AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35416.t1 MTR_2g086500 100.000 216 0 0 1 216 1 216 3.83e-159 438
MS.gene35416.t1 MTR_5g012930 99.074 216 2 0 1 216 1 216 5.64e-158 436
MS.gene35416.t1 MTR_3g070930 98.611 216 3 0 1 216 1 216 1.87e-157 434
MS.gene35416.t1 MTR_3g070930 97.692 130 3 0 1 130 1 130 1.64e-89 260
MS.gene35416.t1 MTR_1g098350 72.527 91 4 1 39 129 47 116 2.30e-20 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35416.t1 AT1G08360 89.815 216 22 0 1 216 1 216 7.05e-130 365
MS.gene35416.t1 AT2G27530 89.352 216 23 0 1 216 1 216 3.57e-129 363
MS.gene35416.t1 AT2G27530 89.352 216 23 0 1 216 1 216 3.57e-129 363
MS.gene35416.t1 AT5G22440 89.862 217 21 1 1 216 1 217 8.15e-128 359
MS.gene35416.t1 AT5G22440 89.862 217 21 1 1 216 1 217 8.15e-128 359

Find 46 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACACTCAGTTGTACATTT+TGG 0.245739 2.1:+15607785 None:intergenic
TAAGCAAATTCCTCGGCTTT+TGG 0.248004 2.1:-15608385 MS.gene35416:CDS
TAAGAAACTGGTGAAGAAAT+TGG 0.278623 2.1:-15608448 MS.gene35416:CDS
CCTTGGCCTCAAGAGATTCT+TGG 0.283166 2.1:+15607905 None:intergenic
AACAGCTTCAGAAGCTAAAA+AGG 0.292055 2.1:+15608410 None:intergenic
AAGCATGCAAATCTTCATCT+TGG 0.411943 2.1:+15609064 None:intergenic
ATACTGTAGGCTGAGAAAAT+AGG 0.420144 2.1:-15608516 MS.gene35416:intron
CTGGAACTTGACCATGGCCT+TGG 0.431931 2.1:+15607873 None:intergenic
GGCCTTGGTCTCATTTACCT+TGG 0.435008 2.1:+15607888 None:intergenic
GCTGTGAGAGAAGCTATTAC+AGG 0.444577 2.1:-15609221 MS.gene35416:CDS
AGCTGTTGGCAATGTCAGTA+TGG 0.454854 2.1:-15607824 MS.gene35416:CDS
TGCACAGCACTTTCTTAAGC+TGG 0.456962 2.1:+15607854 None:intergenic
GAGACTATTGAACTCCAGAT+TGG 0.463448 2.1:-15609158 MS.gene35416:CDS
CGTAGTTCTTAAGACCAATC+TGG 0.467027 2.1:+15609144 None:intergenic
AAGATGAAGATTTGCATGCT+TGG 0.474267 2.1:-15609062 MS.gene35416:CDS
AGCATGCAAATCTTCATCTT+GGG 0.497546 2.1:+15609065 None:intergenic
TAAGAACTACGACCCACAAA+AGG 0.507014 2.1:-15609132 MS.gene35416:CDS
AGAAGCTATTACAGGAATCA+TGG 0.507152 2.1:-15609213 MS.gene35416:CDS
CTTGTATCTCAAAAGTTCCA+TGG 0.508906 2.1:-15607201 MS.gene35416:CDS
GTAGGCTGAGAAAATAGGAT+TGG 0.517891 2.1:-15608511 MS.gene35416:intron
CCAAGAATCTCTTGAGGCCA+AGG 0.518576 2.1:-15607905 MS.gene35416:CDS
CTTGGTGGGAAACAAGAGTT+GGG 0.519768 2.1:+15607923 None:intergenic
TCTTGGTGGGAAACAAGAGT+TGG 0.522569 2.1:+15607922 None:intergenic
GAAAATAGGATTGGAATCGA+TGG 0.526298 2.1:-15608502 MS.gene35416:CDS
AGGAATCATGGCTGATTCCA+AGG 0.534020 2.1:-15609201 MS.gene35416:CDS
TGGCCTCAAGAGATTCTTGG+TGG 0.549788 2.1:+15607908 None:intergenic
