Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015407.t1 | XP_003611340.1 | 99.1 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 1.10E-112 | 416 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015407.t1 | B8B9K6 | 87.0 | 216 | 28 | 0 | 1 | 216 | 1 | 216 | 7.0e-105 | 381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015407.t1 | G7JXE1 | 99.1 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 7.7e-113 | 416.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015407 | MS.gene43038 | PPI |
| MS.gene35416 | MS.gene015407 | PPI |
| MS.gene015407 | MS.gene09755 | PPI |
| MS.gene82038 | MS.gene015407 | PPI |
| MS.gene015407 | MS.gene008043 | PPI |
| MS.gene015407 | MS.gene82038 | PPI |
| MS.gene015407 | MS.gene034454 | PPI |
| MS.gene015407 | MS.gene82545 | PPI |
| MS.gene21219 | MS.gene015407 | PPI |
| MS.gene015407 | MS.gene84323 | PPI |
| MS.gene015407 | MS.gene031955 | PPI |
| MS.gene015407 | MS.gene09753 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015407.t1 | MTR_5g012930 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 1.14e-157 | 435 |
| MS.gene015407.t1 | MTR_2g086500 | 98.148 | 216 | 4 | 0 | 1 | 216 | 1 | 216 | 3.85e-156 | 431 |
| MS.gene015407.t1 | MTR_3g070930 | 96.759 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 3.82e-154 | 426 |
| MS.gene015407.t1 | MTR_3g070930 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 3.66e-72 | 216 |
| MS.gene015407.t1 | MTR_1g098350 | 70.330 | 91 | 6 | 1 | 39 | 129 | 47 | 116 | 8.32e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015407.t1 | AT1G08360 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 5.30e-129 | 362 |
| MS.gene015407.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 8.97e-129 | 362 |
| MS.gene015407.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 8.97e-129 | 362 |
| MS.gene015407.t1 | AT5G22440 | 88.479 | 217 | 24 | 1 | 1 | 216 | 1 | 217 | 2.23e-125 | 353 |
| MS.gene015407.t1 | AT5G22440 | 88.479 | 217 | 24 | 1 | 1 | 216 | 1 | 217 | 2.23e-125 | 353 |
Find 44 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACTCAGTTGTACATTT+TGG | 0.198216 | 5.2:+5116132 | None:intergenic |
| CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 5.2:-5116577 | MS.gene015407:CDS |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 5.2:-5116640 | MS.gene015407:CDS |
| AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 5.2:+5116602 | None:intergenic |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.298498 | 5.2:+5116252 | None:intergenic |
| CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 5.2:+5117554 | None:intergenic |
| ACATTTCAGGCAGAGAAAAT+AGG | 0.370797 | 5.2:-5116708 | MS.gene015407:intron |
| TTTGGAATCACCCATGATTC+CGG | 0.376846 | 5.2:+5117585 | None:intergenic |
| AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 5.2:-5116171 | MS.gene015407:CDS |
| AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 5.2:-5117596 | MS.gene015407:CDS |
