Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06516.t1 | XP_013461524.1 | 97.6 | 340 | 8 | 0 | 36 | 375 | 93 | 432 | 1.20E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06516.t1 | Q8VXZ7 | 72.3 | 339 | 94 | 0 | 36 | 374 | 97 | 435 | 6.9e-140 | 498.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06516.t1 | A0A072V0K8 | 97.6 | 340 | 8 | 0 | 36 | 375 | 93 | 432 | 8.5e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06516.t1 | MTR_3g094160 | 97.647 | 340 | 8 | 0 | 36 | 375 | 93 | 432 | 0.0 | 694 |
| MS.gene06516.t1 | MTR_1g077520 | 63.988 | 336 | 116 | 3 | 36 | 370 | 78 | 409 | 8.84e-162 | 459 |
| MS.gene06516.t1 | MTR_1g077480 | 63.798 | 337 | 111 | 4 | 36 | 368 | 82 | 411 | 1.08e-158 | 452 |
| MS.gene06516.t1 | MTR_6g086625 | 62.908 | 337 | 114 | 4 | 36 | 368 | 76 | 405 | 6.01e-157 | 447 |
| MS.gene06516.t1 | MTR_6g069140 | 63.609 | 338 | 112 | 4 | 36 | 369 | 90 | 420 | 1.79e-156 | 447 |
| MS.gene06516.t1 | MTR_6g086575 | 62.575 | 334 | 120 | 3 | 36 | 368 | 75 | 404 | 2.30e-156 | 446 |
| MS.gene06516.t1 | MTR_7g073640 | 62.388 | 335 | 121 | 3 | 36 | 368 | 76 | 407 | 2.53e-148 | 426 |
| MS.gene06516.t1 | MTR_7g073650 | 62.090 | 335 | 122 | 3 | 36 | 368 | 75 | 406 | 3.29e-148 | 425 |
| MS.gene06516.t1 | MTR_1g077520 | 70.000 | 250 | 74 | 1 | 36 | 284 | 78 | 327 | 1.37e-133 | 385 |
| MS.gene06516.t1 | MTR_1g078410 | 59.200 | 125 | 50 | 1 | 66 | 189 | 60 | 184 | 1.58e-42 | 147 |
| MS.gene06516.t1 | MTR_0279s0030 | 53.175 | 126 | 55 | 2 | 244 | 368 | 101 | 223 | 6.77e-38 | 136 |
| MS.gene06516.t1 | MTR_0279s0030 | 53.175 | 126 | 55 | 2 | 244 | 368 | 185 | 307 | 5.88e-37 | 136 |
| MS.gene06516.t1 | MTR_0279s0030 | 53.175 | 126 | 55 | 2 | 244 | 368 | 250 | 372 | 4.07e-36 | 135 |
| MS.gene06516.t1 | MTR_3g094180 | 87.879 | 66 | 8 | 0 | 274 | 339 | 4 | 69 | 3.42e-34 | 122 |
| MS.gene06516.t1 | MTR_8g089745 | 25.000 | 324 | 156 | 11 | 38 | 275 | 63 | 385 | 3.59e-13 | 70.9 |
| MS.gene06516.t1 | MTR_8g089745 | 25.000 | 324 | 156 | 11 | 38 | 275 | 63 | 385 | 4.12e-13 | 71.2 |
| MS.gene06516.t1 | MTR_8g089740 | 25.076 | 327 | 153 | 10 | 38 | 275 | 58 | 381 | 7.09e-13 | 70.5 |
| MS.gene06516.t1 | MTR_8g089725 | 22.398 | 442 | 228 | 16 | 38 | 366 | 63 | 502 | 7.88e-13 | 70.1 |
| MS.gene06516.t1 | MTR_8g089735 | 22.398 | 442 | 228 | 16 | 38 | 366 | 63 | 502 | 8.46e-13 | 70.1 |
| MS.gene06516.t1 | MTR_3g086580 | 24.085 | 328 | 153 | 11 | 38 | 272 | 65 | 389 | 8.76e-13 | 70.1 |
| MS.gene06516.t1 | MTR_2g096530 | 23.913 | 322 | 157 | 9 | 38 | 272 | 65 | 385 | 4.16e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06516.t1 | AT3G56310 | 76.991 | 339 | 78 | 0 | 36 | 374 | 97 | 435 | 0.0 | 568 |
| MS.gene06516.t1 | AT3G56310 | 72.861 | 339 | 68 | 1 | 36 | 374 | 97 | 411 | 0.0 | 523 |
| MS.gene06516.t1 | AT5G08370 | 63.205 | 337 | 119 | 3 | 36 | 371 | 38 | 370 | 5.92e-156 | 443 |
| MS.gene06516.t1 | AT5G08370 | 63.205 | 337 | 119 | 3 | 36 | 371 | 64 | 396 | 1.03e-155 | 444 |
| MS.gene06516.t1 | AT5G08380 | 61.377 | 334 | 125 | 2 | 36 | 368 | 78 | 408 | 2.57e-150 | 431 |
| MS.gene06516.t1 | AT5G08380 | 68.201 | 239 | 75 | 1 | 36 | 273 | 78 | 316 | 1.49e-119 | 349 |
| MS.gene06516.t1 | AT3G26380 | 23.385 | 325 | 161 | 10 | 38 | 275 | 67 | 390 | 1.76e-13 | 72.0 |
| MS.gene06516.t1 | AT3G26380 | 23.292 | 322 | 159 | 10 | 38 | 272 | 67 | 387 | 1.91e-13 | 72.0 |
Find 102 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTGACAAGAAATTTAA+AGG | 0.225462 | 3.2:+78950797 | MS.gene06516:CDS |
| TTGCAGCATAAGGTAATAAA+TGG | 0.260118 | 3.2:+78953982 | MS.gene06516:intron |
| CAACTTGAACTTTCCTTCCT+TGG | 0.282948 | 3.2:-78953376 | None:intergenic |
| ATCGTTTGGCTGTTGCTCTT+TGG | 0.288869 | 3.2:+78953707 | MS.gene06516:CDS |
| TGCAGATTTATTTGCCTCTT+GGG | 0.323327 | 3.2:+78951525 | MS.gene06516:CDS |
| TACAATGTGCAGACGATTGC+TGG | 0.329309 | 3.2:+78950772 | MS.gene06516:intron |
| GTGTTGACGATCCTGCTCTA+TGG | 0.333091 | 3.2:+78952568 | MS.gene06516:CDS |
| ATGCAGATTTATTTGCCTCT+TGG | 0.342982 | 3.2:+78951524 | MS.gene06516:CDS |
| GCTTAAAATTTCGAATGTTT+CGG | 0.347419 | 3.2:-78953147 | None:intergenic |
| GAAGCACTTGGGCTTGAATC+TGG | 0.353679 | 3.2:+78953769 | MS.gene06516:CDS |
| GTTCAAGTTGCTGGAATAGA+TGG | 0.358856 | 3.2:+78953389 | MS.gene06516:CDS |
| TGAAGTGAGCACGGTATTCC+TGG | 0.364079 | 3.2:-78952988 | None:intergenic |
| GCCAAACGATTTCCTGATAA+AGG | 0.371429 | 3.2:-78953694 | None:intergenic |
| GTCTGGGCAGGTCCTTTATC+AGG | 0.376851 | 3.2:+78953682 | MS.gene06516:CDS |
| GGAAGGAAAGTTCAAGTTGC+TGG | 0.382276 | 3.2:+78953380 | MS.gene06516:CDS |