CAAATCTTCATCTTGGGTCG+AGG 0.562426 2.1:+15609071 None:intergenic
GGTCCTGGTCTCAACAAGGC+AGG 0.563119 2.1:-15608363 MS.gene35416:intron
CTGTTATTAAGCAAATTCCT+CGG 0.572203 2.1:-15608392 MS.gene35416:CDS
TTTGGGTCCTGGTCTCAACA+AGG 0.572628 2.1:-15608367 MS.gene35416:CDS
GCTTAAGAAAGTGCTGTGCA+TGG 0.574345 2.1:-15607851 MS.gene35416:CDS
CTTAAGAAAGTGCTGTGCAT+GGG 0.577992 2.1:-15607850 MS.gene35416:CDS
CTTAAGCTGGAACTTGACCA+TGG 0.589652 2.1:+15607867 None:intergenic
TTGTATCTCAAAAGTTCCAT+GGG 0.590539 2.1:-15607200 MS.gene35416:CDS
CAAAAGGATAAGCGTTTCAG+TGG 0.592129 2.1:-15609116 MS.gene35416:CDS
ATCTTGGGTCGAGGAATGTG+AGG 0.608945 2.1:+15609080 None:intergenic
GGCCTCAAGAGATTCTTGGT+GGG 0.614704 2.1:+15607909 None:intergenic
TGGAGATGCTCAGCATGTTG+AGG 0.621445 2.1:-15609042 MS.gene35416:CDS
GGTAAATGAGACCAAGGCCA+TGG 0.622898 2.1:-15607884 MS.gene35416:CDS
ATGCCTGCCTTGTTGAGACC+AGG 0.624246 2.1:+15608360 None:intergenic
AGATGCTCAGCATGTTGAGG+AGG 0.663333 2.1:-15609039 MS.gene35416:intron
TTCCCACCAAGAATCTCTTG+AGG 0.663873 2.1:-15607911 MS.gene35416:CDS
GGCCAAGGTAAATGAGACCA+AGG 0.664747 2.1:-15607890 MS.gene35416:CDS
CTGTGCATGGGAGTAGCTGT+TGG 0.665133 2.1:-15607838 MS.gene35416:CDS
AGACCAGGACCCAAAAGCCG+AGG 0.667775 2.1:+15608375 None:intergenic
GACACGGTAAGATTTGCCCA+TGG 0.686850 2.1:+15607184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATTATAAAACATATTT+CGG + chr2.1:15607390-15607409 None:intergenic 10.0%
!! ATATTTAGAAAAATCTCTAT+TGG - chr2.1:15608057-15608076 MS.gene35416:intron 15.0%
!! ATTAATTGAAAGTAAACAAT+GGG - chr2.1:15607538-15607557 MS.gene35416:intron 15.0%
!! CAAATTAAATAAATATTCCA+AGG + chr2.1:15609563-15609582 None:intergenic 15.0%
!! CTTGGAATATTTATTTAATT+TGG - chr2.1:15609561-15609580 MS.gene35416:intron 15.0%
!! TATTAATTGAAAGTAAACAA+TGG - chr2.1:15607537-15607556 MS.gene35416:intron 15.0%
!! TTTACTCTAACAAAATAAAA+TGG + chr2.1:15609226-15609245 None:intergenic 15.0%
!!! ATATGTATAGAATGTTTTTA+GGG - chr2.1:15608615-15608634 MS.gene35416:intron 15.0%
!!! TATATGTATAGAATGTTTTT+AGG - chr2.1:15608614-15608633 MS.gene35416:intron 15.0%
!!! TGTTTTATAATAGAACATTA+TGG - chr2.1:15607395-15607414 MS.gene35416:intron 15.0%
!! AACTAAAACAGTATTTACTA+CGG + chr2.1:15609396-15609415 None:intergenic 20.0%
!! TTAATTGAAAGTAAACAATG+GGG - chr2.1:15607539-15607558 MS.gene35416:intron 20.0%
!!! AAAATTGAAACTTGATAACA+AGG + chr2.1:15609477-15609496 None:intergenic 20.0%
!!! ATTGACTTATTTTCTGAAAT+AGG - chr2.1:15607990-15608009 MS.gene35416:intron 20.0%
!!! CTATTTGATTTGATTTTTGT+TGG - chr2.1:15607959-15607978 MS.gene35416:intron 20.0%
