Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09755.t1 | XP_003611340.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 2.10E-113 | 418.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09755.t1 | Q8VZB9 | 89.8 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 1.6e-104 | 380.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09755.t1 | G7JXE1 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 1.5e-113 | 418.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050574 | MS.gene09755 | 0.838312 | 3.10E-57 | -1.69E-46 |
| MS.gene050916 | MS.gene09755 | 0.823299 | 1.49E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene09755 | 0.819634 | 1.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82038 | MS.gene09755 | PPI |
| MS.gene43038 | MS.gene09755 | PPI |
| MS.gene015407 | MS.gene09755 | PPI |
| MS.gene031955 | MS.gene09755 | PPI |
| MS.gene09755 | MS.gene034454 | PPI |
| MS.gene034454 | MS.gene09755 | PPI |
| MS.gene09755 | MS.gene82545 | PPI |
| MS.gene008043 | MS.gene09755 | PPI |
| MS.gene21219 | MS.gene09755 | PPI |
| MS.gene09753 | MS.gene09755 | PPI |
| MS.gene82545 | MS.gene09755 | PPI |
| MS.gene84323 | MS.gene09755 | PPI |
| MS.gene35416 | MS.gene09755 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09755.t1 | MTR_5g012930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 2.31e-159 | 439 |
| MS.gene09755.t1 | MTR_2g086500 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 5.64e-158 | 436 |
| MS.gene09755.t1 | MTR_3g070930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene09755.t1 | MTR_3g070930 | 96.154 | 130 | 5 | 0 | 1 | 130 | 1 | 130 | 2.95e-88 | 257 |
| MS.gene09755.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.79e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09755.t1 | AT1G08360 | 89.815 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 3.38e-130 | 365 |
| MS.gene09755.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 1.87e-129 | 363 |
| MS.gene09755.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 1.87e-129 | 363 |
| MS.gene09755.t1 | AT5G22440 | 89.401 | 217 | 22 | 1 | 1 | 216 | 1 | 217 | 5.49e-127 | 357 |
| MS.gene09755.t1 | AT5G22440 | 89.401 | 217 | 22 | 1 | 1 | 216 | 1 | 217 | 5.49e-127 | 357 |
Find 44 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACTCAGTTGTACATTT+TGG | 0.198216 | 5.4:-6849024 | None:intergenic |
| CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 5.4:+6848595 | MS.gene09755:CDS |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 5.4:+6848532 | MS.gene09755:CDS |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 5.4:-6848904 | None:intergenic |
| AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 5.4:-6848570 | None:intergenic |
| CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 5.4:-6847603 | None:intergenic |
| CTTGGAATCACCCATGATTC+CGG | 0.395102 | 5.4:-6847572 | None:intergenic |
| AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 5.4:+6848985 | MS.gene09755:CDS |
| AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 5.4:+6847561 | MS.gene09755:CDS |
