Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82038.t1 | XP_003600923.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.30E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82038.t1 | Q8VZB9 | 88.9 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 3.8e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82038.t1 | B7FGL9 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 4.5e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene82038 | 0.864086 | 1.57E-64 | -1.69E-46 |
| MS.gene050252 | MS.gene82038 | 0.876165 | 1.73E-68 | -1.69E-46 |
| MS.gene050290 | MS.gene82038 | 0.83702 | 6.65E-57 | -1.69E-46 |
| MS.gene050791 | MS.gene82038 | 0.915576 | 4.99E-85 | -1.69E-46 |
| MS.gene050912 | MS.gene82038 | 0.859721 | 3.40E-63 | -1.69E-46 |
| MS.gene051904 | MS.gene82038 | 0.837398 | 5.32E-57 | -1.69E-46 |
| MS.gene051984 | MS.gene82038 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene052057 | MS.gene82038 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene052412 | MS.gene82038 | 0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene053224 | MS.gene82038 | 0.866499 | 2.73E-65 | -1.69E-46 |
| MS.gene057092 | MS.gene82038 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene057272 | MS.gene82038 | 0.918268 | 1.92E-86 | -1.69E-46 |
| MS.gene057643 | MS.gene82038 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene059340 | MS.gene82038 | 0.808068 | 3.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82038 | MS.gene09755 | PPI |
| MS.gene82038 | MS.gene09753 | PPI |
| MS.gene82038 | MS.gene43038 | PPI |
| MS.gene82038 | MS.gene008043 | PPI |
| MS.gene82038 | MS.gene015407 | PPI |
| MS.gene21219 | MS.gene82038 | PPI |
| MS.gene35416 | MS.gene82038 | PPI |
| MS.gene015407 | MS.gene82038 | PPI |
| MS.gene82038 | MS.gene031955 | PPI |
| MS.gene82038 | MS.gene034454 | PPI |
| MS.gene82038 | MS.gene82545 | PPI |
| MS.gene82038 | MS.gene84323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82038.t1 | MTR_3g070930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 8.64e-159 | 437 |
| MS.gene82038.t1 | MTR_2g086500 | 98.611 | 216 | 3 | 0 | 1 | 216 | 1 | 216 | 1.87e-157 | 434 |
| MS.gene82038.t1 | MTR_5g012930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene82038.t1 | MTR_3g070930 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.81e-90 | 261 |
| MS.gene82038.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.73e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82038.t1 | AT1G08360 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 1.71e-128 | 361 |
| MS.gene82038.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene82038.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene82038.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene82038.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene82038.t1 | AT2G42650 | 24.255 | 235 | 147 | 10 | 1 | 208 | 1 | 231 | 9.73e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 3.2:-64513606 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 3.2:+64513182 | MS.gene82038:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 3.2:+64511033 | MS.gene82038:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 3.2:-64513142 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 3.2:-64511037 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 3.2:-64511126 | None:intergenic |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 3.2:+64513065 | MS.gene82038:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 3.2:+64513056 | MS.gene82038:intron |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 3.2:+64513673 | MS.gene82038:CDS |
| ATATACCTCTTCGACGTGTT+GGG | 0.467119 | 3.2:-64511157 | None:intergenic |
| TATATACCTCTTCGACGTGT+TGG | 0.467153 | 3.2:-64511158 | None:intergenic |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 3.2:+64513051 | MS.gene82038:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 3.2:-64511111 | None:intergenic |
| CTTGTATCTGAAGAGTTCAA+TGG | 0.484688 | 3.2:+64514270 | MS.gene82038:CDS |