!!! TGTCTTTAATTTAGTTTTGA+TGG - chr2.1:15608209-15608228 MS.gene35416:intron 20.0%
!!! TTTTATTCTTTTGGGTTTTT+TGG - chr2.1:15608502-15608521 MS.gene35416:CDS 20.0%
! AAAAGTTTACATTAGATGGA+TGG + chr2.1:15609596-15609615 None:intergenic 25.0%
! AAGCTAAGAAAATGTGAAAA+TGG + chr2.1:15607207-15607226 None:intergenic 25.0%
! AATGTAAGTATTTCATACCA+TGG - chr2.1:15609109-15609128 MS.gene35416:CDS 25.0%
! AATTCAAAAGGAACATGTTA+TGG + chr2.1:15608835-15608854 None:intergenic 25.0%
! ACGTCAAAACATAAAATAGA+CGG + chr2.1:15609156-15609175 None:intergenic 25.0%
! ATATTATGTCATGTGAAAGA+AGG + chr2.1:15608041-15608060 None:intergenic 25.0%
! ATATTTACCCATCAAGAAAT+TGG + chr2.1:15608683-15608702 None:intergenic 25.0%
! CAACAAAAGTTTACATTAGA+TGG + chr2.1:15609600-15609619 None:intergenic 25.0%
! GCTAAACAAAAATAAGAAAC+TGG - chr2.1:15608376-15608395 MS.gene35416:CDS 25.0%
! TACTTGATTGAGAAACTATT+AGG - chr2.1:15607339-15607358 MS.gene35416:intron 25.0%
! TTTCAACAAAAGGTTATTTG+AGG + chr2.1:15609443-15609462 None:intergenic 25.0%
!! CAATAGTCTCAACAAATTTT+CGG + chr2.1:15607668-15607687 None:intergenic 25.0%
!! CATCTAATGTAAACTTTTGT+TGG - chr2.1:15609598-15609617 MS.gene35416:intron 25.0%
!!! GCATTTTTTATTGAAGAGTT+TGG - chr2.1:15609417-15609436 MS.gene35416:intron 25.0%
AAAAATATCCAAATCAGCCT+AGG + chr2.1:15608873-15608892 None:intergenic 30.0%
AAAGCAATGACTTTAATCCA+TGG + chr2.1:15609129-15609148 None:intergenic 30.0%
AATTGTAAGACACCAAAATG+AGG + chr2.1:15607930-15607949 None:intergenic 30.0%
ATTGTAAGACACCAAAATGA+GGG + chr2.1:15607929-15607948 None:intergenic 30.0%
CTAACTAAACGAAAAAGAAG+CGG + chr2.1:15608792-15608811 None:intergenic 30.0%
CTGTTATTAAGCAAATTCCT+CGG - chr2.1:15608444-15608463 MS.gene35416:CDS 30.0%
GGCAATAACTGAAATTCAAA+AGG + chr2.1:15608847-15608866 None:intergenic 30.0%
TAACAGTATGTTTGAACACA+AGG + chr2.1:15608745-15608764 None:intergenic 30.0%
TAACTAAACGAAAAAGAAGC+GGG + chr2.1:15608791-15608810 None:intergenic 30.0%
TAAGAAACTGGTGAAGAAAT+TGG - chr2.1:15608388-15608407 MS.gene35416:CDS 30.0%
TATCCTTGTTGAAAAAGAAC+TGG - chr2.1:15609083-15609102 MS.gene35416:CDS 30.0%
TGTATCCAACAAAAACAGTT+TGG + chr2.1:15607842-15607861 None:intergenic 30.0%
TTGGATGATGAGCAATAATA+GGG - chr2.1:15609191-15609210 MS.gene35416:CDS 30.0%
TTGTATCTCAAAAGTTCCAT+GGG - chr2.1:15609636-15609655 MS.gene35416:intron 30.0%
TTTGGATGATGAGCAATAAT+AGG - chr2.1:15609190-15609209 MS.gene35416:CDS 30.0%
! AAATTTTCGGTTTTTCTCCT+TGG + chr2.1:15607655-15607674 None:intergenic 30.0%
