Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006753.t1 | XP_003607683.1 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 1.20E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006753.t1 | Q5ZI57 | 59.4 | 165 | 67 | 0 | 17 | 181 | 12 | 176 | 3.4e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006753.t1 | B7FMN3 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 8.4e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21679 | MS.gene006753 | PPI |
| MS.gene92142 | MS.gene006753 | PPI |
| MS.gene006753 | MS.gene015741 | PPI |
| MS.gene006753 | MS.gene79721 | PPI |
| MS.gene006753 | MS.gene21951 | PPI |
| MS.gene006753 | MS.gene59609 | PPI |
| MS.gene006753 | MS.gene05927 | PPI |
| MS.gene006753 | MS.gene049131 | PPI |
| MS.gene006753 | MS.gene98171 | PPI |
| MS.gene006753 | MS.gene024701 | PPI |
| MS.gene006753 | MS.gene22289 | PPI |
| MS.gene006753 | MS.gene04771 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006753.t1 | MTR_4g081170 | 99.462 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 2.64e-136 | 378 |
| MS.gene006753.t1 | MTR_8g027700 | 93.548 | 186 | 12 | 0 | 1 | 186 | 1 | 186 | 9.95e-130 | 362 |
| MS.gene006753.t1 | MTR_8g027700 | 92.593 | 135 | 10 | 0 | 52 | 186 | 1 | 135 | 1.60e-91 | 263 |
| MS.gene006753.t1 | MTR_4g027400 | 82.979 | 47 | 8 | 0 | 1 | 47 | 1 | 47 | 8.62e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006753.t1 | AT5G54750 | 87.634 | 186 | 23 | 0 | 1 | 186 | 1 | 186 | 8.37e-122 | 342 |
| MS.gene006753.t1 | AT5G54750 | 81.910 | 199 | 23 | 1 | 1 | 186 | 1 | 199 | 6.78e-118 | 332 |
Find 32 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTACTTGTAGTATTATTT+TGG | 0.173251 | 4.1:-25677210 | MS.gene006753:CDS |
| TCCTTATATGGATACTCTTC+TGG | 0.287013 | 4.1:+25676479 | None:intergenic |
| TATTACTCATCATCCTTATA+TGG | 0.314204 | 4.1:+25676467 | None:intergenic |
| ATAGAAGCTTACCATATCTA+AGG | 0.368967 | 4.1:+25677097 | None:intergenic |
| TCCAGAAGAGTATCCATATA+AGG | 0.373933 | 4.1:-25676480 | MS.gene006753:CDS |
| TTACCGCATCCGTGACCAAT+TGG | 0.424789 | 4.1:-25677244 | MS.gene006753:CDS |
| TCGCCGGTTCGAGGAGCAAC+AGG | 0.444238 | 4.1:+25679311 | None:intergenic |
| TATAGACCTTGATAGTTGTC+AGG | 0.479131 | 4.1:+25677155 | None:intergenic |
| CAATGAAGGCTGAGGTCACT+TGG | 0.479280 | 4.1:-25676565 | MS.gene006753:CDS |
| ATATTAAGCGGAGTCATTAG+AGG | 0.486373 | 4.1:-25677122 | MS.gene006753:CDS |
| GCTCCTGTTGCTCCTCGAAC+CGG | 0.487837 | 4.1:-25679314 | MS.gene006753:CDS |
| CATTAGAGGAGCCTTAGATA+TGG | 0.489659 | 4.1:-25677108 | MS.gene006753:intron |
| ATCCCAATTGGTCACGGATG+CGG | 0.496672 | 4.1:+25677241 | None:intergenic |
| TACCGCATCCGTGACCAATT+GGG | 0.499246 | 4.1:-25677243 | MS.gene006753:CDS |
| TGGCTAAATCTAATGTCTCA+AGG | 0.508999 | 4.1:-25679036 | MS.gene006753:CDS |
