AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84323

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84323.t1 MTR_2g086500 100.000 216 0 0 1 216 1 216 3.83e-159 438
MS.gene84323.t1 MTR_5g012930 99.074 216 2 0 1 216 1 216 5.64e-158 436
MS.gene84323.t1 MTR_3g070930 98.611 216 3 0 1 216 1 216 1.87e-157 434
MS.gene84323.t1 MTR_3g070930 97.692 130 3 0 1 130 1 130 1.64e-89 260
MS.gene84323.t1 MTR_1g098350 72.527 91 4 1 39 129 47 116 2.30e-20 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84323.t1 AT1G08360 89.815 216 22 0 1 216 1 216 7.05e-130 365
MS.gene84323.t1 AT2G27530 89.352 216 23 0 1 216 1 216 3.57e-129 363
MS.gene84323.t1 AT2G27530 89.352 216 23 0 1 216 1 216 3.57e-129 363
MS.gene84323.t1 AT5G22440 89.862 217 21 1 1 216 1 217 8.15e-128 359
MS.gene84323.t1 AT5G22440 89.862 217 21 1 1 216 1 217 8.15e-128 359

Find 46 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACACTCAGTTGTACATTT+TGG 0.245739 2.2:+12107603 None:intergenic
TAAGCAAATTCCTCGGCTTT+TGG 0.248004 2.2:-12108203 MS.gene84323:CDS
TAAGAAACTGGTGAAGAAAT+TGG 0.278623 2.2:-12108266 MS.gene84323:CDS
CCTTGGCCTCAAGAGATTCT+TGG 0.283166 2.2:+12107723 None:intergenic
AACAGCTTCAGAAGCTAAAA+AGG 0.292055 2.2:+12108228 None:intergenic
AAGCATGCAAATCTTCATCT+TGG 0.411943 2.2:+12108882 None:intergenic
ATACTGTAGGCTGAGAAAAT+AGG 0.420144 2.2:-12108334 MS.gene84323:intron
CTGGAACTTGACCATGGCCT+TGG 0.431931 2.2:+12107691 None:intergenic
GGCCTTGGTCTCATTTACCT+TGG 0.435008 2.2:+12107706 None:intergenic
GCTGTGAGAGAAGCTATTAC+AGG 0.444577 2.2:-12109039 MS.gene84323:CDS
AGCTGTTGGCAATGTCAGTA+TGG 0.454854 2.2:-12107642 MS.gene84323:CDS
TGCACAGCACTTTCTTAAGC+TGG 0.456962 2.2:+12107672 None:intergenic
GAGACTATTGAACTCCAGAT+TGG 0.463448 2.2:-12108976 MS.gene84323:CDS
CGTAGTTCTTAAGACCAATC+TGG 0.467027 2.2:+12108962 None:intergenic
AAGATGAAGATTTGCATGCT+TGG 0.474267 2.2:-12108880 MS.gene84323:CDS
AGCATGCAAATCTTCATCTT+GGG 0.497546 2.2:+12108883 None:intergenic
TAAGAACTACGACCCACAAA+AGG 0.507014 2.2:-12108950 MS.gene84323:CDS
AGAAGCTATTACAGGAATCA+TGG 0.507152 2.2:-12109031 MS.gene84323:CDS
CTTGTATCTCAAAAGTTCCA+TGG 0.508906 2.2:-12107019 MS.gene84323:CDS
GTAGGCTGAGAAAATAGGAT+TGG 0.517891 2.2:-12108329 MS.gene84323:intron
CCAAGAATCTCTTGAGGCCA+AGG 0.518576 2.2:-12107723 MS.gene84323:CDS
CTTGGTGGGAAACAAGAGTT+GGG 0.519768 2.2:+12107741 None:intergenic
TCTTGGTGGGAAACAAGAGT+TGG 0.522569 2.2:+12107740 None:intergenic