! ACTGCTACATTTTCAACAAA+AGG + chr2.1:15609453-15609472 None:intergenic 30.0%
! AGTCTTTGACTTTAGATTAC+AGG - chr2.1:15609357-15609376 MS.gene35416:intron 30.0%
! TAAATCAATTTTGTCAGTCG+TGG + chr2.1:15608166-15608185 None:intergenic 30.0%
! TTGTTTACTCTTAAGTTGCT+AGG + chr2.1:15608717-15608736 None:intergenic 30.0%
!! AGGCATGTGTTTTATTCTTT+TGG - chr2.1:15608493-15608512 MS.gene35416:CDS 30.0%
!! CAAGCTTTTTCCCAATAAAT+GGG + chr2.1:15607444-15607463 None:intergenic 30.0%
!! GACATCAATTTGTTGATTTG+TGG + chr2.1:15608193-15608212 None:intergenic 30.0%
!! GGCATGTGTTTTATTCTTTT+GGG - chr2.1:15608494-15608513 MS.gene35416:CDS 30.0%
!!! TGTAAACTTTTGTTGGTTTC+AGG - chr2.1:15609605-15609624 MS.gene35416:intron 30.0%
AACAGCTTCAGAAGCTAAAA+AGG + chr2.1:15608429-15608448 None:intergenic 35.0%
AACTAAACGAAAAAGAAGCG+GGG + chr2.1:15608790-15608809 None:intergenic 35.0%
AAGATGAAGATTTGCATGCT+TGG - chr2.1:15607774-15607793 MS.gene35416:CDS 35.0%
AAGCATGCAAATCTTCATCT+TGG + chr2.1:15607775-15607794 None:intergenic 35.0%
AGAAGCTATTACAGGAATCA+TGG - chr2.1:15607623-15607642 MS.gene35416:intron 35.0%
AGCATGCAAATCTTCATCTT+GGG + chr2.1:15607774-15607793 None:intergenic 35.0%
ATACTGTAGGCTGAGAAAAT+AGG - chr2.1:15608320-15608339 MS.gene35416:intron 35.0%
ATGTAAACTTGAATACAGCC+AGG + chr2.1:15608641-15608660 None:intergenic 35.0%
CACGTCAAACTGTAAATAGA+CGG + chr2.1:15609264-15609283 None:intergenic 35.0%
CACTCTAATATGCATACTGT+AGG - chr2.1:15608307-15608326 MS.gene35416:intron 35.0%
CCATTTATTGGGAAAAAGCT+TGG - chr2.1:15607442-15607461 MS.gene35416:intron 35.0%
CTTGTATCTCAAAAGTTCCA+TGG - chr2.1:15609635-15609654 MS.gene35416:intron 35.0%
GAAAATAGGATTGGAATCGA+TGG - chr2.1:15608334-15608353 MS.gene35416:intron 35.0%
GACTTTAGATTACAGGCAAT+AGG - chr2.1:15609364-15609383 MS.gene35416:intron 35.0%
TCAAAAGGAACATGTTATGG+CGG + chr2.1:15608832-15608851 None:intergenic 35.0%
TCTATTTACAGTTTGACGTG+TGG - chr2.1:15609264-15609283 MS.gene35416:intron 35.0%
TTGGAGGAAGAACAATAACA+GGG - chr2.1:15609298-15609317 MS.gene35416:intron 35.0%
TTTGGAGGAAGAACAATAAC+AGG - chr2.1:15609297-15609316 MS.gene35416:intron 35.0%
! ACTAAAGCACTATTGCTTAG+CGG - chr2.1:15608103-15608122 MS.gene35416:intron 35.0%
! CTTTTTCCCAATAAATGGGT+CGG + chr2.1:15607440-15607459 None:intergenic 35.0%
! GTGCATTATTACCCTCATTT+TGG - chr2.1:15607915-15607934 MS.gene35416:CDS 35.0%
! TGAAACGCTTATCCTTTTGT+GGG + chr2.1:15607719-15607738 None:intergenic 35.0%
! TGACACTCAGTTGTACATTT+TGG + chr2.1:15609054-15609073 None:intergenic 35.0%
! TTGTCATTGTTGAGTTTGCT+TGG - chr2.1:15607477-15607496 MS.gene35416:intron 35.0%