| AGTCCCTTCAGCATCCCAAT+TGG | 0.532365 | 4.1:+25677229 | None:intergenic |
| GAGCTCTTTACTCTCACATA+TGG | 0.537014 | 4.1:-25679254 | MS.gene006753:CDS |
| GAGCTTCCTGACAACTATCA+AGG | 0.547242 | 4.1:-25677161 | MS.gene006753:CDS |
| TGGCTACGAGATGTGCTTCG+AGG | 0.557803 | 4.1:-25676545 | MS.gene006753:CDS |
| TCATACTCAGGTATCAATGA+AGG | 0.563147 | 4.1:-25676579 | MS.gene006753:intron |
| TACTACTGCAACATATTAAG+CGG | 0.569518 | 4.1:-25677134 | MS.gene006753:CDS |
| GTGACCAATTGGGATGCTGA+AGG | 0.590525 | 4.1:-25677233 | MS.gene006753:CDS |
| TTCAGCATCCCAATTGGTCA+CGG | 0.591444 | 4.1:+25677235 | None:intergenic |
| GACTGCTGATGTCATTGCAA+AGG | 0.591701 | 4.1:-25678996 | MS.gene006753:intron |
| TGACCAATTGGGATGCTGAA+GGG | 0.593955 | 4.1:-25677232 | MS.gene006753:CDS |
| AGCTCAACAAAGTCTACCAA+AGG | 0.594508 | 4.1:+25677179 | None:intergenic |
| GTTAGCAAATATCGCATCGC+CGG | 0.596718 | 4.1:+25679295 | None:intergenic |
| TAACATCGAACGCGTTAATG+CGG | 0.607582 | 4.1:-25679276 | MS.gene006753:CDS |
| TCAGGTATCAATGAAGGCTG+AGG | 0.608851 | 4.1:-25676573 | MS.gene006753:intron |
| AATATCGCATCGCCGGTTCG+AGG | 0.625890 | 4.1:+25679302 | None:intergenic |
| ATTGCTTACAGATCTCGAAG+AGG | 0.675299 | 4.1:-25679216 | MS.gene006753:CDS |
| TCACGGATGCGGTAACACCG+AGG | 0.770702 | 4.1:+25677252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCAGTATCTAATAAT+TGG | - | chr4.1:25678317-25678336 | MS.gene006753:intron | 15.0% |
| !! | TTTATAATATTATATCGTCT+TGG | - | chr4.1:25678201-25678220 | MS.gene006753:intron | 15.0% |
| !! | AATTAACACATACGAATTTA+GGG | + | chr4.1:25678245-25678264 | None:intergenic | 20.0% |
| !! | ATGATAAAAAGCTATCATTA+TGG | - | chr4.1:25677998-25678017 | MS.gene006753:intron | 20.0% |
| !! | TAAGAGGAAAATAATGAAAA+TGG | + | chr4.1:25677770-25677789 | None:intergenic | 20.0% |
| !! | TAATTAACACATACGAATTT+AGG | + | chr4.1:25678246-25678265 | None:intergenic | 20.0% |
| !! | TATATCTTTATTAGAAGACT+CGG | + | chr4.1:25677053-25677072 | None:intergenic | 20.0% |
| !! | TGAAAATCCATAATGTAATT+GGG | - | chr4.1:25679030-25679049 | MS.gene006753:CDS | 20.0% |
| !! | TTGAAAATCCATAATGTAAT+TGG | - | chr4.1:25679029-25679048 | MS.gene006753:CDS | 20.0% |
| !!! | AAACCAGAATAATTTAGTTT+CGG | + | chr4.1:25677937-25677956 | None:intergenic | 20.0% |
| ! | AATGAAAATGGCAATATATG+TGG | + | chr4.1:25677758-25677777 | None:intergenic | 25.0% |
| ! | ATATCTTTATTAGAAGACTC+GGG | + | chr4.1:25677052-25677071 | None:intergenic | 25.0% |
| ! | ATGATGTATGTATACATAAG+AGG | - | chr4.1:25676919-25676938 | MS.gene006753:intron | 25.0% |
| ! | CGTAAAAAAACAAAAAATGC+TGG | + | chr4.1:25678415-25678434 | None:intergenic | 25.0% |
| ! | CTCAATTTCTGTTTGTATTT+CGG | - | chr4.1:25676639-25676658 | MS.gene006753:intron | 25.0% |
| ! | CTTTCATTAAGAATGATGTT+TGG | - | chr4.1:25678113-25678132 | MS.gene006753:intron | 25.0% |