GAAAATAGGATTGGAATCGA+TGG 0.526298 2.2:-12108320 MS.gene84323:CDS
AGGAATCATGGCTGATTCCA+AGG 0.534020 2.2:-12109019 MS.gene84323:CDS
TGGCCTCAAGAGATTCTTGG+TGG 0.549788 2.2:+12107726 None:intergenic
CAAATCTTCATCTTGGGTCG+AGG 0.562426 2.2:+12108889 None:intergenic
GGTCCTGGTCTCAACAAGGC+AGG 0.563119 2.2:-12108181 MS.gene84323:intron
CTGTTATTAAGCAAATTCCT+CGG 0.572203 2.2:-12108210 MS.gene84323:CDS
TTTGGGTCCTGGTCTCAACA+AGG 0.572628 2.2:-12108185 MS.gene84323:CDS
GCTTAAGAAAGTGCTGTGCA+TGG 0.574345 2.2:-12107669 MS.gene84323:CDS
CTTAAGAAAGTGCTGTGCAT+GGG 0.577992 2.2:-12107668 MS.gene84323:CDS
CTTAAGCTGGAACTTGACCA+TGG 0.589652 2.2:+12107685 None:intergenic
TTGTATCTCAAAAGTTCCAT+GGG 0.590539 2.2:-12107018 MS.gene84323:CDS
CAAAAGGATAAGCGTTTCAG+TGG 0.592129 2.2:-12108934 MS.gene84323:CDS
ATCTTGGGTCGAGGAATGTG+AGG 0.608945 2.2:+12108898 None:intergenic
GGCCTCAAGAGATTCTTGGT+GGG 0.614704 2.2:+12107727 None:intergenic
TGGAGATGCTCAGCATGTTG+AGG 0.621445 2.2:-12108860 MS.gene84323:CDS
GGTAAATGAGACCAAGGCCA+TGG 0.622898 2.2:-12107702 MS.gene84323:CDS
ATGCCTGCCTTGTTGAGACC+AGG 0.624246 2.2:+12108178 None:intergenic
AGATGCTCAGCATGTTGAGG+AGG 0.663333 2.2:-12108857 MS.gene84323:intron
TTCCCACCAAGAATCTCTTG+AGG 0.663873 2.2:-12107729 MS.gene84323:CDS
GGCCAAGGTAAATGAGACCA+AGG 0.664747 2.2:-12107708 MS.gene84323:CDS
CTGTGCATGGGAGTAGCTGT+TGG 0.665133 2.2:-12107656 MS.gene84323:CDS
AGACCAGGACCCAAAAGCCG+AGG 0.667775 2.2:+12108193 None:intergenic
GACACGGTAAGATTTGCCCA+TGG 0.686850 2.2:+12107002 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATTATAAAACATATTT+CGG + chr2.2:12107208-12107227 None:intergenic 10.0%
!! ATATTTAGAAAAATCTCTAT+TGG - chr2.2:12107875-12107894 MS.gene84323:intron 15.0%
!! ATTAATTGAAAGTAAACAAT+GGG - chr2.2:12107356-12107375 MS.gene84323:intron 15.0%
!! CAAATTAAATAAATATTCCA+AGG + chr2.2:12109381-12109400 None:intergenic 15.0%
!! CTTGGAATATTTATTTAATT+TGG - chr2.2:12109379-12109398 MS.gene84323:intron 15.0%
!! TATTAATTGAAAGTAAACAA+TGG - chr2.2:12107355-12107374 MS.gene84323:intron 15.0%
!! TTTACTCTAACAAAATAAAA+TGG + chr2.2:12109044-12109063 None:intergenic 15.0%
!!! ATATGTATAGAATGTTTTTA+GGG - chr2.2:12108433-12108452 MS.gene84323:intron 15.0%
!!! TATATGTATAGAATGTTTTT+AGG - chr2.2:12108432-12108451 MS.gene84323:intron 15.0%
!!! TGTTTTATAATAGAACATTA+TGG - chr2.2:12107213-12107232 MS.gene84323:intron 15.0%
!! AACTAAAACAGTATTTACTA+CGG + chr2.2:12109214-12109233 None:intergenic 20.0%