| AAGATGAAAATTTGCATGCT+TGG | 0.446340 | 5.4:+6847712 | MS.gene09755:CDS |
| ATATTGTAGGCTGAGAAAAT+AGG | 0.447267 | 5.4:+6848464 | MS.gene09755:intron |
| TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 5.4:-6848955 | None:intergenic |
| TATTACCTCCTCAACATGTT+GGG | 0.453017 | 5.4:-6847740 | None:intergenic |
| GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 5.4:+6847663 | MS.gene09755:CDS |
| GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 5.4:+6847616 | MS.gene09755:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 5.4:+6848904 | MS.gene09755:CDS |
| GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 5.4:+6847553 | MS.gene09755:CDS |
| CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 5.4:-6848579 | None:intergenic |
| CGGAATCATGGGTGATTCCA+AGG | 0.521957 | 5.4:+6847573 | MS.gene09755:CDS |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 5.4:+6848478 | MS.gene09755:CDS |
| CTTGTATCTGAAGAGCTCCA+TGG | 0.531354 | 5.4:+6849499 | MS.gene09755:CDS |
| TTATTACCTCCTCAACATGT+TGG | 0.532530 | 5.4:-6847741 | None:intergenic |
| ATCTTTGGTCTCGGAATGTG+AGG | 0.537988 | 5.4:-6847694 | None:intergenic |
| TTGTATCTGAAGAGCTCCAT+GGG | 0.538115 | 5.4:+6849500 | MS.gene09755:CDS |
| GGCTAAGGTTAACGAGACTA+AGG | 0.542276 | 5.4:+6848919 | MS.gene09755:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 5.4:+6848469 | MS.gene09755:intron |
| GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 5.4:+6847562 | MS.gene09755:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 5.4:+6848617 | MS.gene09755:CDS |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 5.4:-6848901 | None:intergenic |
| CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 5.4:+6848959 | MS.gene09755:CDS |
| GGTTAACGAGACTAAGGCTA+TGG | 0.565310 | 5.4:+6848925 | MS.gene09755:CDS |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 5.4:+6848613 | MS.gene09755:CDS |
| GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 5.4:+6848958 | MS.gene09755:CDS |
| TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 5.4:-6848887 | None:intergenic |
| CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 5.4:-6848886 | None:intergenic |
| AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 5.4:-6849532 | None:intergenic |
| TGGTGATGCCCAACATGTTG+AGG | 0.623552 | 5.4:+6847732 | MS.gene09755:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 5.4:-6848620 | None:intergenic |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 5.4:-6848900 | None:intergenic |
| CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 5.4:+6847658 | MS.gene09755:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 5.4:+6848898 | MS.gene09755:CDS |
| TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 5.4:+6848971 | MS.gene09755:CDS |
| AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 5.4:-6848605 | None:intergenic |
| TGATGCCCAACATGTTGAGG+AGG | 0.714764 | 5.4:+6847735 | MS.gene09755:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAGCACAAAAATAAA+TGG | - | chr5.4:6847990-6848009 | None:intergenic | 15.0% |