| CAGAGAAAATAGGACTTGAT+TGG | 0.439462 | 5.2:-5116698 | MS.gene015407:CDS |
| AAGATGAAAATTTGCATGCT+TGG | 0.446340 | 5.2:-5117445 | MS.gene015407:CDS |
| TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 5.2:+5116201 | None:intergenic |
| TATTACCTCCTCAACATGTT+GGG | 0.453017 | 5.2:+5117417 | None:intergenic |
| GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 5.2:-5117494 | MS.gene015407:CDS |
| GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 5.2:-5117541 | MS.gene015407:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.491564 | 5.2:-5116252 | MS.gene015407:CDS |
| GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 5.2:-5117604 | MS.gene015407:CDS |
| CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 5.2:+5116593 | None:intergenic |
| GGCTAAGGTCAACGAGACTA+AGG | 0.524689 | 5.2:-5116237 | MS.gene015407:CDS |
| CTTGTATCTGAAGAGCTCCA+TGG | 0.529145 | 5.2:-5115659 | MS.gene015407:CDS |
| TTATTACCTCCTCAACATGT+TGG | 0.532530 | 5.2:+5117416 | None:intergenic |
| ATCTTTGGTCTCGGAATGTG+AGG | 0.537988 | 5.2:+5117463 | None:intergenic |
| TTGTATCTGAAGAGCTCCAT+GGG | 0.541851 | 5.2:-5115658 | MS.gene015407:CDS |
| GAAAATAGGACTTGATTGGA+TGG | 0.550863 | 5.2:-5116694 | MS.gene015407:CDS |
| GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 5.2:-5117595 | MS.gene015407:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 5.2:-5116555 | MS.gene015407:intron |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 5.2:+5116255 | None:intergenic |
| CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 5.2:-5116197 | MS.gene015407:CDS |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 5.2:-5116559 | MS.gene015407:CDS |
| GGTCAACGAGACTAAGGCTA+TGG | 0.586274 | 5.2:-5116231 | MS.gene015407:CDS |
| GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 5.2:-5116198 | MS.gene015407:CDS |
| TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 5.2:+5116269 | None:intergenic |
| CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 5.2:+5116270 | None:intergenic |
| AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 5.2:+5115626 | None:intergenic |
| TGGTGATGCCCAACATGTTG+AGG | 0.623552 | 5.2:-5117425 | MS.gene015407:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 5.2:+5116552 | None:intergenic |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 5.2:+5116256 | None:intergenic |
| CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 5.2:-5117499 | MS.gene015407:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 5.2:-5116258 | MS.gene015407:CDS |
| GACTCGGTAAGATTTGCCCA+TGG | 0.657512 | 5.2:+5115642 | None:intergenic |
| TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 5.2:-5116185 | MS.gene015407:CDS |
| AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 5.2:+5116567 | None:intergenic |
| TGATGCCCAACATGTTGAGG+AGG | 0.714764 | 5.2:-5117422 | MS.gene015407:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGAAAGAAACAATTTA+TGG | + | chr5.2:5117107-5117126 | None:intergenic | 15.0% |