| ! | TCAAACATATATAAAGCAGA+AGG | - | chr4.1:25678454-25678473 | MS.gene006753:intron | 25.0% |
| ! | TCTTTAAATCAAGACATAGA+AGG | - | chr4.1:25677288-25677307 | MS.gene006753:intron | 25.0% |
| ! | TGATTAAAAAACTGGTGAAT+GGG | + | chr4.1:25678752-25678771 | None:intergenic | 25.0% |
| ! | TGCTTTCAGAAAATAAAGAA+CGG | + | chr4.1:25678960-25678979 | None:intergenic | 25.0% |
| ! | TTGGTATGATATTTACAAGA+CGG | - | chr4.1:25678361-25678380 | MS.gene006753:intron | 25.0% |
| !! | AACCAGAATAATTTAGTTTC+GGG | + | chr4.1:25677936-25677955 | None:intergenic | 25.0% |
| !! | AGATTACTCATGATTTTGTA+TGG | - | chr4.1:25678860-25678879 | MS.gene006753:intron | 25.0% |
| !! | GACTACTTGTAGTATTATTT+TGG | - | chr4.1:25678576-25678595 | MS.gene006753:intron | 25.0% |
| !! | TTGTTTTCCCAATTACATTA+TGG | + | chr4.1:25679040-25679059 | None:intergenic | 25.0% |
| !!! | ATATCTAAGTCGCATTTTTT+TGG | + | chr4.1:25678057-25678076 | None:intergenic | 25.0% |
| !!! | ATCATAGTTATTTTTCCTAG+AGG | - | chr4.1:25679072-25679091 | MS.gene006753:CDS | 25.0% |
| !!! | ATTTTCAGGGGTTATAATAT+TGG | - | chr4.1:25676704-25676723 | MS.gene006753:intron | 25.0% |
| !!! | TACTTGTAGTATTATTTTGG+AGG | - | chr4.1:25678579-25678598 | MS.gene006753:intron | 25.0% |
| AATTGTTCGTTTATACAGGT+TGG | - | chr4.1:25678499-25678518 | MS.gene006753:intron | 30.0% | |
| ACATCTTTCATTGCTAAGAA+AGG | + | chr4.1:25678998-25679017 | None:intergenic | 30.0% | |
| AGAAGAGCTGATTAAAAAAC+TGG | + | chr4.1:25678760-25678779 | None:intergenic | 30.0% | |
| AGATGAACAAGTATGTTTGT+AGG | - | chr4.1:25677652-25677671 | MS.gene006753:intron | 30.0% | |
| AGATTAGTAGAATCAATGGA+TGG | - | chr4.1:25677253-25677272 | MS.gene006753:CDS | 30.0% | |
| ATAGAAGCTTACCATATCTA+AGG | + | chr4.1:25678692-25678711 | None:intergenic | 30.0% | |
| ATCTTTCATTGCTAAGAAAG+GGG | + | chr4.1:25678996-25679015 | None:intergenic | 30.0% | |
| ATGTTTACTGAGCATTATGT+TGG | + | chr4.1:25677964-25677983 | None:intergenic | 30.0% | |
| ATTAGACTAAGATGCAATAG+AGG | - | chr4.1:25677724-25677743 | MS.gene006753:intron | 30.0% | |
| ATTCTTCTACATTCATACTC+AGG | - | chr4.1:25679195-25679214 | MS.gene006753:CDS | 30.0% | |
| CAAAAGCTTAGTAAGTTAGT+TGG | - | chr4.1:25676884-25676903 | MS.gene006753:intron | 30.0% | |
| CATACTTGTTCATCTGAATT+TGG | + | chr4.1:25677647-25677666 | None:intergenic | 30.0% | |
| CATCTTTCATTGCTAAGAAA+GGG | + | chr4.1:25678997-25679016 | None:intergenic | 30.0% | |
| CCAAAAACTCATCAATCAAA+CGG | + | chr4.1:25676733-25676752 | None:intergenic | 30.0% | |
| CCTGTATAAACGAACAATTA+AGG | + | chr4.1:25678498-25678517 | None:intergenic | 30.0% | |
| CCTTAATTGTTCGTTTATAC+AGG | - | chr4.1:25678495-25678514 | MS.gene006753:intron | 30.0% | |
| CTGATTAAAAAACTGGTGAA+TGG | + | chr4.1:25678753-25678772 | None:intergenic | 30.0% | |