!! TTAATTGAAAGTAAACAATG+GGG - chr2.2:12107357-12107376 MS.gene84323:intron 20.0%
!!! AAAATTGAAACTTGATAACA+AGG + chr2.2:12109295-12109314 None:intergenic 20.0%
!!! ATTGACTTATTTTCTGAAAT+AGG - chr2.2:12107808-12107827 MS.gene84323:intron 20.0%
!!! CTATTTGATTTGATTTTTGT+TGG - chr2.2:12107777-12107796 MS.gene84323:intron 20.0%
!!! TGTCTTTAATTTAGTTTTGA+TGG - chr2.2:12108027-12108046 MS.gene84323:intron 20.0%
!!! TTTTATTCTTTTGGGTTTTT+TGG - chr2.2:12108320-12108339 MS.gene84323:CDS 20.0%
! AAAAGTTTACATTAGATGGA+TGG + chr2.2:12109414-12109433 None:intergenic 25.0%
! AAGCTAAGAAAATGTGAAAA+TGG + chr2.2:12107025-12107044 None:intergenic 25.0%
! AATGTAAGTATTTCATACCA+TGG - chr2.2:12108927-12108946 MS.gene84323:CDS 25.0%
! AATTCAAAAGGAACATGTTA+TGG + chr2.2:12108653-12108672 None:intergenic 25.0%
! ACGTCAAAACATAAAATAGA+CGG + chr2.2:12108974-12108993 None:intergenic 25.0%
! ATATTATGTCATGTGAAAGA+AGG + chr2.2:12107859-12107878 None:intergenic 25.0%
! ATATTTACCCATCAAGAAAT+TGG + chr2.2:12108501-12108520 None:intergenic 25.0%
! CAACAAAAGTTTACATTAGA+TGG + chr2.2:12109418-12109437 None:intergenic 25.0%
! GCTAAACAAAAATAAGAAAC+TGG - chr2.2:12108194-12108213 MS.gene84323:CDS 25.0%
! TACTTGATTGAGAAACTATT+AGG - chr2.2:12107157-12107176 MS.gene84323:intron 25.0%
! TTTCAACAAAAGGTTATTTG+AGG + chr2.2:12109261-12109280 None:intergenic 25.0%
!! CAATAGTCTCAACAAATTTT+CGG + chr2.2:12107486-12107505 None:intergenic 25.0%
!! CATCTAATGTAAACTTTTGT+TGG - chr2.2:12109416-12109435 MS.gene84323:intron 25.0%
!!! GCATTTTTTATTGAAGAGTT+TGG - chr2.2:12109235-12109254 MS.gene84323:intron 25.0%
AAAAATATCCAAATCAGCCT+AGG + chr2.2:12108691-12108710 None:intergenic 30.0%
AAAGCAATGACTTTAATCCA+TGG + chr2.2:12108947-12108966 None:intergenic 30.0%
AATTGTAAGACACCAAAATG+AGG + chr2.2:12107748-12107767 None:intergenic 30.0%
ATTGTAAGACACCAAAATGA+GGG + chr2.2:12107747-12107766 None:intergenic 30.0%
CTAACTAAACGAAAAAGAAG+CGG + chr2.2:12108610-12108629 None:intergenic 30.0%
CTGTTATTAAGCAAATTCCT+CGG - chr2.2:12108262-12108281 MS.gene84323:CDS 30.0%
GGCAATAACTGAAATTCAAA+AGG + chr2.2:12108665-12108684 None:intergenic 30.0%
TAACAGTATGTTTGAACACA+AGG + chr2.2:12108563-12108582 None:intergenic 30.0%
TAACTAAACGAAAAAGAAGC+GGG + chr2.2:12108609-12108628 None:intergenic 30.0%
TAAGAAACTGGTGAAGAAAT+TGG - chr2.2:12108206-12108225 MS.gene84323:CDS 30.0%
TATCCTTGTTGAAAAAGAAC+TGG - chr2.2:12108901-12108920 MS.gene84323:CDS 30.0%