| ATTGCCAACTTCCAACATAT+CGG | 0.393715 | 3.2:-78952951 | None:intergenic |
| TCCTTTATCAGGAAATCGTT+TGG | 0.403234 | 3.2:+78953693 | MS.gene06516:CDS |
| CTGGAATTCATGTTTCTGTA+AGG | 0.406758 | 3.2:+78953788 | MS.gene06516:CDS |
| AACATATATATCACTCTTAA+CGG | 0.410450 | 3.2:-78950522 | None:intergenic |
| ACCGTGCTCACTTCAGCATA+TGG | 0.411756 | 3.2:+78952996 | MS.gene06516:CDS |
| ATCAACTGGGTTGGCCAAGT+TGG | 0.413787 | 3.2:+78950649 | MS.gene06516:CDS |
| GTATGACAATTGTTACAATC+TGG | 0.413803 | 3.2:+78952287 | MS.gene06516:CDS |
| TGGGCTGCATATGCCGGTCC+TGG | 0.417041 | 3.2:+78952826 | MS.gene06516:CDS |
| GCTGATGCACTGGTATCAAC+TGG | 0.423482 | 3.2:+78950635 | MS.gene06516:intron |
| CTGGCACGGTTGGTAATAGT+TGG | 0.432424 | 3.2:+78952592 | MS.gene06516:CDS |
| TCAACTGGGTTGGCCAAGTT+GGG | 0.433776 | 3.2:+78950650 | MS.gene06516:CDS |
| GATGGAAATGTCTTACGATC+AGG | 0.434606 | 3.2:-78951290 | None:intergenic |
| GGTTATGTGTACGTCAATAT+AGG | 0.436209 | 3.2:+78950671 | MS.gene06516:CDS |
| TCCCTTCCCATGGACATAAT+CGG | 0.441983 | 3.2:-78951330 | None:intergenic |
| TTGCCAACTTCCAACATATC+GGG | 0.455011 | 3.2:-78952950 | None:intergenic |
| CCGATGACATCAATGATACA+TGG | 0.456542 | 3.2:+78952622 | MS.gene06516:CDS |
| GCTCTATGGGCTGGCACGGT+TGG | 0.458882 | 3.2:+78952582 | MS.gene06516:CDS |
| ATGTTTCTGTAAGGGATTTG+TGG | 0.463443 | 3.2:+78953797 | MS.gene06516:CDS |
| GACCGATGGGCTGCATATGC+CGG | 0.472336 | 3.2:+78952820 | MS.gene06516:CDS |
| TGTTGACGATCCTGCTCTAT+GGG | 0.475678 | 3.2:+78952569 | MS.gene06516:CDS |
| TTCTGTAAGGGATTTGTGGC+AGG | 0.477206 | 3.2:+78953801 | MS.gene06516:CDS |
| AATTTCTTTATGAAGTCAAA+AGG | 0.478272 | 3.2:+78950490 | MS.gene06516:CDS |
| GAAGTCATTGCTGTAAATCA+AGG | 0.478784 | 3.2:+78953176 | MS.gene06516:CDS |
| GCAGAGTAAGATGCTGTAGA+TGG | 0.482664 | 3.2:-78954069 | None:intergenic |
| TGTCTCTCTGCAGACTCACT+TGG | 0.485221 | 3.2:+78953350 | MS.gene06516:intron |
| AACTGAATTACTGATTGCAT+TGG | 0.489711 | 3.2:-78950547 | None:intergenic |
| CAATGGTGGCATGACTTACC+AGG | 0.490618 | 3.2:+78952970 | MS.gene06516:CDS |
| GACGATCCTGCTCTATGGGC+TGG | 0.502382 | 3.2:+78952573 | MS.gene06516:CDS |
| TGGAATAGATGGTTGTAGTC+AGG | 0.503086 | 3.2:+78953400 | MS.gene06516:CDS |
| GCACTTGCCGATTATGTCCA+TGG | 0.503218 | 3.2:+78951323 | MS.gene06516:CDS |
| TATGACAATTGTTACAATCT+GGG | 0.503413 | 3.2:+78952288 | MS.gene06516:CDS |
| CCGTGCTCACTTCAGCATAT+GGG | 0.507268 | 3.2:+78952997 | MS.gene06516:CDS |
| TGGAATTCATGTTTCTGTAA+GGG | 0.508255 | 3.2:+78953789 | MS.gene06516:CDS |
| ATGTCTTACGATCAGGGACC+AGG | 0.511454 | 3.2:-78951283 | None:intergenic |
| TTTACGACCAGTGTCATTGA+GGG | 0.516966 | 3.2:-78952436 | None:intergenic |
| TTCGACAGACCCCGATATGT+TGG | 0.518184 | 3.2:+78952940 | MS.gene06516:intron |
| CATATGCCGGTCCTGGAGGA+TGG | 0.519568 | 3.2:+78952833 | MS.gene06516:CDS |
| TTGCTGATCTTAATGACCGA+TGG | 0.521286 | 3.2:+78952806 | MS.gene06516:CDS |
| CGTGGAAAATTGATCCTGGT+CGG | 0.524701 | 3.2:-78951492 | None:intergenic |
| ATTTATTTACAGGTCTGGGC+AGG | 0.524714 | 3.2:+78953670 | MS.gene06516:intron |
| GCCGATTATGTCCATGGGAA+GGG | 0.529046 | 3.2:+78951329 | MS.gene06516:CDS |
| TATCCTTGCAGCTGATGCAC+TGG | 0.533289 | 3.2:+78950625 | MS.gene06516:intron |
| GCAAGTGCTTTGATTCCTGA+TGG | 0.533880 | 3.2:-78951308 | None:intergenic |
| ACAGCATCATGGGAAGCACT+TGG | 0.535584 | 3.2:+78953757 | MS.gene06516:CDS |
| CTTGGCATATATTCTGATGC+TGG | 0.535596 | 3.2:+78951359 | MS.gene06516:CDS |
| GCAAAATAAAATCTTGAGGA+AGG | 0.537043 | 3.2:+78950458 | MS.gene06516:CDS |
| CATGGGAAGGGACTCAAGCT+TGG | 0.538301 | 3.2:+78951341 | MS.gene06516:CDS |
| TTGCGACTATAACAGCATCA+TGG | 0.540422 | 3.2:+78953746 | MS.gene06516:CDS |
| TCCTGCTCTATGGGCTGGCA+CGG | 0.541333 | 3.2:+78952578 | MS.gene06516:CDS |
| GGTGTACCATTCCATCCTCC+AGG | 0.542408 | 3.2:-78952844 | None:intergenic |
| GACGTACACATAACCCAACT+TGG | 0.542647 | 3.2:-78950663 | None:intergenic |
| ACCATTCCATCCTCCAGGAC+CGG | 0.542782 | 3.2:-78952839 | None:intergenic |
| GCCGGTCCTGGAGGATGGAA+TGG | 0.543310 | 3.2:+78952838 | MS.gene06516:CDS |
| ACCGTGCCAGCCCATAGAGC+AGG | 0.543587 | 3.2:-78952579 | None:intergenic |
| GCAGACTCACTTGGAGTCCA+AGG | 0.547998 | 3.2:+78953359 | MS.gene06516:intron |
| GATCGTAAGACATTTCCATC+AGG | 0.548086 | 3.2:+78951293 | MS.gene06516:CDS |
| TGCTGATCTTAATGACCGAT+GGG | 0.548796 | 3.2:+78952807 | MS.gene06516:CDS |
| CAGCATATGGGCTTTAGCAA+AGG | 0.551600 | 3.2:+78953009 | MS.gene06516:CDS |
| TGCGACTATAACAGCATCAT+GGG | 0.557475 | 3.2:+78953747 | MS.gene06516:CDS |
| GACCCCGATATGTTGGAAGT+TGG | 0.558301 | 3.2:+78952947 | MS.gene06516:intron |