| !!! | CATTTTTATCAAATCATTAT+CGG | - | chr5.4:6847828-6847847 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGTGCTATATTT+TGG | + | chr5.4:6847990-6848009 | MS.gene09755:intron | 15.0% |
| !! | AATAGATTACATTAATTCGA+TGG | - | chr5.4:6849460-6849479 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGCTTAAAAAA+AGG | - | chr5.4:6847395-6847414 | None:intergenic | 20.0% |
| !! | TACTAACATAAAACATAAAC+AGG | - | chr5.4:6848706-6848725 | None:intergenic | 20.0% |
| !!! | TAACTGAGATTTGATTTATA+TGG | + | chr5.4:6847462-6847481 | MS.gene09755:intron | 20.0% |
| !!! | TTTAAATTACCAACTGTTTT+TGG | + | chr5.4:6848748-6848767 | MS.gene09755:intron | 20.0% |
| ! | AAACATAAACAGGATATATG+TGG | - | chr5.4:6848696-6848715 | None:intergenic | 25.0% |
| ! | ATTAGTATGTTGTTGAATTG+TGG | - | chr5.4:6848332-6848351 | None:intergenic | 25.0% |
| ! | GAATTAATGTAATCTATTGC+TGG | + | chr5.4:6849462-6849481 | MS.gene09755:intron | 25.0% |
| ! | GATGTTATAGACATATACTT+GGG | - | chr5.4:6849258-6849277 | None:intergenic | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | + | chr5.4:6848520-6848539 | MS.gene09755:CDS | 25.0% |
| ! | TATGGTGAAAATTGAAAACA+AGG | - | chr5.4:6849365-6849384 | None:intergenic | 25.0% |
| ! | TGATGTTATAGACATATACT+TGG | - | chr5.4:6849259-6849278 | None:intergenic | 25.0% |
| ! | TGCTAAATAAAATGAAGCAA+CGG | - | chr5.4:6848786-6848805 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGACACTGTT+TGG | - | chr5.4:6848262-6848281 | None:intergenic | 25.0% |
| !! | TTTTCACCATATATGTTCTT+CGG | + | chr5.4:6849374-6849393 | MS.gene09755:intron | 25.0% |
| !!! | CTGCTTTAGAATAAATAATC+TGG | + | chr5.4:6849431-6849450 | MS.gene09755:intron | 25.0% |
| !!! | TGTCTTTCATTTAGTTTTGA+TGG | + | chr5.4:6848351-6848370 | MS.gene09755:intron | 25.0% |
| AAGATGAAAATTTGCATGCT+TGG | + | chr5.4:6847712-6847731 | MS.gene09755:CDS | 30.0% | |
| AATGCCTTCTATCAAAATGT+CGG | + | chr5.4:6847905-6847924 | MS.gene09755:intron | 30.0% | |
| ATATTGTAGGCTGAGAAAAT+AGG | + | chr5.4:6848464-6848483 | MS.gene09755:intron | 30.0% | |
| ATTGGATGATGAGCAATAAT+AGG | + | chr5.4:6849157-6849176 | MS.gene09755:intron | 30.0% | |
| CAATAGTCTCCACAAATTTA+CGG | - | chr5.4:6847606-6847625 | None:intergenic | 30.0% | |
| CACTCTAATATGCATATTGT+AGG | + | chr5.4:6848451-6848470 | MS.gene09755:intron | 30.0% | |
| GAAAAACTATGATCCTCAAA+AGG | + | chr5.4:6847642-6847661 | MS.gene09755:CDS | 30.0% | |
| TAAGAAACTGGTGAAGAAAT+TGG | + | chr5.4:6848532-6848551 | MS.gene09755:CDS | 30.0% | |
| TGTTGAATTGTGGTTACTAA+GGG | - | chr5.4:6848322-6848341 | None:intergenic | 30.0% | |
| TTATAGACATATACTTGGGA+TGG | - | chr5.4:6849254-6849273 | None:intergenic | 30.0% | |
| TTGTTGAATTGTGGTTACTA+AGG | - | chr5.4:6848323-6848342 | None:intergenic | 30.0% | |
| ! | AAATTTACGGTTTTTCTCCT+TGG | - | chr5.4:6847593-6847612 | None:intergenic | 30.0% |
| ! | AGCATGCAAATTTTCATCTT+TGG | - | chr5.4:6847712-6847731 | None:intergenic | 30.0% |
| ! | ATTTTACTCGATGTTATGAG+TGG | - | chr5.4:6849097-6849116 | None:intergenic | 30.0% |