| CTGCAATCTATCTGTAATAT+GGG | - | chr4.1:25677182-25677201 | MS.gene006753:CDS | 30.0% | |
| GTATGTATACATAAGAGGAA+GGG | - | chr4.1:25676924-25676943 | MS.gene006753:intron | 30.0% | |
| TACTACTGCAACATATTAAG+CGG | - | chr4.1:25678652-25678671 | MS.gene006753:intron | 30.0% | |
| TATCTTTATTAGAAGACTCG+GGG | + | chr4.1:25677051-25677070 | None:intergenic | 30.0% | |
| TCTGCAATCTATCTGTAATA+TGG | - | chr4.1:25677181-25677200 | MS.gene006753:CDS | 30.0% | |
| TGAAAAGTGAAGACATACTT+TGG | + | chr4.1:25678172-25678191 | None:intergenic | 30.0% | |
| TGCTTTGCATTCATTCAAAT+CGG | - | chr4.1:25677802-25677821 | MS.gene006753:intron | 30.0% | |
| TGGTAGATTAGTAGAATCAA+TGG | - | chr4.1:25677249-25677268 | MS.gene006753:CDS | 30.0% | |
| TGTATGTATACATAAGAGGA+AGG | - | chr4.1:25676923-25676942 | MS.gene006753:intron | 30.0% | |
| TGTTTACTGAGCATTATGTT+GGG | + | chr4.1:25677963-25677982 | None:intergenic | 30.0% | |
| TTAGACTAAGATGCAATAGA+GGG | - | chr4.1:25677725-25677744 | MS.gene006753:intron | 30.0% | |
| TTATCAATTGAGAGAGTGAA+GGG | - | chr4.1:25677124-25677143 | MS.gene006753:CDS | 30.0% | |
| TTCCCGAAACTAAATTATTC+TGG | - | chr4.1:25677931-25677950 | MS.gene006753:intron | 30.0% | |
| TTGTATGGTTTATCGTTGTT+TGG | - | chr4.1:25678875-25678894 | MS.gene006753:intron | 30.0% | |
| ! | AATTTTCCTAATGACAGGAT+CGG | + | chr4.1:25677025-25677044 | None:intergenic | 30.0% |
| ! | TACTAAGCTTTTGTTCACAA+TGG | + | chr4.1:25676877-25676896 | None:intergenic | 30.0% |
| !! | TATTTTGGAGGATAATCCTT+TGG | - | chr4.1:25678591-25678610 | MS.gene006753:intron | 30.0% |
| !!! | GTTGGTTTTAAAATGTTCCT+CGG | - | chr4.1:25678517-25678536 | MS.gene006753:intron | 30.0% |
| AAAATGGCAATATATGTGGC+AGG | + | chr4.1:25677754-25677773 | None:intergenic | 35.0% | |
| AACAATGATGAAATGCAGTC+TGG | - | chr4.1:25677865-25677884 | MS.gene006753:intron | 35.0% | |
| ACACTCAAATTTCAGAAGAC+TGG | + | chr4.1:25678823-25678842 | None:intergenic | 35.0% | |
| ACTTTAGACAATGGGAATCA+TGG | - | chr4.1:25677414-25677433 | MS.gene006753:intron | 35.0% | |
| AGCAACTACAAACTCATAAG+AGG | + | chr4.1:25677786-25677805 | None:intergenic | 35.0% | |
| ATATTAAGCGGAGTCATTAG+AGG | - | chr4.1:25678664-25678683 | MS.gene006753:intron | 35.0% | |
| ATCAATGGCGATGATGATAA+TGG | - | chr4.1:25677225-25677244 | MS.gene006753:CDS | 35.0% | |
| CCGAACAGTAAAATTCAGAT+CGG | + | chr4.1:25676679-25676698 | None:intergenic | 35.0% | |
| CTTATCAATTGAGAGAGTGA+AGG | - | chr4.1:25677123-25677142 | MS.gene006753:CDS | 35.0% | |
| CTTTAGACAATGGGAATCAT+GGG | - | chr4.1:25677415-25677434 | MS.gene006753:intron | 35.0% | |
| GAAGAAGGACTTTAGACAAT+GGG | - | chr4.1:25677406-25677425 | MS.gene006753:intron | 35.0% | |
| GCTTAGTAAGTTAGTTGGTT+AGG | - | chr4.1:25676889-25676908 | MS.gene006753:intron | 35.0% | |