| !! | ATTACTAACATAAAACATAA+AGG | + | chr5.2:5116984-5117003 | None:intergenic | 15.0% |
| !! | TAAAACATAAAGGATATATG+TGG | + | chr5.2:5116974-5116993 | None:intergenic | 20.0% |
| !!! | TAACTGAGATTTGATTTATA+TGG | - | chr5.2:5115759-5115778 | MS.gene015407:intron | 20.0% |
| !!! | TTTAAATTACCAACTGTTTT+TGG | - | chr5.2:5117024-5117043 | MS.gene015407:intron | 20.0% |
| ! | AACAGTTTACATTAATTCGA+TGG | + | chr5.2:5117752-5117771 | None:intergenic | 25.0% |
| ! | AATGCCTTCTATCAAAATTT+CGG | - | chr5.2:5116199-5116218 | MS.gene015407:CDS | 25.0% |
| ! | ATAGCAATCAACCAAATAAA+TGG | + | chr5.2:5116284-5116303 | None:intergenic | 25.0% |
| ! | GATGTTATAGACATATACTT+GGG | + | chr5.2:5117549-5117568 | None:intergenic | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | - | chr5.2:5116798-5116817 | MS.gene015407:intron | 25.0% |
| ! | GCTTAAAGAAGCTTAAAAAA+AGG | + | chr5.2:5115693-5115712 | None:intergenic | 25.0% |
| ! | TATGGTGAAAATTGAAAACA+AGG | + | chr5.2:5117657-5117676 | None:intergenic | 25.0% |
| ! | TGATGTTATAGACATATACT+TGG | + | chr5.2:5117550-5117569 | None:intergenic | 25.0% |
| ! | TGCTAAATAAAATGAAGCAA+CGG | + | chr5.2:5117062-5117081 | None:intergenic | 25.0% |
| !! | AAATTTACGGTTTTTCTCTT+TGG | + | chr5.2:5115886-5115905 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGACACTGTT+TGG | + | chr5.2:5116543-5116562 | None:intergenic | 25.0% |
| !!! | CTATTAATCACTTATTTTCC+TGG | - | chr5.2:5116300-5116319 | MS.gene015407:intron | 25.0% |
| !!! | CTGCTTTAGAATAAATAATC+AGG | - | chr5.2:5117723-5117742 | MS.gene015407:intron | 25.0% |
| AAGATGAAAATTTGCATGCT+TGG | - | chr5.2:5116005-5116024 | MS.gene015407:intron | 30.0% | |
| AATTATTGCTTGAGCTGATT+TGG | - | chr5.2:5117129-5117148 | MS.gene015407:intron | 30.0% | |
| AGAGAAAAACCGTAAATTTG+TGG | - | chr5.2:5115887-5115906 | MS.gene015407:intron | 30.0% | |
| ATTGGATGATGAGCAATAAT+AGG | - | chr5.2:5117451-5117470 | MS.gene015407:CDS | 30.0% | |
| CAAAAAAATATCCTATGCTC+TGG | + | chr5.2:5116669-5116688 | None:intergenic | 30.0% | |
| CAATAGTCTCCACAAATTTA+CGG | + | chr5.2:5115899-5115918 | None:intergenic | 30.0% | |
| GAAAAACTATGATCCTCAAA+AGG | - | chr5.2:5115935-5115954 | MS.gene015407:intron | 30.0% | |
| GAATTAATGTAAACTGTTGC+TGG | - | chr5.2:5117754-5117773 | MS.gene015407:intron | 30.0% | |
| GACATTAGTATGTTGAATTG+TGG | + | chr5.2:5116613-5116632 | None:intergenic | 30.0% | |
| TAAGAAACTGGTGAAGAAAT+TGG | - | chr5.2:5116810-5116829 | MS.gene015407:intron | 30.0% | |
| TTATAGACATATACTTGGGA+TGG | + | chr5.2:5117545-5117564 | None:intergenic | 30.0% | |
| ! | AGCATGCAAATTTTCATCTT+TGG | + | chr5.2:5116005-5116024 | None:intergenic | 30.0% |
| ! | ATTTTACTCGATGTTATGAG+TGG | + | chr5.2:5117391-5117410 | None:intergenic | 30.0% |
| ! | CAAATTTTCATCTTTGGTCT+CGG | + | chr5.2:5115999-5116018 | None:intergenic | 30.0% |
| ! | CTTTGTTACCTTCTATTTTG+TGG | - | chr5.2:5117416-5117435 | MS.gene015407:intron | 30.0% |
| ! | TAACACTCAGTTGTACATTT+TGG | + | chr5.2:5117321-5117340 | None:intergenic | 30.0% |
