Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008043.t1 | XP_003600923.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.30E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008043.t1 | Q8VZB9 | 88.9 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 3.8e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008043.t1 | B7FGL9 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 4.5e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82038 | MS.gene008043 | PPI |
| MS.gene43038 | MS.gene008043 | PPI |
| MS.gene015407 | MS.gene008043 | PPI |
| MS.gene008043 | MS.gene034454 | PPI |
| MS.gene008043 | MS.gene82545 | PPI |
| MS.gene008043 | MS.gene84323 | PPI |
| MS.gene008043 | MS.gene09755 | PPI |
| MS.gene031955 | MS.gene008043 | PPI |
| MS.gene21219 | MS.gene008043 | PPI |
| MS.gene09753 | MS.gene008043 | PPI |
| MS.gene35416 | MS.gene008043 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008043.t1 | MTR_3g070930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 8.64e-159 | 437 |
| MS.gene008043.t1 | MTR_2g086500 | 98.611 | 216 | 3 | 0 | 1 | 216 | 1 | 216 | 1.87e-157 | 434 |
| MS.gene008043.t1 | MTR_5g012930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene008043.t1 | MTR_3g070930 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.81e-90 | 261 |
| MS.gene008043.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.73e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008043.t1 | AT1G08360 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 1.71e-128 | 361 |
| MS.gene008043.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene008043.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene008043.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene008043.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene008043.t1 | AT2G42650 | 24.255 | 235 | 147 | 10 | 1 | 208 | 1 | 231 | 9.73e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 3.3:-61899668 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 3.3:+61899265 | MS.gene008043:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 3.3:+61897128 | MS.gene008043:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 3.3:-61899225 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 3.3:-61897132 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 3.3:-61897221 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+TGG | 0.426202 | 3.3:+61897224 | MS.gene008043:CDS |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 3.3:+61899148 | MS.gene008043:CDS |
| GTATACCTCTTCGACGTGTT+GGG | 0.429152 | 3.3:-61897252 | None:intergenic |
| CTTGTATCTGAAAAGTTCAA+TGG | 0.435518 | 3.3:+61900334 | MS.gene008043:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 3.3:+61899139 | MS.gene008043:intron |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 3.3:+61899735 | MS.gene008043:CDS |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 3.3:+61899134 | MS.gene008043:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 3.3:-61897206 | None:intergenic |
| TGTATACCTCTTCGACGTGT+TGG | 0.483872 | 3.3:-61897253 | None:intergenic |
| TTGTATCTGAAAAGTTCAAT+GGG | 0.491020 | 3.3:+61900335 | MS.gene008043:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 3.3:+61899734 | MS.gene008043:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 3.3:+61899668 | MS.gene008043:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 3.3:+61897073 | MS.gene008043:CDS |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 3.3:-61899276 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 3.3:+61897065 | MS.gene008043:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 3.3:-61897215 | None:intergenic |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 3.3:-61899651 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 3.3:+61899710 | MS.gene008043:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 3.3:+61899722 | MS.gene008043:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 3.3:+61899723 | MS.gene008043:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 3.3:-61899650 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 3.3:+61899663 | MS.gene008043:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 3.3:+61899287 | MS.gene008043:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 3.3:+61899235 | MS.gene008043:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 3.3:-61897195 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 3.3:+61899283 | MS.gene008043:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 3.3:+61899689 | MS.gene008043:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 3.3:+61897043 | MS.gene008043:intron |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 3.3:-61899235 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 3.3:+61899749 | MS.gene008043:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 3.3:-61899277 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 3.3:+61899662 | MS.gene008043:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 3.3:-61899290 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 3.3:+61899683 | MS.gene008043:CDS |