| GGTTTATCGTTGTTTGGAAA+GGG | - | chr4.1:25678881-25678900 | MS.gene006753:intron | 35.0% | |
| GTAAGTTAGTTGGTTAGGTT+AGG | - | chr4.1:25676894-25676913 | MS.gene006753:intron | 35.0% | |
| TAGACTAAGATGCAATAGAG+GGG | - | chr4.1:25677726-25677745 | MS.gene006753:intron | 35.0% | |
| TCATACTCAGGTATCAATGA+AGG | - | chr4.1:25679207-25679226 | MS.gene006753:CDS | 35.0% | |
| TCCTTATATGGATACTCTTC+TGG | + | chr4.1:25679310-25679329 | None:intergenic | 35.0% | |
| TGAAGAAGGACTTTAGACAA+TGG | - | chr4.1:25677405-25677424 | MS.gene006753:intron | 35.0% | |
| TGATATTCACCTTCAGAACA+TGG | - | chr4.1:25677473-25677492 | MS.gene006753:intron | 35.0% | |
| TGGCTAAATCTAATGTCTCA+AGG | - | chr4.1:25676750-25676769 | MS.gene006753:intron | 35.0% | |
| TGGTTTATCGTTGTTTGGAA+AGG | - | chr4.1:25678880-25678899 | MS.gene006753:intron | 35.0% | |
| TTCTCATCGAAATGAGTGAT+AGG | - | chr4.1:25677075-25677094 | MS.gene006753:intron | 35.0% | |
| ! | CCGATCTGAATTTTACTGTT+CGG | - | chr4.1:25676676-25676695 | MS.gene006753:intron | 35.0% |
| ! | CCGTTTGATTGATGAGTTTT+TGG | - | chr4.1:25676730-25676749 | MS.gene006753:intron | 35.0% |
| ! | GGAAGAATTTTCCTAATGAC+AGG | + | chr4.1:25677030-25677049 | None:intergenic | 35.0% |
| ! | GGGAAATTTTCCTTAGATCT+AGG | - | chr4.1:25677202-25677221 | MS.gene006753:CDS | 35.0% |
| ! | TATAGACCTTGATAGTTGTC+AGG | + | chr4.1:25678634-25678653 | None:intergenic | 35.0% |
| ! | TTCCTTAGATCTAGGATCAA+TGG | - | chr4.1:25677210-25677229 | MS.gene006753:CDS | 35.0% |
| !! | ACTGTTCGGTTTGTATTTTC+AGG | - | chr4.1:25676690-25676709 | MS.gene006753:intron | 35.0% |
| !! | CTGTTCGGTTTGTATTTTCA+GGG | - | chr4.1:25676691-25676710 | MS.gene006753:intron | 35.0% |
| !! | CTTTTGTTTCACGTTGTAGT+TGG | - | chr4.1:25678277-25678296 | MS.gene006753:intron | 35.0% |
| !! | TCCAGAAGAGTATCCATATA+AGG | - | chr4.1:25679306-25679325 | MS.gene006753:CDS | 35.0% |
| !! | TGTTCGGTTTGTATTTTCAG+GGG | - | chr4.1:25676692-25676711 | MS.gene006753:intron | 35.0% |
| !!! | CTAAGTCGCATTTTTTTGGA+CGG | + | chr4.1:25678053-25678072 | None:intergenic | 35.0% |
| AAAACCAAGTAGCAGCACAT+AGG | + | chr4.1:25678388-25678407 | None:intergenic | 40.0% | |
| AAGTTGAAAACAAACCGACC+AGG | + | chr4.1:25677443-25677462 | None:intergenic | 40.0% | |
| AATGAGTGATAGGTTGCCTT+TGG | - | chr4.1:25677085-25677104 | MS.gene006753:intron | 40.0% | |
| ACATAAGAGGAAGGGATTAG+AGG | - | chr4.1:25676932-25676951 | MS.gene006753:intron | 40.0% | |
| ACATGACATGCAATGTGGAT+CGG | - | chr4.1:25679103-25679122 | MS.gene006753:intron | 40.0% | |
| AGCTCAACAAAGTCTACCAA+AGG | + | chr4.1:25678610-25678629 | None:intergenic | 40.0% | |
| ATGAGTGATAGGTTGCCTTT+GGG | - | chr4.1:25677086-25677105 | MS.gene006753:intron | 40.0% | |
| ATGTGACATGACATGCAATG+TGG | - | chr4.1:25679098-25679117 | MS.gene006753:intron | 40.0% | |