| ! | TGTGTGAATTGCCATTTATT+TGG | - | chr5.2:5116270-5116289 | MS.gene015407:CDS | 30.0% |
| ! | TTTTCACTCAAACTGTTTGT+TGG | - | chr5.2:5116063-5116082 | MS.gene015407:intron | 30.0% |
| !! | CATAGTTTTTCAAACCAATC+TGG | + | chr5.2:5115926-5115945 | None:intergenic | 30.0% |
| !! | CTTCATTTTATTTAGCAACC+AGG | - | chr5.2:5117065-5117084 | MS.gene015407:intron | 30.0% |
| !! | TGTCTTTCATTTAGTCTTGA+TGG | - | chr5.2:5116629-5116648 | MS.gene015407:CDS | 30.0% |
| AAGTAATAGTCCGACATTAG+AGG | - | chr5.2:5117504-5117523 | MS.gene015407:CDS | 35.0% | |
| ACATTTCAGGCAGAGAAAAT+AGG | - | chr5.2:5116742-5116761 | MS.gene015407:intron | 35.0% | |
| AGACAAGTAGAATAAGAGAG+AGG | + | chr5.2:5115659-5115678 | None:intergenic | 35.0% | |
| CAAAAGGATAAACGTTTCAG+CGG | - | chr5.2:5115951-5115970 | MS.gene015407:intron | 35.0% | |
| CAATTCAGCAATAACTACCT+CGG | + | chr5.2:5116230-5116249 | None:intergenic | 35.0% | |
| CACTCTAATATGCACATTTC+AGG | - | chr5.2:5116729-5116748 | MS.gene015407:intron | 35.0% | |
| CAGAGAAAATAGGACTTGAT+TGG | - | chr5.2:5116752-5116771 | MS.gene015407:intron | 35.0% | |
| CATCATCACCACAAAATAGA+AGG | + | chr5.2:5117427-5117446 | None:intergenic | 35.0% | |
| GAAAATAGGACTTGATTGGA+TGG | - | chr5.2:5116756-5116775 | MS.gene015407:intron | 35.0% | |
| GACAAGTAGAATAAGAGAGA+GGG | + | chr5.2:5115658-5115677 | None:intergenic | 35.0% | |
| GAGTATGAACCAAAAACAGT+TGG | + | chr5.2:5117036-5117055 | None:intergenic | 35.0% | |
| GGCAAACTTTCAAATAAACC+TGG | + | chr5.2:5117086-5117105 | None:intergenic | 35.0% | |
| TATTACCTCCTCAACATGTT+GGG | + | chr5.2:5116036-5116055 | None:intergenic | 35.0% | |
| TCACCATATATGTTCTTCAG+TGG | - | chr5.2:5117669-5117688 | MS.gene015407:intron | 35.0% | |
| TGTCCTTGTTGAAAAAGAAC+TGG | - | chr5.2:5117350-5117369 | MS.gene015407:intron | 35.0% | |
| TTATTACCTCCTCAACATGT+TGG | + | chr5.2:5116037-5116056 | None:intergenic | 35.0% | |
| ! | AAACAGATTCCTCGTCTTTT+GGG | - | chr5.2:5116874-5116893 | MS.gene015407:intron | 35.0% |
| ! | CTGAAACGTTTATCCTTTTG+AGG | + | chr5.2:5115951-5115970 | None:intergenic | 35.0% |
| ! | TTGTGGTGATGATGAATCAT+TGG | - | chr5.2:5117433-5117452 | MS.gene015407:CDS | 35.0% |
| !! | AGCACCGAAATTTTGATAGA+AGG | + | chr5.2:5116206-5116225 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr5.2:5116449-5116468 | MS.gene015407:intron | 35.0% |
| !!! | GCTGATTTGGATATTTTGCA+TGG | - | chr5.2:5117142-5117161 | MS.gene015407:intron | 35.0% |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | + | chr5.2:5117356-5117375 | None:intergenic | 35.0% |
| AACAGCTTCAGAGGCTAAAA+AGG | + | chr5.2:5116851-5116870 | None:intergenic | 40.0% | |
| ACAAACACGAAACACTGACA+CGG | - | chr5.2:5116090-5116109 | MS.gene015407:intron | 40.0% | |
| AGAAGCTATTACCGGAATCA+TGG | - | chr5.2:5115854-5115873 | MS.gene015407:intron | 40.0% | |
| AGCAAATCCAAACAGACACT+TGG | - | chr5.2:5116584-5116603 | MS.gene015407:CDS | 40.0% | |
| AGCTGTTGGCAATGTTAGTA+TGG | - | chr5.2:5117279-5117298 | MS.gene015407:intron | 40.0% | |
