Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034454.t1 | XP_003596822.1 | 100 | 200 | 0 | 0 | 1 | 200 | 1 | 200 | 2.70E-103 | 384.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034454.t1 | Q8VZB9 | 91.5 | 200 | 17 | 0 | 1 | 200 | 1 | 200 | 4.2e-97 | 355.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034454.t1 | G7ITT4 | 100.0 | 200 | 0 | 0 | 1 | 200 | 1 | 200 | 1.9e-103 | 384.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene43038 | MS.gene034454 | PPI |
MS.gene031955 | MS.gene034454 | PPI |
MS.gene09753 | MS.gene034454 | PPI |
MS.gene008043 | MS.gene034454 | PPI |
MS.gene21219 | MS.gene034454 | PPI |
MS.gene09755 | MS.gene034454 | PPI |
MS.gene034454 | MS.gene09755 | PPI |
MS.gene82545 | MS.gene034454 | PPI |
MS.gene84323 | MS.gene034454 | PPI |
MS.gene35416 | MS.gene034454 | PPI |
MS.gene034454 | MS.gene82545 | PPI |
MS.gene015407 | MS.gene034454 | PPI |
MS.gene82038 | MS.gene034454 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034454.t1 | MTR_2g086500 | 100.000 | 200 | 0 | 0 | 1 | 200 | 1 | 200 | 4.71e-145 | 403 |
MS.gene034454.t1 | MTR_5g012930 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 9.11e-144 | 400 |
MS.gene034454.t1 | MTR_3g070930 | 98.500 | 200 | 3 | 0 | 1 | 200 | 1 | 200 | 2.26e-143 | 399 |
MS.gene034454.t1 | MTR_3g070930 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 3.79e-89 | 259 |
MS.gene034454.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 3.12e-20 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034454.t1 | AT1G08360 | 91.500 | 200 | 17 | 0 | 1 | 200 | 1 | 200 | 5.09e-119 | 337 |
MS.gene034454.t1 | AT2G27530 | 91.000 | 200 | 18 | 0 | 1 | 200 | 1 | 200 | 2.41e-118 | 335 |
MS.gene034454.t1 | AT2G27530 | 91.000 | 200 | 18 | 0 | 1 | 200 | 1 | 200 | 2.41e-118 | 335 |
MS.gene034454.t1 | AT5G22440 | 91.045 | 201 | 17 | 1 | 1 | 200 | 1 | 201 | 9.82e-117 | 332 |
MS.gene034454.t1 | AT5G22440 | 91.045 | 201 | 17 | 1 | 1 | 200 | 1 | 201 | 9.82e-117 | 332 |
Find 48 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACACTCAGTTGTACATTT+TGG | 0.225251 | 2.3:+12500994 | None:intergenic |
TAAGCAGATTCCCCGCCTTT+TGG | 0.257203 | 2.3:-12501623 | MS.gene034454:CDS |
CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 2.3:+12501114 | None:intergenic |
CAAGAAACTGGTGAAGAAAT+TGG | 0.281282 | 2.3:-12501686 | MS.gene034454:CDS |
AACAGCTTCAGAAGCTAAAA+AGG | 0.292055 | 2.3:+12501648 | None:intergenic |
AAGCATGCAAATCTTCATCT+TGG | 0.411943 | 2.3:+12502364 | None:intergenic |