TGTATCCAACAAAAACAGTT+TGG + chr2.2:12107660-12107679 None:intergenic 30.0%
TTGGATGATGAGCAATAATA+GGG - chr2.2:12109009-12109028 MS.gene84323:CDS 30.0%
TTGTATCTCAAAAGTTCCAT+GGG - chr2.2:12109454-12109473 MS.gene84323:intron 30.0%
TTTGGATGATGAGCAATAAT+AGG - chr2.2:12109008-12109027 MS.gene84323:CDS 30.0%
! AAATTTTCGGTTTTTCTCCT+TGG + chr2.2:12107473-12107492 None:intergenic 30.0%
! ACTGCTACATTTTCAACAAA+AGG + chr2.2:12109271-12109290 None:intergenic 30.0%
! AGTCTTTGACTTTAGATTAC+AGG - chr2.2:12109175-12109194 MS.gene84323:intron 30.0%
! TAAATCAATTTTGTCAGTCG+TGG + chr2.2:12107984-12108003 None:intergenic 30.0%
! TTGTTTACTCTTAAGTTGCT+AGG + chr2.2:12108535-12108554 None:intergenic 30.0%
!! AGGCATGTGTTTTATTCTTT+TGG - chr2.2:12108311-12108330 MS.gene84323:CDS 30.0%
!! CAAGCTTTTTCCCAATAAAT+GGG + chr2.2:12107262-12107281 None:intergenic 30.0%
!! GACATCAATTTGTTGATTTG+TGG + chr2.2:12108011-12108030 None:intergenic 30.0%
!! GGCATGTGTTTTATTCTTTT+GGG - chr2.2:12108312-12108331 MS.gene84323:CDS 30.0%
!!! TGTAAACTTTTGTTGGTTTC+AGG - chr2.2:12109423-12109442 MS.gene84323:intron 30.0%
AACAGCTTCAGAAGCTAAAA+AGG + chr2.2:12108247-12108266 None:intergenic 35.0%
AACTAAACGAAAAAGAAGCG+GGG + chr2.2:12108608-12108627 None:intergenic 35.0%
AAGATGAAGATTTGCATGCT+TGG - chr2.2:12107592-12107611 MS.gene84323:CDS 35.0%
AAGCATGCAAATCTTCATCT+TGG + chr2.2:12107593-12107612 None:intergenic 35.0%
AGAAGCTATTACAGGAATCA+TGG - chr2.2:12107441-12107460 MS.gene84323:intron 35.0%
AGCATGCAAATCTTCATCTT+GGG + chr2.2:12107592-12107611 None:intergenic 35.0%
ATACTGTAGGCTGAGAAAAT+AGG - chr2.2:12108138-12108157 MS.gene84323:intron 35.0%
ATGTAAACTTGAATACAGCC+AGG + chr2.2:12108459-12108478 None:intergenic 35.0%
CACGTCAAACTGTAAATAGA+CGG + chr2.2:12109082-12109101 None:intergenic 35.0%
CACTCTAATATGCATACTGT+AGG - chr2.2:12108125-12108144 MS.gene84323:intron 35.0%
CCATTTATTGGGAAAAAGCT+TGG - chr2.2:12107260-12107279 MS.gene84323:intron 35.0%
CTTGTATCTCAAAAGTTCCA+TGG - chr2.2:12109453-12109472 MS.gene84323:intron 35.0%
GAAAATAGGATTGGAATCGA+TGG - chr2.2:12108152-12108171 MS.gene84323:intron 35.0%
GACTTTAGATTACAGGCAAT+AGG - chr2.2:12109182-12109201 MS.gene84323:intron 35.0%
TCAAAAGGAACATGTTATGG+CGG + chr2.2:12108650-12108669 None:intergenic 35.0%
TCTATTTACAGTTTGACGTG+TGG - chr2.2:12109082-12109101 MS.gene84323:intron 35.0%
TTGGAGGAAGAACAATAACA+GGG - chr2.2:12109116-12109135 MS.gene84323:intron 35.0%
TTTGGAGGAAGAACAATAAC+AGG - chr2.2:12109115-12109134 MS.gene84323:intron 35.0%
