Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82545.t1 | XP_003600923.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.30E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82545.t1 | Q8VZB9 | 88.9 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 3.8e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82545.t1 | B7FGL9 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 4.5e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene82545 | 0.867775 | 1.07E-65 | -1.69E-46 |
| MS.gene050252 | MS.gene82545 | 0.877506 | 5.95E-69 | -1.69E-46 |
| MS.gene050290 | MS.gene82545 | 0.834295 | 3.26E-56 | -1.69E-46 |
| MS.gene050791 | MS.gene82545 | 0.917893 | 3.05E-86 | -1.69E-46 |
| MS.gene050912 | MS.gene82545 | 0.868308 | 7.19E-66 | -1.69E-46 |
| MS.gene051904 | MS.gene82545 | 0.838138 | 3.44E-57 | -1.69E-46 |
| MS.gene051984 | MS.gene82545 | 0.805604 | 1.23E-49 | -1.69E-46 |
| MS.gene052057 | MS.gene82545 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene052412 | MS.gene82545 | 0.839033 | 2.02E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene82545 | 0.87153 | 6.37E-67 | -1.69E-46 |
| MS.gene057092 | MS.gene82545 | 0.84133 | 5.07E-58 | -1.69E-46 |
| MS.gene057272 | MS.gene82545 | 0.91948 | 4.27E-87 | -1.69E-46 |
| MS.gene057641 | MS.gene82545 | 0.803045 | 4.20E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene82545 | 0.844088 | 9.39E-59 | -1.69E-46 |
| MS.gene058994 | MS.gene82545 | 0.801874 | 7.33E-49 | -1.69E-46 |
| MS.gene059340 | MS.gene82545 | 0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene82545 | 0.802944 | 4.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43038 | MS.gene82545 | PPI |
| MS.gene031955 | MS.gene82545 | PPI |
| MS.gene21219 | MS.gene82545 | PPI |
| MS.gene09753 | MS.gene82545 | PPI |
| MS.gene008043 | MS.gene82545 | PPI |
| MS.gene09755 | MS.gene82545 | PPI |
| MS.gene82545 | MS.gene034454 | PPI |
| MS.gene034454 | MS.gene82545 | PPI |
| MS.gene84323 | MS.gene82545 | PPI |
| MS.gene35416 | MS.gene82545 | PPI |
| MS.gene82545 | MS.gene09755 | PPI |
| MS.gene015407 | MS.gene82545 | PPI |
| MS.gene82038 | MS.gene82545 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82545.t1 | MTR_3g070930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 8.64e-159 | 437 |
| MS.gene82545.t1 | MTR_2g086500 | 98.611 | 216 | 3 | 0 | 1 | 216 | 1 | 216 | 1.87e-157 | 434 |
| MS.gene82545.t1 | MTR_5g012930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene82545.t1 | MTR_3g070930 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.81e-90 | 261 |
| MS.gene82545.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.73e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82545.t1 | AT1G08360 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 1.71e-128 | 361 |
| MS.gene82545.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene82545.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene82545.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene82545.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene82545.t1 | AT2G42650 | 24.255 | 235 | 147 | 10 | 1 | 208 | 1 | 231 | 9.73e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 3.1:-58191196 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 3.1:+58190797 | MS.gene82545:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 3.1:+58188536 | MS.gene82545:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 3.1:-58190757 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 3.1:-58188540 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 3.1:-58188629 | None:intergenic |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 3.1:+58190680 | MS.gene82545:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 3.1:+58190671 | MS.gene82545:intron |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 3.1:+58191263 | MS.gene82545:CDS |
| ATATACCTCTTCGACGTGTT+GGG | 0.467119 | 3.1:-58188660 | None:intergenic |
| TATATACCTCTTCGACGTGT+TGG | 0.467153 | 3.1:-58188661 | None:intergenic |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 3.1:+58190666 | MS.gene82545:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 3.1:-58188614 | None:intergenic |
