
| TAGGGCCCAAATGCTGAAAT+GGG | + | chr1.3:56175026-56175045 | None:intergenic | 45.0% | |
| TATGCTCGAAGTTGGAAACG+GGG | - | chr1.3:56174976-56174995 | MS.gene005005:CDS | 45.0% | |
| ! | ATGTGTACCCTAAGGCACTA+AGG | + | chr1.3:56172998-56173017 | None:intergenic | 45.0% |
| ! | CCAAGAGTGTGGGAAATAGT+TGG | - | chr1.3:56174547-56174566 | MS.gene005005:intron | 45.0% |
| ! | GAGGGTATAACATACCCCAT+TGG | + | chr1.3:56172639-56172658 | None:intergenic | 45.0% |
| !! | TTTAATAATATAAATTTGTA+TGG | - | chr1.3:56173514-56173533 | MS.gene005005:intron | 5.0% |
| AAACGAGCAGCTGAAGATGG+TGG | + | chr1.3:56172528-56172547 | None:intergenic | 50.0% | |
| AAACGCATGCCTGGATCACT+AGG | - | chr1.3:56173979-56173998 | MS.gene005005:CDS | 50.0% | |
| AAGGCTTCAACGTTTCCGTC+AGG | - | chr1.3:56173769-56173788 | MS.gene005005:intron | 50.0% | |
| ACATAGGGGATGGGAAGATC+CGG | - | chr1.3:56174515-56174534 | MS.gene005005:intron | 50.0% | |
| ACTTGGTCAGACACCTCCAA+TGG | - | chr1.3:56172620-56172639 | MS.gene005005:CDS | 50.0% | |
| ACTTGTAGCAAACGCATGCC+TGG | - | chr1.3:56173970-56173989 | MS.gene005005:CDS | 50.0% | |
| ATGCTCGAAGTTGGAAACGG+GGG | - | chr1.3:56174977-56174996 | MS.gene005005:CDS | 50.0% | |
| ATGGGAAGATCCGGCAACAT+GGG | - | chr1.3:56174524-56174543 | MS.gene005005:intron | 50.0% | |
| CTAGGGCCCAAATGCTGAAA+TGG | + | chr1.3:56175027-56175046 | None:intergenic | 50.0% | |
| CTTGGTCAGACACCTCCAAT+GGG | - | chr1.3:56172621-56172640 | MS.gene005005:CDS | 50.0% | |
| GACAAATGGGCATCTTACGC+TGG | - | chr1.3:56174815-56174834 | MS.gene005005:CDS | 50.0% | |
| GACGGAAACGTTGAAGCCTT+GGG | + | chr1.3:56173769-56173788 | None:intergenic | 50.0% | |
| GCTAGAGCCTTGATTCCTGA+CGG | + | chr1.3:56173787-56173806 | None:intergenic | 50.0% | |
| TGACGGAAACGTTGAAGCCT+TGG | + | chr1.3:56173770-56173789 | None:intergenic | 50.0% | |
| TTGGTCAGACACCTCCAATG+GGG | - | chr1.3:56172622-56172641 | MS.gene005005:CDS | 50.0% | |
| ACACTCTTGGCCCATGTTGC+CGG | + | chr1.3:56174537-56174556 | None:intergenic | 55.0% | |
| CAGCATTTGGGCCCTAGCTA+AGG | - | chr1.3:56175030-56175049 | MS.gene005005:intron | 55.0% | |
| GATGGGAAGATCCGGCAACA+TGG | - | chr1.3:56174523-56174542 | MS.gene005005:intron | 55.0% | |
| GCTGATGCAATGGTGTCCAC+TGG | - | chr1.3:56172972-56172991 | MS.gene005005:CDS | 55.0% | |
| ! | GCAACATGGGCCAAGAGTGT+GGG | - | chr1.3:56174537-56174556 | MS.gene005005:intron | 55.0% |
| !! | CCACTGGCCTTAGTGCCTTA+GGG | - | chr1.3:56172988-56173007 | MS.gene005005:CDS | 55.0% |
| !! | TCCACTGGCCTTAGTGCCTT+AGG | - | chr1.3:56172987-56173006 | MS.gene005005:CDS | 55.0% |
| CTTACGCTGGACCTGGAGGA+TGG | - | chr1.3:56174828-56174847 | MS.gene005005:intron | 60.0% | |
| GCATCTTACGCTGGACCTGG+AGG | - | chr1.3:56174824-56174843 | MS.gene005005:intron | 60.0% | |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr1.3:56174833-56174852 | MS.gene005005:intron | 60.0% | |
| GGCAACATGGGCCAAGAGTG+TGG | - | chr1.3:56174536-56174555 | MS.gene005005:intron | 60.0% | |
| TGGGCATCTTACGCTGGACC+TGG | - | chr1.3:56174821-56174840 | MS.gene005005:intron | 60.0% | |
| ! | AAACGGGGGCATGACCACAG+AGG | - | chr1.3:56174991-56175010 | MS.gene005005:intron | 60.0% |
| ! | CCCTAAGGCACTAAGGCCAG+TGG | + | chr1.3:56172991-56173010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 56172465 | 56175344 | 56172465 | ID=MS.gene005005 |
| chr1.3 | mRNA | 56172465 | 56175344 | 56172465 | ID=MS.gene005005.t1;Parent=MS.gene005005 |
| chr1.3 | exon | 56175166 | 56175344 | 56175166 | ID=MS.gene005005.t1.exon1;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56175166 | 56175344 | 56175166 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56174940 | 56174998 | 56174940 | ID=MS.gene005005.t1.exon2;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56174940 | 56174998 | 56174940 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56174780 | 56174836 | 56174780 | ID=MS.gene005005.t1.exon3;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56174780 | 56174836 | 56174780 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56174230 | 56174264 | 56174230 | ID=MS.gene005005.t1.exon4;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56174230 | 56174264 | 56174230 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56173952 | 56174055 | 56173952 | ID=MS.gene005005.t1.exon5;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56173952 | 56174055 | 56173952 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56173771 | 56173846 | 56173771 | ID=MS.gene005005.t1.exon6;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56173771 | 56173846 | 56173771 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56173603 | 56173661 | 56173603 | ID=MS.gene005005.t1.exon7;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56173603 | 56173661 | 56173603 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56173441 | 56173506 | 56173441 | ID=MS.gene005005.t1.exon8;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56173441 | 56173506 | 56173441 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56173205 | 56173288 | 56173205 | ID=MS.gene005005.t1.exon9;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56173205 | 56173288 | 56173205 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56172955 | 56173019 | 56172955 | ID=MS.gene005005.t1.exon10;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56172955 | 56173019 | 56172955 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56172758 | 56172840 | 56172758 | ID=MS.gene005005.t1.exon11;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56172758 | 56172840 | 56172758 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56172590 | 56172670 | 56172590 | ID=MS.gene005005.t1.exon12;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56172590 | 56172670 | 56172590 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| chr1.3 | exon | 56172465 | 56172494 | 56172465 | ID=MS.gene005005.t1.exon13;Parent=MS.gene005005.t1 |
| chr1.3 | CDS | 56172465 | 56172494 | 56172465 | ID=cds.MS.gene005005.t1;Parent=MS.gene005005.t1 |
| Gene Sequence |
| Protein sequence |