| ATTGCTTACAGATCTCGAAG+AGG | - | chr4.1:25676570-25676589 | MS.gene006753:CDS | 40.0% | |
| CAGAACATGGTGAATGTTCA+AGG | - | chr4.1:25677486-25677505 | MS.gene006753:intron | 40.0% | |
| CATAAGAGGAAGGGATTAGA+GGG | - | chr4.1:25676933-25676952 | MS.gene006753:intron | 40.0% | |
| CATTAGAGGAGCCTTAGATA+TGG | - | chr4.1:25678678-25678697 | MS.gene006753:intron | 40.0% | |
| CCTAGCCTAACAAACTATCA+GGG | + | chr4.1:25677514-25677533 | None:intergenic | 40.0% | |
| CCTTCTCTATTGAGAGAGTT+GGG | - | chr4.1:25677576-25677595 | MS.gene006753:intron | 40.0% | |
| CGACACTATAAATTGGCACA+AGG | + | chr4.1:25676964-25676983 | None:intergenic | 40.0% | |
| GAACATTCACCATGTTCTGA+AGG | + | chr4.1:25677485-25677504 | None:intergenic | 40.0% | |
| GAAGACATACTTTGGACTTG+TGG | + | chr4.1:25678164-25678183 | None:intergenic | 40.0% | |
| GACTGTGAACACATTCTGAT+TGG | - | chr4.1:25678342-25678361 | MS.gene006753:intron | 40.0% | |
| GACTTGTGGCAAGATTAGAA+AGG | + | chr4.1:25678150-25678169 | None:intergenic | 40.0% | |
| GAGCTCTTTACTCTCACATA+TGG | - | chr4.1:25676532-25676551 | MS.gene006753:CDS | 40.0% | |
| TAACATCGAACGCGTTAATG+CGG | - | chr4.1:25676510-25676529 | MS.gene006753:CDS | 40.0% | |
| TCAAGACATAGAAGGAGATG+AGG | - | chr4.1:25677296-25677315 | MS.gene006753:intron | 40.0% | |
| TCCTTCTCTATTGAGAGAGT+TGG | - | chr4.1:25677575-25677594 | MS.gene006753:intron | 40.0% | |
| TCGGCAAAATGTGTTTGACT+TGG | - | chr4.1:25677821-25677840 | MS.gene006753:intron | 40.0% | |
| TGTGATGTGTATCAGTGAGA+GGG | - | chr4.1:25677535-25677554 | MS.gene006753:intron | 40.0% | |
| TGTGCCAATTTATAGTGTCG+TGG | - | chr4.1:25676964-25676983 | MS.gene006753:intron | 40.0% | |
| TTTCATTGCTAAGAAAGGGG+AGG | + | chr4.1:25678993-25679012 | None:intergenic | 40.0% | |
| ! | CGGCAAAATGTGTTTGACTT+GGG | - | chr4.1:25677822-25677841 | MS.gene006753:intron | 40.0% |
| ! | GTCATGTCACATTTTCCTCT+AGG | + | chr4.1:25679090-25679109 | None:intergenic | 40.0% |
| !! | AGGTACCCTGATAGTTTGTT+AGG | - | chr4.1:25677506-25677525 | MS.gene006753:intron | 40.0% |
| !! | ATGGCGATGATGATAATGGA+TGG | - | chr4.1:25677229-25677248 | MS.gene006753:CDS | 40.0% |
| !! | CAAAATGTGTTTGACTTGGG+GGG | - | chr4.1:25677825-25677844 | MS.gene006753:intron | 40.0% |
| !! | GCAAAATGTGTTTGACTTGG+GGG | - | chr4.1:25677824-25677843 | MS.gene006753:intron | 40.0% |
| !! | GGCAAAATGTGTTTGACTTG+GGG | - | chr4.1:25677823-25677842 | MS.gene006753:intron | 40.0% |
| AGATAAGCCACTGCAGAGTT+TGG | - | chr4.1:25677335-25677354 | MS.gene006753:intron | 45.0% | |
| ATGTGTATCAGTGAGAGGGA+GGG | - | chr4.1:25677539-25677558 | MS.gene006753:intron | 45.0% | |
| CATGACATGCAATGTGGATC+GGG | - | chr4.1:25679104-25679123 | MS.gene006753:intron | 45.0% | |
| CCCAACTCTCTCAATAGAGA+AGG | + | chr4.1:25677579-25677598 | None:intergenic | 45.0% | |
| CGCCATTGATCCTAGATCTA+AGG | + | chr4.1:25677215-25677234 | None:intergenic | 45.0% | |