| CTTGTATCTGAAGAGTTCAA+TGG | 0.484688 | 3.1:+58191862 | MS.gene82545:CDS |
| TTGTATCTGAAGAGTTCAAT+GGG | 0.501469 | 3.1:+58191863 | MS.gene82545:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 3.1:+58191262 | MS.gene82545:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 3.1:+58191196 | MS.gene82545:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 3.1:+58188481 | MS.gene82545:CDS |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 3.1:-58190808 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 3.1:+58188473 | MS.gene82545:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 3.1:-58188623 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+CGG | 0.532764 | 3.1:+58188632 | MS.gene82545:CDS |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 3.1:-58191179 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 3.1:+58191238 | MS.gene82545:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 3.1:+58191250 | MS.gene82545:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 3.1:+58191251 | MS.gene82545:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 3.1:-58191178 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 3.1:+58191191 | MS.gene82545:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 3.1:+58190819 | MS.gene82545:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 3.1:+58190767 | MS.gene82545:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 3.1:-58188603 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 3.1:+58190815 | MS.gene82545:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 3.1:+58191217 | MS.gene82545:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 3.1:+58188451 | MS.gene82545:intron |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 3.1:-58190767 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 3.1:+58191277 | MS.gene82545:CDS |
| AGATGCCCAACACGTCGAAG+AGG | 0.614877 | 3.1:+58188655 | MS.gene82545:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 3.1:-58190809 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 3.1:+58191190 | MS.gene82545:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 3.1:-58190822 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 3.1:+58191211 | MS.gene82545:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 3.1:-58188622 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 3.1:-58191895 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 3.1:-58190807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAAAAAAAATATGAGA+TGG | - | chr3.1:58190037-58190056 | None:intergenic | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | - | chr3.1:58189071-58189090 | None:intergenic | 15.0% |
| !! | CAATAAACAAAACATTAAAT+TGG | - | chr3.1:58188718-58188737 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | chr3.1:58190498-58190517 | MS.gene82545:intron | 15.0% |
| !! | TGATTTCGTATATTATTAAA+TGG | + | chr3.1:58190491-58190510 | MS.gene82545:intron | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | + | chr3.1:58189090-58189109 | MS.gene82545:intron | 15.0% |
| !!! | AATTTTTTAACACTGATTTA+CGG | + | chr3.1:58191721-58191740 | MS.gene82545:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | chr3.1:58190996-58191015 | None:intergenic | 15.0% |
| !!! | TGTTTTATGAATATTCAATT+AGG | + | chr3.1:58190264-58190283 | MS.gene82545:intron | 15.0% |
| !!! | TTAAGTTTTTACTGTTTTAA+GGG | + | chr3.1:58188901-58188920 | MS.gene82545:intron | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+CGG | - | chr3.1:58189012-58189031 | None:intergenic | 20.0% |
| !! | AACAGTAAAAACTTAACAAA+TGG | - | chr3.1:58188897-58188916 | None:intergenic | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | - | chr3.1:58191048-58191067 | None:intergenic | 20.0% |
| !! | AGTGTTAAAAAATTTCAACT+AGG | - | chr3.1:58191715-58191734 | None:intergenic | 20.0% |
| !! | ATAAAATATACCTTTCAAAC+AGG | - | chr3.1:58191073-58191092 | None:intergenic | 20.0% |
| !! | ATGTAATATTCTAATCTCAT+TGG | - | chr3.1:58189039-58189058 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | chr3.1:58191109-58191128 | MS.gene82545:intron | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | chr3.1:58189250-58189269 | None:intergenic | 20.0% |
| !! | GTGTTAAAAAATTTCAACTA+GGG | - | chr3.1:58191714-58191733 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+GGG | - | chr3.1:58191072-58191091 | None:intergenic | 20.0% |
| !! | TGAATATTCATAAAACAGTT+TGG | - | chr3.1:58190261-58190280 | None:intergenic | 20.0% |
| !!! | ATTTTTTAACACTGATTTAC+GGG | + | chr3.1:58191722-58191741 | MS.gene82545:intron | 20.0% |
| !!! | GTTAAGTTTTTACTGTTTTA+AGG | + | chr3.1:58188900-58188919 | MS.gene82545:intron | 20.0% |
| !!! | TTTAGTTTTGCAAATTTTGT+TGG | + | chr3.1:58190330-58190349 | MS.gene82545:intron | 20.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | chr3.1:58191605-58191624 | MS.gene82545:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | chr3.1:58191606-58191625 | MS.gene82545:intron | 25.0% |
| ! | AAAACTTAACAAATGGATAG+TGG | - | chr3.1:58188890-58188909 | None:intergenic | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | + | chr3.1:58189093-58189112 | MS.gene82545:intron | 25.0% |
| ! | AAACAAACACTCTTTAAGTA+CGG | - | chr3.1:58189774-58189793 | None:intergenic | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | chr3.1:58189896-58189915 | MS.gene82545:intron | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | chr3.1:58188690-58188709 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | - | chr3.1:58190639-58190658 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | chr3.1:58191569-58191588 | None:intergenic | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | chr3.1:58189148-58189167 | MS.gene82545:intron | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | chr3.1:58189703-58189722 | None:intergenic | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | chr3.1:58189243-58189262 | None:intergenic | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | - | chr3.1:58190148-58190167 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | chr3.1:58189716-58189735 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAAAACTAAAC+TGG | - | chr3.1:58190329-58190348 | None:intergenic | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+CGG | - | chr3.1:58191766-58191785 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | chr3.1:58190722-58190741 | MS.gene82545:CDS | 25.0% |
| ! | GGAAGTTAAAAACAAAGATA+AGG | - | chr3.1:58190308-58190327 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | chr3.1:58189244-58189263 | None:intergenic | 25.0% |
| ! | TGATACAATGCTTTCAAAAT+AGG | + | chr3.1:58188744-58188763 | MS.gene82545:intron | 25.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | chr3.1:58188348-58188367 | None:intergenic | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | chr3.1:58191150-58191169 | MS.gene82545:intron | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | chr3.1:58190715-58190734 | None:intergenic | 25.0% |
| !! | GGAAATATGAATCGATTTAT+TGG | - | chr3.1:58188327-58188346 | None:intergenic | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | chr3.1:58190860-58190879 | MS.gene82545:intron | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | chr3.1:58191149-58191168 | MS.gene82545:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | chr3.1:58189920-58189939 | MS.gene82545:intron | 25.0% |
| !!! | ACTTAAAGAGTGTTTGTTTT+TGG | + | chr3.1:58189775-58189794 | MS.gene82545:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | chr3.1:58191101-58191120 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | chr3.1:58189494-58189513 | None:intergenic | 25.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | chr3.1:58189994-58190013 | None:intergenic | 30.0% | |
| AAAAACCCAATTCAACAGAA+GGG | - | chr3.1:58189633-58189652 | None:intergenic | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | chr3.1:58190882-58190901 | None:intergenic | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | - | chr3.1:58191555-58191574 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | - | chr3.1:58191583-58191602 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | - | chr3.1:58190143-58190162 | None:intergenic | 30.0% | |
| ATCACAAACCAAACCAAAAA+AGG | + | chr3.1:58189283-58189302 | MS.gene82545:intron | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | - | chr3.1:58190023-58190042 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | chr3.1:58189704-58189723 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | chr3.1:58188976-58188995 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | chr3.1:58190069-58190088 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | chr3.1:58190423-58190442 | MS.gene82545:intron | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | chr3.1:58190076-58190095 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | - | chr3.1:58191578-58191597 | None:intergenic | 30.0% | |
| TCACAAACCAAACCAAAAAA+GGG | + | chr3.1:58189284-58189303 | MS.gene82545:intron | 30.0% | |
| TCTTGTGTAAAAACAAGGTA+AGG | - | chr3.1:58189384-58189403 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | chr3.1:58188976-58188995 | MS.gene82545:intron | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | - | chr3.1:58190424-58190443 | None:intergenic | 30.0% | |
| TTACGCTACATAGATATATC+TGG | + | chr3.1:58188848-58188867 | MS.gene82545:intron | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | chr3.1:58188975-58188994 | None:intergenic | 30.0% | |
| TTGTATCTGAAGAGTTCAAT+GGG | + | chr3.1:58191863-58191882 | MS.gene82545:CDS | 30.0% | |
| TTGTGCAACGATGAAATAAA+AGG | - | chr3.1:58191389-58191408 | None:intergenic | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | + | chr3.1:58189828-58189847 | MS.gene82545:intron | 30.0% | |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | chr3.1:58188513-58188532 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | chr3.1:58189924-58189943 | MS.gene82545:intron | 30.0% |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | chr3.1:58189909-58189928 | None:intergenic | 30.0% |
| ! | ATAACTTGCACAAAAAAGAG+AGG | - | chr3.1:58191440-58191459 | None:intergenic | 30.0% |
| ! | GAATATTCAATTAGGTGTTG+TGG | + | chr3.1:58190272-58190291 | MS.gene82545:intron | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | chr3.1:58188577-58188596 | None:intergenic | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | chr3.1:58188426-58188445 | MS.gene82545:intron | 30.0% |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | chr3.1:58191774-58191793 | MS.gene82545:intron | 30.0% |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | chr3.1:58189499-58189518 | None:intergenic | 30.0% |
| !!! | TTACCTTGTTTTTACACAAG+AGG | + | chr3.1:58189383-58189402 | MS.gene82545:intron | 30.0% |
| !!! | TTGGTTTGGTTTGTTTTTGA+GGG | - | chr3.1:58189480-58189499 | None:intergenic | 30.0% |
| AACCAAACCCTTAGATGAAA+AGG | - | chr3.1:58189554-58189573 | None:intergenic | 35.0% | |
| AAGCACTTATCCCTAATTTG+AGG | - | chr3.1:58191619-58191638 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | chr3.1:58190653-58190672 | MS.gene82545:intron | 35.0% | |
| AATGAATTGCCCTGTTTGAA+AGG | + | chr3.1:58191060-58191079 | MS.gene82545:intron | 35.0% | |
| ACAAATGACTAGGCAAAAAC+TGG | - | chr3.1:58190629-58190648 | None:intergenic | 35.0% | |
| ACCAAACCCTTAGATGAAAA+GGG | - | chr3.1:58189553-58189572 | None:intergenic | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | chr3.1:58188632-58188651 | None:intergenic | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | chr3.1:58191468-58191487 | MS.gene82545:intron | 35.0% | |
| CAAAAAGATAAGCGTTTCAG+TGG | + | chr3.1:58188578-58188597 | MS.gene82545:CDS | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | chr3.1:58191794-58191813 | None:intergenic | 35.0% | |
| CTTGTATCTGAAGAGTTCAA+TGG | + | chr3.1:58191862-58191881 | MS.gene82545:CDS | 35.0% | |
| GAAAAACCCAATTCAACAGA+AGG | - | chr3.1:58189634-58189653 | None:intergenic | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | chr3.1:58188536-58188555 | MS.gene82545:CDS | 35.0% | |
| GGTGAAATTTCAGCTAAAGA+AGG | + | chr3.1:58191238-58191257 | MS.gene82545:CDS | 35.0% | |
| GTTTGTGATTTAGAGGAAAG+TGG | - | chr3.1:58189272-58189291 | None:intergenic | 35.0% | |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | chr3.1:58191348-58191367 | MS.gene82545:CDS | 35.0% | |
| TGACAAATAAGTACGACAGT+AGG | + | chr3.1:58190552-58190571 | MS.gene82545:intron | 35.0% | |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | chr3.1:58188451-58188470 | MS.gene82545:intron | 35.0% | |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | chr3.1:58190798-58190817 | MS.gene82545:CDS | 35.0% |
| ! | AAGATGAAGCTTTGTATGCT+CGG | + | chr3.1:58188632-58188651 | MS.gene82545:CDS | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | chr3.1:58188578-58188597 | None:intergenic | 35.0% |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | chr3.1:58190680-58190699 | MS.gene82545:CDS | 35.0% |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | chr3.1:58189923-58189942 | MS.gene82545:intron | 35.0% |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | chr3.1:58188543-58188562 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | chr3.1:58190797-58190816 | MS.gene82545:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | chr3.1:58190760-58190779 | None:intergenic | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | chr3.1:58189939-58189958 | MS.gene82545:intron | 35.0% |
| !! | GATAACCTACTGTTGATTTC+AGG | + | chr3.1:58191832-58191851 | MS.gene82545:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | chr3.1:58190444-58190463 | MS.gene82545:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | chr3.1:58189945-58189964 | MS.gene82545:intron | 35.0% |
| !! | TAGCACCACCGATTTATATT+AGG | - | chr3.1:58189101-58189120 | None:intergenic | 35.0% |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | chr3.1:58189279-58189298 | None:intergenic | 35.0% |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | chr3.1:58189555-58189574 | MS.gene82545:intron | 35.0% |
| !!! | GTTGGTTTGGTTTGTTTTTG+AGG | - | chr3.1:58189481-58189500 | None:intergenic | 35.0% |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | chr3.1:58191346-58191365 | None:intergenic | 35.0% |
| !!! | TGGTTTGGTTTGTTTTTGAG+GGG | - | chr3.1:58189479-58189498 | None:intergenic | 35.0% |
| AAAGCTTCATCTTAGGACGA+GGG | - | chr3.1:58188625-58188644 | None:intergenic | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | chr3.1:58189625-58189644 | MS.gene82545:intron | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | chr3.1:58190666-58190685 | MS.gene82545:intron | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | chr3.1:58189517-58189536 | MS.gene82545:intron | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | chr3.1:58188481-58188500 | MS.gene82545:CDS | 40.0% | |
| ATATACCTCTTCGACGTGTT+GGG | - | chr3.1:58188663-58188682 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | chr3.1:58189979-58189998 | None:intergenic | 40.0% | |
| ATGACTAGGCAAAAACTGGA+AGG | - | chr3.1:58190625-58190644 | None:intergenic | 40.0% | |
| CACTGATCCAATTTCTGATG+GGG | + | chr3.1:58189798-58189817 | MS.gene82545:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+AGG | - | chr3.1:58189389-58189408 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.1:58189358-58189377 | None:intergenic | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | chr3.1:58190841-58190860 | MS.gene82545:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | chr3.1:58189624-58189643 | MS.gene82545:intron | 40.0% | |
| TATATACCTCTTCGACGTGT+TGG | - | chr3.1:58188664-58188683 | None:intergenic | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | chr3.1:58190667-58190686 | None:intergenic | 40.0% | |
| TCAAGATCTGAGCTTCTTGT+TGG | - | chr3.1:58189517-58189536 | None:intergenic | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | chr3.1:58191191-58191210 | MS.gene82545:CDS | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | chr3.1:58189808-58189827 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | chr3.1:58190458-58190477 | MS.gene82545:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | chr3.1:58189797-58189816 | MS.gene82545:intron | 40.0% |
| !! | ACAAATGGATAGTGGAAGCA+TGG | - | chr3.1:58188882-58188901 | None:intergenic | 40.0% |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | chr3.1:58191837-58191856 | MS.gene82545:intron | 40.0% |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | chr3.1:58191354-58191373 | None:intergenic | 40.0% |
| !!! | TTGTTTTTGAGGGGTAACCT+TGG | - | chr3.1:58189470-58189489 | None:intergenic | 40.0% |
| AAGGAAAATCAGATGGGAGC+AGG | - | chr3.1:58189697-58189716 | None:intergenic | 45.0% | |
| ACCCTTAGATGAAAAGGGCT+TGG | - | chr3.1:58189548-58189567 | None:intergenic | 45.0% | |
| AGGAAAATCAGATGGGAGCA+GGG | - | chr3.1:58189696-58189715 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | chr3.1:58188606-58188625 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | chr3.1:58188617-58188636 | None:intergenic | 45.0% | |
| CAAACCAAAAAAGGGCAACC+CGG | + | chr3.1:58189292-58189311 | MS.gene82545:intron | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | chr3.1:58188626-58188645 | None:intergenic | 45.0% | |
| CATGCTAGCATTTCACCGAA+GGG | - | chr3.1:58191486-58191505 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | chr3.1:58191196-58191215 | MS.gene82545:CDS | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | chr3.1:58190767-58190786 | MS.gene82545:CDS | 45.0% | |
| CCGAACCTGAAATCAACAGT+AGG | - | chr3.1:58191840-58191859 | None:intergenic | 45.0% | |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | chr3.1:58190770-58190789 | None:intergenic | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | chr3.1:58191199-58191218 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | chr3.1:58191190-58191209 | MS.gene82545:CDS | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | chr3.1:58189545-58189564 | None:intergenic | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | chr3.1:58191181-58191200 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.1:58189359-58189378 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.1:58189362-58189381 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | + | chr3.1:58189202-58189221 | MS.gene82545:intron | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | chr3.1:58191211-58191230 | MS.gene82545:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | chr3.1:58191217-58191236 | MS.gene82545:CDS | 45.0% | |
| GTTGTTGTCATGTGACCGTA+AGG | - | chr3.1:58189434-58189453 | None:intergenic | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | chr3.1:58191487-58191506 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | chr3.1:58191182-58191201 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | - | chr3.1:58191535-58191554 | None:intergenic | 45.0% |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | chr3.1:58189544-58189563 | MS.gene82545:intron | 45.0% |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | chr3.1:58189549-58189568 | MS.gene82545:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3.1:58189394-58189413 | MS.gene82545:intron | 45.0% |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | chr3.1:58191251-58191270 | MS.gene82545:CDS | 45.0% |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | chr3.1:58189796-58189815 | MS.gene82545:intron | 45.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | chr3.1:58191277-58191296 | MS.gene82545:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | chr3.1:58190835-58190854 | MS.gene82545:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3.1:58189450-58189469 | MS.gene82545:intron | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr3.1:58189416-58189435 | MS.gene82545:intron | 50.0% | |
| GCAGGCAGAGAAGATAGGTT+TGG | + | chr3.1:58190671-58190690 | MS.gene82545:intron | 50.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | chr3.1:58188473-58188492 | MS.gene82545:CDS | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr3.1:58189428-58189447 | None:intergenic | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr3.1:58189427-58189446 | None:intergenic | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | chr3.1:58190812-58190831 | None:intergenic | 50.0% | |
| TTTGCTGAGCTGAGAGAGCA+GGG | + | chr3.1:58189181-58189200 | MS.gene82545:intron | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr3.1:58190815-58190834 | MS.gene82545:CDS | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | chr3.1:58189543-58189562 | MS.gene82545:intron | 50.0% |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | + | chr3.1:58189180-58189199 | MS.gene82545:intron | 50.0% |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | chr3.1:58191250-58191269 | MS.gene82545:CDS | 50.0% |