! ACTAAAGCACTATTGCTTAG+CGG - chr2.2:12107921-12107940 MS.gene84323:intron 35.0%
! CTTTTTCCCAATAAATGGGT+CGG + chr2.2:12107258-12107277 None:intergenic 35.0%
! GTGCATTATTACCCTCATTT+TGG - chr2.2:12107733-12107752 MS.gene84323:CDS 35.0%
! TGAAACGCTTATCCTTTTGT+GGG + chr2.2:12107537-12107556 None:intergenic 35.0%
! TGACACTCAGTTGTACATTT+TGG + chr2.2:12108872-12108891 None:intergenic 35.0%
! TTGTCATTGTTGAGTTTGCT+TGG - chr2.2:12107295-12107314 MS.gene84323:intron 35.0%
!! CCAAGCTTTTTCCCAATAAA+TGG + chr2.2:12107263-12107282 None:intergenic 35.0%
!!! ACTTTTGTTGGTTTCAGGTT+AGG - chr2.2:12109428-12109447 MS.gene84323:intron 35.0%
!!! TATAGAATGTTTTTAGGGCC+TGG - chr2.2:12108438-12108457 MS.gene84323:intron 35.0%
!!! TCTTTTTCAACAAGGATACG+AGG + chr2.2:12108899-12108918 None:intergenic 35.0%
!!! TGTAGCCAAACTGTTTTTGT+TGG - chr2.2:12107652-12107671 MS.gene84323:CDS 35.0%
!!! TTGCCAGTTCTTTTTCAACA+AGG + chr2.2:12108907-12108926 None:intergenic 35.0%
ACACCTCACCAATTTCTTGA+TGG - chr2.2:12108490-12108509 MS.gene84323:intron 40.0%
ACGTGATGCATCATTGGATT+TGG - chr2.2:12108990-12109009 MS.gene84323:CDS 40.0%
AGAAAGATGCACAAAACACG+TGG + chr2.2:12108406-12108425 None:intergenic 40.0%
ATCAAGAAATTGGTGAGGTG+TGG + chr2.2:12108491-12108510 None:intergenic 40.0%
CAAAAGGATAAGCGTTTCAG+TGG - chr2.2:12107538-12107557 MS.gene84323:intron 40.0%
CACCTCACCAATTTCTTGAT+GGG - chr2.2:12108491-12108510 MS.gene84323:intron 40.0%
CGTAGTTCTTAAGACCAATC+TGG + chr2.2:12107513-12107532 None:intergenic 40.0%
CTTCAGAAGCTAAAAAGGCA+TGG + chr2.2:12108242-12108261 None:intergenic 40.0%
GAAAGATGCACAAAACACGT+GGG + chr2.2:12108405-12108424 None:intergenic 40.0%
GAGACTATTGAACTCCAGAT+TGG - chr2.2:12107496-12107515 MS.gene84323:intron 40.0%
GGATACACGTGTAGTTGAAA+TGG - chr2.2:12107673-12107692 MS.gene84323:CDS 40.0%
GTAGGCTGAGAAAATAGGAT+TGG - chr2.2:12108143-12108162 MS.gene84323:intron 40.0%
GTTTACATTAGATGGATGGC+AGG + chr2.2:12109410-12109429 None:intergenic 40.0%
TAAGAACTACGACCCACAAA+AGG - chr2.2:12107522-12107541 MS.gene84323:intron 40.0%
TACCCATCAAGAAATTGGTG+AGG + chr2.2:12108496-12108515 None:intergenic 40.0%
TCAAGAAATTGGTGAGGTGT+GGG + chr2.2:12108490-12108509 None:intergenic 40.0%
TTTCAGTTATTGCCTTGCCT+AGG - chr2.2:12108671-12108690 MS.gene84323:intron 40.0%
! AAGCAAATTCCTCGGCTTTT+GGG - chr2.2:12108270-12108289 MS.gene84323:CDS 40.0%
! CTGAAACGCTTATCCTTTTG+TGG + chr2.2:12107538-12107557 None:intergenic 40.0%