| TTGTATCTGAAGAGTTCAAT+GGG | 0.501469 | 3.2:+64514271 | MS.gene82038:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 3.2:+64513672 | MS.gene82038:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 3.2:+64513606 | MS.gene82038:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 3.2:+64510978 | MS.gene82038:CDS |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 3.2:-64513193 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 3.2:+64510970 | MS.gene82038:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 3.2:-64511120 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+CGG | 0.532764 | 3.2:+64511129 | MS.gene82038:CDS |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 3.2:-64513589 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 3.2:+64513648 | MS.gene82038:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 3.2:+64513660 | MS.gene82038:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 3.2:+64513661 | MS.gene82038:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 3.2:-64513588 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 3.2:+64513601 | MS.gene82038:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 3.2:+64513204 | MS.gene82038:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 3.2:+64513152 | MS.gene82038:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 3.2:-64511100 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 3.2:+64513200 | MS.gene82038:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 3.2:+64513627 | MS.gene82038:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 3.2:+64510948 | MS.gene82038:intron |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 3.2:-64513152 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 3.2:+64513687 | MS.gene82038:CDS |
| AGATGCCCAACACGTCGAAG+AGG | 0.614877 | 3.2:+64511152 | MS.gene82038:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 3.2:-64513194 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 3.2:+64513600 | MS.gene82038:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 3.2:-64513207 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 3.2:+64513621 | MS.gene82038:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 3.2:-64511119 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 3.2:-64514303 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 3.2:-64513192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAAAATACATTAAAT+TGG | - | chr3.2:64511215-64511234 | None:intergenic | 10.0% |
| !! | TTATTTCGTATATTATTAAA+TGG | + | chr3.2:64512875-64512894 | MS.gene82038:intron | 10.0% |
| !! | AGAATAAAAAAAATATGAGA+AGG | - | chr3.2:64512391-64512410 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | chr3.2:64512882-64512901 | MS.gene82038:intron | 15.0% |
| !!! | AATTTTTTAACACTGATTTA+CGG | + | chr3.2:64514129-64514148 | MS.gene82038:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | chr3.2:64513384-64513403 | None:intergenic | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | - | chr3.2:64511569-64511588 | None:intergenic | 20.0% |
| !! | AGATAGAATTTATCTTATAC+AGG | - | chr3.2:64511628-64511647 | None:intergenic | 20.0% |
| !! | AGTGTTAAAAAATTTCAACT+AGG | - | chr3.2:64514123-64514142 | None:intergenic | 20.0% |
| !! | ATGTAATATTCTAATCTCAT+TGG | - | chr3.2:64511596-64511615 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | chr3.2:64513497-64513516 | MS.gene82038:intron | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | chr3.2:64511805-64511824 | None:intergenic | 20.0% |
| !! | GTGTTAAAAAATTTCAACTA+GGG | - | chr3.2:64514122-64514141 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | - | chr3.2:64513460-64513479 | None:intergenic | 20.0% |
| !! | TGTAAAATCCTAGTATAAAT+CGG | + | chr3.2:64511647-64511666 | MS.gene82038:intron | 20.0% |
| !!! | ATTTTTTAACACTGATTTAC+GGG | + | chr3.2:64514130-64514149 | MS.gene82038:intron | 20.0% |
| !!! | TGTTTTATGAATATTCGATT+AGG | + | chr3.2:64512610-64512629 | MS.gene82038:intron | 20.0% |
| !!! | TTTAGTTTTGCAAATTTTGT+TGG | + | chr3.2:64512714-64512733 | MS.gene82038:intron | 20.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | chr3.2:64514013-64514032 | MS.gene82038:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | chr3.2:64514014-64514033 | MS.gene82038:intron | 25.0% |