| AGACGCCCAACACGTCGAAG+AGG | 0.667465 | 3.3:+61897247 | MS.gene008043:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 3.3:-61897214 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 3.3:-61900367 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 3.3:-61899275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTGTATATTATTAAA+TGG | + | chr3.3:61898958-61898977 | MS.gene008043:intron | 10.0% |
| !! | AGAATAAAAAAAATATGAGA+TGG | - | chr3.3:61898466-61898485 | None:intergenic | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | - | chr3.3:61897700-61897719 | None:intergenic | 15.0% |
| !! | CAATAAACAAAACATTAAAT+TGG | - | chr3.3:61897312-61897331 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | chr3.3:61898965-61898984 | MS.gene008043:intron | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | + | chr3.3:61897719-61897738 | MS.gene008043:intron | 15.0% |
| !!! | AATTTTTAAACACTGATTTA+CGG | + | chr3.3:61900191-61900210 | MS.gene008043:intron | 15.0% |
| !!! | ATAAGTTTTTACTGTTTTAA+GGG | + | chr3.3:61897530-61897549 | MS.gene008043:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | chr3.3:61899467-61899486 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTTACTGTTTTA+AGG | + | chr3.3:61897529-61897548 | MS.gene008043:intron | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | - | chr3.3:61897641-61897660 | None:intergenic | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | - | chr3.3:61899520-61899539 | None:intergenic | 20.0% |
| !! | AGTGTTTAAAAATTTCAACT+AGG | - | chr3.3:61900185-61900204 | None:intergenic | 20.0% |
| !! | ATGTAATATTCTAATCTCAT+TGG | - | chr3.3:61897668-61897687 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | chr3.3:61899581-61899600 | MS.gene008043:intron | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | chr3.3:61897879-61897898 | None:intergenic | 20.0% |
| !! | GTGTTTAAAAATTTCAACTA+GGG | - | chr3.3:61900184-61900203 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | - | chr3.3:61899544-61899563 | None:intergenic | 20.0% |
| !!! | ATTTTTAAACACTGATTTAC+GGG | + | chr3.3:61900192-61900211 | MS.gene008043:intron | 20.0% |
| !!! | TGTTTTATGAATATTCGATT+AGG | + | chr3.3:61898693-61898712 | MS.gene008043:intron | 20.0% |
| !!! | TTTAGTTTTGCAAATTTTGT+TGG | + | chr3.3:61898797-61898816 | MS.gene008043:intron | 20.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | chr3.3:61900075-61900094 | MS.gene008043:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | chr3.3:61900076-61900095 | MS.gene008043:intron | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | + | chr3.3:61897722-61897741 | MS.gene008043:intron | 25.0% |
| ! | AAACAAACACTCTTTAAGTA+CGG | - | chr3.3:61898203-61898222 | None:intergenic | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | chr3.3:61898325-61898344 | MS.gene008043:intron | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | chr3.3:61897284-61897303 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | - | chr3.3:61899107-61899126 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | chr3.3:61900041-61900060 | None:intergenic | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | chr3.3:61897777-61897796 | MS.gene008043:intron | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | chr3.3:61898132-61898151 | None:intergenic | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | chr3.3:61897872-61897891 | None:intergenic | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | - | chr3.3:61898577-61898596 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | chr3.3:61898145-61898164 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAAAACTAAAC+TGG | - | chr3.3:61898796-61898815 | None:intergenic | 25.0% |
| ! | CGAATATTCATAAAACAGTT+TGG | - | chr3.3:61898690-61898709 | None:intergenic | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+TGG | - | chr3.3:61900236-61900255 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | chr3.3:61899190-61899209 | MS.gene008043:CDS | 25.0% |
| ! | GGAAGTTAAAAACAAAGATA+AGG | - | chr3.3:61898775-61898794 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | chr3.3:61897873-61897892 | None:intergenic | 25.0% |
| ! | TTGTATCTGAAAAGTTCAAT+GGG | + | chr3.3:61900335-61900354 | MS.gene008043:CDS | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | - | chr3.3:61899912-61899931 | None:intergenic | 25.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | chr3.3:61896940-61896959 | None:intergenic | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | chr3.3:61899622-61899641 | MS.gene008043:intron | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | chr3.3:61899183-61899202 | None:intergenic | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | chr3.3:61899328-61899347 | MS.gene008043:intron | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | chr3.3:61899621-61899640 | MS.gene008043:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | chr3.3:61898349-61898368 | MS.gene008043:intron | 25.0% |