| ACATCGCAACCAATCAAAAG+AGG | 0.562580 | 3.2:-78953110 | None:intergenic |
| TTGGCATATATTCTGATGCT+GGG | 0.564745 | 3.2:+78951360 | MS.gene06516:CDS |
| ATGGAAATGTCTTACGATCA+GGG | 0.566931 | 3.2:-78951289 | None:intergenic |
| TTTGGAAGTGTAGGGTGACC+TGG | 0.567490 | 3.2:+78951265 | MS.gene06516:intron |
| CCATGTATCATTGATGTCAT+CGG | 0.571669 | 3.2:-78952622 | None:intergenic |
| TGCCGATTATGTCCATGGGA+AGG | 0.578023 | 3.2:+78951328 | MS.gene06516:CDS |
| CAGCATCATGGGAAGCACTT+GGG | 0.579469 | 3.2:+78953758 | MS.gene06516:CDS |
| GACCGGCATATGCAGCCCAT+CGG | 0.586985 | 3.2:-78952822 | None:intergenic |
| TTTACATGTCAAGTCCGACC+AGG | 0.587998 | 3.2:+78951478 | MS.gene06516:CDS |
| CACTTGCCGATTATGTCCAT+GGG | 0.592383 | 3.2:+78951324 | MS.gene06516:CDS |
| CCCATATGCTGAAGTGAGCA+CGG | 0.599322 | 3.2:-78952997 | None:intergenic |
| ACTCACTTGGAGTCCAAGGA+AGG | 0.601676 | 3.2:+78953363 | MS.gene06516:CDS |
| AAATGCAAAATAAAATCTTG+AGG | 0.604726 | 3.2:+78950454 | None:intergenic |
| TTGAGGGCATCACGCATAGG+TGG | 0.611936 | 3.2:-78952420 | None:intergenic |
| CGATGACATCAATGATACAT+GGG | 0.614007 | 3.2:+78952623 | MS.gene06516:CDS |
| ATGTTGGAAGTTGGCAATGG+TGG | 0.621869 | 3.2:+78952956 | MS.gene06516:CDS |
| TCATTGAGGGCATCACGCAT+AGG | 0.622979 | 3.2:-78952423 | None:intergenic |
| CTGATGCACTGGTATCAACT+GGG | 0.623273 | 3.2:+78950636 | MS.gene06516:CDS |
| TGCACTGGTATCAACTGGGT+TGG | 0.624516 | 3.2:+78950640 | MS.gene06516:CDS |
| CAAGCTTGAGTCCCTTCCCA+TGG | 0.642664 | 3.2:-78951340 | None:intergenic |
| ACATCAATGATACATGGGCA+AGG | 0.643423 | 3.2:+78952628 | MS.gene06516:CDS |
| CGTGATGCCCTCAATGACAC+TGG | 0.647275 | 3.2:+78952429 | MS.gene06516:CDS |
| TGCCAACTTCCAACATATCG+GGG | 0.658114 | 3.2:-78952949 | None:intergenic |
| TAAAATTTCGAATGTTTCGG+CGG | 0.663405 | 3.2:-78953144 | None:intergenic |
| ATATTAGAATCTAACCCAAG+AGG | 0.678750 | 3.2:-78951539 | None:intergenic |
| GATATGTTGGAAGTTGGCAA+TGG | 0.679682 | 3.2:+78952953 | MS.gene06516:CDS |
| GCTGCATATGCCGGTCCTGG+AGG | 0.687897 | 3.2:+78952829 | MS.gene06516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAAATAAAAAAAA+AGG | - | chr3.2:78953211-78953230 | None:intergenic | 0.0% |
| !! | AATAAAAAAATAAAAAAAAA+GGG | - | chr3.2:78953210-78953229 | None:intergenic | 0.0% |
| !! | CAAATATATAAATATAGAAT+AGG | - | chr3.2:78950741-78950760 | None:intergenic | 10.0% |
| !! | TAAATAAATATGTAAAACTA+AGG | - | chr3.2:78953659-78953678 | None:intergenic | 10.0% |
| !! | TAATTAAATTTCAAAAAGAT+AGG | - | chr3.2:78952868-78952887 | None:intergenic | 10.0% |
| !!! | TTATTTCTTAAATATATCAA+AGG | - | chr3.2:78951019-78951038 | None:intergenic | 10.0% |
| !! | AAAAAAATAAAAAAAAAGGG+TGG | - | chr3.2:78953207-78953226 | None:intergenic | 15.0% |
| !! | AAATACTAAAAGTAATTAGA+CGG | - | chr3.2:78953922-78953941 | None:intergenic | 15.0% |
| !! | AATATTAAAATTGTAACAGT+GGG | + | chr3.2:78950712-78950731 | MS.gene06516:intron | 15.0% |
| !! | AATTCTTAAATGAAAATGAA+TGG | + | chr3.2:78951845-78951864 | MS.gene06516:intron | 15.0% |
| !! | ACTACATTATAAACAAAATT+TGG | - | chr3.2:78952737-78952756 | None:intergenic | 15.0% |
| !! | AGAAAATAAGTTTAGAAAAT+AGG | - | chr3.2:78953898-78953917 | None:intergenic | 15.0% |
| !! | TTCATTTATCTTATTCAAAA+AGG | + | chr3.2:78953301-78953320 | MS.gene06516:intron | 15.0% |
| !! | TTTCAATTAAAATAAGTGTA+TGG | - | chr3.2:78953549-78953568 | None:intergenic | 15.0% |
| !!! | AGTTTTACATATTTATTTAC+AGG | + | chr3.2:78953660-78953679 | MS.gene06516:intron | 15.0% |
| !!! | CTAATTACTTTTAGTATTTA+AGG | + | chr3.2:78953923-78953942 | MS.gene06516:intron | 15.0% |
| !! | AAATGAAAAAATTATACACC+AGG | - | chr3.2:78953288-78953307 | None:intergenic | 20.0% |
| !! | AACATATATATCACTCTTAA+CGG | - | chr3.2:78950525-78950544 | None:intergenic | 20.0% |
| !! | AATTTCTTTATGAAGTCAAA+AGG | + | chr3.2:78950490-78950509 | MS.gene06516:CDS | 20.0% |
| !! | ACATATAAATTGAATCATTG+TGG | + | chr3.2:78952378-78952397 | MS.gene06516:intron | 20.0% |
| !! | ATTATAAACAAAATTTGGAC+AGG | - | chr3.2:78952732-78952751 | None:intergenic | 20.0% |
| !! | CAATATTAAAATTGTAACAG+TGG | + | chr3.2:78950711-78950730 | MS.gene06516:intron | 20.0% |
| !! | CTTCATAAATAAATAGTTTG+CGG | + | chr3.2:78952190-78952209 | MS.gene06516:intron | 20.0% |
| !! | TACTTTCACAAAATTATACA+TGG | + | chr3.2:78951388-78951407 | MS.gene06516:intron | 20.0% |
| !! | TGATTCAATTTATATGTACT+AGG | - | chr3.2:78952375-78952394 | None:intergenic | 20.0% |
| !! | TGCAAAAACAATAGTATAAT+GGG | - | chr3.2:78952545-78952564 | None:intergenic | 20.0% |