| ! | CAAATTTTCATCTTTGGTCT+CGG | - | chr5.4:6847706-6847725 | None:intergenic | 30.0% |
| ! | CTTTGTTACCTTCTATTTTG+TGG | + | chr5.4:6849122-6849141 | MS.gene09755:intron | 30.0% |
| ! | TAACACTCAGTTGTACATTT+TGG | - | chr5.4:6849027-6849046 | None:intergenic | 30.0% |
| !! | CATAGTTTTTCAAACCAATC+TGG | - | chr5.4:6847633-6847652 | None:intergenic | 30.0% |
| !! | CTTCATTTTATTTAGCAACC+AGG | + | chr5.4:6848789-6848808 | MS.gene09755:intron | 30.0% |
| AAGTAATAGTCCGACATTAG+AGG | + | chr5.4:6849213-6849232 | MS.gene09755:intron | 35.0% | |
| AGACAAGTAGAATAAGAGAG+AGG | - | chr5.4:6847362-6847381 | None:intergenic | 35.0% | |
| AGCTCAAGCAACAATTGAAA+TGG | - | chr5.4:6848831-6848850 | None:intergenic | 35.0% | |
| CAAAAAAATATCCCATGCTC+CGG | - | chr5.4:6848391-6848410 | None:intergenic | 35.0% | |
| CAAAAGGATAAACGTTTCAG+CGG | + | chr5.4:6847658-6847677 | MS.gene09755:CDS | 35.0% | |
| CAATTCAGCAATAACTACCT+CGG | - | chr5.4:6847936-6847955 | None:intergenic | 35.0% | |
| CATCATCACCACAAAATAGA+AGG | - | chr5.4:6849133-6849152 | None:intergenic | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | + | chr5.4:6848478-6848497 | MS.gene09755:CDS | 35.0% | |
| GACAAGTAGAATAAGAGAGA+GGG | - | chr5.4:6847361-6847380 | None:intergenic | 35.0% | |
| GAGTATGAACCAAAAACAGT+TGG | - | chr5.4:6848760-6848779 | None:intergenic | 35.0% | |
| GGAGAAAAACCGTAAATTTG+TGG | + | chr5.4:6847594-6847613 | MS.gene09755:CDS | 35.0% | |
| GGCAAACTTTCAAATAAACC+TGG | - | chr5.4:6848810-6848829 | None:intergenic | 35.0% | |
| TATTACCTCCTCAACATGTT+GGG | - | chr5.4:6847743-6847762 | None:intergenic | 35.0% | |
| TGTCCTTGTTGAAAAAGAAC+TGG | + | chr5.4:6849056-6849075 | MS.gene09755:CDS | 35.0% | |
| TTATTACCTCCTCAACATGT+TGG | - | chr5.4:6847744-6847763 | None:intergenic | 35.0% | |
| ! | AAACAGATTCCTCGTCTTTT+GGG | + | chr5.4:6848596-6848615 | MS.gene09755:CDS | 35.0% |
| ! | AATTGTTGCTTGAGCTGATT+TGG | + | chr5.4:6848835-6848854 | MS.gene09755:intron | 35.0% |
| ! | CTGAAACGTTTATCCTTTTG+AGG | - | chr5.4:6847658-6847677 | None:intergenic | 35.0% |
| ! | GATATTTTGCATGGCTTTTC+AGG | + | chr5.4:6848857-6848876 | MS.gene09755:intron | 35.0% |
| ! | TTGTGGTGATGATGAATCAT+TGG | + | chr5.4:6849139-6849158 | MS.gene09755:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr5.4:6848168-6848187 | MS.gene09755:intron | 35.0% |
| !! | TGTAATCTATTGCTGGTTTC+AGG | + | chr5.4:6849469-6849488 | MS.gene09755:intron | 35.0% |
| !!! | GATGGTATTGATTTTGCATC+CGG | + | chr5.4:6848369-6848388 | MS.gene09755:intron | 35.0% |
| !!! | GCTGATTTGGATATTTTGCA+TGG | + | chr5.4:6848848-6848867 | MS.gene09755:intron | 35.0% |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | - | chr5.4:6849062-6849081 | None:intergenic | 35.0% |
| AACAGCTTCAGAGGCTAAAA+AGG | - | chr5.4:6848573-6848592 | None:intergenic | 40.0% | |
| ACAAACACGAAACACTGACA+CGG | + | chr5.4:6847797-6847816 | MS.gene09755:intron | 40.0% | |
| AGAAGCTATTACCGGAATCA+TGG | + | chr5.4:6847561-6847580 | MS.gene09755:CDS | 40.0% | |
| AGCTGTTGGCAATGTTAGTA+TGG | + | chr5.4:6848985-6849004 | MS.gene09755:CDS | 40.0% | |