| !!! | ACTTAAAGAGTGTTTGTTTT+TGG | + | chr3.3:61898204-61898223 | MS.gene008043:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | chr3.3:61899573-61899592 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | chr3.3:61897923-61897942 | None:intergenic | 25.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | chr3.3:61898423-61898442 | None:intergenic | 30.0% | |
| AAAAACCCAATTCAACAGAA+GGG | - | chr3.3:61898062-61898081 | None:intergenic | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | chr3.3:61899350-61899369 | None:intergenic | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | - | chr3.3:61900027-61900046 | None:intergenic | 30.0% | |
| AAATTGCATCCCTTAACAAA+AGG | - | chr3.3:61897491-61897510 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | - | chr3.3:61900055-61900074 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | - | chr3.3:61898572-61898591 | None:intergenic | 30.0% | |
| ATCACAAGTTCAAATACTCA+TGG | + | chr3.3:61898727-61898746 | MS.gene008043:intron | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | - | chr3.3:61898452-61898471 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | chr3.3:61898133-61898152 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | chr3.3:61897605-61897624 | None:intergenic | 30.0% | |
| CTTGTATCTGAAAAGTTCAA+TGG | + | chr3.3:61900334-61900353 | MS.gene008043:CDS | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | chr3.3:61898498-61898517 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | chr3.3:61898890-61898909 | MS.gene008043:intron | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | chr3.3:61898505-61898524 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | - | chr3.3:61900050-61900069 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | chr3.3:61897605-61897624 | MS.gene008043:intron | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | - | chr3.3:61898891-61898910 | None:intergenic | 30.0% | |
| TTACGCTACATAGATATATC+TGG | + | chr3.3:61897442-61897461 | MS.gene008043:intron | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | chr3.3:61897604-61897623 | None:intergenic | 30.0% | |
| TTGTGCAACGATGAAATAAA+AGG | - | chr3.3:61899861-61899880 | None:intergenic | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | + | chr3.3:61898257-61898276 | MS.gene008043:intron | 30.0% | |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | chr3.3:61897105-61897124 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | chr3.3:61898353-61898372 | MS.gene008043:intron | 30.0% |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | chr3.3:61898338-61898357 | None:intergenic | 30.0% |
| ! | GGAAAGATGAATCGATTTAT+TGG | - | chr3.3:61896919-61896938 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | chr3.3:61897169-61897188 | None:intergenic | 30.0% |
| ! | TTCCACTATCCTTTTGTTAA+GGG | + | chr3.3:61897479-61897498 | MS.gene008043:intron | 30.0% |
| !! | AATGAATTGCCTTGTTTGAA+AGG | + | chr3.3:61899532-61899551 | MS.gene008043:intron | 30.0% |
| !! | TATAACCTACTGTTGATTTC+AGG | + | chr3.3:61900304-61900323 | MS.gene008043:intron | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | chr3.3:61897018-61897037 | MS.gene008043:intron | 30.0% |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | chr3.3:61900244-61900263 | MS.gene008043:intron | 30.0% |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | chr3.3:61897928-61897947 | None:intergenic | 30.0% |
| AACCAAACCCTTAGATGAAA+AGG | - | chr3.3:61897983-61898002 | None:intergenic | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | - | chr3.3:61900089-61900108 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | chr3.3:61899121-61899140 | MS.gene008043:intron | 35.0% | |
| ACAAATGACTAGGCAAAAAC+TGG | - | chr3.3:61899097-61899116 | None:intergenic | 35.0% | |
| ACCAAACCCTTAGATGAAAA+GGG | - | chr3.3:61897982-61898001 | None:intergenic | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | chr3.3:61897224-61897243 | None:intergenic | 35.0% | |
| ATCCCTTAACAAAAGGATAG+TGG | - | chr3.3:61897484-61897503 | None:intergenic | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | chr3.3:61899940-61899959 | MS.gene008043:intron | 35.0% | |
| CAAAAAGATAAGCGTTTCAG+TGG | + | chr3.3:61897170-61897189 | MS.gene008043:CDS | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | chr3.3:61900264-61900283 | None:intergenic | 35.0% | |
| GAAAAACCCAATTCAACAGA+AGG | - | chr3.3:61898063-61898082 | None:intergenic | 35.0% | |
| GACAAATAAGTTACGACAGT+AGG | + | chr3.3:61899020-61899039 | MS.gene008043:intron | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | chr3.3:61897128-61897147 | MS.gene008043:CDS | 35.0% | |
| GGTGAAATTTCAGCTAAAGA+AGG | + | chr3.3:61899710-61899729 | MS.gene008043:CDS | 35.0% | |