| !!! | ATTATACTATTGTTTTTGCA+GGG | + | chr3.2:78952545-78952564 | MS.gene06516:intron | 20.0% |
| !!! | CACTGTTACAATTTTAATAT+TGG | - | chr3.2:78950713-78950732 | None:intergenic | 20.0% |
| !!! | CAGCATAATATATCTTTTTA+TGG | + | chr3.2:78951706-78951725 | MS.gene06516:intron | 20.0% |
| !!! | CATATGTTAATGTTATGTTT+TGG | + | chr3.2:78950955-78950974 | MS.gene06516:intron | 20.0% |
| !!! | TAGTACTATAACTTTAAGTT+GGG | - | chr3.2:78953617-78953636 | None:intergenic | 20.0% |
| !!! | TCAATGATTGATAACTATTA+AGG | - | chr3.2:78951880-78951899 | None:intergenic | 20.0% |
| !!! | TTAATATAAGTTGATGCTTA+AGG | + | chr3.2:78953231-78953250 | MS.gene06516:intron | 20.0% |
| !!! | TTTTTGTTATGAGTTACTTA+CGG | + | chr3.2:78952500-78952519 | MS.gene06516:intron | 20.0% |
| ! | AAAGTTAGTCATAATGAACA+TGG | - | chr3.2:78951438-78951457 | None:intergenic | 25.0% |
| ! | AAGTTAGTCATAATGAACAT+GGG | - | chr3.2:78951437-78951456 | None:intergenic | 25.0% |
| ! | ACATATTTATTTACAGGTCT+GGG | + | chr3.2:78953666-78953685 | MS.gene06516:intron | 25.0% |
| ! | ACTATTTATTTATGAAGCAG+CGG | - | chr3.2:78952187-78952206 | None:intergenic | 25.0% |
| ! | ATATCACTGAATATACTTGA+GGG | + | chr3.2:78950843-78950862 | MS.gene06516:intron | 25.0% |
| ! | CCCTGATAAAATTATAGAAT+GGG | - | chr3.2:78952252-78952271 | None:intergenic | 25.0% |
| ! | CTGCAAAAACAATAGTATAA+TGG | - | chr3.2:78952546-78952565 | None:intergenic | 25.0% |
| ! | CTTCCAAATCAAATATAGTA+AGG | - | chr3.2:78951253-78951272 | None:intergenic | 25.0% |
| ! | GCTTAAAATTTCGAATGTTT+CGG | - | chr3.2:78953150-78953169 | None:intergenic | 25.0% |
| ! | GTAGTACTATAACTTTAAGT+TGG | - | chr3.2:78953618-78953637 | None:intergenic | 25.0% |
| ! | GTATATTCAGTGATATCAAA+AGG | - | chr3.2:78950839-78950858 | None:intergenic | 25.0% |
| ! | GTTCCTTACTATATTTGATT+TGG | + | chr3.2:78951247-78951266 | MS.gene06516:intron | 25.0% |
| ! | TACATATTTATTTACAGGTC+TGG | + | chr3.2:78953665-78953684 | MS.gene06516:intron | 25.0% |
| ! | TATGACAATTGTTACAATCT+GGG | + | chr3.2:78952288-78952307 | MS.gene06516:CDS | 25.0% |
| ! | TCAAAAAGGTTAAATGAGTA+AGG | + | chr3.2:78953315-78953334 | MS.gene06516:intron | 25.0% |
| ! | TGATAAAATTATAGAATGGG+AGG | - | chr3.2:78952249-78952268 | None:intergenic | 25.0% |
| ! | TGTTCATAATAACAATACTG+TGG | + | chr3.2:78953042-78953061 | MS.gene06516:intron | 25.0% |
| ! | TTCAGACTTCTAGATATTTA+TGG | - | chr3.2:78953507-78953526 | None:intergenic | 25.0% |
| ! | TTCTGTGACAAGAAATTTAA+AGG | + | chr3.2:78950797-78950816 | MS.gene06516:CDS | 25.0% |
| !! | CCCATTCTATAATTTTATCA+GGG | + | chr3.2:78952249-78952268 | MS.gene06516:intron | 25.0% |
| !! | GGTTCATTCAACATTTTATT+GGG | + | chr3.2:78952679-78952698 | MS.gene06516:intron | 25.0% |
| !! | GTTCATTCAACATTTTATTG+GGG | + | chr3.2:78952680-78952699 | MS.gene06516:intron | 25.0% |
| !! | TCCCATTCTATAATTTTATC+AGG | + | chr3.2:78952248-78952267 | MS.gene06516:intron | 25.0% |
| !! | TGGTTCATTCAACATTTTAT+TGG | + | chr3.2:78952678-78952697 | MS.gene06516:intron | 25.0% |
| !! | TTCTTGTTTATATTGTTACC+TGG | + | chr3.2:78953267-78953286 | MS.gene06516:intron | 25.0% |
| !!! | ATATTTGATTTGGAAGTGTA+GGG | + | chr3.2:78951257-78951276 | MS.gene06516:intron | 25.0% |
| !!! | CATTATACTATTGTTTTTGC+AGG | + | chr3.2:78952544-78952563 | MS.gene06516:intron | 25.0% |
| !!! | TATATTTGATTTGGAAGTGT+AGG | + | chr3.2:78951256-78951275 | MS.gene06516:intron | 25.0% |
| !!! | TGAAATTATTTTTCCACAAC+TGG | + | chr3.2:78953523-78953542 | MS.gene06516:intron | 25.0% |
| !!! | TTATACTATTGTTTTTGCAG+GGG | + | chr3.2:78952546-78952565 | MS.gene06516:intron | 25.0% |
| AATGAGAACATCATATCCAA+AGG | - | chr3.2:78951765-78951784 | None:intergenic | 30.0% | |
| ATATTAGAATCTAACCCAAG+AGG | - | chr3.2:78951542-78951561 | None:intergenic | 30.0% | |
| CATCAGATGTAATTTAAACC+TGG | - | chr3.2:78951669-78951688 | None:intergenic | 30.0% | |
| CATTAACACCAAACTGAATT+TGG | + | chr3.2:78951793-78951812 | MS.gene06516:intron | 30.0% | |
| GATATCACTGAATATACTTG+AGG | + | chr3.2:78950842-78950861 | MS.gene06516:intron | 30.0% | |
| GCAAAATAAAATCTTGAGGA+AGG | + | chr3.2:78950458-78950477 | MS.gene06516:CDS | 30.0% | |
| GCCCTGATAAAATTATAGAA+TGG | - | chr3.2:78952253-78952272 | None:intergenic | 30.0% | |
| GGTAAAATGATACCTAAACT+TGG | + | chr3.2:78952030-78952049 | MS.gene06516:intron | 30.0% | |
| GTATGACAATTGTTACAATC+TGG | + | chr3.2:78952287-78952306 | MS.gene06516:CDS | 30.0% | |
| TAAAATTTCGAATGTTTCGG+CGG | - | chr3.2:78953147-78953166 | None:intergenic | 30.0% | |