| !!! | CGGGTTGCCCTTTTTTGGTT+TGG | - | chr3.1:58189294-58189313 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3.1:58189415-58189434 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr3.1:58189318-58189337 | MS.gene82545:intron | 55.0% | |
| AGAATGAGAGAGGCCTCGAG+TGG | + | chr3.1:58189212-58189231 | MS.gene82545:intron | 55.0% | |
| AGACCAGGACCCAAAAGACG+GGG | - | chr3.1:58190810-58190829 | None:intergenic | 55.0% | |
| AGATGCCCAACACGTCGAAG+AGG | + | chr3.1:58188655-58188674 | MS.gene82545:CDS | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | chr3.1:58189965-58189984 | MS.gene82545:intron | 55.0% | |
| CTCTGCATGGGAGTAGCTGT+GGG | + | chr3.1:58191263-58191282 | MS.gene82545:CDS | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr3.1:58189319-58189338 | MS.gene82545:intron | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | chr3.1:58189213-58189232 | MS.gene82545:intron | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | chr3.1:58190811-58190830 | None:intergenic | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | chr3.1:58189228-58189247 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr3.1:58190825-58190844 | None:intergenic | 55.0% |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | chr3.1:58190804-58190823 | MS.gene82545:CDS | 55.0% |
| !!! | TGCACCGGGTTGCCCTTTTT+TGG | - | chr3.1:58189299-58189318 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3.1:58189461-58189480 | None:intergenic | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3.1:58189314-58189333 | None:intergenic | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr3.1:58189331-58189350 | MS.gene82545:intron | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr3.1:58189331-58189350 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr3.1:58189330-58189349 | MS.gene82545:intron | 60.0% | |
| GCTCTGCATGGGAGTAGCTG+TGG | + | chr3.1:58191262-58191281 | MS.gene82545:CDS | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr3.1:58190819-58190838 | MS.gene82545:CDS | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr3.1:58189330-58189349 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3.1:58189346-58189365 | None:intergenic | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr3.1:58189329-58189348 | MS.gene82545:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.1:58189344-58189363 | MS.gene82545:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr3.1:58189325-58189344 | MS.gene82545:intron | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr3.1:58189324-58189343 | MS.gene82545:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3.1:58189313-58189332 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58188310 | 58191907 | 58188310 | ID=MS.gene82545 |
| chr3.1 | mRNA | 58188310 | 58191907 | 58188310 | ID=MS.gene82545.t1;Parent=MS.gene82545 |
| chr3.1 | exon | 58188310 | 58188314 | 58188310 | ID=MS.gene82545.t1.exon1;Parent=MS.gene82545.t1 |
| chr3.1 | CDS | 58188310 | 58188314 | 58188310 | ID=cds.MS.gene82545.t1;Parent=MS.gene82545.t1 |
| chr3.1 | exon | 58188457 | 58188676 | 58188457 | ID=MS.gene82545.t1.exon2;Parent=MS.gene82545.t1 |
| chr3.1 | CDS | 58188457 | 58188676 | 58188457 | ID=cds.MS.gene82545.t1;Parent=MS.gene82545.t1 |
| chr3.1 | exon | 58190675 | 58190840 | 58190675 | ID=MS.gene82545.t1.exon3;Parent=MS.gene82545.t1 |
| chr3.1 | CDS | 58190675 | 58190840 | 58190675 | ID=cds.MS.gene82545.t1;Parent=MS.gene82545.t1 |
| chr3.1 | exon | 58191171 | 58191376 | 58191171 | ID=MS.gene82545.t1.exon4;Parent=MS.gene82545.t1 |
| chr3.1 | CDS | 58191171 | 58191376 | 58191171 | ID=cds.MS.gene82545.t1;Parent=MS.gene82545.t1 |
| chr3.1 | exon | 58191854 | 58191907 | 58191854 | ID=MS.gene82545.t1.exon5;Parent=MS.gene82545.t1 |
| chr3.1 | CDS | 58191854 | 58191907 | 58191854 | ID=cds.MS.gene82545.t1;Parent=MS.gene82545.t1 |
| Gene Sequence |
| Protein sequence |