| CACTCTATCAAACACGTGTT+CGG | - | chr5.4:6847882-6847901 | None:intergenic | 40.0% | |
| GAAATCCAGTCCTCTAATGT+CGG | - | chr5.4:6849226-6849245 | None:intergenic | 40.0% | |
| GAAGCTATTACCGGAATCAT+GGG | + | chr5.4:6847562-6847581 | MS.gene09755:CDS | 40.0% | |
| GAGACTATTGAACTCCAGAT+TGG | + | chr5.4:6847616-6847635 | MS.gene09755:CDS | 40.0% | |
| GATACTGTTGTATGCGACTT+AGG | + | chr5.4:6848063-6848082 | MS.gene09755:intron | 40.0% | |
| GCTTATCTGAGCTTATCTAC+TGG | - | chr5.4:6848286-6848305 | None:intergenic | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | + | chr5.4:6848469-6848488 | MS.gene09755:intron | 40.0% | |
| GTTGCACTCAAACTGTTTGT+TGG | + | chr5.4:6847770-6847789 | MS.gene09755:intron | 40.0% | |
| TCACCATATATGTTCTTCGG+TGG | + | chr5.4:6849377-6849396 | MS.gene09755:intron | 40.0% | |
| TGTGTCATCTGACTCATATC+AGG | - | chr5.4:6848041-6848060 | None:intergenic | 40.0% | |
| TTGTATCTGAAGAGCTCCAT+GGG | + | chr5.4:6849500-6849519 | MS.gene09755:CDS | 40.0% | |
| ! | CAAACAGATTCCTCGTCTTT+TGG | + | chr5.4:6848595-6848614 | MS.gene09755:CDS | 40.0% |
| ! | CTGTTTGATAACAGCTTCAG+AGG | - | chr5.4:6848582-6848601 | None:intergenic | 40.0% |
| ! | GCAGGCATGTGTTTTCTTTT+GGG | + | chr5.4:6848635-6848654 | MS.gene09755:intron | 40.0% |
| ! | GTGTTTTCTTTTGGGCGTTT+TGG | + | chr5.4:6848643-6848662 | MS.gene09755:intron | 40.0% |
| !! | CTCAAGAAAGTGTTGTGCAT+GGG | + | chr5.4:6848959-6848978 | MS.gene09755:CDS | 40.0% |
| !! | TCTATTGCTGGTTTCAGGTT+AGG | + | chr5.4:6849474-6849493 | MS.gene09755:intron | 40.0% |
| !!! | AGCACCGACATTTTGATAGA+AGG | - | chr5.4:6847912-6847931 | None:intergenic | 40.0% |
| !!! | TCTTTTTCAACAAGGACACG+AGG | - | chr5.4:6849054-6849073 | None:intergenic | 40.0% |
| AGCCTCAAGAGATTCTTGGT+GGG | - | chr5.4:6848903-6848922 | None:intergenic | 45.0% | |
| ATAGTCCGACATTAGAGGAC+TGG | + | chr5.4:6849218-6849237 | MS.gene09755:intron | 45.0% | |
| ATCTTTGGTCTCGGAATGTG+AGG | - | chr5.4:6847697-6847716 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | + | chr5.4:6848904-6848923 | MS.gene09755:CDS | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | - | chr5.4:6848907-6848926 | None:intergenic | 45.0% | |
| CGAACACGTGTTTGATAGAG+TGG | + | chr5.4:6847880-6847899 | MS.gene09755:intron | 45.0% | |
| CTTCAGAGGCTAAAAAGGCA+TGG | - | chr5.4:6848568-6848587 | None:intergenic | 45.0% | |
| CTTGGAATCACCCATGATTC+CGG | - | chr5.4:6847575-6847594 | None:intergenic | 45.0% | |
| CTTGGTGGGAAACAAGTGTA+GGG | - | chr5.4:6848889-6848908 | None:intergenic | 45.0% | |
| CTTGTATCTGAAGAGCTCCA+TGG | + | chr5.4:6849499-6849518 | MS.gene09755:CDS | 45.0% | |
| GACATCTTCACAAGGTTGTG+AGG | - | chr5.4:6849336-6849355 | None:intergenic | 45.0% | |
| GCACCACCGAAGAACATATA+TGG | - | chr5.4:6849383-6849402 | None:intergenic | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+CGG | + | chr5.4:6847553-6847572 | MS.gene09755:CDS | 45.0% | |
| GGATAAACGTTTCAGCGGTT+CGG | + | chr5.4:6847663-6847682 | MS.gene09755:CDS | 45.0% | |
| GGCTAAGGTTAACGAGACTA+AGG | + | chr5.4:6848919-6848938 | MS.gene09755:CDS | 45.0% | |
| GGTTAACGAGACTAAGGCTA+TGG | + | chr5.4:6848925-6848944 | MS.gene09755:CDS | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | - | chr5.4:6848904-6848923 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGTGT+AGG | - | chr5.4:6848890-6848909 | None:intergenic | 45.0% | |
| TGCACAACACTTTCTTGAGC+TGG | - | chr5.4:6848958-6848977 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | + | chr5.4:6848898-6848917 | MS.gene09755:CDS | 45.0% | |
| ! | GGCAGGCATGTGTTTTCTTT+TGG | + | chr5.4:6848634-6848653 | MS.gene09755:intron | 45.0% |
| ! | TGATTTTGCATCCGGAGCAT+GGG | + | chr5.4:6848377-6848396 | MS.gene09755:intron | 45.0% |
| ! | TTGATTTTGCATCCGGAGCA+TGG | + | chr5.4:6848376-6848395 | MS.gene09755:intron | 45.0% |
| !! | GACTCGGTAAGATTTTCCCA+TGG | - | chr5.4:6849519-6849538 | None:intergenic | 45.0% |
| !! | GCTCAAGAAAGTGTTGTGCA+TGG | + | chr5.4:6848958-6848977 | MS.gene09755:CDS | 45.0% |
| CGGAATCATGGGTGATTCCA+AGG | + | chr5.4:6847573-6847592 | MS.gene09755:CDS | 50.0% | |
| GGTACTGCGACATCTTCACA+AGG | - | chr5.4:6849344-6849363 | None:intergenic | 50.0% | |
| TGATGCCCAACATGTTGAGG+AGG | + | chr5.4:6847735-6847754 | MS.gene09755:CDS | 50.0% | |
| TTGTGCATGGGAGTAGCTGT+TGG | + | chr5.4:6848971-6848990 | MS.gene09755:CDS | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr5.4:6848613-6848632 | MS.gene09755:CDS | 50.0% | |
| ! | TGGTGATGCCCAACATGTTG+AGG | + | chr5.4:6847732-6847751 | MS.gene09755:CDS | 50.0% |
| !! | ATTCCTCGTCTTTTGGGTCC+TGG | + | chr5.4:6848602-6848621 | MS.gene09755:CDS | 50.0% |
| !! | TCAAAATGTCGGTGCTACCG+AGG | + | chr5.4:6847916-6847935 | MS.gene09755:intron | 50.0% |
| AGACCAGGACCCAAAAGACG+AGG | - | chr5.4:6848608-6848627 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr5.4:6848623-6848642 | None:intergenic | 55.0% |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr5.4:6848617-6848636 | MS.gene09755:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 6847340 | 6849544 | 6847340 | ID=MS.gene09755 |
| chr5.4 | mRNA | 6847340 | 6849544 | 6847340 | ID=MS.gene09755.t1;Parent=MS.gene09755 |
| chr5.4 | exon | 6847340 | 6847344 | 6847340 | ID=MS.gene09755.t1.exon1;Parent=MS.gene09755.t1 |
| chr5.4 | CDS | 6847340 | 6847344 | 6847340 | ID=cds.MS.gene09755.t1;Parent=MS.gene09755.t1 |
| chr5.4 | exon | 6847537 | 6847756 | 6847537 | ID=MS.gene09755.t1.exon2;Parent=MS.gene09755.t1 |
| chr5.4 | CDS | 6847537 | 6847756 | 6847537 | ID=cds.MS.gene09755.t1;Parent=MS.gene09755.t1 |
| chr5.4 | exon | 6848473 | 6848638 | 6848473 | ID=MS.gene09755.t1.exon3;Parent=MS.gene09755.t1 |
| chr5.4 | CDS | 6848473 | 6848638 | 6848473 | ID=cds.MS.gene09755.t1;Parent=MS.gene09755.t1 |
| chr5.4 | exon | 6848879 | 6849084 | 6848879 | ID=MS.gene09755.t1.exon4;Parent=MS.gene09755.t1 |
| chr5.4 | CDS | 6848879 | 6849084 | 6848879 | ID=cds.MS.gene09755.t1;Parent=MS.gene09755.t1 |
| chr5.4 | exon | 6849491 | 6849544 | 6849491 | ID=MS.gene09755.t1.exon5;Parent=MS.gene09755.t1 |
| chr5.4 | CDS | 6849491 | 6849544 | 6849491 | ID=cds.MS.gene09755.t1;Parent=MS.gene09755.t1 |
| Gene Sequence |
| Protein sequence |