| TACGATGTTAAGTCGTTTAA+TGG | + | chr3.2:78951822-78951841 | MS.gene06516:intron | 30.0% | |
| TAGCTTCTAACTTCTATACT+CGG | - | chr3.2:78953576-78953595 | None:intergenic | 30.0% | |
| TATTCTATGTGTGCATTTCA+CGG | + | chr3.2:78951637-78951656 | MS.gene06516:intron | 30.0% | |
| TCTTTCCATTTGTTCTTAGT+TGG | + | chr3.2:78953860-78953879 | MS.gene06516:intron | 30.0% | |
| TGAACAACACTTCTATTCTT+AGG | - | chr3.2:78951609-78951628 | None:intergenic | 30.0% | |
| TGCACTATTCAATTTCTATG+TGG | + | chr3.2:78951159-78951178 | MS.gene06516:intron | 30.0% | |
| TTATGCTGCAAAATAGTGAA+GGG | - | chr3.2:78953973-78953992 | None:intergenic | 30.0% | |
| TTGCAGCATAAGGTAATAAA+TGG | + | chr3.2:78953982-78954001 | MS.gene06516:intron | 30.0% | |
| TTTAGCCAACTAAGAACAAA+TGG | - | chr3.2:78953868-78953887 | None:intergenic | 30.0% | |
| TTTGTTCTTAGTTGGCTAAA+CGG | + | chr3.2:78953868-78953887 | MS.gene06516:intron | 30.0% | |
| ! | AACTGAATTACTGATTGCAT+TGG | - | chr3.2:78950550-78950569 | None:intergenic | 30.0% |
| ! | TATCTTTTTATGGTGTCTGT+TGG | + | chr3.2:78951716-78951735 | MS.gene06516:intron | 30.0% |
| ! | TGGAATTCATGTTTCTGTAA+GGG | + | chr3.2:78953789-78953808 | MS.gene06516:CDS | 30.0% |
| ! | TTTTCTATTCGATCTGTGAA+TGG | + | chr3.2:78952460-78952479 | MS.gene06516:CDS | 30.0% |
| !!! | AACTTTTTCACTTCCTACTT+AGG | + | chr3.2:78951452-78951471 | MS.gene06516:intron | 30.0% |
| !!! | AATGTTATGTTTTGGCTAAG+TGG | + | chr3.2:78950963-78950982 | MS.gene06516:intron | 30.0% |
| !!! | ACGAGAAAAAACCGTTTTTT+TGG | - | chr3.2:78952321-78952340 | None:intergenic | 30.0% |
| !!! | ACTTTTTCACTTCCTACTTA+GGG | + | chr3.2:78951453-78951472 | MS.gene06516:intron | 30.0% |
| !!! | AGAAAAAACCGTTTTTTTGG+AGG | - | chr3.2:78952318-78952337 | None:intergenic | 30.0% |
| !!! | GAAAAAACCGTTTTTTTGGA+GGG | - | chr3.2:78952317-78952336 | None:intergenic | 30.0% |
| AACGACTTAACATCGTATCT+AGG | - | chr3.2:78951819-78951838 | None:intergenic | 35.0% | |
| AAGGAAATAAAACCAGCCTT+TGG | + | chr3.2:78951746-78951765 | MS.gene06516:intron | 35.0% | |
| AGAATCTAACTATGACACAG+TGG | - | chr3.2:78951983-78952002 | None:intergenic | 35.0% | |
| AGTGGACATAATATCTATGG+AGG | - | chr3.2:78951965-78951984 | None:intergenic | 35.0% | |
| ATGCAGATTTATTTGCCTCT+TGG | + | chr3.2:78951524-78951543 | MS.gene06516:CDS | 35.0% | |
| ATGGAAATGTCTTACGATCA+GGG | - | chr3.2:78951292-78951311 | None:intergenic | 35.0% | |
| ATTCTACATACTACGAAGAG+AGG | - | chr3.2:78952094-78952113 | None:intergenic | 35.0% | |
| ATTCTATGTGTGCATTTCAC+GGG | + | chr3.2:78951638-78951657 | MS.gene06516:intron | 35.0% | |
| ATTGCCAACTTCCAACATAT+CGG | - | chr3.2:78952954-78952973 | None:intergenic | 35.0% | |
| CACAGTGGACATAATATCTA+TGG | - | chr3.2:78951968-78951987 | None:intergenic | 35.0% | |
| CATGTAACAAGACCAAGTTT+AGG | - | chr3.2:78952045-78952064 | None:intergenic | 35.0% | |
| CCATGTATCATTGATGTCAT+CGG | - | chr3.2:78952625-78952644 | None:intergenic | 35.0% | |
| CGATGACATCAATGATACAT+GGG | + | chr3.2:78952623-78952642 | MS.gene06516:CDS | 35.0% | |
| CGTAGTATGTAGAATGTAGA+TGG | + | chr3.2:78952099-78952118 | MS.gene06516:intron | 35.0% | |
| CTTATGCTGCAAAATAGTGA+AGG | - | chr3.2:78953974-78953993 | None:intergenic | 35.0% | |
| GAAGTCATTGCTGTAAATCA+AGG | + | chr3.2:78953176-78953195 | MS.gene06516:CDS | 35.0% | |
| GAGATAAGTAAGACTGTTTC+TGG | - | chr3.2:78952906-78952925 | None:intergenic | 35.0% | |
| GGTTATGTGTACGTCAATAT+AGG | + | chr3.2:78950671-78950690 | MS.gene06516:CDS | 35.0% | |
| TATCTAGGCCAAATTCAGTT+TGG | - | chr3.2:78951804-78951823 | None:intergenic | 35.0% | |
| TCCTTTATCAGGAAATCGTT+TGG | + | chr3.2:78953693-78953712 | MS.gene06516:CDS | 35.0% | |
| TCGATCTGTGAATGGTAATA+AGG | + | chr3.2:78952468-78952487 | MS.gene06516:intron | 35.0% | |
| TGCAGATTTATTTGCCTCTT+GGG | + | chr3.2:78951525-78951544 | MS.gene06516:CDS | 35.0% | |
| TGTCTATCCTGACTTTCAAT+TGG | + | chr3.2:78950909-78950928 | MS.gene06516:intron | 35.0% | |
| TTGGCATATATTCTGATGCT+GGG | + | chr3.2:78951360-78951379 | MS.gene06516:CDS | 35.0% | |
| TTGTGCAAAGATGATCTTCT+TGG | + | chr3.2:78951912-78951931 | MS.gene06516:intron | 35.0% | |
| ! | ATGTTTCTGTAAGGGATTTG+TGG | + | chr3.2:78953797-78953816 | MS.gene06516:CDS | 35.0% |
| ! | CTGGAATTCATGTTTCTGTA+AGG | + | chr3.2:78953788-78953807 | MS.gene06516:CDS | 35.0% |
| ! | CTTCACTATTTTGCAGCATA+AGG | + | chr3.2:78953972-78953991 | MS.gene06516:intron | 35.0% |
| ! | GGATCAATTTTCCACGAAAA+TGG | + | chr3.2:78951499-78951518 | MS.gene06516:CDS | 35.0% |
| ! | TTTGCGGTTATGTATTTCTG+TGG | + | chr3.2:78952206-78952225 | MS.gene06516:intron | 35.0% |