! TAAGCAAATTCCTCGGCTTT+TGG - chr2.2:12108269-12108288 MS.gene84323:CDS 40.0%
!! CTTAAGAAAGTGCTGTGCAT+GGG - chr2.2:12108804-12108823 MS.gene84323:intron 40.0%
!! GTTTTGACGTGATGCATCAT+TGG - chr2.2:12108984-12109003 MS.gene84323:CDS 40.0%
!!! GATATTTTTTGTCCCTCTGC+AGG - chr2.2:12108702-12108721 MS.gene84323:intron 40.0%
AAACGAAAAAGAAGCGGGGT+TGG + chr2.2:12108604-12108623 None:intergenic 45.0%
AATCTCTATTGGTCCGCGAT+AGG - chr2.2:12107886-12107905 MS.gene84323:intron 45.0%
ACGTGTGGCATCATTGGATT+TGG - chr2.2:12109097-12109116 MS.gene84323:intron 45.0%
AGCTGTTGGCAATGTCAGTA+TGG - chr2.2:12108830-12108849 MS.gene84323:intron 45.0%
AGTTTGACGTGTGGCATCAT+TGG - chr2.2:12109091-12109110 MS.gene84323:intron 45.0%
CAAATCTTCATCTTGGGTCG+AGG + chr2.2:12107586-12107605 None:intergenic 45.0%
CTTAAGCTGGAACTTGACCA+TGG + chr2.2:12108790-12108809 None:intergenic 45.0%
CTTGGTGGGAAACAAGAGTT+GGG + chr2.2:12108734-12108753 None:intergenic 45.0%
GCTGTGAGAGAAGCTATTAC+AGG - chr2.2:12107433-12107452 MS.gene84323:intron 45.0%
GTGTAGCCGACCCATTTATT+GGG - chr2.2:12107249-12107268 MS.gene84323:intron 45.0%
TATCCAAATCAGCCTAGGCA+AGG + chr2.2:12108686-12108705 None:intergenic 45.0%
TCTTGGTGGGAAACAAGAGT+TGG + chr2.2:12108735-12108754 None:intergenic 45.0%
TGCACAGCACTTTCTTAAGC+TGG + chr2.2:12108803-12108822 None:intergenic 45.0%
TGCCACTAAATAGCCTATCG+CGG + chr2.2:12107902-12107921 None:intergenic 45.0%
TGTGGCATCATTGGATTTGG+AGG - chr2.2:12109100-12109119 MS.gene84323:intron 45.0%
TGTGTAGCCGACCCATTTAT+TGG - chr2.2:12107248-12107267 MS.gene84323:intron 45.0%
TTCCCACCAAGAATCTCTTG+AGG - chr2.2:12108743-12108762 MS.gene84323:intron 45.0%
! AGGAATCATGGCTGATTCCA+AGG - chr2.2:12107453-12107472 MS.gene84323:intron 45.0%
!! GCTTAAGAAAGTGCTGTGCA+TGG - chr2.2:12108803-12108822 MS.gene84323:intron 45.0%
AGATGCTCAGCATGTTGAGG+AGG - chr2.2:12107615-12107634 MS.gene84323:CDS 50.0%
AGTTGGGAACTTTCCTGCAG+AGG + chr2.2:12108718-12108737 None:intergenic 50.0%
ATCTTGGGTCGAGGAATGTG+AGG + chr2.2:12107577-12107596 None:intergenic 50.0%
CCAAGAATCTCTTGAGGCCA+AGG - chr2.2:12108749-12108768 MS.gene84323:intron 50.0%
CCTTGGCCTCAAGAGATTCT+TGG + chr2.2:12108752-12108771 None:intergenic 50.0%
GACACGGTAAGATTTGCCCA+TGG + chr2.2:12109473-12109492 None:intergenic 50.0%
GGCCAAGGTAAATGAGACCA+AGG - chr2.2:12108764-12108783 MS.gene84323:intron 50.0%
GGCCTCAAGAGATTCTTGGT+GGG + chr2.2:12108748-12108767 None:intergenic 50.0%