GAGACCAGGGCCCAAAAGGC+GGG | 0.444250 | 2.3:+12501612 | None:intergenic |
GCTGTGAGAGAAGCTATTAC+AGG | 0.444577 | 2.3:-12502521 | MS.gene034454:CDS |
ATATTGTAGGCTGAGAAAAT+AGG | 0.447504 | 2.3:-12501754 | MS.gene034454:intron |
AGCTGTTGGCAATGTCAGTA+TGG | 0.454854 | 2.3:-12501033 | MS.gene034454:CDS |
GAGACTATTGAACTCCAGAT+TGG | 0.463448 | 2.3:-12502458 | MS.gene034454:CDS |
CGTAGTTCTTAAGACCAATC+TGG | 0.467027 | 2.3:+12502444 | None:intergenic |
AAGATGAAGATTTGCATGCT+TGG | 0.474267 | 2.3:-12502362 | MS.gene034454:CDS |
CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 2.3:-12501114 | MS.gene034454:CDS |
TGTTGAGACCAGGGCCCAAA+AGG | 0.486519 | 2.3:+12501608 | None:intergenic |
AGCATGCAAATCTTCATCTT+GGG | 0.497546 | 2.3:+12502365 | None:intergenic |
GGCTAAGGTTAATGAGACTA+AGG | 0.505363 | 2.3:-12501099 | MS.gene034454:CDS |
TAAGAACTACGACCCACAAA+AGG | 0.507014 | 2.3:-12502432 | MS.gene034454:CDS |
AGAAGCTATTACAGGAATCA+TGG | 0.507152 | 2.3:-12502513 | MS.gene034454:CDS |
GGCCCTGGTCTCAACAAGGC+AGG | 0.511007 | 2.3:-12501601 | MS.gene034454:intron |
TGCACAGCACCTTCTTAAGC+TGG | 0.524094 | 2.3:+12501063 | None:intergenic |
GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 2.3:-12501740 | MS.gene034454:CDS |
GTGCCTGCCTTGTTGAGACC+AGG | 0.526412 | 2.3:+12501598 | None:intergenic |
GCTTAAGAAGGTGCTGTGCA+TGG | 0.529970 | 2.3:-12501060 | MS.gene034454:CDS |
GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 2.3:-12501749 | MS.gene034454:intron |
CTTAAGAAGGTGCTGTGCAT+GGG | 0.555283 | 2.3:-12501059 | MS.gene034454:CDS |
GGTTAATGAGACTAAGGCTA+TGG | 0.560588 | 2.3:-12501093 | MS.gene034454:CDS |
CAAATCTTCATCTTGGGTCG+AGG | 0.562426 | 2.3:+12502371 | None:intergenic |
TGAGACCAGGGCCCAAAAGG+CGG | 0.562642 | 2.3:+12501611 | None:intergenic |
AGGAATGTGAGGCAATTTGA+CGG | 0.562721 | 2.3:+12502391 | None:intergenic |
TTTGGGCCCTGGTCTCAACA+AGG | 0.563100 | 2.3:-12501605 | MS.gene034454:CDS |
TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 2.3:+12501117 | None:intergenic |
TAAGTATTCCACTCATACCA+TGG | 0.565788 | 2.3:-12500932 | MS.gene034454:CDS |
AGACCAGGGCCCAAAAGGCG+GGG | 0.568858 | 2.3:+12501613 | None:intergenic |
GGTCAAGTTCCAGCTTAAGA+AGG | 0.572000 | 2.3:-12501072 | MS.gene034454:CDS |
ACTTCAATCCATGGTATGAG+TGG | 0.578326 | 2.3:+12500924 | None:intergenic |
TCTTGGTGGGAGACAAGTGT+AGG | 0.578834 | 2.3:+12501131 | None:intergenic |
CAAAAGGATAAGCGTTTCAG+TGG | 0.592129 | 2.3:-12502416 | MS.gene034454:CDS |
CTGTGCATGGGAGTAGCTGT+TGG | 0.601108 | 2.3:-12501047 | MS.gene034454:CDS |
TGCCTGCCTTGTTGAGACCA+GGG | 0.604300 | 2.3:+12501599 | None:intergenic |