!! CCAAGCTTTTTCCCAATAAA+TGG + chr2.1:15607445-15607464 None:intergenic 35.0%
!!! ACTTTTGTTGGTTTCAGGTT+AGG - chr2.1:15609610-15609629 MS.gene35416:intron 35.0%
!!! TATAGAATGTTTTTAGGGCC+TGG - chr2.1:15608620-15608639 MS.gene35416:intron 35.0%
!!! TCTTTTTCAACAAGGATACG+AGG + chr2.1:15609081-15609100 None:intergenic 35.0%
!!! TGTAGCCAAACTGTTTTTGT+TGG - chr2.1:15607834-15607853 MS.gene35416:CDS 35.0%
!!! TTGCCAGTTCTTTTTCAACA+AGG + chr2.1:15609089-15609108 None:intergenic 35.0%
ACACCTCACCAATTTCTTGA+TGG - chr2.1:15608672-15608691 MS.gene35416:intron 40.0%
ACGTGATGCATCATTGGATT+TGG - chr2.1:15609172-15609191 MS.gene35416:CDS 40.0%
AGAAAGATGCACAAAACACG+TGG + chr2.1:15608588-15608607 None:intergenic 40.0%
ATCAAGAAATTGGTGAGGTG+TGG + chr2.1:15608673-15608692 None:intergenic 40.0%
CAAAAGGATAAGCGTTTCAG+TGG - chr2.1:15607720-15607739 MS.gene35416:intron 40.0%
CACCTCACCAATTTCTTGAT+GGG - chr2.1:15608673-15608692 MS.gene35416:intron 40.0%
CGTAGTTCTTAAGACCAATC+TGG + chr2.1:15607695-15607714 None:intergenic 40.0%
CTTCAGAAGCTAAAAAGGCA+TGG + chr2.1:15608424-15608443 None:intergenic 40.0%
GAAAGATGCACAAAACACGT+GGG + chr2.1:15608587-15608606 None:intergenic 40.0%
GAGACTATTGAACTCCAGAT+TGG - chr2.1:15607678-15607697 MS.gene35416:intron 40.0%
GGATACACGTGTAGTTGAAA+TGG - chr2.1:15607855-15607874 MS.gene35416:CDS 40.0%
GTAGGCTGAGAAAATAGGAT+TGG - chr2.1:15608325-15608344 MS.gene35416:intron 40.0%
GTTTACATTAGATGGATGGC+AGG + chr2.1:15609592-15609611 None:intergenic 40.0%
TAAGAACTACGACCCACAAA+AGG - chr2.1:15607704-15607723 MS.gene35416:intron 40.0%
TACCCATCAAGAAATTGGTG+AGG + chr2.1:15608678-15608697 None:intergenic 40.0%
TCAAGAAATTGGTGAGGTGT+GGG + chr2.1:15608672-15608691 None:intergenic 40.0%
TTTCAGTTATTGCCTTGCCT+AGG - chr2.1:15608853-15608872 MS.gene35416:intron 40.0%
! AAGCAAATTCCTCGGCTTTT+GGG - chr2.1:15608452-15608471 MS.gene35416:CDS 40.0%
! CTGAAACGCTTATCCTTTTG+TGG + chr2.1:15607720-15607739 None:intergenic 40.0%
! TAAGCAAATTCCTCGGCTTT+TGG - chr2.1:15608451-15608470 MS.gene35416:CDS 40.0%
!! CTTAAGAAAGTGCTGTGCAT+GGG - chr2.1:15608986-15609005 MS.gene35416:intron 40.0%
!! GTTTTGACGTGATGCATCAT+TGG - chr2.1:15609166-15609185 MS.gene35416:CDS 40.0%
!!! GATATTTTTTGTCCCTCTGC+AGG - chr2.1:15608884-15608903 MS.gene35416:intron 40.0%
AAACGAAAAAGAAGCGGGGT+TGG + chr2.1:15608786-15608805 None:intergenic 45.0%
AATCTCTATTGGTCCGCGAT+AGG - chr2.1:15608068-15608087 MS.gene35416:intron 45.0%
ACGTGTGGCATCATTGGATT+TGG - chr2.1:15609279-15609298 MS.gene35416:intron 45.0%
AGCTGTTGGCAATGTCAGTA+TGG - chr2.1:15609012-15609031 MS.gene35416:intron 45.0%