| ! | TTTTCGTGGAAAATTGATCC+TGG | - | chr3.2:78951499-78951518 | None:intergenic | 35.0% |
| !! | GCGATAAATTTTGGGTCTTT+TGG | + | chr3.2:78953457-78953476 | MS.gene06516:intron | 35.0% |
| !!! | GGTGTCTGTTGGATTTTTTA+AGG | + | chr3.2:78951727-78951746 | MS.gene06516:intron | 35.0% |
| AATAAGTGTATGGCCAGTTG+TGG | - | chr3.2:78953539-78953558 | None:intergenic | 40.0% | |
| ACATAATATCTATGGAGGCC+TGG | - | chr3.2:78951960-78951979 | None:intergenic | 40.0% | |
| ACATCAATGATACATGGGCA+AGG | + | chr3.2:78952628-78952647 | MS.gene06516:CDS | 40.0% | |
| ACATCGCAACCAATCAAAAG+AGG | - | chr3.2:78953113-78953132 | None:intergenic | 40.0% | |
| ACTACGAGCTTGAAGTATGT+TGG | + | chr3.2:78953633-78953652 | MS.gene06516:intron | 40.0% | |
| AGAACATCATATCCAAAGGC+TGG | - | chr3.2:78951761-78951780 | None:intergenic | 40.0% | |
| AGTTAGAAGCTAGTCCAAAC+TGG | + | chr3.2:78953584-78953603 | MS.gene06516:intron | 40.0% | |
| ATTTATTTACAGGTCTGGGC+AGG | + | chr3.2:78953670-78953689 | MS.gene06516:intron | 40.0% | |
| CAAAAAACACACCAGCACAT+CGG | - | chr3.2:78951081-78951100 | None:intergenic | 40.0% | |
| CAACTTGAACTTTCCTTCCT+TGG | - | chr3.2:78953379-78953398 | None:intergenic | 40.0% | |
| CAGATACTCTTTATGTGTCC+TGG | + | chr3.2:78951570-78951589 | MS.gene06516:intron | 40.0% | |
| CAGCACAACTCAAAAGGAAA+CGG | + | chr3.2:78952009-78952028 | MS.gene06516:intron | 40.0% | |
| CATAATATCTATGGAGGCCT+GGG | - | chr3.2:78951959-78951978 | None:intergenic | 40.0% | |
| CATCTTAGTGACTTATCTCG+AGG | + | chr3.2:78952149-78952168 | MS.gene06516:intron | 40.0% | |
| CCATCTAAAAGTCAAAGTCC+AGG | - | chr3.2:78952661-78952680 | None:intergenic | 40.0% | |
| CCGATGACATCAATGATACA+TGG | + | chr3.2:78952622-78952641 | MS.gene06516:CDS | 40.0% | |
| CTTGGCATATATTCTGATGC+TGG | + | chr3.2:78951359-78951378 | MS.gene06516:CDS | 40.0% | |
| GACATGTAAAAGCCCTAAGT+AGG | - | chr3.2:78951468-78951487 | None:intergenic | 40.0% | |
| GATATGTTGGAAGTTGGCAA+TGG | + | chr3.2:78952953-78952972 | MS.gene06516:CDS | 40.0% | |
| GATCGTAAGACATTTCCATC+AGG | + | chr3.2:78951293-78951312 | MS.gene06516:CDS | 40.0% | |
| GATGGAAATGTCTTACGATC+AGG | - | chr3.2:78951293-78951312 | None:intergenic | 40.0% | |
| GCCAAACGATTTCCTGATAA+AGG | - | chr3.2:78953697-78953716 | None:intergenic | 40.0% | |
| TAGAAGCAGCACAACTCAAA+AGG | + | chr3.2:78952003-78952022 | MS.gene06516:intron | 40.0% | |
| TCCTCATCCAATTGAAAGTC+AGG | - | chr3.2:78950919-78950938 | None:intergenic | 40.0% | |
| TCCTGACTTTCAATTGGATG+AGG | + | chr3.2:78950915-78950934 | MS.gene06516:intron | 40.0% | |
| TGCGACTATAACAGCATCAT+GGG | + | chr3.2:78953747-78953766 | MS.gene06516:CDS | 40.0% | |
| TGCTGATCTTAATGACCGAT+GGG | + | chr3.2:78952807-78952826 | MS.gene06516:CDS | 40.0% | |
| TGGAATAGATGGTTGTAGTC+AGG | + | chr3.2:78953400-78953419 | MS.gene06516:CDS | 40.0% | |
| TTGCCAACTTCCAACATATC+GGG | - | chr3.2:78952953-78952972 | None:intergenic | 40.0% | |
| TTGCGACTATAACAGCATCA+TGG | + | chr3.2:78953746-78953765 | MS.gene06516:CDS | 40.0% | |
| TTGCTGATCTTAATGACCGA+TGG | + | chr3.2:78952806-78952825 | MS.gene06516:CDS | 40.0% | |
| ! | AATCTGCATCACCATTTTCG+TGG | - | chr3.2:78951513-78951532 | None:intergenic | 40.0% |
| ! | CTTGGAACTTCACACTTTTG+CGG | + | chr3.2:78951930-78951949 | MS.gene06516:intron | 40.0% |
| ! | GCGTCTACGCGATAAATTTT+GGG | + | chr3.2:78953449-78953468 | MS.gene06516:intron | 40.0% |
| ! | TGCGTCTACGCGATAAATTT+TGG | + | chr3.2:78953448-78953467 | MS.gene06516:intron | 40.0% |
| ! | TTTACGACCAGTGTCATTGA+GGG | - | chr3.2:78952439-78952458 | None:intergenic | 40.0% |
| !! | CCTGGACTTTGACTTTTAGA+TGG | + | chr3.2:78952658-78952677 | MS.gene06516:intron | 40.0% |
| !! | CGTCAATATAGGTACTGATC+TGG | + | chr3.2:78950682-78950701 | MS.gene06516:intron | 40.0% |
| !! | GTTCAAGTTGCTGGAATAGA+TGG | + | chr3.2:78953389-78953408 | MS.gene06516:CDS | 40.0% |
| !! | TTTTACGACCAGTGTCATTG+AGG | - | chr3.2:78952440-78952459 | None:intergenic | 40.0% |
| ACTTTATGCATCCGATGTGC+TGG | + | chr3.2:78951067-78951086 | MS.gene06516:intron | 45.0% | |
| AGTTGGGCAAAGATCCAGTT+TGG | - | chr3.2:78953601-78953620 | None:intergenic | 45.0% | |
| ATCACGCATAGGTGGATATC+TGG | - | chr3.2:78952415-78952434 | None:intergenic | 45.0% | |
| ATCGTTTGGCTGTTGCTCTT+TGG | + | chr3.2:78953707-78953726 | MS.gene06516:CDS | 45.0% | |
| ATGTGTCCTGGACTTTGTAG+AGG | + | chr3.2:78951582-78951601 | MS.gene06516:intron | 45.0% | |
| ATGTTGGAAGTTGGCAATGG+TGG | + | chr3.2:78952956-78952975 | MS.gene06516:CDS | 45.0% | |
| CATGGGCAAGGTTAAAATCC+TGG | + | chr3.2:78952640-78952659 | MS.gene06516:intron | 45.0% | |
| CGTGGAAAATTGATCCTGGT+CGG | - | chr3.2:78951495-78951514 | None:intergenic | 45.0% | |
| GACGTACACATAACCCAACT+TGG | - | chr3.2:78950666-78950685 | None:intergenic | 45.0% | |
| GATTGTGAACTTGTGTGTGC+AGG | + | chr3.2:78953085-78953104 | MS.gene06516:intron | 45.0% | |
| GCAAGTGCTTTGATTCCTGA+TGG | - | chr3.2:78951311-78951330 | None:intergenic | 45.0% | |
| GCAGAGTAAGATGCTGTAGA+TGG | - | chr3.2:78954072-78954091 | None:intergenic | 45.0% | |
| TACAATGTGCAGACGATTGC+TGG | + | chr3.2:78950772-78950791 | MS.gene06516:intron | 45.0% | |
| TCCCTTCCCATGGACATAAT+CGG | - | chr3.2:78951333-78951352 | None:intergenic | 45.0% | |
| TGCCAACTTCCAACATATCG+GGG | - | chr3.2:78952952-78952971 | None:intergenic | 45.0% | |
| TGGGCATCCCTCCAAAAAAA+CGG | + | chr3.2:78952307-78952326 | MS.gene06516:CDS | 45.0% | |
| TGTTGACGATCCTGCTCTAT+GGG | + | chr3.2:78952569-78952588 | MS.gene06516:CDS | 45.0% | |
| TTAGGACCTCTACAAAGTCC+AGG | - | chr3.2:78951591-78951610 | None:intergenic | 45.0% | |
| TTCTGTAAGGGATTTGTGGC+AGG | + | chr3.2:78953801-78953820 | MS.gene06516:CDS | 45.0% | |
| TTTACATGTCAAGTCCGACC+AGG | + | chr3.2:78951478-78951497 | MS.gene06516:CDS | 45.0% | |
| ! | CACTTGCCGATTATGTCCAT+GGG | + | chr3.2:78951324-78951343 | MS.gene06516:CDS | 45.0% |
| ! | CAGCATATGGGCTTTAGCAA+AGG | + | chr3.2:78953009-78953028 | MS.gene06516:CDS | 45.0% |
| ! | CTGATGCACTGGTATCAACT+GGG | + | chr3.2:78950636-78950655 | MS.gene06516:CDS | 45.0% |
| !! | ACTTATCTCGAGGCGCTTTT+CGG | + | chr3.2:78952159-78952178 | MS.gene06516:intron | 45.0% |
| !! | GGAAGGAAAGTTCAAGTTGC+TGG | + | chr3.2:78953380-78953399 | MS.gene06516:CDS | 45.0% |
| ACCGTGCTCACTTCAGCATA+TGG | + | chr3.2:78952996-78953015 | MS.gene06516:CDS | 50.0% | |
| ACTCACTTGGAGTCCAAGGA+AGG | + | chr3.2:78953363-78953382 | MS.gene06516:CDS | 50.0% | |
| ATACCAGTGCATCAGCTGCA+AGG | - | chr3.2:78950631-78950650 | None:intergenic | 50.0% | |
| ATGTCTTACGATCAGGGACC+AGG | - | chr3.2:78951286-78951305 | None:intergenic | 50.0% | |
| CAATGGTGGCATGACTTACC+AGG | + | chr3.2:78952970-78952989 | MS.gene06516:CDS | 50.0% | |
| CCCATATGCTGAAGTGAGCA+CGG | - | chr3.2:78953000-78953019 | None:intergenic | 50.0% | |
| CCGTGCTCACTTCAGCATAT+GGG | + | chr3.2:78952997-78953016 | MS.gene06516:CDS | 50.0% | |
| GACCCCGATATGTTGGAAGT+TGG | + | chr3.2:78952947-78952966 | MS.gene06516:intron | 50.0% | |
| GCCGATTATGTCCATGGGAA+GGG | + | chr3.2:78951329-78951348 | MS.gene06516:CDS | 50.0% | |
| TATCCTTGCAGCTGATGCAC+TGG | + | chr3.2:78950625-78950644 | MS.gene06516:intron | 50.0% | |
| TGAAGTGAGCACGGTATTCC+TGG | - | chr3.2:78952991-78953010 | None:intergenic | 50.0% | |
| TGTCTCTCTGCAGACTCACT+TGG | + | chr3.2:78953350-78953369 | MS.gene06516:intron | 50.0% | |
| TTCGACAGACCCCGATATGT+TGG | + | chr3.2:78952940-78952959 | MS.gene06516:intron | 50.0% | |
| ! | GAAGCACTTGGGCTTGAATC+TGG | + | chr3.2:78953769-78953788 | MS.gene06516:CDS | 50.0% |
| ! | GCACTTGCCGATTATGTCCA+TGG | + | chr3.2:78951323-78951342 | MS.gene06516:CDS | 50.0% |
| ! | GCTGATGCACTGGTATCAAC+TGG | + | chr3.2:78950635-78950654 | MS.gene06516:intron | 50.0% |
| ! | GTGCAGGCTCCTCTTTTGAT+TGG | + | chr3.2:78953101-78953120 | MS.gene06516:intron | 50.0% |
| ! | GTGTTGACGATCCTGCTCTA+TGG | + | chr3.2:78952568-78952587 | MS.gene06516:CDS | 50.0% |
| ! | TGCACTGGTATCAACTGGGT+TGG | + | chr3.2:78950640-78950659 | MS.gene06516:CDS | 50.0% |
| ! | TGCCGATTATGTCCATGGGA+AGG | + | chr3.2:78951328-78951347 | MS.gene06516:CDS | 50.0% |
| ! | TTTGGAAGTGTAGGGTGACC+TGG | + | chr3.2:78951265-78951284 | MS.gene06516:intron | 50.0% |
| !! | ACAGCATCATGGGAAGCACT+TGG | + | chr3.2:78953757-78953776 | MS.gene06516:CDS | 50.0% |
| !! | ATCAACTGGGTTGGCCAAGT+TGG | + | chr3.2:78950649-78950668 | MS.gene06516:CDS | 50.0% |
| !! | CAGCATCATGGGAAGCACTT+GGG | + | chr3.2:78953758-78953777 | MS.gene06516:CDS | 50.0% |
| !! | CTGGCACGGTTGGTAATAGT+TGG | + | chr3.2:78952592-78952611 | MS.gene06516:CDS | 50.0% |
| !! | TCAACTGGGTTGGCCAAGTT+GGG | + | chr3.2:78950650-78950669 | MS.gene06516:CDS | 50.0% |
| !! | TCATTGAGGGCATCACGCAT+AGG | - | chr3.2:78952426-78952445 | None:intergenic | 50.0% |
| ACCATTCCATCCTCCAGGAC+CGG | - | chr3.2:78952842-78952861 | None:intergenic | 55.0% | |
| CAAGCTTGAGTCCCTTCCCA+TGG | - | chr3.2:78951343-78951362 | None:intergenic | 55.0% | |
| CATGGGAAGGGACTCAAGCT+TGG | + | chr3.2:78951341-78951360 | MS.gene06516:CDS | 55.0% | |
| CGTGATGCCCTCAATGACAC+TGG | + | chr3.2:78952429-78952448 | MS.gene06516:CDS | 55.0% | |
| CTGCTTAGAGCAGTTTCGCG+TGG | - | chr3.2:78953840-78953859 | None:intergenic | 55.0% | |
| GCAGACTCACTTGGAGTCCA+AGG | + | chr3.2:78953359-78953378 | MS.gene06516:intron | 55.0% | |
| GGTGTACCATTCCATCCTCC+AGG | - | chr3.2:78952847-78952866 | None:intergenic | 55.0% | |
| GTCTGGGCAGGTCCTTTATC+AGG | + | chr3.2:78953682-78953701 | MS.gene06516:CDS | 55.0% | |
| ! | TCACACTTTTGCGGTGACCC+AGG | + | chr3.2:78951939-78951958 | MS.gene06516:intron | 55.0% |
| ! | TGCATTTCACGGGTTACGCC+AGG | + | chr3.2:78951648-78951667 | MS.gene06516:intron | 55.0% |
| !! | TTGAGGGCATCACGCATAGG+TGG | - | chr3.2:78952423-78952442 | None:intergenic | 55.0% |
| CATATGCCGGTCCTGGAGGA+TGG | + | chr3.2:78952833-78952852 | MS.gene06516:CDS | 60.0% | |
| GACCGGCATATGCAGCCCAT+CGG | - | chr3.2:78952825-78952844 | None:intergenic | 60.0% | |
| GACGATCCTGCTCTATGGGC+TGG | + | chr3.2:78952573-78952592 | MS.gene06516:CDS | 60.0% | |
| !! | GACCGATGGGCTGCATATGC+CGG | + | chr3.2:78952820-78952839 | MS.gene06516:CDS | 60.0% |
| !! | TCCTGCTCTATGGGCTGGCA+CGG | + | chr3.2:78952578-78952597 | MS.gene06516:CDS | 60.0% |
| ACCGTGCCAGCCCATAGAGC+AGG | - | chr3.2:78952582-78952601 | None:intergenic | 65.0% | |
| GCCGGTCCTGGAGGATGGAA+TGG | + | chr3.2:78952838-78952857 | MS.gene06516:CDS | 65.0% | |
| GCTGCATATGCCGGTCCTGG+AGG | + | chr3.2:78952829-78952848 | MS.gene06516:CDS | 65.0% | |
| TGGGCTGCATATGCCGGTCC+TGG | + | chr3.2:78952826-78952845 | MS.gene06516:CDS | 65.0% | |
| !! | GCTCTATGGGCTGGCACGGT+TGG | + | chr3.2:78952582-78952601 | MS.gene06516:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78950456 | 78954098 | 78950456 | ID=MS.gene06516 |
| chr3.2 | mRNA | 78950456 | 78954098 | 78950456 | ID=MS.gene06516.t1;Parent=MS.gene06516 |
| chr3.2 | exon | 78950456 | 78950558 | 78950456 | ID=MS.gene06516.t1.exon1;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78950456 | 78950558 | 78950456 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78950636 | 78950692 | 78950636 | ID=MS.gene06516.t1.exon2;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78950636 | 78950692 | 78950636 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78950784 | 78950818 | 78950784 | ID=MS.gene06516.t1.exon3;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78950784 | 78950818 | 78950784 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78951278 | 78951381 | 78951278 | ID=MS.gene06516.t1.exon4;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78951278 | 78951381 | 78951278 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78951474 | 78951546 | 78951474 | ID=MS.gene06516.t1.exon5;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78951474 | 78951546 | 78951474 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78952270 | 78952328 | 78952270 | ID=MS.gene06516.t1.exon6;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78952270 | 78952328 | 78952270 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78952416 | 78952481 | 78952416 | ID=MS.gene06516.t1.exon7;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78952416 | 78952481 | 78952416 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78952566 | 78952649 | 78952566 | ID=MS.gene06516.t1.exon8;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78952566 | 78952649 | 78952566 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78952795 | 78952859 | 78952795 | ID=MS.gene06516.t1.exon9;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78952795 | 78952859 | 78952795 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78952948 | 78953030 | 78952948 | ID=MS.gene06516.t1.exon10;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78952948 | 78953030 | 78952948 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78953107 | 78953197 | 78953107 | ID=MS.gene06516.t1.exon11;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78953107 | 78953197 | 78953107 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78953363 | 78953421 | 78953363 | ID=MS.gene06516.t1.exon12;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78953363 | 78953421 | 78953363 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78953682 | 78953822 | 78953682 | ID=MS.gene06516.t1.exon13;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78953682 | 78953822 | 78953682 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| chr3.2 | exon | 78953988 | 78954098 | 78953988 | ID=MS.gene06516.t1.exon14;Parent=MS.gene06516.t1 |
| chr3.2 | CDS | 78953988 | 78954098 | 78953988 | ID=cds.MS.gene06516.t1;Parent=MS.gene06516.t1 |
| Gene Sequence |
| Protein sequence |