| CTACATCTCCACATGCCTAA+AGG | + | chr4.1:25677603-25677622 | None:intergenic | 45.0% | |
| CTGTGATGTGTATCAGTGAG+AGG | - | chr4.1:25677534-25677553 | MS.gene006753:intron | 45.0% | |
| GACTGCTGATGTCATTGCAA+AGG | - | chr4.1:25676790-25676809 | MS.gene006753:intron | 45.0% | |
| GAGCTTCCTGACAACTATCA+AGG | - | chr4.1:25678625-25678644 | MS.gene006753:intron | 45.0% | |
| GAGGCCACGACACTATAAAT+TGG | + | chr4.1:25676971-25676990 | None:intergenic | 45.0% | |
| GATGCTTCTCTCTAACCCAA+AGG | + | chr4.1:25677104-25677123 | None:intergenic | 45.0% | |
| GCCTAGCCTAACAAACTATC+AGG | + | chr4.1:25677515-25677534 | None:intergenic | 45.0% | |
| GTTAGCAAATATCGCATCGC+CGG | + | chr4.1:25676494-25676513 | None:intergenic | 45.0% | |
| TCAGGTATCAATGAAGGCTG+AGG | - | chr4.1:25679213-25679232 | MS.gene006753:CDS | 45.0% | |
| TCGTCTTGGCTCATTGTTGT+TGG | - | chr4.1:25678215-25678234 | MS.gene006753:intron | 45.0% | |
| TGACCAATTGGGATGCTGAA+GGG | - | chr4.1:25678554-25678573 | MS.gene006753:intron | 45.0% | |
| TGAGAGAGTGAAGGGTCTTT+GGG | - | chr4.1:25677132-25677151 | MS.gene006753:CDS | 45.0% | |
| TTCAGCATCCCAATTGGTCA+CGG | + | chr4.1:25678554-25678573 | None:intergenic | 45.0% | |
| TTGAGAGAGTGAAGGGTCTT+TGG | - | chr4.1:25677131-25677150 | MS.gene006753:CDS | 45.0% | |
| TTGAGAGAGTTGGGACCTTT+AGG | - | chr4.1:25677585-25677604 | MS.gene006753:intron | 45.0% | |
| !! | CCCTGATAGTTTGTTAGGCT+AGG | - | chr4.1:25677511-25677530 | MS.gene006753:intron | 45.0% |
| AGTCCCTTCAGCATCCCAAT+TGG | + | chr4.1:25678560-25678579 | None:intergenic | 50.0% | |
| AGTGAGAGGGAGGGATTAGA+AGG | - | chr4.1:25677548-25677567 | MS.gene006753:intron | 50.0% | |
| AGTTGGGACCTTTAGGCATG+TGG | - | chr4.1:25677592-25677611 | MS.gene006753:intron | 50.0% | |
| ATCCCAATTGGTCACGGATG+CGG | + | chr4.1:25678548-25678567 | None:intergenic | 50.0% | |
| ATCGGGAGACCCTTGAAGTT+TGG | - | chr4.1:25676996-25677015 | MS.gene006753:intron | 50.0% | |
| CAATGAAGGCTGAGGTCACT+TGG | - | chr4.1:25679221-25679240 | MS.gene006753:CDS | 50.0% | |
| CAATGGGAATCATGGGATCC+TGG | - | chr4.1:25677422-25677441 | MS.gene006753:intron | 50.0% | |
| GATCGGTCCCCAAACTTCAA+GGG | + | chr4.1:25677008-25677027 | None:intergenic | 50.0% | |
| GATGTGTATCAGTGAGAGGG+AGG | - | chr4.1:25677538-25677557 | MS.gene006753:intron | 50.0% | |
| GTGACCAATTGGGATGCTGA+AGG | - | chr4.1:25678553-25678572 | MS.gene006753:intron | 50.0% | |
| TACCGCATCCGTGACCAATT+GGG | - | chr4.1:25678543-25678562 | MS.gene006753:intron | 50.0% | |
| TCCTTCTTCACCTTCTCCAG+CGG | + | chr4.1:25677395-25677414 | None:intergenic | 50.0% | |
| TCGGGAGACCCTTGAAGTTT+GGG | - | chr4.1:25676997-25677016 | MS.gene006753:intron | 50.0% | |
| TGCAGAGTTTGGCAGCAGAA+GGG | - | chr4.1:25677346-25677365 | MS.gene006753:intron | 50.0% | |