GGCCTTGGTCTCATTTACCT+TGG + chr2.2:12108769-12108788 None:intergenic 50.0%
GGTAAATGAGACCAAGGCCA+TGG - chr2.2:12108770-12108789 MS.gene84323:intron 50.0%
GTCCGCGATAGGCTATTTAG+TGG - chr2.2:12107897-12107916 MS.gene84323:intron 50.0%
GTTGGGAACTTTCCTGCAGA+GGG + chr2.2:12108717-12108736 None:intergenic 50.0%
TGCTCTTCTGTTCTCTGCCT+TGG - chr2.2:12109361-12109380 MS.gene84323:intron 50.0%
TGGAGATGCTCAGCATGTTG+AGG - chr2.2:12107612-12107631 MS.gene84323:CDS 50.0%
TGGCCTCAAGAGATTCTTGG+TGG + chr2.2:12108749-12108768 None:intergenic 50.0%
TTGCCTTGCCTAGGCTGATT+TGG - chr2.2:12108680-12108699 MS.gene84323:intron 50.0%
TTTGGGTCCTGGTCTCAACA+AGG - chr2.2:12108287-12108306 MS.gene84323:CDS 50.0%
CGAAAAAGAAGCGGGGTTGG+CGG + chr2.2:12108601-12108620 None:intergenic 55.0%
CTGGAACTTGACCATGGCCT+TGG + chr2.2:12108784-12108803 None:intergenic 55.0%
CTGTGCATGGGAGTAGCTGT+TGG - chr2.2:12108816-12108835 MS.gene84323:intron 55.0%
! ATGCCTGCCTTGTTGAGACC+AGG + chr2.2:12108297-12108316 None:intergenic 55.0%
!! ATTCCTCGGCTTTTGGGTCC+TGG - chr2.2:12108276-12108295 MS.gene84323:CDS 55.0%
AGACCAGGACCCAAAAGCCG+AGG + chr2.2:12108282-12108301 None:intergenic 60.0%
GGTCCTGGTCTCAACAAGGC+AGG - chr2.2:12108291-12108310 MS.gene84323:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 12106996 12109498 12106996 ID=MS.gene84323
chr2.2 mRNA 12106996 12109498 12106996 ID=MS.gene84323.t1;Parent=MS.gene84323
chr2.2 exon 12109494 12109498 12109494 ID=MS.gene84323.t1.exon1;Parent=MS.gene84323.t1
chr2.2 CDS 12109494 12109498 12109494 ID=cds.MS.gene84323.t1;Parent=MS.gene84323.t1
chr2.2 exon 12108858 12109077 12108858 ID=MS.gene84323.t1.exon2;Parent=MS.gene84323.t1
chr2.2 CDS 12108858 12109077 12108858 ID=cds.MS.gene84323.t1;Parent=MS.gene84323.t1
chr2.2 exon 12108182 12108347 12108182 ID=MS.gene84323.t1.exon3;Parent=MS.gene84323.t1
chr2.2 CDS 12108182 12108347 12108182 ID=cds.MS.gene84323.t1;Parent=MS.gene84323.t1
chr2.2 exon 12107565 12107770 12107565 ID=MS.gene84323.t1.exon4;Parent=MS.gene84323.t1
chr2.2 CDS 12107565 12107770 12107565 ID=cds.MS.gene84323.t1;Parent=MS.gene84323.t1
chr2.2 exon 12106996 12107049 12106996 ID=MS.gene84323.t1.exon5;Parent=MS.gene84323.t1
chr2.2 CDS 12106996 12107049 12106996 ID=cds.MS.gene84323.t1;Parent=MS.gene84323.t1
Gene Sequence

>MS.gene84323