| CACTCTATCAAACACGTGTT+CGG | + | chr5.2:5116176-5116195 | None:intergenic | 40.0% | |
| GAAGCTATTACCGGAATCAT+GGG | - | chr5.2:5115855-5115874 | MS.gene015407:intron | 40.0% | |
| GAGACTATTGAACTCCAGAT+TGG | - | chr5.2:5115909-5115928 | MS.gene015407:intron | 40.0% | |
| GCACCACTGAAGAACATATA+TGG | + | chr5.2:5117675-5117694 | None:intergenic | 40.0% | |
| GCTTATCTCAGCTTATCTAC+TGG | + | chr5.2:5116567-5116586 | None:intergenic | 40.0% | |
| TTGTATCTGAAGAGCTCCAT+GGG | - | chr5.2:5117792-5117811 | MS.gene015407:intron | 40.0% | |
| ! | CAAACAGATTCCTCGTCTTT+TGG | - | chr5.2:5116873-5116892 | MS.gene015407:intron | 40.0% |
| ! | CTGTTTGATAACAGCTTCAG+AGG | + | chr5.2:5116860-5116879 | None:intergenic | 40.0% |
| ! | GCAGGCATGTGTTTTCTTTT+GGG | - | chr5.2:5116913-5116932 | MS.gene015407:intron | 40.0% |
| ! | GTGTTTTCTTTTGGGCGTTT+TGG | - | chr5.2:5116921-5116940 | MS.gene015407:intron | 40.0% |
| ! | TGATTTTGCATCCAGAGCAT+AGG | - | chr5.2:5116655-5116674 | MS.gene015407:CDS | 40.0% |
| ! | TTTGGAATCACCCATGATTC+CGG | + | chr5.2:5115868-5115887 | None:intergenic | 40.0% |
| !! | CTCAAGAAAGTGTTGTGCAT+GGG | - | chr5.2:5117253-5117272 | MS.gene015407:intron | 40.0% |
| !! | GATATTTTGCATGGCTTTGC+AGG | - | chr5.2:5117151-5117170 | MS.gene015407:intron | 40.0% |
| !! | TGTAAACTGTTGCTGGTTTC+AGG | - | chr5.2:5117761-5117780 | MS.gene015407:intron | 40.0% |
| !!! | TCTTTTTCAACAAGGACACG+AGG | + | chr5.2:5117348-5117367 | None:intergenic | 40.0% |
| AGCCTCAAGAGATTCTTGGT+GGG | + | chr5.2:5117197-5117216 | None:intergenic | 45.0% | |
| ATAGTCCGACATTAGAGGAC+TGG | - | chr5.2:5117509-5117528 | MS.gene015407:CDS | 45.0% | |
| ATCTTTGGTCTCGGAATGTG+AGG | + | chr5.2:5115990-5116009 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | - | chr5.2:5117198-5117217 | MS.gene015407:intron | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | + | chr5.2:5117201-5117220 | None:intergenic | 45.0% | |
| CGAACACGTGTTTGATAGAG+TGG | - | chr5.2:5116174-5116193 | MS.gene015407:CDS | 45.0% | |
| CTTCAGAGGCTAAAAAGGCA+TGG | + | chr5.2:5116846-5116865 | None:intergenic | 45.0% | |
| CTTGGTGGGAAACAAGTGTA+GGG | + | chr5.2:5117183-5117202 | None:intergenic | 45.0% | |
| CTTGTATCTGAAGAGCTCCA+TGG | - | chr5.2:5117791-5117810 | MS.gene015407:intron | 45.0% | |
| GAAAGCCAGTCCTCTAATGT+CGG | + | chr5.2:5117517-5117536 | None:intergenic | 45.0% | |
| GACATCTTCACAAGGTTGTG+AGG | + | chr5.2:5117628-5117647 | None:intergenic | 45.0% | |
| GAGACTGTTGTATGCGACTT+AGG | - | chr5.2:5116343-5116362 | MS.gene015407:intron | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+CGG | - | chr5.2:5115846-5115865 | MS.gene015407:intron | 45.0% | |
| GGATAAACGTTTCAGCGGTT+CGG | - | chr5.2:5115956-5115975 | MS.gene015407:intron | 45.0% | |
| GTGGTTACCAAGTGTCTGTT+TGG | + | chr5.2:5116594-5116613 | None:intergenic | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | + | chr5.2:5117198-5117217 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGTGT+AGG | + | chr5.2:5117184-5117203 | None:intergenic | 45.0% | |