TCATGTCAAAACATAAAAGA+CGG | 0.607702 | 2.3:+12500888 | None:intergenic |
ATCTTGGGTCGAGGAATGTG+AGG | 0.608945 | 2.3:+12502380 | None:intergenic |
AAAGCAATGACTTCAATCCA+TGG | 0.619399 | 2.3:+12500915 | None:intergenic |
TGGAGATGCTCAGCATGTTG+AGG | 0.621445 | 2.3:-12502342 | MS.gene034454:CDS |
CTTGGTGGGAGACAAGTGTA+GGG | 0.633232 | 2.3:+12501132 | None:intergenic |
AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 2.3:+12501118 | None:intergenic |
AGATGCTCAGCATGTTGAGG+AGG | 0.663333 | 2.3:-12502339 | MS.gene034454:intron |
CTCCCACCAAGAATCTCTTG+AGG | 0.684889 | 2.3:-12501120 | MS.gene034454:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATTTGAAAATTAATTAGTT+GGG | - | chr2.3:12501083-12501102 | MS.gene034454:CDS | 15.0% |
!! | TGATTTGAAAATTAATTAGT+TGG | - | chr2.3:12501082-12501101 | MS.gene034454:CDS | 15.0% |
!!! | ATATGTATAGAATGTTTTTA+GGG | - | chr2.3:12502429-12502448 | MS.gene034454:CDS | 15.0% |
!!! | TATATGTATAGAATGTTTTT+AGG | - | chr2.3:12502428-12502447 | MS.gene034454:CDS | 15.0% |
!!! | TGTTTTTAATTTAGTTTTGA+TGG | - | chr2.3:12501990-12502009 | MS.gene034454:intron | 15.0% |
!! | AACAAACTGTATATAACTTT+AGG | + | chr2.3:12500956-12500975 | None:intergenic | 20.0% |
!! | AACTCTAATATGAATATTGT+AGG | - | chr2.3:12502088-12502107 | MS.gene034454:intron | 20.0% |
!! | ACATTTAGAAAAATCTCTAT+TGG | - | chr2.3:12501849-12501868 | MS.gene034454:intron | 20.0% |
!! | GTTAATTGAAAGTAAACAAT+GGG | - | chr2.3:12501257-12501276 | MS.gene034454:intron | 20.0% |
!! | TCAAATAGCACAAAATAAAT+TGG | + | chr2.3:12501669-12501688 | None:intergenic | 20.0% |
!! | TGTTAATTGAAAGTAAACAA+TGG | - | chr2.3:12501256-12501275 | MS.gene034454:intron | 20.0% |
!! | TTAATTGAAAGTAAACAATG+GGG | - | chr2.3:12501258-12501277 | MS.gene034454:intron | 20.0% |
!!! | AACTACTTATTTTCTGAAAT+AGG | - | chr2.3:12501712-12501731 | MS.gene034454:CDS | 20.0% |
!!! | TTCTGTTTTAAACCATATTT+CGG | + | chr2.3:12501109-12501128 | None:intergenic | 20.0% |
! | AACTAAATGAAAAAGAAGCA+GGG | + | chr2.3:12502603-12502622 | None:intergenic | 25.0% |
! | AATTTGAAAGGAACATGTTA+TGG | + | chr2.3:12502648-12502667 | None:intergenic | 25.0% |
! | ATATTCAACAAGCAAGAAAT+TGG | + | chr2.3:12502497-12502516 | None:intergenic | 25.0% |
! | GAAAGATAAACAAAACATGT+GGG | + | chr2.3:12502396-12502415 | None:intergenic | 25.0% |
! | TAACTAAATGAAAAAGAAGC+AGG | + | chr2.3:12502604-12502623 | None:intergenic | 25.0% |
! | TACTTGATTGAGAAACTATT+AGG | - | chr2.3:12501057-12501076 | MS.gene034454:CDS | 25.0% |