ATGAGGTATTTTTTTCTTCTATTTGTCCATTTTCACATTTTCTTAGCTTTTTTTCTTCATAAAGTTATATACAATTTGTTGTTTTTCATTGATAATTTAACTTTAGTTCTATTAGCTTTTGATCGTGTTAGTGAAAATAATTCAATAATTGTTGTTTTTCTTACTTGATTGAGAAACTATTAGGAAAGATTTGAAAACTAATGAGTTGACCGAAATATGTTTTATAATAGAACATTATGGCGTAATTTGATCTGTGTAGCCGACCCATTTATTGGGAAAAAGCTTGGTTGTTGTTTTTGTTGTCATTGTTGAGTTTGCTTGGTTTAATGTATTTATGATTTATATTGTGTTAATGAAAGTATTAATTGAAAGTAAACAATGGGGTACTTAAAGATTTAATGTTTTTGATGTGACTTTGCAGTAAGCTTCAAAGTGAAGCTGTGAGAGAAGCTATTACAGGAATCATGGCTGATTCCAAGGAGAAAAACCGAAAATTTGTTGAGACTATTGAACTCCAGATTGGTCTTAAGAACTACGACCCACAAAAGGATAAGCGTTTCAGTGGTTCTGTCAAATTGCCTCACATTCCTCGACCCAAGATGAAGATTTGCATGCTTGGAGATGCTCAGCATGTTGAGGAGGTAATGATTTGATGTTGTAGCCAAACTGTTTTTGTTGGATACACGTGTAGTTGAAATGGTTAATGCTTGATTGAAGTGAATTTGAGTTTCAAATGTGTGCATTATTACCCTCATTTTGGTGTCTTACAATTTATTTTGTGCTATTTGATTTGATTTTTGTTGGTTGCTAGTATTGACTTATTTTCTGAAATAGGCTGAAACGATGACATAATATTTTTGCCTTCTTTCACATGACATAATATTTAGAAAAATCTCTATTGGTCCGCGATAGGCTATTTAGTGGCACTAAAGCACTATTGCTTAGCGGAATTTTAGCAATCTGCTATTTTCTGCTATACACGAGTCCACGACTGACAAAATTGATTTAGTAACCACAAATCAACAAATTGATGTCTTTAATTTAGTTTTGATGGTAGTGATTTTGCATTATGTGCTGAAGATCATTTTGAATATTTGTTTGTTGCTAAGTTTCTTGTGTTAATGTCTTACACTCTAATATGCATACTGTAGGCTGAGAAAATAGGATTGGAATCGATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTTATTAAGCAAATTCCTCGGCTTTTGGGTCCTGGTCTCAACAAGGCAGGCATGTGTTTTATTCTTTTGGGTTTTTTGGATTTTATTATTATTATCATCATCATCTGTTTTGCATTGCTGTCTTTTTCTTTATACTTTCCCACGTGTTTTGTGCATCTTTCTTGTTTCTATATGTATAGAATGTTTTTAGGGCCTGGCTGTATTCAAGTTTACATTGTGTTCACCCACACCTCACCAATTTCTTGATGGGTAAATATCAGTCAGATTGCCTAGCAACTTAAGAGTAAACAATTGTGCCTTGTGTTCAAACATACTGTTACATTACTTTAAAGAACCGCCAACCCCGCTTCTTTTTCGTTTAGTTAGCAGCTTATTTCAAAGAACCGCCATAACATGTTCCTTTTGAATTTCAGTTATTGCCTTGCCTAGGCTGATTTGGATATTTTTTGTCCCTCTGCAGGAAAGTTCCCAACTCTTGTTTCCCACCAAGAATCTCTTGAGGCCAAGGTAAATGAGACCAAGGCCATGGTCAAGTTCCAGCTTAAGAAAGTGCTGTGCATGGGAGTAGCTGTTGGCAATGTCAGTATGGATGAAAAACAAATCTTCCAAAATGTACAACTGAGTGTCAACTTCCTCGTATCCTTGTTGAAAAAGAACTGGCAAAATGTAAGTATTTCATACCATGGATTAAAGTCATTGCTTTGTTACCGTCTATTTTATGTTTTGACGTGATGCATCATTGGATTTGGATGATGAGCAATAATAGGGCTATAACATCCATTTTATTTTGTTAGAGTAAAATCATTGCTTTGTTACCGTCTATTTACAGTTTGACGTGTGGCATCATTGGATTTGGAGGAAGAACAATAACAGGGCTATAACATACATTTTATTGTGTTATTTAAAGTAATAGTCTTTGACTTTAGATTACAGGCAATAGGCAAAATCCGTAGTAAATACTGTTTTAGTTTGCATTTTTTATTGAAGAGTTTGGCCTCAAATAACCTTTTGTTGAAAATGTAGCAGTACCTTGTTATCAAGTTTCAATTTTCACAATTTATGTTCTTTAGTTGTGCTCGAGTCTTGAGAATTGTTTTTGCTCTTCTGTTCTCTGCCTTGGAATATTTATTTAATTTGGTTGAACCTGCCATCCATCTAATGTAAACTTTTGTTGGTTTCAGGTTAGGTGCTTGTATCTCAAAAGTTCCATGGGCAAATCTTACCGTGTCTTTTAA
Protein sequence

>MS.gene84323.t1

MSKLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF