Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015407.t1 | XP_003611340.1 | 99.1 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 1.10E-112 | 416 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015407.t1 | B8B9K6 | 87.0 | 216 | 28 | 0 | 1 | 216 | 1 | 216 | 7.0e-105 | 381.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015407.t1 | G7JXE1 | 99.1 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 7.7e-113 | 416.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015407 | MS.gene43038 | PPI |
MS.gene35416 | MS.gene015407 | PPI |
MS.gene015407 | MS.gene09755 | PPI |
MS.gene82038 | MS.gene015407 | PPI |
MS.gene015407 | MS.gene008043 | PPI |
MS.gene015407 | MS.gene82038 | PPI |
MS.gene015407 | MS.gene034454 | PPI |
MS.gene015407 | MS.gene82545 | PPI |
MS.gene21219 | MS.gene015407 | PPI |
MS.gene015407 | MS.gene84323 | PPI |
MS.gene015407 | MS.gene031955 | PPI |
MS.gene015407 | MS.gene09753 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015407.t1 | MTR_5g012930 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 1.14e-157 | 435 |
MS.gene015407.t1 | MTR_2g086500 | 98.148 | 216 | 4 | 0 | 1 | 216 | 1 | 216 | 3.85e-156 | 431 |
MS.gene015407.t1 | MTR_3g070930 | 96.759 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 3.82e-154 | 426 |
MS.gene015407.t1 | MTR_3g070930 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 3.66e-72 | 216 |
MS.gene015407.t1 | MTR_1g098350 | 70.330 | 91 | 6 | 1 | 39 | 129 | 47 | 116 | 8.32e-19 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015407.t1 | AT1G08360 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 5.30e-129 | 362 |
MS.gene015407.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 8.97e-129 | 362 |
MS.gene015407.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 8.97e-129 | 362 |
MS.gene015407.t1 | AT5G22440 | 88.479 | 217 | 24 | 1 | 1 | 216 | 1 | 217 | 2.23e-125 | 353 |
MS.gene015407.t1 | AT5G22440 | 88.479 | 217 | 24 | 1 | 1 | 216 | 1 | 217 | 2.23e-125 | 353 |
Find 44 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACACTCAGTTGTACATTT+TGG | 0.198216 | 5.2:+5116132 | None:intergenic |
CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 5.2:-5116577 | MS.gene015407:CDS |
TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 5.2:-5116640 | MS.gene015407:CDS |
AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 5.2:+5116602 | None:intergenic |
CCTTAGCCTCAAGAGATTCT+TGG | 0.298498 | 5.2:+5116252 | None:intergenic |
CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 5.2:+5117554 | None:intergenic |
ACATTTCAGGCAGAGAAAAT+AGG | 0.370797 | 5.2:-5116708 | MS.gene015407:intron |
TTTGGAATCACCCATGATTC+CGG | 0.376846 | 5.2:+5117585 | None:intergenic |
AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 5.2:-5116171 | MS.gene015407:CDS |
AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 5.2:-5117596 | MS.gene015407:CDS |
CAGAGAAAATAGGACTTGAT+TGG | 0.439462 | 5.2:-5116698 | MS.gene015407:CDS |
AAGATGAAAATTTGCATGCT+TGG | 0.446340 | 5.2:-5117445 | MS.gene015407:CDS |
TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 5.2:+5116201 | None:intergenic |
TATTACCTCCTCAACATGTT+GGG | 0.453017 | 5.2:+5117417 | None:intergenic |
GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 5.2:-5117494 | MS.gene015407:CDS |
GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 5.2:-5117541 | MS.gene015407:CDS |
CCAAGAATCTCTTGAGGCTA+AGG | 0.491564 | 5.2:-5116252 | MS.gene015407:CDS |
GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 5.2:-5117604 | MS.gene015407:CDS |
CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 5.2:+5116593 | None:intergenic |
GGCTAAGGTCAACGAGACTA+AGG | 0.524689 | 5.2:-5116237 | MS.gene015407:CDS |
CTTGTATCTGAAGAGCTCCA+TGG | 0.529145 | 5.2:-5115659 | MS.gene015407:CDS |
TTATTACCTCCTCAACATGT+TGG | 0.532530 | 5.2:+5117416 | None:intergenic |
ATCTTTGGTCTCGGAATGTG+AGG | 0.537988 | 5.2:+5117463 | None:intergenic |
TTGTATCTGAAGAGCTCCAT+GGG | 0.541851 | 5.2:-5115658 | MS.gene015407:CDS |
GAAAATAGGACTTGATTGGA+TGG | 0.550863 | 5.2:-5116694 | MS.gene015407:CDS |
GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 5.2:-5117595 | MS.gene015407:CDS |
GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 5.2:-5116555 | MS.gene015407:intron |
TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 5.2:+5116255 | None:intergenic |
CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 5.2:-5116197 | MS.gene015407:CDS |
TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 5.2:-5116559 | MS.gene015407:CDS |
GGTCAACGAGACTAAGGCTA+TGG | 0.586274 | 5.2:-5116231 | MS.gene015407:CDS |
GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 5.2:-5116198 | MS.gene015407:CDS |
TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 5.2:+5116269 | None:intergenic |
CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 5.2:+5116270 | None:intergenic |
AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 5.2:+5115626 | None:intergenic |
TGGTGATGCCCAACATGTTG+AGG | 0.623552 | 5.2:-5117425 | MS.gene015407:CDS |
ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 5.2:+5116552 | None:intergenic |
AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 5.2:+5116256 | None:intergenic |
CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 5.2:-5117499 | MS.gene015407:CDS |
TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 5.2:-5116258 | MS.gene015407:CDS |
GACTCGGTAAGATTTGCCCA+TGG | 0.657512 | 5.2:+5115642 | None:intergenic |
TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 5.2:-5116185 | MS.gene015407:CDS |
AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 5.2:+5116567 | None:intergenic |
TGATGCCCAACATGTTGAGG+AGG | 0.714764 | 5.2:-5117422 | MS.gene015407:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTGAAAGAAACAATTTA+TGG | + | chr5.2:5117107-5117126 | None:intergenic | 15.0% |
!! | ATTACTAACATAAAACATAA+AGG | + | chr5.2:5116984-5117003 | None:intergenic | 15.0% |
!! | TAAAACATAAAGGATATATG+TGG | + | chr5.2:5116974-5116993 | None:intergenic | 20.0% |
!!! | TAACTGAGATTTGATTTATA+TGG | - | chr5.2:5115759-5115778 | MS.gene015407:intron | 20.0% |
!!! | TTTAAATTACCAACTGTTTT+TGG | - | chr5.2:5117024-5117043 | MS.gene015407:intron | 20.0% |
! | AACAGTTTACATTAATTCGA+TGG | + | chr5.2:5117752-5117771 | None:intergenic | 25.0% |
! | AATGCCTTCTATCAAAATTT+CGG | - | chr5.2:5116199-5116218 | MS.gene015407:CDS | 25.0% |
! | ATAGCAATCAACCAAATAAA+TGG | + | chr5.2:5116284-5116303 | None:intergenic | 25.0% |
! | GATGTTATAGACATATACTT+GGG | + | chr5.2:5117549-5117568 | None:intergenic | 25.0% |
! | GCTAAACAAAAATAAGAAAC+TGG | - | chr5.2:5116798-5116817 | MS.gene015407:intron | 25.0% |
! | GCTTAAAGAAGCTTAAAAAA+AGG | + | chr5.2:5115693-5115712 | None:intergenic | 25.0% |
! | TATGGTGAAAATTGAAAACA+AGG | + | chr5.2:5117657-5117676 | None:intergenic | 25.0% |
! | TGATGTTATAGACATATACT+TGG | + | chr5.2:5117550-5117569 | None:intergenic | 25.0% |
! | TGCTAAATAAAATGAAGCAA+CGG | + | chr5.2:5117062-5117081 | None:intergenic | 25.0% |
!! | AAATTTACGGTTTTTCTCTT+TGG | + | chr5.2:5115886-5115905 | None:intergenic | 25.0% |
!! | ATAAATTTTGTGACACTGTT+TGG | + | chr5.2:5116543-5116562 | None:intergenic | 25.0% |
!!! | CTATTAATCACTTATTTTCC+TGG | - | chr5.2:5116300-5116319 | MS.gene015407:intron | 25.0% |
!!! | CTGCTTTAGAATAAATAATC+AGG | - | chr5.2:5117723-5117742 | MS.gene015407:intron | 25.0% |
AAGATGAAAATTTGCATGCT+TGG | - | chr5.2:5116005-5116024 | MS.gene015407:intron | 30.0% | |
AATTATTGCTTGAGCTGATT+TGG | - | chr5.2:5117129-5117148 | MS.gene015407:intron | 30.0% | |
AGAGAAAAACCGTAAATTTG+TGG | - | chr5.2:5115887-5115906 | MS.gene015407:intron | 30.0% | |
ATTGGATGATGAGCAATAAT+AGG | - | chr5.2:5117451-5117470 | MS.gene015407:CDS | 30.0% | |
CAAAAAAATATCCTATGCTC+TGG | + | chr5.2:5116669-5116688 | None:intergenic | 30.0% | |
CAATAGTCTCCACAAATTTA+CGG | + | chr5.2:5115899-5115918 | None:intergenic | 30.0% | |
GAAAAACTATGATCCTCAAA+AGG | - | chr5.2:5115935-5115954 | MS.gene015407:intron | 30.0% | |
GAATTAATGTAAACTGTTGC+TGG | - | chr5.2:5117754-5117773 | MS.gene015407:intron | 30.0% | |
GACATTAGTATGTTGAATTG+TGG | + | chr5.2:5116613-5116632 | None:intergenic | 30.0% | |
TAAGAAACTGGTGAAGAAAT+TGG | - | chr5.2:5116810-5116829 | MS.gene015407:intron | 30.0% | |
TTATAGACATATACTTGGGA+TGG | + | chr5.2:5117545-5117564 | None:intergenic | 30.0% | |
! | AGCATGCAAATTTTCATCTT+TGG | + | chr5.2:5116005-5116024 | None:intergenic | 30.0% |
! | ATTTTACTCGATGTTATGAG+TGG | + | chr5.2:5117391-5117410 | None:intergenic | 30.0% |
! | CAAATTTTCATCTTTGGTCT+CGG | + | chr5.2:5115999-5116018 | None:intergenic | 30.0% |
! | CTTTGTTACCTTCTATTTTG+TGG | - | chr5.2:5117416-5117435 | MS.gene015407:intron | 30.0% |
! | TAACACTCAGTTGTACATTT+TGG | + | chr5.2:5117321-5117340 | None:intergenic | 30.0% |
! | TGTGTGAATTGCCATTTATT+TGG | - | chr5.2:5116270-5116289 | MS.gene015407:CDS | 30.0% |
! | TTTTCACTCAAACTGTTTGT+TGG | - | chr5.2:5116063-5116082 | MS.gene015407:intron | 30.0% |
!! | CATAGTTTTTCAAACCAATC+TGG | + | chr5.2:5115926-5115945 | None:intergenic | 30.0% |
!! | CTTCATTTTATTTAGCAACC+AGG | - | chr5.2:5117065-5117084 | MS.gene015407:intron | 30.0% |
!! | TGTCTTTCATTTAGTCTTGA+TGG | - | chr5.2:5116629-5116648 | MS.gene015407:CDS | 30.0% |
AAGTAATAGTCCGACATTAG+AGG | - | chr5.2:5117504-5117523 | MS.gene015407:CDS | 35.0% | |
ACATTTCAGGCAGAGAAAAT+AGG | - | chr5.2:5116742-5116761 | MS.gene015407:intron | 35.0% | |
AGACAAGTAGAATAAGAGAG+AGG | + | chr5.2:5115659-5115678 | None:intergenic | 35.0% | |
CAAAAGGATAAACGTTTCAG+CGG | - | chr5.2:5115951-5115970 | MS.gene015407:intron | 35.0% | |
CAATTCAGCAATAACTACCT+CGG | + | chr5.2:5116230-5116249 | None:intergenic | 35.0% | |
CACTCTAATATGCACATTTC+AGG | - | chr5.2:5116729-5116748 | MS.gene015407:intron | 35.0% | |
CAGAGAAAATAGGACTTGAT+TGG | - | chr5.2:5116752-5116771 | MS.gene015407:intron | 35.0% | |
CATCATCACCACAAAATAGA+AGG | + | chr5.2:5117427-5117446 | None:intergenic | 35.0% | |
GAAAATAGGACTTGATTGGA+TGG | - | chr5.2:5116756-5116775 | MS.gene015407:intron | 35.0% | |
GACAAGTAGAATAAGAGAGA+GGG | + | chr5.2:5115658-5115677 | None:intergenic | 35.0% | |
GAGTATGAACCAAAAACAGT+TGG | + | chr5.2:5117036-5117055 | None:intergenic | 35.0% | |
GGCAAACTTTCAAATAAACC+TGG | + | chr5.2:5117086-5117105 | None:intergenic | 35.0% | |
TATTACCTCCTCAACATGTT+GGG | + | chr5.2:5116036-5116055 | None:intergenic | 35.0% | |
TCACCATATATGTTCTTCAG+TGG | - | chr5.2:5117669-5117688 | MS.gene015407:intron | 35.0% | |
TGTCCTTGTTGAAAAAGAAC+TGG | - | chr5.2:5117350-5117369 | MS.gene015407:intron | 35.0% | |
TTATTACCTCCTCAACATGT+TGG | + | chr5.2:5116037-5116056 | None:intergenic | 35.0% | |
! | AAACAGATTCCTCGTCTTTT+GGG | - | chr5.2:5116874-5116893 | MS.gene015407:intron | 35.0% |
! | CTGAAACGTTTATCCTTTTG+AGG | + | chr5.2:5115951-5115970 | None:intergenic | 35.0% |
! | TTGTGGTGATGATGAATCAT+TGG | - | chr5.2:5117433-5117452 | MS.gene015407:CDS | 35.0% |
!! | AGCACCGAAATTTTGATAGA+AGG | + | chr5.2:5116206-5116225 | None:intergenic | 35.0% |
!! | GCTGTTTTCATAAGCTATCT+TGG | - | chr5.2:5116449-5116468 | MS.gene015407:intron | 35.0% |
!!! | GCTGATTTGGATATTTTGCA+TGG | - | chr5.2:5117142-5117161 | MS.gene015407:intron | 35.0% |
!!! | TTGCCAGTTCTTTTTCAACA+AGG | + | chr5.2:5117356-5117375 | None:intergenic | 35.0% |
AACAGCTTCAGAGGCTAAAA+AGG | + | chr5.2:5116851-5116870 | None:intergenic | 40.0% | |
ACAAACACGAAACACTGACA+CGG | - | chr5.2:5116090-5116109 | MS.gene015407:intron | 40.0% | |
AGAAGCTATTACCGGAATCA+TGG | - | chr5.2:5115854-5115873 | MS.gene015407:intron | 40.0% | |
AGCAAATCCAAACAGACACT+TGG | - | chr5.2:5116584-5116603 | MS.gene015407:CDS | 40.0% | |
AGCTGTTGGCAATGTTAGTA+TGG | - | chr5.2:5117279-5117298 | MS.gene015407:intron | 40.0% | |
CACTCTATCAAACACGTGTT+CGG | + | chr5.2:5116176-5116195 | None:intergenic | 40.0% | |
GAAGCTATTACCGGAATCAT+GGG | - | chr5.2:5115855-5115874 | MS.gene015407:intron | 40.0% | |
GAGACTATTGAACTCCAGAT+TGG | - | chr5.2:5115909-5115928 | MS.gene015407:intron | 40.0% | |
GCACCACTGAAGAACATATA+TGG | + | chr5.2:5117675-5117694 | None:intergenic | 40.0% | |
GCTTATCTCAGCTTATCTAC+TGG | + | chr5.2:5116567-5116586 | None:intergenic | 40.0% | |
TTGTATCTGAAGAGCTCCAT+GGG | - | chr5.2:5117792-5117811 | MS.gene015407:intron | 40.0% | |
! | CAAACAGATTCCTCGTCTTT+TGG | - | chr5.2:5116873-5116892 | MS.gene015407:intron | 40.0% |
! | CTGTTTGATAACAGCTTCAG+AGG | + | chr5.2:5116860-5116879 | None:intergenic | 40.0% |
! | GCAGGCATGTGTTTTCTTTT+GGG | - | chr5.2:5116913-5116932 | MS.gene015407:intron | 40.0% |
! | GTGTTTTCTTTTGGGCGTTT+TGG | - | chr5.2:5116921-5116940 | MS.gene015407:intron | 40.0% |
! | TGATTTTGCATCCAGAGCAT+AGG | - | chr5.2:5116655-5116674 | MS.gene015407:CDS | 40.0% |
! | TTTGGAATCACCCATGATTC+CGG | + | chr5.2:5115868-5115887 | None:intergenic | 40.0% |
!! | CTCAAGAAAGTGTTGTGCAT+GGG | - | chr5.2:5117253-5117272 | MS.gene015407:intron | 40.0% |
!! | GATATTTTGCATGGCTTTGC+AGG | - | chr5.2:5117151-5117170 | MS.gene015407:intron | 40.0% |
!! | TGTAAACTGTTGCTGGTTTC+AGG | - | chr5.2:5117761-5117780 | MS.gene015407:intron | 40.0% |
!!! | TCTTTTTCAACAAGGACACG+AGG | + | chr5.2:5117348-5117367 | None:intergenic | 40.0% |
AGCCTCAAGAGATTCTTGGT+GGG | + | chr5.2:5117197-5117216 | None:intergenic | 45.0% | |
ATAGTCCGACATTAGAGGAC+TGG | - | chr5.2:5117509-5117528 | MS.gene015407:CDS | 45.0% | |
ATCTTTGGTCTCGGAATGTG+AGG | + | chr5.2:5115990-5116009 | None:intergenic | 45.0% | |
CCAAGAATCTCTTGAGGCTA+AGG | - | chr5.2:5117198-5117217 | MS.gene015407:intron | 45.0% | |
CCTTAGCCTCAAGAGATTCT+TGG | + | chr5.2:5117201-5117220 | None:intergenic | 45.0% | |
CGAACACGTGTTTGATAGAG+TGG | - | chr5.2:5116174-5116193 | MS.gene015407:CDS | 45.0% | |
CTTCAGAGGCTAAAAAGGCA+TGG | + | chr5.2:5116846-5116865 | None:intergenic | 45.0% | |
CTTGGTGGGAAACAAGTGTA+GGG | + | chr5.2:5117183-5117202 | None:intergenic | 45.0% | |
CTTGTATCTGAAGAGCTCCA+TGG | - | chr5.2:5117791-5117810 | MS.gene015407:intron | 45.0% | |
GAAAGCCAGTCCTCTAATGT+CGG | + | chr5.2:5117517-5117536 | None:intergenic | 45.0% | |
GACATCTTCACAAGGTTGTG+AGG | + | chr5.2:5117628-5117647 | None:intergenic | 45.0% | |
GAGACTGTTGTATGCGACTT+AGG | - | chr5.2:5116343-5116362 | MS.gene015407:intron | 45.0% | |
GCTGTGAGAGAAGCTATTAC+CGG | - | chr5.2:5115846-5115865 | MS.gene015407:intron | 45.0% | |
GGATAAACGTTTCAGCGGTT+CGG | - | chr5.2:5115956-5115975 | MS.gene015407:intron | 45.0% | |
GTGGTTACCAAGTGTCTGTT+TGG | + | chr5.2:5116594-5116613 | None:intergenic | 45.0% | |
TAGCCTCAAGAGATTCTTGG+TGG | + | chr5.2:5117198-5117217 | None:intergenic | 45.0% | |
TCTTGGTGGGAAACAAGTGT+AGG | + | chr5.2:5117184-5117203 | None:intergenic | 45.0% | |
TGCACAACACTTTCTTGAGC+TGG | + | chr5.2:5117252-5117271 | None:intergenic | 45.0% | |
TGTGACATCTGACTCATACC+AGG | + | chr5.2:5116321-5116340 | None:intergenic | 45.0% | |
TTCCCACCAAGAATCTCTTG+AGG | - | chr5.2:5117192-5117211 | MS.gene015407:intron | 45.0% | |
! | GGCAGGCATGTGTTTTCTTT+TGG | - | chr5.2:5116912-5116931 | MS.gene015407:intron | 45.0% |
!! | ACTGTTGCTGGTTTCAGGTT+AGG | - | chr5.2:5117766-5117785 | MS.gene015407:intron | 45.0% |
!! | GCTCAAGAAAGTGTTGTGCA+TGG | - | chr5.2:5117252-5117271 | MS.gene015407:intron | 45.0% |
!! | TCAAAATTTCGGTGCTACCG+AGG | - | chr5.2:5116210-5116229 | MS.gene015407:CDS | 45.0% |
GGCTAAGGTCAACGAGACTA+AGG | - | chr5.2:5117213-5117232 | MS.gene015407:intron | 50.0% | |
GGTACTGCGACATCTTCACA+AGG | + | chr5.2:5117636-5117655 | None:intergenic | 50.0% | |
GGTCAACGAGACTAAGGCTA+TGG | - | chr5.2:5117219-5117238 | MS.gene015407:intron | 50.0% | |
TGATGCCCAACATGTTGAGG+AGG | - | chr5.2:5116028-5116047 | MS.gene015407:intron | 50.0% | |
TTGTGCATGGGAGTAGCTGT+TGG | - | chr5.2:5117265-5117284 | MS.gene015407:intron | 50.0% | |
TTTGGGTCCTGGTCTCAACA+AGG | - | chr5.2:5116891-5116910 | MS.gene015407:intron | 50.0% | |
! | GACTCGGTAAGATTTGCCCA+TGG | + | chr5.2:5117811-5117830 | None:intergenic | 50.0% |
! | TGGTGATGCCCAACATGTTG+AGG | - | chr5.2:5116025-5116044 | MS.gene015407:intron | 50.0% |
!! | ATTCCTCGTCTTTTGGGTCC+TGG | - | chr5.2:5116880-5116899 | MS.gene015407:intron | 50.0% |
AGACCAGGACCCAAAAGACG+AGG | + | chr5.2:5116886-5116905 | None:intergenic | 55.0% | |
! | ATGCCTGCCTTGTTGAGACC+AGG | + | chr5.2:5116901-5116920 | None:intergenic | 55.0% |
GGTCCTGGTCTCAACAAGGC+AGG | - | chr5.2:5116895-5116914 | MS.gene015407:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 5115636 | 5117836 | 5115636 | ID=MS.gene015407 |
chr5.2 | mRNA | 5115636 | 5117836 | 5115636 | ID=MS.gene015407.t1;Parent=MS.gene015407 |
chr5.2 | exon | 5117832 | 5117836 | 5117832 | ID=MS.gene015407.t1.exon1;Parent=MS.gene015407.t1 |
chr5.2 | CDS | 5117832 | 5117836 | 5117832 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
chr5.2 | exon | 5117423 | 5117642 | 5117423 | ID=MS.gene015407.t1.exon2;Parent=MS.gene015407.t1 |
chr5.2 | CDS | 5117423 | 5117642 | 5117423 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
chr5.2 | exon | 5116556 | 5116721 | 5116556 | ID=MS.gene015407.t1.exon3;Parent=MS.gene015407.t1 |
chr5.2 | CDS | 5116556 | 5116721 | 5116556 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
chr5.2 | exon | 5116094 | 5116299 | 5116094 | ID=MS.gene015407.t1.exon4;Parent=MS.gene015407.t1 |
chr5.2 | CDS | 5116094 | 5116299 | 5116094 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
chr5.2 | exon | 5115636 | 5115689 | 5115636 | ID=MS.gene015407.t1.exon5;Parent=MS.gene015407.t1 |
chr5.2 | CDS | 5115636 | 5115689 | 5115636 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
Gene Sequence |
Protein sequence |