| GTTTGTGATTTAGAGGAAAG+TGG | - | chr3.3:61897901-61897920 | None:intergenic | 35.0% | |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | chr3.3:61899820-61899839 | MS.gene008043:CDS | 35.0% | |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | chr3.3:61897043-61897062 | MS.gene008043:intron | 35.0% | |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | chr3.3:61899266-61899285 | MS.gene008043:CDS | 35.0% |
| ! | AAGATGAAGCTTTGTATGCT+TGG | + | chr3.3:61897224-61897243 | MS.gene008043:CDS | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | chr3.3:61897170-61897189 | None:intergenic | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | + | chr3.3:61897478-61897497 | MS.gene008043:intron | 35.0% |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | chr3.3:61899148-61899167 | MS.gene008043:CDS | 35.0% |
| ! | GAATATTCGATTAGGTGTTG+TGG | + | chr3.3:61898701-61898720 | MS.gene008043:intron | 35.0% |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | chr3.3:61898352-61898371 | MS.gene008043:intron | 35.0% |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | chr3.3:61897135-61897154 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | chr3.3:61899265-61899284 | MS.gene008043:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | chr3.3:61899228-61899247 | None:intergenic | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | chr3.3:61898368-61898387 | MS.gene008043:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | chr3.3:61898911-61898930 | MS.gene008043:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | chr3.3:61898374-61898393 | MS.gene008043:intron | 35.0% |
| !! | TAGCACCACCGATTTATATT+AGG | - | chr3.3:61897730-61897749 | None:intergenic | 35.0% |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | chr3.3:61897908-61897927 | None:intergenic | 35.0% |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | chr3.3:61897984-61898003 | MS.gene008043:intron | 35.0% |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | chr3.3:61899818-61899837 | None:intergenic | 35.0% |
| AAAGCTTCATCTTAGGACGA+GGG | - | chr3.3:61897217-61897236 | None:intergenic | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | chr3.3:61898054-61898073 | MS.gene008043:intron | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | chr3.3:61899134-61899153 | MS.gene008043:intron | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | chr3.3:61897946-61897965 | MS.gene008043:intron | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | chr3.3:61897073-61897092 | MS.gene008043:CDS | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | chr3.3:61898408-61898427 | None:intergenic | 40.0% | |
| ATGACTAGGCAAAAACTGGA+AGG | - | chr3.3:61899093-61899112 | None:intergenic | 40.0% | |
| CACTGATCCAATTTCTGATG+GGG | + | chr3.3:61898227-61898246 | MS.gene008043:intron | 40.0% | |
| GACCTCAAATTAGGGATAAG+TGG | + | chr3.3:61900084-61900103 | MS.gene008043:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | chr3.3:61899309-61899328 | MS.gene008043:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | chr3.3:61898053-61898072 | MS.gene008043:intron | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | chr3.3:61899135-61899154 | None:intergenic | 40.0% | |
| TCAAGATCTGAGCTTCTTGT+TGG | - | chr3.3:61897946-61897965 | None:intergenic | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | chr3.3:61899663-61899682 | MS.gene008043:CDS | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | chr3.3:61898237-61898256 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | chr3.3:61898925-61898944 | MS.gene008043:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | chr3.3:61898226-61898245 | MS.gene008043:intron | 40.0% |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | - | chr3.3:61897476-61897495 | None:intergenic | 40.0% |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | chr3.3:61900309-61900328 | MS.gene008043:intron | 40.0% |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | chr3.3:61899826-61899845 | None:intergenic | 40.0% |
| AAGGAAAATCAGATGGGAGC+AGG | - | chr3.3:61898126-61898145 | None:intergenic | 45.0% | |
| ACCCTTAGATGAAAAGGGCT+TGG | - | chr3.3:61897977-61897996 | None:intergenic | 45.0% | |
| AGGAAAATCAGATGGGAGCA+GGG | - | chr3.3:61898125-61898144 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | chr3.3:61897198-61897217 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | chr3.3:61897209-61897228 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | chr3.3:61897218-61897237 | None:intergenic | 45.0% | |
| CATGCTAGCATTTCACCGAA+GGG | - | chr3.3:61899958-61899977 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | chr3.3:61899668-61899687 | MS.gene008043:CDS | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | chr3.3:61899235-61899254 | MS.gene008043:CDS | 45.0% | |