! | TGAAAGATAAACAAAACATG+TGG | + | chr2.3:12502397-12502416 | None:intergenic | 25.0% |
! | TGTCCTTGTTGAAAAAAAAT+TGG | - | chr2.3:12502893-12502912 | MS.gene034454:intron | 25.0% |
!! | AAATTTTCGGTTTTTCTCTT+TGG | + | chr2.3:12501374-12501393 | None:intergenic | 25.0% |
!! | CAATAGTCTCAACAAATTTT+CGG | + | chr2.3:12501387-12501406 | None:intergenic | 25.0% |
!!! | TGTGCTATTTGAATTGATTT+TGG | - | chr2.3:12501677-12501696 | MS.gene034454:CDS | 25.0% |
!!! | TTGCCAATTTTTTTTCAACA+AGG | + | chr2.3:12502899-12502918 | None:intergenic | 25.0% |
AAGCTACAAAAATGTGAACA+TGG | + | chr2.3:12500924-12500943 | None:intergenic | 30.0% | |
AATTGGAAGACACAAAAATG+AGG | + | chr2.3:12501652-12501671 | None:intergenic | 30.0% | |
ATATTGTAGGCTGAGAAAAT+AGG | - | chr2.3:12502101-12502120 | MS.gene034454:intron | 30.0% | |
ATGTAAACTTGAATACAACC+AGG | + | chr2.3:12502455-12502474 | None:intergenic | 30.0% | |
ATTAACACAAGAAACTTAGC+AGG | + | chr2.3:12502062-12502081 | None:intergenic | 30.0% | |
ATTGGAAGACACAAAAATGA+GGG | + | chr2.3:12501651-12501670 | None:intergenic | 30.0% | |
GCTAAACAAAAACAAGAAAC+TGG | - | chr2.3:12502157-12502176 | MS.gene034454:intron | 30.0% | |
TAACAGTATGTTTGAACACA+AGG | + | chr2.3:12502558-12502577 | None:intergenic | 30.0% | |
! | TAACACTCAGTTGTACATTT+TGG | + | chr2.3:12502864-12502883 | None:intergenic | 30.0% |
!! | AACATCAGTTTGTTGATTTG+TGG | + | chr2.3:12501974-12501993 | None:intergenic | 30.0% |
!!! | TTTTTTTCAACAAGGACACA+AGG | + | chr2.3:12502891-12502910 | None:intergenic | 30.0% |
AAAGCAATGACTTCAATCCA+TGG | + | chr2.3:12502943-12502962 | None:intergenic | 35.0% | |
AAATCAGTCTACGCAATAAC+TGG | + | chr2.3:12502671-12502690 | None:intergenic | 35.0% | |
AAATGAAAAAGAAGCAGGGT+TGG | + | chr2.3:12502599-12502618 | None:intergenic | 35.0% | |
AACAGCTTCAGAAGCTAAAA+AGG | + | chr2.3:12502210-12502229 | None:intergenic | 35.0% | |
AAGATGAAGATTTGCATGCT+TGG | - | chr2.3:12501493-12501512 | MS.gene034454:intron | 35.0% | |
AAGCATGCAAATCTTCATCT+TGG | + | chr2.3:12501494-12501513 | None:intergenic | 35.0% | |
AGAAGCTATTACAGGAATCA+TGG | - | chr2.3:12501342-12501361 | MS.gene034454:intron | 35.0% | |
AGCATGCAAATCTTCATCTT+GGG | + | chr2.3:12501493-12501512 | None:intergenic | 35.0% | |
AGTTATTGCGTAGACTGATT+TGG | - | chr2.3:12502670-12502689 | MS.gene034454:intron | 35.0% | |
ATGTAACCGAATCCATTTAG+TGG | - | chr2.3:12501150-12501169 | MS.gene034454:intron | 35.0% | |
ATTGTAACTCTCAAGTTCCT+AGG | + | chr2.3:12502531-12502550 | None:intergenic | 35.0% | |