| TGCACAACACTTTCTTGAGC+TGG | + | chr5.2:5117252-5117271 | None:intergenic | 45.0% | |
| TGTGACATCTGACTCATACC+AGG | + | chr5.2:5116321-5116340 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | - | chr5.2:5117192-5117211 | MS.gene015407:intron | 45.0% | |
| ! | GGCAGGCATGTGTTTTCTTT+TGG | - | chr5.2:5116912-5116931 | MS.gene015407:intron | 45.0% |
| !! | ACTGTTGCTGGTTTCAGGTT+AGG | - | chr5.2:5117766-5117785 | MS.gene015407:intron | 45.0% |
| !! | GCTCAAGAAAGTGTTGTGCA+TGG | - | chr5.2:5117252-5117271 | MS.gene015407:intron | 45.0% |
| !! | TCAAAATTTCGGTGCTACCG+AGG | - | chr5.2:5116210-5116229 | MS.gene015407:CDS | 45.0% |
| GGCTAAGGTCAACGAGACTA+AGG | - | chr5.2:5117213-5117232 | MS.gene015407:intron | 50.0% | |
| GGTACTGCGACATCTTCACA+AGG | + | chr5.2:5117636-5117655 | None:intergenic | 50.0% | |
| GGTCAACGAGACTAAGGCTA+TGG | - | chr5.2:5117219-5117238 | MS.gene015407:intron | 50.0% | |
| TGATGCCCAACATGTTGAGG+AGG | - | chr5.2:5116028-5116047 | MS.gene015407:intron | 50.0% | |
| TTGTGCATGGGAGTAGCTGT+TGG | - | chr5.2:5117265-5117284 | MS.gene015407:intron | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | - | chr5.2:5116891-5116910 | MS.gene015407:intron | 50.0% | |
| ! | GACTCGGTAAGATTTGCCCA+TGG | + | chr5.2:5117811-5117830 | None:intergenic | 50.0% |
| ! | TGGTGATGCCCAACATGTTG+AGG | - | chr5.2:5116025-5116044 | MS.gene015407:intron | 50.0% |
| !! | ATTCCTCGTCTTTTGGGTCC+TGG | - | chr5.2:5116880-5116899 | MS.gene015407:intron | 50.0% |
| AGACCAGGACCCAAAAGACG+AGG | + | chr5.2:5116886-5116905 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | + | chr5.2:5116901-5116920 | None:intergenic | 55.0% |
| GGTCCTGGTCTCAACAAGGC+AGG | - | chr5.2:5116895-5116914 | MS.gene015407:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 5115636 | 5117836 | 5115636 | ID=MS.gene015407 |
| chr5.2 | mRNA | 5115636 | 5117836 | 5115636 | ID=MS.gene015407.t1;Parent=MS.gene015407 |
| chr5.2 | exon | 5117832 | 5117836 | 5117832 | ID=MS.gene015407.t1.exon1;Parent=MS.gene015407.t1 |
| chr5.2 | CDS | 5117832 | 5117836 | 5117832 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
| chr5.2 | exon | 5117423 | 5117642 | 5117423 | ID=MS.gene015407.t1.exon2;Parent=MS.gene015407.t1 |
| chr5.2 | CDS | 5117423 | 5117642 | 5117423 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
| chr5.2 | exon | 5116556 | 5116721 | 5116556 | ID=MS.gene015407.t1.exon3;Parent=MS.gene015407.t1 |
| chr5.2 | CDS | 5116556 | 5116721 | 5116556 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
| chr5.2 | exon | 5116094 | 5116299 | 5116094 | ID=MS.gene015407.t1.exon4;Parent=MS.gene015407.t1 |
| chr5.2 | CDS | 5116094 | 5116299 | 5116094 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
| chr5.2 | exon | 5115636 | 5115689 | 5115636 | ID=MS.gene015407.t1.exon5;Parent=MS.gene015407.t1 |
| chr5.2 | CDS | 5115636 | 5115689 | 5115636 | ID=cds.MS.gene015407.t1;Parent=MS.gene015407.t1 |
| Gene Sequence |
| Protein sequence |