| TTACCGCATCCGTGACCAAT+TGG | - | chr4.1:25678542-25678561 | MS.gene006753:intron | 50.0% | |
| AAGGGTCTCCCGATTCACAG+AGG | + | chr4.1:25676990-25677009 | None:intergenic | 55.0% | |
| ACCGCTGGAGAAGGTGAAGA+AGG | - | chr4.1:25677391-25677410 | MS.gene006753:intron | 55.0% | |
| CGGGAGACCCTTGAAGTTTG+GGG | - | chr4.1:25676998-25677017 | MS.gene006753:intron | 55.0% | |
| CTGCAGAGTTTGGCAGCAGA+AGG | - | chr4.1:25677345-25677364 | MS.gene006753:intron | 55.0% | |
| GGATCGGTCCCCAAACTTCA+AGG | + | chr4.1:25677009-25677028 | None:intergenic | 55.0% | |
| GGGAATCATGGGATCCTGGT+CGG | - | chr4.1:25677426-25677445 | MS.gene006753:intron | 55.0% | |
| GTGTCGTGGCCTCTGTGAAT+CGG | - | chr4.1:25676978-25676997 | MS.gene006753:intron | 55.0% | |
| TACTCTGCAATCGACACCGC+TGG | - | chr4.1:25677376-25677395 | MS.gene006753:intron | 55.0% | |
| TCTGCTGCCAAACTCTGCAG+TGG | + | chr4.1:25677345-25677364 | None:intergenic | 55.0% | |
| TGGCTACGAGATGTGCTTCG+AGG | - | chr4.1:25679241-25679260 | MS.gene006753:CDS | 55.0% | |
| TGGGGACCGATCCTGTCATT+AGG | - | chr4.1:25677016-25677035 | MS.gene006753:intron | 55.0% | |
| TGTCGTGGCCTCTGTGAATC+GGG | - | chr4.1:25676979-25676998 | MS.gene006753:intron | 55.0% | |
| ! | CGGACCTATGTGCTGCTACT+TGG | - | chr4.1:25678381-25678400 | MS.gene006753:intron | 55.0% |
| !! | AATATCGCATCGCCGGTTCG+AGG | + | chr4.1:25676487-25676506 | None:intergenic | 55.0% |
| GCAATCGACACCGCTGGAGA+AGG | - | chr4.1:25677382-25677401 | MS.gene006753:intron | 60.0% | |
| GCTCCTGTTGCTCCTCGAAC+CGG | - | chr4.1:25676472-25676491 | MS.gene006753:CDS | 60.0% | |
| TCACGGATGCGGTAACACCG+AGG | + | chr4.1:25678537-25678556 | None:intergenic | 60.0% | |
| !! | TCGCCGGTTCGAGGAGCAAC+AGG | + | chr4.1:25676478-25676497 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 25676469 | 25679339 | 25676469 | ID=MS.gene006753 |
| chr4.1 | mRNA | 25676469 | 25679339 | 25676469 | ID=MS.gene006753.t1;Parent=MS.gene006753 |
| chr4.1 | exon | 25679185 | 25679339 | 25679185 | ID=MS.gene006753.t1.exon1;Parent=MS.gene006753.t1 |
| chr4.1 | CDS | 25679185 | 25679339 | 25679185 | ID=cds.MS.gene006753.t1;Parent=MS.gene006753.t1 |
| chr4.1 | exon | 25678997 | 25679096 | 25678997 | ID=MS.gene006753.t1.exon2;Parent=MS.gene006753.t1 |
| chr4.1 | CDS | 25678997 | 25679096 | 25678997 | ID=cds.MS.gene006753.t1;Parent=MS.gene006753.t1 |
| chr4.1 | exon | 25677109 | 25677291 | 25677109 | ID=MS.gene006753.t1.exon3;Parent=MS.gene006753.t1 |
| chr4.1 | CDS | 25677109 | 25677291 | 25677109 | ID=cds.MS.gene006753.t1;Parent=MS.gene006753.t1 |
| chr4.1 | exon | 25676469 | 25676591 | 25676469 | ID=MS.gene006753.t1.exon4;Parent=MS.gene006753.t1 |
| chr4.1 | CDS | 25676469 | 25676591 | 25676469 | ID=cds.MS.gene006753.t1;Parent=MS.gene006753.t1 |
| Gene Sequence |
| Protein sequence |