CAAGAAACTGGTGAAGAAAT+TGG | - | chr2.3:12502169-12502188 | MS.gene034454:intron | 35.0% | |
CGCAATAACTGGAATTTGAA+AGG | + | chr2.3:12502660-12502679 | None:intergenic | 35.0% | |
GAAAATAGGATTGGAATCGA+TGG | - | chr2.3:12502115-12502134 | MS.gene034454:intron | 35.0% | |
GTGGATCCAACAAAATAGTT+GGG | + | chr2.3:12501561-12501580 | None:intergenic | 35.0% | |
TAAGTATTCCACTCATACCA+TGG | - | chr2.3:12502923-12502942 | MS.gene034454:intron | 35.0% | |
TAATTAGTTGGGCCGAAATA+TGG | - | chr2.3:12501094-12501113 | MS.gene034454:CDS | 35.0% | |
TCTACAGCACTATTGCTTAT+TGG | - | chr2.3:12501892-12501911 | MS.gene034454:intron | 35.0% | |
TGTGGATCCAACAAAATAGT+TGG | + | chr2.3:12501562-12501581 | None:intergenic | 35.0% | |
TTGAAAGGAACATGTTATGG+TGG | + | chr2.3:12502645-12502664 | None:intergenic | 35.0% | |
! | TGAAACGCTTATCCTTTTGT+GGG | + | chr2.3:12501438-12501457 | None:intergenic | 35.0% |
! | TTGTAGCCCAACTATTTTGT+TGG | - | chr2.3:12501552-12501571 | MS.gene034454:intron | 35.0% |
!! | CTTTTGCCACTAAATGGATT+CGG | + | chr2.3:12501159-12501178 | None:intergenic | 35.0% |
!!! | TATAGAATGTTTTTAGGGCC+TGG | - | chr2.3:12502434-12502453 | MS.gene034454:CDS | 35.0% |
ACTTCAATCCATGGTATGAG+TGG | + | chr2.3:12502934-12502953 | None:intergenic | 40.0% | |
AGGAATGTGAGGCAATTTGA+CGG | + | chr2.3:12501467-12501486 | None:intergenic | 40.0% | |
CAAAAGGATAAGCGTTTCAG+TGG | - | chr2.3:12501439-12501458 | MS.gene034454:intron | 40.0% | |
CAACAAGCAAGAAATTGGTG+TGG | + | chr2.3:12502492-12502511 | None:intergenic | 40.0% | |
CCACATGTAGTTGGTTGAAA+TGG | - | chr2.3:12501577-12501596 | MS.gene034454:intron | 40.0% | |
CCATTTCAACCAACTACATG+TGG | + | chr2.3:12501580-12501599 | None:intergenic | 40.0% | |
CGTAGTTCTTAAGACCAATC+TGG | + | chr2.3:12501414-12501433 | None:intergenic | 40.0% | |
CTTCAGAAGCTAAAAAGGCA+TGG | + | chr2.3:12502205-12502224 | None:intergenic | 40.0% | |
GAATATCAGTCTGATTGCCT+AGG | - | chr2.3:12502511-12502530 | MS.gene034454:CDS | 40.0% | |
GAGACTATTGAACTCCAGAT+TGG | - | chr2.3:12501397-12501416 | MS.gene034454:intron | 40.0% | |
GGCTAAGGTTAATGAGACTA+AGG | - | chr2.3:12502756-12502775 | MS.gene034454:intron | 40.0% | |
GGTTAATGAGACTAAGGCTA+TGG | - | chr2.3:12502762-12502781 | MS.gene034454:intron | 40.0% | |
GTAGGCTGAGAAAATAGGAT+TGG | - | chr2.3:12502106-12502125 | MS.gene034454:intron | 40.0% | |
TAAGAACTACGACCCACAAA+AGG | - | chr2.3:12501423-12501442 | MS.gene034454:intron | 40.0% | |
TCCATTTAGTGGCAAAAGCT+TGG | - | chr2.3:12501161-12501180 | MS.gene034454:intron | 40.0% | |