| ! | AAACAAACACTCTTTAAGTA+CGG | - | chr3.2:64512128-64512147 | None:intergenic | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | chr3.2:64512250-64512269 | MS.gene82038:intron | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | chr3.2:64511187-64511206 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+TGG | - | chr3.2:64513024-64513043 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | chr3.2:64513979-64513998 | None:intergenic | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | chr3.2:64511705-64511724 | MS.gene82038:intron | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | chr3.2:64512058-64512077 | None:intergenic | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | chr3.2:64511798-64511817 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | chr3.2:64512071-64512090 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAAAACTAAAC+TGG | - | chr3.2:64512713-64512732 | None:intergenic | 25.0% |
| ! | CGAATATTCATAAAACAGTT+TGG | - | chr3.2:64512607-64512626 | None:intergenic | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+CGG | - | chr3.2:64514174-64514193 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | chr3.2:64513107-64513126 | MS.gene82038:CDS | 25.0% |
| ! | GCTTAAGTATTCAACAATTA+TGG | + | chr3.2:64513519-64513538 | MS.gene82038:intron | 25.0% |
| ! | GGAAGTTAAAAACAAAGATA+AGG | - | chr3.2:64512692-64512711 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | chr3.2:64511799-64511818 | None:intergenic | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | - | chr3.2:64513850-64513869 | None:intergenic | 25.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | chr3.2:64510845-64510864 | None:intergenic | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | chr3.2:64513560-64513579 | MS.gene82038:intron | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | chr3.2:64513100-64513119 | None:intergenic | 25.0% |
| !! | CAAAAGATTAACAGCTTTAA+TGG | - | chr3.2:64513343-64513362 | None:intergenic | 25.0% |
| !! | GGAAATATGAATCGATTTAT+TGG | - | chr3.2:64510824-64510843 | None:intergenic | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | chr3.2:64513245-64513264 | MS.gene82038:intron | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | chr3.2:64513559-64513578 | MS.gene82038:intron | 25.0% |
| !! | TCCAAGTTTTTACTGTTTTA+AGG | + | chr3.2:64511457-64511476 | MS.gene82038:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | chr3.2:64512274-64512293 | MS.gene82038:intron | 25.0% |
| !!! | ACTTAAAGAGTGTTTGTTTT+TGG | + | chr3.2:64512129-64512148 | MS.gene82038:intron | 25.0% |
| !!! | CCAAGTTTTTACTGTTTTAA+GGG | + | chr3.2:64511458-64511477 | MS.gene82038:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | chr3.2:64513489-64513508 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | chr3.2:64511849-64511868 | None:intergenic | 25.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | chr3.2:64512348-64512367 | None:intergenic | 30.0% | |
| AAAAACCCAATTCAACAGAA+GGG | - | chr3.2:64511988-64512007 | None:intergenic | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | chr3.2:64513267-64513286 | None:intergenic | 30.0% | |
| AAAATCCTAGTATAAATCGG+TGG | + | chr3.2:64511650-64511669 | MS.gene82038:intron | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | - | chr3.2:64513965-64513984 | None:intergenic | 30.0% | |
| AAATTGCATCCCTTAACAAA+AGG | - | chr3.2:64511419-64511438 | None:intergenic | 30.0% | |
| ATCACAAGTTCAAATACTCA+TGG | + | chr3.2:64512644-64512663 | MS.gene82038:intron | 30.0% | |
| ATGAGAAGGAATTAGTAGTA+TGG | - | chr3.2:64512377-64512396 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | chr3.2:64512059-64512078 | None:intergenic | 30.0% | |
| CATATTGTACAAATTCAGAG+TGG | - | chr3.2:64512497-64512516 | None:intergenic | 30.0% | |
| CCCTTAAAACAGTAAAAACT+TGG | - | chr3.2:64511461-64511480 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | chr3.2:64511533-64511552 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | chr3.2:64512423-64512442 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | chr3.2:64512807-64512826 | MS.gene82038:intron | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | chr3.2:64512430-64512449 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | chr3.2:64511533-64511552 | MS.gene82038:intron | 30.0% | |
| TTACGCTACATAGATATATC+TGG | + | chr3.2:64511370-64511389 | MS.gene82038:intron | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | chr3.2:64511532-64511551 | None:intergenic | 30.0% | |
| TTGTATCTGAAGAGTTCAAT+GGG | + | chr3.2:64514271-64514290 | MS.gene82038:CDS | 30.0% | |
| TTGTGCAACGATGAAATAAA+AGG | - | chr3.2:64513799-64513818 | None:intergenic | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | + | chr3.2:64512182-64512201 | MS.gene82038:intron | 30.0% | |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | chr3.2:64511010-64511029 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | chr3.2:64512278-64512297 | MS.gene82038:intron | 30.0% |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | chr3.2:64512263-64512282 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | chr3.2:64511074-64511093 | None:intergenic | 30.0% |
| ! | TTCCACTATCCTTTTGTTAA+GGG | + | chr3.2:64511407-64511426 | MS.gene82038:intron | 30.0% |
| !! | AATGAATTGCCTTGTTTGAA+AGG | + | chr3.2:64513448-64513467 | MS.gene82038:intron | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | chr3.2:64510923-64510942 | MS.gene82038:intron | 30.0% |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | chr3.2:64514182-64514201 | MS.gene82038:intron | 30.0% |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | chr3.2:64511854-64511873 | None:intergenic | 30.0% |
| AACCAAACCCTTAGATGAAA+AGG | - | chr3.2:64511909-64511928 | None:intergenic | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | - | chr3.2:64514027-64514046 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | chr3.2:64513038-64513057 | MS.gene82038:intron | 35.0% | |
| ACACAGATTACAGCAATTCA+AGG | - | chr3.2:64513993-64514012 | None:intergenic | 35.0% | |
| ACCAAACCCTTAGATGAAAA+GGG | - | chr3.2:64511908-64511927 | None:intergenic | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | chr3.2:64511129-64511148 | None:intergenic | 35.0% | |
| ATCCCTTAACAAAAGGATAG+TGG | - | chr3.2:64511412-64511431 | None:intergenic | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | chr3.2:64513878-64513897 | MS.gene82038:intron | 35.0% | |
| CAAAAAGATAAGCGTTTCAG+TGG | + | chr3.2:64511075-64511094 | MS.gene82038:CDS | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | chr3.2:64514202-64514221 | None:intergenic | 35.0% | |
| CTTGTATCTGAAGAGTTCAA+TGG | + | chr3.2:64514270-64514289 | MS.gene82038:CDS | 35.0% | |
| GAAAAACCCAATTCAACAGA+AGG | - | chr3.2:64511989-64512008 | None:intergenic | 35.0% | |
| GACAAATAAGTTACGACAGT+AGG | + | chr3.2:64512937-64512956 | MS.gene82038:intron | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | chr3.2:64511033-64511052 | MS.gene82038:CDS | 35.0% | |
| GATTACAGCAATTCAAGGAA+AGG | - | chr3.2:64513988-64514007 | None:intergenic | 35.0% | |
| GGTGAAATTTCAGCTAAAGA+AGG | + | chr3.2:64513648-64513667 | MS.gene82038:CDS | 35.0% | |
| GTTTGTGATTTAGAGGAAAG+TGG | - | chr3.2:64511827-64511846 | None:intergenic | 35.0% | |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | chr3.2:64513758-64513777 | MS.gene82038:CDS | 35.0% | |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | chr3.2:64510948-64510967 | MS.gene82038:intron | 35.0% | |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | chr3.2:64513183-64513202 | MS.gene82038:CDS | 35.0% |
| ! | AAGATGAAGCTTTGTATGCT+CGG | + | chr3.2:64511129-64511148 | MS.gene82038:CDS | 35.0% |
| ! | ACAAATGACTTGGCAAAAAC+TGG | - | chr3.2:64513014-64513033 | None:intergenic | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | chr3.2:64511075-64511094 | None:intergenic | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | + | chr3.2:64511406-64511425 | MS.gene82038:intron | 35.0% |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | chr3.2:64513065-64513084 | MS.gene82038:CDS | 35.0% |
| ! | GAATATTCGATTAGGTGTTG+TGG | + | chr3.2:64512618-64512637 | MS.gene82038:intron | 35.0% |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | chr3.2:64512277-64512296 | MS.gene82038:intron | 35.0% |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | chr3.2:64511040-64511059 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | chr3.2:64513182-64513201 | MS.gene82038:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | chr3.2:64513145-64513164 | None:intergenic | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | chr3.2:64512293-64512312 | MS.gene82038:intron | 35.0% |
| !! | CATAACCTACTGTTGATTTC+AGG | + | chr3.2:64514240-64514259 | MS.gene82038:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | chr3.2:64512828-64512847 | MS.gene82038:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | chr3.2:64512299-64512318 | MS.gene82038:intron | 35.0% |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | chr3.2:64511834-64511853 | None:intergenic | 35.0% |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | chr3.2:64511910-64511929 | MS.gene82038:intron | 35.0% |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | chr3.2:64513756-64513775 | None:intergenic | 35.0% |
| AAAGCTTCATCTTAGGACGA+GGG | - | chr3.2:64511122-64511141 | None:intergenic | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | chr3.2:64511980-64511999 | MS.gene82038:intron | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | chr3.2:64513051-64513070 | MS.gene82038:intron | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | chr3.2:64511872-64511891 | MS.gene82038:intron | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | chr3.2:64510978-64510997 | MS.gene82038:CDS | 40.0% | |
| ATATACCTCTTCGACGTGTT+GGG | - | chr3.2:64511160-64511179 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | chr3.2:64512333-64512352 | None:intergenic | 40.0% | |
| CACTGATCCAATTTCTGATG+GGG | + | chr3.2:64512152-64512171 | MS.gene82038:intron | 40.0% | |
| GACCTCAAATTAGGGATAAG+TGG | + | chr3.2:64514022-64514041 | MS.gene82038:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | chr3.2:64513226-64513245 | MS.gene82038:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | chr3.2:64511979-64511998 | MS.gene82038:intron | 40.0% | |
| TATATACCTCTTCGACGTGT+TGG | - | chr3.2:64511161-64511180 | None:intergenic | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | chr3.2:64513052-64513071 | None:intergenic | 40.0% | |
| TCAAGATCTGAGCTTCTTGT+TGG | - | chr3.2:64511872-64511891 | None:intergenic | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | chr3.2:64513601-64513620 | MS.gene82038:CDS | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | chr3.2:64512162-64512181 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | chr3.2:64512842-64512861 | MS.gene82038:intron | 40.0% | |
| ! | ATGACTTGGCAAAAACTGGA+AGG | - | chr3.2:64513010-64513029 | None:intergenic | 40.0% |
| ! | CGGATGAAAGAAAGTATGTC+AGG | - | chr3.2:64513945-64513964 | None:intergenic | 40.0% |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | chr3.2:64512151-64512170 | MS.gene82038:intron | 40.0% |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | - | chr3.2:64511404-64511423 | None:intergenic | 40.0% |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | chr3.2:64514245-64514264 | MS.gene82038:intron | 40.0% |
| !! | TAGCACCACCGATTTATACT+AGG | - | chr3.2:64511658-64511677 | None:intergenic | 40.0% |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | chr3.2:64513764-64513783 | None:intergenic | 40.0% |
| AAGGAAAATCAGATGGGAGC+AGG | - | chr3.2:64512052-64512071 | None:intergenic | 45.0% | |
| ACCCTTAGATGAAAAGGGCT+TGG | - | chr3.2:64511903-64511922 | None:intergenic | 45.0% | |
| AGGAAAATCAGATGGGAGCA+GGG | - | chr3.2:64512051-64512070 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | chr3.2:64511103-64511122 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | chr3.2:64511114-64511133 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | chr3.2:64511123-64511142 | None:intergenic | 45.0% | |
| CATGCTAGCATTTCACCGAA+GGG | - | chr3.2:64513896-64513915 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | chr3.2:64513606-64513625 | MS.gene82038:CDS | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | chr3.2:64513152-64513171 | MS.gene82038:CDS | 45.0% | |
| CCGAACCTGAAATCAACAGT+AGG | - | chr3.2:64514248-64514267 | None:intergenic | 45.0% | |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | chr3.2:64513155-64513174 | None:intergenic | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | chr3.2:64513609-64513628 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | chr3.2:64513600-64513619 | MS.gene82038:CDS | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | chr3.2:64511900-64511919 | None:intergenic | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | chr3.2:64513591-64513610 | None:intergenic | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | chr3.2:64513621-64513640 | MS.gene82038:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | chr3.2:64513627-64513646 | MS.gene82038:CDS | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | chr3.2:64513897-64513916 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | chr3.2:64513592-64513611 | None:intergenic | 45.0% | |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | chr3.2:64511899-64511918 | MS.gene82038:intron | 45.0% |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | chr3.2:64511904-64511923 | MS.gene82038:intron | 45.0% |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | chr3.2:64513661-64513680 | MS.gene82038:CDS | 45.0% |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | chr3.2:64512150-64512169 | MS.gene82038:intron | 45.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | chr3.2:64513687-64513706 | MS.gene82038:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | chr3.2:64513220-64513239 | MS.gene82038:intron | 50.0% | |
| GCAGGCAGAGAAGATAGGTT+TGG | + | chr3.2:64513056-64513075 | MS.gene82038:intron | 50.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | chr3.2:64510970-64510989 | MS.gene82038:CDS | 50.0% | |
| GGCAGTGATTGGAATGAGAG+AGG | + | chr3.2:64511757-64511776 | MS.gene82038:intron | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | chr3.2:64513197-64513216 | None:intergenic | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr3.2:64513200-64513219 | MS.gene82038:CDS | 50.0% | |
| ! | AGTTTTGCTGAGCTGAGAGC+AGG | + | chr3.2:64511735-64511754 | MS.gene82038:intron | 50.0% |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | chr3.2:64511898-64511917 | MS.gene82038:intron | 50.0% |
| ! | GTTTTGCTGAGCTGAGAGCA+GGG | + | chr3.2:64511736-64511755 | MS.gene82038:intron | 50.0% |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | chr3.2:64513660-64513679 | MS.gene82038:CDS | 50.0% |
| AGACCAGGACCCAAAAGACG+GGG | - | chr3.2:64513195-64513214 | None:intergenic | 55.0% | |
| AGATGCCCAACACGTCGAAG+AGG | + | chr3.2:64511152-64511171 | MS.gene82038:CDS | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | chr3.2:64512319-64512338 | MS.gene82038:intron | 55.0% | |
| CTCTGCATGGGAGTAGCTGT+GGG | + | chr3.2:64513673-64513692 | MS.gene82038:CDS | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | chr3.2:64511768-64511787 | MS.gene82038:intron | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | chr3.2:64513196-64513215 | None:intergenic | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | chr3.2:64511783-64511802 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr3.2:64513210-64513229 | None:intergenic | 55.0% |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | chr3.2:64513189-64513208 | MS.gene82038:CDS | 55.0% |
| GCTCTGCATGGGAGTAGCTG+TGG | + | chr3.2:64513672-64513691 | MS.gene82038:CDS | 60.0% | |
| GCTGAGAGCAGGGCAGTGAT+TGG | + | chr3.2:64511746-64511765 | MS.gene82038:intron | 60.0% | |
| GGAATGAGAGAGGCCTCGAG+TGG | + | chr3.2:64511767-64511786 | MS.gene82038:intron | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr3.2:64513204-64513223 | MS.gene82038:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 64510807 | 64514315 | 64510807 | ID=MS.gene82038 |
| chr3.2 | mRNA | 64510807 | 64514315 | 64510807 | ID=MS.gene82038.t1;Parent=MS.gene82038 |
| chr3.2 | exon | 64510807 | 64510811 | 64510807 | ID=MS.gene82038.t1.exon1;Parent=MS.gene82038.t1 |
| chr3.2 | CDS | 64510807 | 64510811 | 64510807 | ID=cds.MS.gene82038.t1;Parent=MS.gene82038.t1 |
| chr3.2 | exon | 64510954 | 64511173 | 64510954 | ID=MS.gene82038.t1.exon2;Parent=MS.gene82038.t1 |
| chr3.2 | CDS | 64510954 | 64511173 | 64510954 | ID=cds.MS.gene82038.t1;Parent=MS.gene82038.t1 |
| chr3.2 | exon | 64513060 | 64513225 | 64513060 | ID=MS.gene82038.t1.exon3;Parent=MS.gene82038.t1 |
| chr3.2 | CDS | 64513060 | 64513225 | 64513060 | ID=cds.MS.gene82038.t1;Parent=MS.gene82038.t1 |
| chr3.2 | exon | 64513581 | 64513786 | 64513581 | ID=MS.gene82038.t1.exon4;Parent=MS.gene82038.t1 |
| chr3.2 | CDS | 64513581 | 64513786 | 64513581 | ID=cds.MS.gene82038.t1;Parent=MS.gene82038.t1 |
| chr3.2 | exon | 64514262 | 64514315 | 64514262 | ID=MS.gene82038.t1.exon5;Parent=MS.gene82038.t1 |
| chr3.2 | CDS | 64514262 | 64514315 | 64514262 | ID=cds.MS.gene82038.t1;Parent=MS.gene82038.t1 |
| Gene Sequence |
| Protein sequence |