| CCGAACCTGAAATCAACAGT+AGG | - | chr3.3:61900312-61900331 | None:intergenic | 45.0% | |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | chr3.3:61899238-61899257 | None:intergenic | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | chr3.3:61899671-61899690 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | chr3.3:61899662-61899681 | MS.gene008043:CDS | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | chr3.3:61897974-61897993 | None:intergenic | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | chr3.3:61899653-61899672 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | + | chr3.3:61897831-61897850 | MS.gene008043:intron | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | chr3.3:61899683-61899702 | MS.gene008043:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | chr3.3:61899689-61899708 | MS.gene008043:CDS | 45.0% | |
| GTATACCTCTTCGACGTGTT+GGG | - | chr3.3:61897255-61897274 | None:intergenic | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | chr3.3:61899959-61899978 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | chr3.3:61899654-61899673 | None:intergenic | 45.0% | |
| TGTATACCTCTTCGACGTGT+TGG | - | chr3.3:61897256-61897275 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | - | chr3.3:61900007-61900026 | None:intergenic | 45.0% |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | chr3.3:61897973-61897992 | MS.gene008043:intron | 45.0% |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | chr3.3:61897978-61897997 | MS.gene008043:intron | 45.0% |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | chr3.3:61899723-61899742 | MS.gene008043:CDS | 45.0% |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | chr3.3:61898225-61898244 | MS.gene008043:intron | 45.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | chr3.3:61899749-61899768 | MS.gene008043:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | chr3.3:61899303-61899322 | MS.gene008043:intron | 50.0% | |
| GCAGGCAGAGAAGATAGGTT+TGG | + | chr3.3:61899139-61899158 | MS.gene008043:intron | 50.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | chr3.3:61897065-61897084 | MS.gene008043:CDS | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | chr3.3:61899280-61899299 | None:intergenic | 50.0% | |
| TTTGCTGAGCTGAGAGAGCA+GGG | + | chr3.3:61897810-61897829 | MS.gene008043:intron | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr3.3:61899283-61899302 | MS.gene008043:CDS | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | chr3.3:61897972-61897991 | MS.gene008043:intron | 50.0% |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | + | chr3.3:61897809-61897828 | MS.gene008043:intron | 50.0% |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | chr3.3:61899722-61899741 | MS.gene008043:CDS | 50.0% |
| AGAATGAGAGAGGCCTCGAG+TGG | + | chr3.3:61897841-61897860 | MS.gene008043:intron | 55.0% | |
| AGACCAGGACCCAAAAGACG+GGG | - | chr3.3:61899278-61899297 | None:intergenic | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | chr3.3:61898394-61898413 | MS.gene008043:intron | 55.0% | |
| CTCTGCATGGGAGTAGCTGT+GGG | + | chr3.3:61899735-61899754 | MS.gene008043:CDS | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | chr3.3:61897842-61897861 | MS.gene008043:intron | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | chr3.3:61899279-61899298 | None:intergenic | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | chr3.3:61897857-61897876 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr3.3:61899293-61899312 | None:intergenic | 55.0% |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | chr3.3:61899272-61899291 | MS.gene008043:CDS | 55.0% |
| AGACGCCCAACACGTCGAAG+AGG | + | chr3.3:61897247-61897266 | MS.gene008043:CDS | 60.0% | |
| GCTCTGCATGGGAGTAGCTG+TGG | + | chr3.3:61899734-61899753 | MS.gene008043:CDS | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr3.3:61899287-61899306 | MS.gene008043:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 61896902 | 61900379 | 61896902 | ID=MS.gene008043 |
| chr3.3 | mRNA | 61896902 | 61900379 | 61896902 | ID=MS.gene008043.t1;Parent=MS.gene008043 |
| chr3.3 | exon | 61896902 | 61896906 | 61896902 | ID=MS.gene008043.t1.exon1;Parent=MS.gene008043.t1 |
| chr3.3 | CDS | 61896902 | 61896906 | 61896902 | ID=cds.MS.gene008043.t1;Parent=MS.gene008043.t1 |
| chr3.3 | exon | 61897049 | 61897268 | 61897049 | ID=MS.gene008043.t1.exon2;Parent=MS.gene008043.t1 |
| chr3.3 | CDS | 61897049 | 61897268 | 61897049 | ID=cds.MS.gene008043.t1;Parent=MS.gene008043.t1 |
| chr3.3 | exon | 61899143 | 61899308 | 61899143 | ID=MS.gene008043.t1.exon3;Parent=MS.gene008043.t1 |
| chr3.3 | CDS | 61899143 | 61899308 | 61899143 | ID=cds.MS.gene008043.t1;Parent=MS.gene008043.t1 |
| chr3.3 | exon | 61899643 | 61899848 | 61899643 | ID=MS.gene008043.t1.exon4;Parent=MS.gene008043.t1 |
| chr3.3 | CDS | 61899643 | 61899848 | 61899643 | ID=cds.MS.gene008043.t1;Parent=MS.gene008043.t1 |
| chr3.3 | exon | 61900326 | 61900379 | 61900326 | ID=MS.gene008043.t1.exon5;Parent=MS.gene008043.t1 |
| chr3.3 | CDS | 61900326 | 61900379 | 61900326 | ID=cds.MS.gene008043.t1;Parent=MS.gene008043.t1 |
| Gene Sequence |
| Protein sequence |