TGACTTTGCATTATGTGCTG+AGG | - | chr2.3:12502016-12502035 | MS.gene034454:intron | 40.0% | |
TTGTTGGATCCACATGTAGT+TGG | - | chr2.3:12501568-12501587 | MS.gene034454:intron | 40.0% | |
! | ACCAAGCTTTTGCCACTAAA+TGG | + | chr2.3:12501165-12501184 | None:intergenic | 40.0% |
! | CTGAAACGCTTATCCTTTTG+TGG | + | chr2.3:12501439-12501458 | None:intergenic | 40.0% |
!!! | AGGCACGTGTTTTGTTTTTG+GGG | - | chr2.3:12502274-12502293 | MS.gene034454:intron | 40.0% |
!!! | CAGGCACGTGTTTTGTTTTT+GGG | - | chr2.3:12502273-12502292 | MS.gene034454:intron | 40.0% |
!!! | CTGCTATTTTCTGCATTCCA+CGG | - | chr2.3:12501927-12501946 | MS.gene034454:intron | 40.0% |
!!! | TGCTATTTTCTGCATTCCAC+GGG | - | chr2.3:12501928-12501947 | MS.gene034454:intron | 40.0% |
AGCAAGAAATTGGTGTGGTC+TGG | + | chr2.3:12502487-12502506 | None:intergenic | 45.0% | |
AGCCTCAAGAGATTCTTGGT+GGG | + | chr2.3:12502740-12502759 | None:intergenic | 45.0% | |
AGCTGTTGGCAATGTCAGTA+TGG | - | chr2.3:12502822-12502841 | MS.gene034454:intron | 45.0% | |
CAAATCTTCATCTTGGGTCG+AGG | + | chr2.3:12501487-12501506 | None:intergenic | 45.0% | |
CCAAGAATCTCTTGAGGCTA+AGG | - | chr2.3:12502741-12502760 | MS.gene034454:intron | 45.0% | |
CCTTAGCCTCAAGAGATTCT+TGG | + | chr2.3:12502744-12502763 | None:intergenic | 45.0% | |
GCAAGAAATTGGTGTGGTCT+GGG | + | chr2.3:12502486-12502505 | None:intergenic | 45.0% | |
GCTGTGAGAGAAGCTATTAC+AGG | - | chr2.3:12501334-12501353 | MS.gene034454:intron | 45.0% | |
GGTCAAGTTCCAGCTTAAGA+AGG | - | chr2.3:12502783-12502802 | MS.gene034454:intron | 45.0% | |
GTAGGGAACTTTCCTGCAAA+GGG | + | chr2.3:12502709-12502728 | None:intergenic | 45.0% | |
TAGCCTCAAGAGATTCTTGG+TGG | + | chr2.3:12502741-12502760 | None:intergenic | 45.0% | |
TATTCTGTCTGTCCCTTTGC+AGG | - | chr2.3:12502694-12502713 | MS.gene034454:intron | 45.0% | |
TGTAGGGAACTTTCCTGCAA+AGG | + | chr2.3:12502710-12502729 | None:intergenic | 45.0% | |
! | TAAATCAATTTTGCCGCCCG+TGG | + | chr2.3:12501947-12501966 | None:intergenic | 45.0% |
! | TATTTTCTGCATTCCACGGG+CGG | - | chr2.3:12501931-12501950 | MS.gene034454:intron | 45.0% |
!! | CTTAAGAAGGTGCTGTGCAT+GGG | - | chr2.3:12502796-12502815 | MS.gene034454:intron | 45.0% |
!!! | GCAGGCACGTGTTTTGTTTT+TGG | - | chr2.3:12502272-12502291 | MS.gene034454:intron | 45.0% |
AGATGCTCAGCATGTTGAGG+AGG | - | chr2.3:12501516-12501535 | MS.gene034454:intron | 50.0% | |
ATCTTGGGTCGAGGAATGTG+AGG | + | chr2.3:12501478-12501497 | None:intergenic | 50.0% | |
CTCCCACCAAGAATCTCTTG+AGG | - | chr2.3:12502735-12502754 | MS.gene034454:intron | 50.0% | |
