Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87684.t1 | RHN46708.1 | 96.8 | 410 | 10 | 2 | 1 | 409 | 1 | 408 | 1.30E-236 | 828.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87684.t1 | Q9FT97 | 75.2 | 408 | 101 | 0 | 2 | 409 | 3 | 410 | 1.3e-189 | 663.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87684.t1 | A0A396H1S7 | 96.8 | 410 | 10 | 2 | 1 | 409 | 1 | 408 | 9.4e-237 | 828.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene87684 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene87684 | 0.820332 | 7.25E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene87684 | 0.808462 | 3.06E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene87684 | 0.842853 | 2.01E-58 | -1.69E-46 |
| MS.gene049378 | MS.gene87684 | 0.824589 | 7.44E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene87684 | 0.803126 | 4.04E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene87684 | 0.853533 | 2.24E-61 | -1.69E-46 |
| MS.gene050227 | MS.gene87684 | 0.833983 | 3.90E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene87684 | 0.837559 | 4.84E-57 | -1.69E-46 |
| MS.gene050330 | MS.gene87684 | -0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene050438 | MS.gene87684 | 0.808105 | 3.65E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene87684 | 0.836035 | 1.18E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene87684 | 0.830993 | 2.15E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene87684 | -0.828324 | 9.58E-55 | -1.69E-46 |
| MS.gene050680 | MS.gene87684 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene87684 | 0.819184 | 1.33E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene87684 | 0.817723 | 2.84E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene87684 | 0.81887 | 1.56E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene87684 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene87684 | 0.823068 | 1.69E-53 | -1.69E-46 |
| MS.gene050987 | MS.gene87684 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene87684 | 0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene87684 | 0.825396 | 4.80E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene87684 | 0.82656 | 2.54E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene87684 | 0.820658 | 6.10E-53 | -1.69E-46 |
| MS.gene052426 | MS.gene87684 | 0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene87684 | 0.800274 | 1.56E-48 | -1.69E-46 |
| MS.gene053216 | MS.gene87684 | 0.817031 | 4.07E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene87684 | 0.840288 | 9.52E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene87684 | 0.833051 | 6.66E-56 | -1.69E-46 |
| MS.gene054379 | MS.gene87684 | 0.826983 | 2.01E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene87684 | 0.860714 | 1.70E-63 | -1.69E-46 |
| MS.gene05510 | MS.gene87684 | 0.803838 | 2.88E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene87684 | 0.815538 | 8.78E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene87684 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene87684 | 0.811205 | 7.87E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene87684 | 0.807965 | 3.91E-50 | -1.69E-46 |
| MS.gene056873 | MS.gene87684 | 0.806554 | 7.78E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene87684 | 0.844785 | 6.10E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene87684 | 0.807368 | 5.23E-50 | -1.69E-46 |
| MS.gene057200 | MS.gene87684 | 0.813352 | 2.67E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene87684 | 0.830475 | 2.88E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene87684 | 0.81741 | 3.35E-52 | -1.69E-46 |
| MS.gene057750 | MS.gene87684 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene057754 | MS.gene87684 | 0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene87684 | 0.825745 | 3.96E-54 | -1.69E-46 |
| MS.gene058146 | MS.gene87684 | 0.829157 | 6.02E-55 | -1.69E-46 |
| MS.gene058399 | MS.gene87684 | 0.807478 | 4.96E-50 | -1.69E-46 |
| MS.gene058749 | MS.gene87684 | 0.826317 | 2.90E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene87684 | 0.846844 | 1.68E-59 | -1.69E-46 |
| MS.gene059899 | MS.gene87684 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene87684 | 0.828169 | 1.04E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene87684 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene060480 | MS.gene87684 | 0.815399 | 9.43E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene87684 | 0.827437 | 1.57E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene87684 | 0.825328 | 4.98E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene87684 | 0.817138 | 3.85E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene87684 | 0.819011 | 1.45E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene87684 | 0.823708 | 1.20E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87684 | MS.gene013419 | PPI |
| MS.gene87684 | MS.gene05535 | PPI |
| MS.gene87684 | MS.gene61402 | PPI |
| MS.gene87684 | MS.gene004947 | PPI |
| MS.gene87684 | MS.gene052452 | PPI |
| MS.gene87684 | MS.gene61401 | PPI |
| MS.gene87684 | MS.gene042963 | PPI |
| MS.gene87684 | MS.gene052453 | PPI |
| MS.gene87684 | MS.gene069814 | PPI |
| MS.gene059347 | MS.gene87684 | PPI |
| MS.gene87684 | MS.gene83318 | PPI |
| MS.gene87684 | MS.gene005005 | PPI |
| MS.gene87684 | MS.gene062192 | PPI |
| MS.gene07479 | MS.gene87684 | PPI |
| MS.gene87684 | MS.gene049391 | PPI |
| MS.gene87684 | MS.gene86814 | PPI |
| MS.gene87684 | MS.gene042962 | PPI |
| MS.gene87684 | MS.gene05536 | PPI |
| MS.gene87684 | MS.gene06516 | PPI |
| MS.gene87684 | MS.gene07480 | PPI |
| MS.gene87684 | MS.gene062191 | PPI |
| MS.gene004948 | MS.gene87684 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87684.t1 | MTR_7g073650 | 96.585 | 410 | 11 | 2 | 1 | 409 | 1 | 408 | 0.0 | 815 |
| MS.gene87684.t1 | MTR_7g073640 | 91.198 | 409 | 33 | 3 | 2 | 409 | 3 | 409 | 0.0 | 768 |
| MS.gene87684.t1 | MTR_6g069140 | 65.946 | 370 | 125 | 1 | 38 | 407 | 51 | 419 | 0.0 | 526 |
| MS.gene87684.t1 | MTR_1g077520 | 61.084 | 406 | 155 | 2 | 5 | 409 | 6 | 409 | 0.0 | 523 |
| MS.gene87684.t1 | MTR_1g077480 | 60.988 | 405 | 151 | 3 | 9 | 407 | 8 | 411 | 0.0 | 522 |
| MS.gene87684.t1 | MTR_6g086625 | 61.139 | 404 | 149 | 3 | 9 | 407 | 5 | 405 | 0.0 | 521 |
| MS.gene87684.t1 | MTR_6g086575 | 61.000 | 400 | 153 | 3 | 9 | 407 | 7 | 404 | 0.0 | 520 |
| MS.gene87684.t1 | MTR_3g094160 | 60.106 | 376 | 146 | 2 | 35 | 407 | 51 | 425 | 4.12e-166 | 473 |
| MS.gene87684.t1 | MTR_1g077520 | 64.615 | 325 | 115 | 0 | 9 | 333 | 10 | 334 | 1.74e-156 | 445 |
| MS.gene87684.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 101 | 225 | 4.76e-75 | 233 |
| MS.gene87684.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 185 | 309 | 1.69e-73 | 232 |
| MS.gene87684.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 250 | 374 | 3.20e-73 | 234 |
| MS.gene87684.t1 | MTR_1g078410 | 42.222 | 225 | 71 | 2 | 9 | 225 | 5 | 178 | 1.31e-48 | 164 |
| MS.gene87684.t1 | MTR_2g096530 | 27.701 | 361 | 171 | 13 | 42 | 314 | 27 | 385 | 5.06e-22 | 99.0 |
| MS.gene87684.t1 | MTR_8g089725 | 26.282 | 468 | 227 | 19 | 53 | 405 | 38 | 502 | 4.00e-21 | 95.5 |
| MS.gene87684.t1 | MTR_8g089745 | 24.682 | 393 | 196 | 12 | 10 | 317 | 8 | 385 | 8.19e-21 | 94.7 |
| MS.gene87684.t1 | MTR_8g089740 | 26.396 | 394 | 189 | 14 | 10 | 317 | 3 | 381 | 1.01e-20 | 94.7 |
| MS.gene87684.t1 | MTR_8g089745 | 24.682 | 393 | 196 | 12 | 10 | 317 | 8 | 385 | 1.97e-20 | 94.0 |
| MS.gene87684.t1 | MTR_8g089735 | 26.068 | 468 | 228 | 19 | 53 | 405 | 38 | 502 | 2.32e-20 | 93.2 |
| MS.gene87684.t1 | MTR_3g086580 | 24.438 | 356 | 177 | 11 | 49 | 314 | 36 | 389 | 1.83e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87684.t1 | AT5G08380 | 75.245 | 408 | 101 | 0 | 2 | 409 | 3 | 410 | 0.0 | 652 |
| MS.gene87684.t1 | AT5G08370 | 66.484 | 364 | 121 | 1 | 42 | 405 | 29 | 391 | 0.0 | 525 |
| MS.gene87684.t1 | AT5G08370 | 66.120 | 366 | 123 | 1 | 40 | 405 | 1 | 365 | 0.0 | 525 |
| MS.gene87684.t1 | AT5G08380 | 77.070 | 314 | 72 | 0 | 2 | 315 | 3 | 316 | 0.0 | 511 |
| MS.gene87684.t1 | AT3G56310 | 59.840 | 376 | 147 | 2 | 35 | 407 | 55 | 429 | 1.61e-164 | 469 |
| MS.gene87684.t1 | AT3G56310 | 56.117 | 376 | 137 | 3 | 35 | 407 | 55 | 405 | 8.63e-148 | 426 |
| MS.gene87684.t1 | AT3G26380 | 24.148 | 352 | 177 | 11 | 53 | 317 | 42 | 390 | 5.00e-18 | 86.3 |
| MS.gene87684.t1 | AT3G26380 | 24.148 | 352 | 177 | 11 | 53 | 317 | 42 | 390 | 1.09e-17 | 85.5 |
Find 101 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGGCTCCTCTTCTTCT+AGG | 0.178877 | 7.1:-28845691 | MS.gene87684:intron |
| CTGGTGACATAACTGATAAT+TGG | 0.210872 | 7.1:-28852274 | MS.gene87684:CDS |
| ATATGGGCAGGTCCTCTTTC+AGG | 0.213190 | 7.1:-28845185 | MS.gene87684:CDS |
| TGTGTCACTGCTTCATCATT+AGG | 0.260692 | 7.1:-28854305 | MS.gene87684:CDS |
| AGATTAATGTAACAGCTAAT+TGG | 0.263880 | 7.1:-28845121 | MS.gene87684:CDS |
| CGAACTTAATCGCGATAATA+AGG | 0.278598 | 7.1:-28853595 | MS.gene87684:intron |
| GAGATATGCATCCAGCTAAA+TGG | 0.281278 | 7.1:-28852328 | MS.gene87684:CDS |
| ATTTGAGATGGTGGTGGTTT+TGG | 0.309054 | 7.1:-28854354 | MS.gene87684:CDS |
| TACCCATGATGCAAAAGTTT+TGG | 0.334662 | 7.1:+28853226 | None:intergenic |
| GTGTCACTGCTTCATCATTA+GGG | 0.339417 | 7.1:-28854304 | MS.gene87684:CDS |
| TTTCCAACCTCAAGCATATC+AGG | 0.349661 | 7.1:+28845994 | None:intergenic |
| CTTATTATCGCGATTAAGTT+CGG | 0.355063 | 7.1:+28853596 | None:intergenic |
| TTGTTCAAGCAAGAGACCTT+TGG | 0.381720 | 7.1:-28845070 | MS.gene87684:CDS |
| GCTTGGCGTACAAGCTAAAA+AGG | 0.382915 | 7.1:-28845497 | MS.gene87684:CDS |
| CTTGGAGATAGTCTCTAATA+AGG | 0.383311 | 7.1:-28845638 | MS.gene87684:CDS |
| GCTGTTGTGTTGCTTAATAA+AGG | 0.393013 | 7.1:-28845152 | MS.gene87684:CDS |
| TGTTCAAGCAAGAGACCTTT+GGG | 0.394528 | 7.1:-28845069 | MS.gene87684:CDS |
| AGATATGCATCCAGCTAAAT+GGG | 0.395124 | 7.1:-28852327 | MS.gene87684:CDS |
| GATTAATGTAACAGCTAATT+GGG | 0.410058 | 7.1:-28845120 | MS.gene87684:CDS |
| AGGTCCTCTTTCAGGATATA+GGG | 0.411330 | 7.1:-28845177 | MS.gene87684:CDS |
| GCTGATGCCCTTGTTTCAAC+TGG | 0.414005 | 7.1:-28853788 | MS.gene87684:CDS |
| CAGGTCCTCTTTCAGGATAT+AGG | 0.414530 | 7.1:-28845178 | MS.gene87684:CDS |
| ATGAGAAAATACCAGTTTCT+CGG | 0.417413 | 7.1:+28853964 | None:intergenic |
| ATTAAAGCCCGAGTCATAAC+AGG | 0.421626 | 7.1:+28852636 | None:intergenic |
| TGTTATACAGGTGGAATAGT+TGG | 0.421868 | 7.1:-28854022 | MS.gene87684:intron |
| CCTTGGTAAAACTCCTCCTA+TGG | 0.424348 | 7.1:-28854228 | MS.gene87684:CDS |
| TATCGTTCACTTCAGTTTGT+GGG | 0.428514 | 7.1:-28845947 | MS.gene87684:CDS |
| TGGTGACATAACTGATAATT+GGG | 0.429981 | 7.1:-28852273 | MS.gene87684:CDS |
| ATATCGTTCACTTCAGTTTG+TGG | 0.432561 | 7.1:-28845948 | MS.gene87684:CDS |
| TTGTTGCTGCAGATGATTGT+TGG | 0.434548 | 7.1:-28853620 | MS.gene87684:intron |
| AGAAGAAACCTTCTTGCTAA+TGG | 0.435698 | 7.1:-28854251 | MS.gene87684:CDS |
| ACTTTAGCACCCCATTTAGC+TGG | 0.437464 | 7.1:+28852317 | None:intergenic |
| AACCTTCTTGCTAATGGCCT+TGG | 0.440891 | 7.1:-28854245 | MS.gene87684:CDS |
| AAACCAACCAAACATGCAAA+AGG | 0.441393 | 7.1:+28854327 | None:intergenic |
| AGCTAAATGGGGTGCTAAAG+TGG | 0.444772 | 7.1:-28852315 | MS.gene87684:CDS |
| CTTGGAATTTATTCAGATGC+AGG | 0.449478 | 7.1:-28853386 | MS.gene87684:CDS |
| TCTTCTAGAACTCATGCAAC+TGG | 0.450734 | 7.1:+28844797 | None:intergenic |
| GTGCTAAAGTGGGAAATAGT+TGG | 0.469009 | 7.1:-28852304 | MS.gene87684:CDS |
| TACCAAGGCCATTAGCAAGA+AGG | 0.473441 | 7.1:+28854243 | None:intergenic |
| TGTTGCTGCAGATGATTGTT+GGG | 0.474807 | 7.1:-28853619 | MS.gene87684:intron |
| TTATGTACCTATGTTGACAT+AGG | 0.479023 | 7.1:+28853745 | None:intergenic |
| CATAGCAAGGGTCTTAAGCT+TGG | 0.485258 | 7.1:-28853404 | MS.gene87684:CDS |
| TCACATAGCGAAAAGAAGAT+TGG | 0.486370 | 7.1:+28852600 | None:intergenic |
| CAGTTTGTGGGCTATTTCAA+AGG | 0.488558 | 7.1:-28845935 | MS.gene87684:intron |
| ATGCTTGAGGTTGGAAATGG+AGG | 0.493055 | 7.1:-28845988 | MS.gene87684:CDS |
| GATATGCTTGAGGTTGGAAA+TGG | 0.493237 | 7.1:-28845991 | MS.gene87684:CDS |
| ACATGTAGCAAACAAATGCC+TGG | 0.496161 | 7.1:-28853275 | MS.gene87684:CDS |
| GGAAATAGTTGGAGAACTAC+TGG | 0.506903 | 7.1:-28852293 | MS.gene87684:CDS |
| TATGACTCGGGCTTTAATGA+AGG | 0.508006 | 7.1:-28852631 | MS.gene87684:CDS |
| TGCAGATTATGTTCATAGCA+AGG | 0.510065 | 7.1:-28853417 | MS.gene87684:CDS |
| TCAACTGGTCTATCTAAGCT+TGG | 0.514706 | 7.1:-28853773 | MS.gene87684:CDS |
| CTTACACGCATGTGATTCTA+CGG | 0.515503 | 7.1:+28844835 | None:intergenic |
| GGGAACATCAACAACTATGA+TGG | 0.518469 | 7.1:-28854284 | MS.gene87684:CDS |
| TACACAATGAGGAGTAGGAT+TGG | 0.519358 | 7.1:-28854377 | None:intergenic |
| AAACAAATGCCTGGTTCACT+AGG | 0.520373 | 7.1:-28853266 | MS.gene87684:CDS |
| CTTGGTAAAACTCCTCCTAT+GGG | 0.521865 | 7.1:-28854227 | MS.gene87684:CDS |
| GCTGTTACATTAATCTTCTG+AGG | 0.525815 | 7.1:+28845128 | None:intergenic |
| AGCTTGCAAGACCTGGTGGT+TGG | 0.526013 | 7.1:-28852069 | MS.gene87684:CDS |
| AAATGTGACTAAAGAGACCT+TGG | 0.527242 | 7.1:-28845656 | MS.gene87684:CDS |
| GATCCTGATATGCTTGAGGT+TGG | 0.538064 | 7.1:-28845997 | MS.gene87684:CDS |
| GCAAGACCTGGTGGTTGGAA+TGG | 0.539179 | 7.1:-28852064 | MS.gene87684:intron |
| GATTGGATTTGAGATGGTGG+TGG | 0.540657 | 7.1:-28854360 | MS.gene87684:CDS |
| TTTGTTGGATAGATATGGGC+AGG | 0.543001 | 7.1:-28845197 | MS.gene87684:intron |
| AGATCACAGCCTAGAAGAAG+AGG | 0.543289 | 7.1:+28845682 | None:intergenic |
| GCAGATTATGTTCATAGCAA+GGG | 0.548297 | 7.1:-28853416 | MS.gene87684:CDS |
| TAGATAGACCAGTTGAAACA+AGG | 0.549426 | 7.1:+28853780 | None:intergenic |
| TATGCTGAGCTTGCAAGACC+TGG | 0.553013 | 7.1:-28852076 | MS.gene87684:CDS |
| TTGGAATTTATTCAGATGCA+GGG | 0.559186 | 7.1:-28853385 | MS.gene87684:intron |
| GCTACCCTATATCCTGAAAG+AGG | 0.563682 | 7.1:+28845173 | None:intergenic |
| AACCAACCAAACATGCAAAA+GGG | 0.563850 | 7.1:+28854328 | None:intergenic |
| TGGAGTACACAATGAGGAGT+AGG | 0.565957 | 7.1:-28854382 | None:intergenic |
| AACTCATGACCTAGTGAACC+AGG | 0.568821 | 7.1:+28853257 | None:intergenic |
| TAGGATTGGATTTGAGATGG+TGG | 0.572502 | 7.1:-28854363 | MS.gene87684:CDS |
| TTGACTACCTACCTCACAGT+GGG | 0.572699 | 7.1:+28852772 | None:intergenic |
| ATAGGTATCCTGTTATGACT+CGG | 0.573894 | 7.1:-28852644 | MS.gene87684:intron |
| TAGGTATCCTGTTATGACTC+GGG | 0.579107 | 7.1:-28852643 | MS.gene87684:CDS |
| ACTCGGGCTTTAATGAAGGC+AGG | 0.580189 | 7.1:-28852627 | MS.gene87684:CDS |
| GGATACACCTATGTCAACAT+AGG | 0.584008 | 7.1:-28853752 | MS.gene87684:intron |
| TTTATGCAGTATGATTTCAA+GGG | 0.593167 | 7.1:-28852116 | MS.gene87684:intron |
| CTTATTAGAGACTATCTCCA+AGG | 0.595408 | 7.1:+28845639 | None:intergenic |
| GCTAAATGGGGTGCTAAAGT+GGG | 0.605638 | 7.1:-28852314 | MS.gene87684:CDS |
| ACATAACTGATAATTGGGAA+AGG | 0.607718 | 7.1:-28852268 | MS.gene87684:intron |
| TACAATGAATTACCTCCCAA+AGG | 0.608422 | 7.1:+28845054 | None:intergenic |
| AACAGATCCTGATATGCTTG+AGG | 0.609688 | 7.1:-28846001 | MS.gene87684:intron |
| TTCTAACCATTCCAACCACC+AGG | 0.610518 | 7.1:+28852058 | None:intergenic |
| TATCACACGATAGATTCGCT+TGG | 0.610905 | 7.1:-28845514 | MS.gene87684:intron |
| GCAAGAGCTTTGATGCCAGA+AGG | 0.611987 | 7.1:+28853437 | None:intergenic |
| GCTGAGCTTGCAAGACCTGG+TGG | 0.617565 | 7.1:-28852073 | MS.gene87684:CDS |
| ACAGCTAATTGGGATGACAT+TGG | 0.629945 | 7.1:-28845110 | MS.gene87684:CDS |
| GAGTAGGATTGGATTTGAGA+TGG | 0.633817 | 7.1:-28854366 | MS.gene87684:CDS |
| TGCTTGAGGTTGGAAATGGA+GGG | 0.639239 | 7.1:-28845987 | MS.gene87684:CDS |
| GAAGTTATTACAGTTAACCA+AGG | 0.643404 | 7.1:-28845616 | MS.gene87684:intron |
| AGATAGACCAGTTGAAACAA+GGG | 0.645698 | 7.1:+28853781 | None:intergenic |
| CAGGATGGAAGGTGATGCTG+AGG | 0.646471 | 7.1:-28845473 | MS.gene87684:intron |
| TCAGTGACATACCCCATAGG+AGG | 0.646596 | 7.1:+28854215 | None:intergenic |
| AATTCAGTGACATACCCCAT+AGG | 0.669127 | 7.1:+28854212 | None:intergenic |
| TTGGTAAAACTCCTCCTATG+GGG | 0.687837 | 7.1:-28854226 | MS.gene87684:intron |
| GATATGCATCCAGCTAAATG+GGG | 0.703250 | 7.1:-28852326 | MS.gene87684:CDS |
| TCAAGCAAGAGACCTTTGGG+AGG | 0.722019 | 7.1:-28845066 | MS.gene87684:intron |
| TTTGACTACCTACCTCACAG+TGG | 0.727048 | 7.1:+28852771 | None:intergenic |
| ATGAATCAAAGCCCACTGTG+AGG | 0.728024 | 7.1:-28852783 | MS.gene87684:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 28844808 | 28854393 | 28844808 | ID=MS.gene87684 |
| chr7.1 | mRNA | 28844808 | 28854393 | 28844808 | ID=MS.gene87684.t1;Parent=MS.gene87684 |
| chr7.1 | exon | 28854227 | 28854393 | 28854227 | ID=MS.gene87684.t1.exon1;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28854227 | 28854393 | 28854227 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28853976 | 28854034 | 28853976 | ID=MS.gene87684.t1.exon2;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28853976 | 28854034 | 28853976 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28853753 | 28853809 | 28853753 | ID=MS.gene87684.t1.exon3;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28853753 | 28853809 | 28853753 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28853596 | 28853630 | 28853596 | ID=MS.gene87684.t1.exon4;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28853596 | 28853630 | 28853596 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28853386 | 28853489 | 28853386 | ID=MS.gene87684.t1.exon5;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28853386 | 28853489 | 28853386 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28853229 | 28853304 | 28853229 | ID=MS.gene87684.t1.exon6;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28853229 | 28853304 | 28853229 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28852784 | 28852842 | 28852784 | ID=MS.gene87684.t1.exon7;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28852784 | 28852842 | 28852784 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28852597 | 28852662 | 28852597 | ID=MS.gene87684.t1.exon8;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28852597 | 28852662 | 28852597 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28852269 | 28852352 | 28852269 | ID=MS.gene87684.t1.exon9;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28852269 | 28852352 | 28852269 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28852065 | 28852129 | 28852065 | ID=MS.gene87684.t1.exon10;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28852065 | 28852129 | 28852065 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28845936 | 28846018 | 28845936 | ID=MS.gene87684.t1.exon11;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28845936 | 28846018 | 28845936 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28845617 | 28845707 | 28845617 | ID=MS.gene87684.t1.exon12;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28845617 | 28845707 | 28845617 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28845474 | 28845523 | 28845474 | ID=MS.gene87684.t1.exon13;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28845474 | 28845523 | 28845474 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28845067 | 28845207 | 28845067 | ID=MS.gene87684.t1.exon14;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28845067 | 28845207 | 28845067 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| chr7.1 | exon | 28844808 | 28844900 | 28844808 | ID=MS.gene87684.t1.exon15;Parent=MS.gene87684.t1 |
| chr7.1 | CDS | 28844808 | 28844900 | 28844808 | ID=cds.MS.gene87684.t1;Parent=MS.gene87684.t1 |
| Gene Sequence |
| Protein sequence |