CTTGGTGGGAGACAAGTGTA+GGG | + | chr2.3:12502726-12502745 | None:intergenic | 50.0% | |
TCTTGGTGGGAGACAAGTGT+AGG | + | chr2.3:12502727-12502746 | None:intergenic | 50.0% | |
TGCACAGCACCTTCTTAAGC+TGG | + | chr2.3:12502795-12502814 | None:intergenic | 50.0% | |
TGGAGATGCTCAGCATGTTG+AGG | - | chr2.3:12501513-12501532 | MS.gene034454:intron | 50.0% | |
! | AAGCAGATTCCCCGCCTTTT+GGG | - | chr2.3:12502233-12502252 | MS.gene034454:intron | 50.0% |
! | TAAGCAGATTCCCCGCCTTT+TGG | - | chr2.3:12502232-12502251 | MS.gene034454:intron | 50.0% |
!! | GCTTAAGAAGGTGCTGTGCA+TGG | - | chr2.3:12502795-12502814 | MS.gene034454:intron | 50.0% |
CTGTGCATGGGAGTAGCTGT+TGG | - | chr2.3:12502808-12502827 | MS.gene034454:intron | 55.0% | |
TGTTGAGACCAGGGCCCAAA+AGG | + | chr2.3:12502250-12502269 | None:intergenic | 55.0% | |
TTTGGGCCCTGGTCTCAACA+AGG | - | chr2.3:12502250-12502269 | MS.gene034454:intron | 55.0% | |
! | TGCCTGCCTTGTTGAGACCA+GGG | + | chr2.3:12502259-12502278 | None:intergenic | 55.0% |
TGAGACCAGGGCCCAAAAGG+CGG | + | chr2.3:12502247-12502266 | None:intergenic | 60.0% | |
! | GTGCCTGCCTTGTTGAGACC+AGG | + | chr2.3:12502260-12502279 | None:intergenic | 60.0% |
AGACCAGGGCCCAAAAGGCG+GGG | + | chr2.3:12502245-12502264 | None:intergenic | 65.0% | |
GAGACCAGGGCCCAAAAGGC+GGG | + | chr2.3:12502246-12502265 | None:intergenic | 65.0% | |
GGCCCTGGTCTCAACAAGGC+AGG | - | chr2.3:12502254-12502273 | MS.gene034454:intron | 65.0% | |
! | ATTCCCCGCCTTTTGGGCCC+TGG | - | chr2.3:12502239-12502258 | MS.gene034454:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 12500893 | 12502984 | 12500893 | ID=MS.gene034454 |
chr2.3 | mRNA | 12500893 | 12502984 | 12500893 | ID=MS.gene034454.t1;Parent=MS.gene034454 |
chr2.3 | exon | 12502980 | 12502984 | 12502980 | ID=MS.gene034454.t1.exon1;Parent=MS.gene034454.t1 |
chr2.3 | CDS | 12502980 | 12502984 | 12502980 | ID=cds.MS.gene034454.t1;Parent=MS.gene034454.t1 |
chr2.3 | exon | 12502340 | 12502559 | 12502340 | ID=MS.gene034454.t1.exon2;Parent=MS.gene034454.t1 |
chr2.3 | CDS | 12502340 | 12502559 | 12502340 | ID=cds.MS.gene034454.t1;Parent=MS.gene034454.t1 |
chr2.3 | exon | 12501602 | 12501767 | 12501602 | ID=MS.gene034454.t1.exon3;Parent=MS.gene034454.t1 |
chr2.3 | CDS | 12501602 | 12501767 | 12501602 | ID=cds.MS.gene034454.t1;Parent=MS.gene034454.t1 |
chr2.3 | exon | 12500893 | 12501161 | 12500893 | ID=MS.gene034454.t1.exon4;Parent=MS.gene034454.t1 |
chr2.3 | CDS | 12500893 | 12501161 | 12500893 | ID=cds.MS.gene034454.t1;Parent=MS.gene034454.t1 |
Gene Sequence |
Protein sequence |