AGTTTGACGTGTGGCATCAT+TGG - chr2.1:15609273-15609292 MS.gene35416:intron 45.0%
CAAATCTTCATCTTGGGTCG+AGG + chr2.1:15607768-15607787 None:intergenic 45.0%
CTTAAGCTGGAACTTGACCA+TGG + chr2.1:15608972-15608991 None:intergenic 45.0%
CTTGGTGGGAAACAAGAGTT+GGG + chr2.1:15608916-15608935 None:intergenic 45.0%
GCTGTGAGAGAAGCTATTAC+AGG - chr2.1:15607615-15607634 MS.gene35416:intron 45.0%
GTGTAGCCGACCCATTTATT+GGG - chr2.1:15607431-15607450 MS.gene35416:intron 45.0%
TATCCAAATCAGCCTAGGCA+AGG + chr2.1:15608868-15608887 None:intergenic 45.0%
TCTTGGTGGGAAACAAGAGT+TGG + chr2.1:15608917-15608936 None:intergenic 45.0%
TGCACAGCACTTTCTTAAGC+TGG + chr2.1:15608985-15609004 None:intergenic 45.0%
TGCCACTAAATAGCCTATCG+CGG + chr2.1:15608084-15608103 None:intergenic 45.0%
TGTGGCATCATTGGATTTGG+AGG - chr2.1:15609282-15609301 MS.gene35416:intron 45.0%
TGTGTAGCCGACCCATTTAT+TGG - chr2.1:15607430-15607449 MS.gene35416:intron 45.0%
TTCCCACCAAGAATCTCTTG+AGG - chr2.1:15608925-15608944 MS.gene35416:intron 45.0%
! AGGAATCATGGCTGATTCCA+AGG - chr2.1:15607635-15607654 MS.gene35416:intron 45.0%
!! GCTTAAGAAAGTGCTGTGCA+TGG - chr2.1:15608985-15609004 MS.gene35416:intron 45.0%
AGATGCTCAGCATGTTGAGG+AGG - chr2.1:15607797-15607816 MS.gene35416:CDS 50.0%
AGTTGGGAACTTTCCTGCAG+AGG + chr2.1:15608900-15608919 None:intergenic 50.0%
ATCTTGGGTCGAGGAATGTG+AGG + chr2.1:15607759-15607778 None:intergenic 50.0%
CCAAGAATCTCTTGAGGCCA+AGG - chr2.1:15608931-15608950 MS.gene35416:intron 50.0%
CCTTGGCCTCAAGAGATTCT+TGG + chr2.1:15608934-15608953 None:intergenic 50.0%
GACACGGTAAGATTTGCCCA+TGG + chr2.1:15609655-15609674 None:intergenic 50.0%
GGCCAAGGTAAATGAGACCA+AGG - chr2.1:15608946-15608965 MS.gene35416:intron 50.0%
GGCCTCAAGAGATTCTTGGT+GGG + chr2.1:15608930-15608949 None:intergenic 50.0%
GGCCTTGGTCTCATTTACCT+TGG + chr2.1:15608951-15608970 None:intergenic 50.0%
GGTAAATGAGACCAAGGCCA+TGG - chr2.1:15608952-15608971 MS.gene35416:intron 50.0%
GTCCGCGATAGGCTATTTAG+TGG - chr2.1:15608079-15608098 MS.gene35416:intron 50.0%
GTTGGGAACTTTCCTGCAGA+GGG + chr2.1:15608899-15608918 None:intergenic 50.0%
TGCTCTTCTGTTCTCTGCCT+TGG - chr2.1:15609543-15609562 MS.gene35416:intron 50.0%
TGGAGATGCTCAGCATGTTG+AGG - chr2.1:15607794-15607813 MS.gene35416:CDS 50.0%
TGGCCTCAAGAGATTCTTGG+TGG + chr2.1:15608931-15608950 None:intergenic 50.0%
TTGCCTTGCCTAGGCTGATT+TGG - chr2.1:15608862-15608881 MS.gene35416:intron 50.0%
TTTGGGTCCTGGTCTCAACA+AGG - chr2.1:15608469-15608488 MS.gene35416:CDS 50.0%
CGAAAAAGAAGCGGGGTTGG+CGG + chr2.1:15608783-15608802 None:intergenic 55.0%
CTGGAACTTGACCATGGCCT+TGG + chr2.1:15608966-15608985 None:intergenic 55.0%
CTGTGCATGGGAGTAGCTGT+TGG - chr2.1:15608998-15609017 MS.gene35416:intron 55.0%
! ATGCCTGCCTTGTTGAGACC+AGG + chr2.1:15608479-15608498 None:intergenic 55.0%
!! ATTCCTCGGCTTTTGGGTCC+TGG - chr2.1:15608458-15608477 MS.gene35416:CDS 55.0%
AGACCAGGACCCAAAAGCCG+AGG + chr2.1:15608464-15608483 None:intergenic 60.0%
GGTCCTGGTCTCAACAAGGC+AGG - chr2.1:15608473-15608492 MS.gene35416:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 15607178 15609680 15607178 ID=MS.gene35416
chr2.1 mRNA 15607178 15609680 15607178 ID=MS.gene35416.t1;Parent=MS.gene35416
chr2.1 exon 15609676 15609680 15609676 ID=MS.gene35416.t1.exon1;Parent=MS.gene35416.t1
chr2.1 CDS 15609676 15609680 15609676 ID=cds.MS.gene35416.t1;Parent=MS.gene35416.t1
chr2.1 exon 15609040 15609259 15609040 ID=MS.gene35416.t1.exon2;Parent=MS.gene35416.t1
chr2.1 CDS 15609040 15609259 15609040 ID=cds.MS.gene35416.t1;Parent=MS.gene35416.t1
chr2.1 exon 15608364 15608529 15608364 ID=MS.gene35416.t1.exon3;Parent=MS.gene35416.t1
chr2.1 CDS 15608364 15608529 15608364 ID=cds.MS.gene35416.t1;Parent=MS.gene35416.t1
chr2.1 exon 15607747 15607952 15607747 ID=MS.gene35416.t1.exon4;Parent=MS.gene35416.t1
chr2.1 CDS 15607747 15607952 15607747 ID=cds.MS.gene35416.t1;Parent=MS.gene35416.t1
chr2.1 exon 15607178 15607231 15607178 ID=MS.gene35416.t1.exon5;Parent=MS.gene35416.t1
chr2.1 CDS 15607178 15607231 15607178 ID=cds.MS.gene35416.t1;Parent=MS.gene35416.t1
Gene Sequence

>MS.gene35416

ATGAGGTATTTTTTTCTTCTATTTGTCCATTTTCACATTTTCTTAGCTTTTTTTCTTCATAAAGTTATATACAATTTGTTGTTTTTCATTGATAATTTAACTTTAGTTCTATTAGCTTTTGATCGTGTTAGTGAAAATAATTCAATAATTGTTGTTTTTCTTACTTGATTGAGAAACTATTAGGAAAGATTTGAAAACTAATGAGTTGACCGAAATATGTTTTATAATAGAACATTATGGCGTAATTTGATCTGTGTAGCCGACCCATTTATTGGGAAAAAGCTTGGTTGTTGTTTTTGTTGTCATTGTTGAGTTTGCTTGGTTTAATGTATTTATGATTTATATTGTGTTAATGAAAGTATTAATTGAAAGTAAACAATGGGGTACTTAAAGATTTAATGTTTTTGATGTGACTTTGCAGTAAGCTTCAAAGTGAAGCTGTGAGAGAAGCTATTACAGGAATCATGGCTGATTCCAAGGAGAAAAACCGAAAATTTGTTGAGACTATTGAACTCCAGATTGGTCTTAAGAACTACGACCCACAAAAGGATAAGCGTTTCAGTGGTTCTGTCAAATTGCCTCACATTCCTCGACCCAAGATGAAGATTTGCATGCTTGGAGATGCTCAGCATGTTGAGGAGGTAATGATCTGATGTTGTAGCCAAACTGTTTTTGTTGGATACACGTGTAGTTGAAATGGTTAATGCTTGATTGAAGTGAATTTGAGTTTCAAATGTGTGCATTATTACCCTCATTTTGGTGTCTTACAATTTATTTTGTGCTATTTGATTTGATTTTTGTTGGTTGCTAGTATTGACTTATTTTCTGAAATAGGCTGAAACGATGACATAATATTTTTGCCTTCTTTCACATGACATAATATTTAGAAAAATCTCTATTGGTCCGCGATAGGCTATTTAGTGGCACTAAAGCACTATTGCTTAGCGGAATTTTAGCAATCTGCTATTTTCTGCTATACACGAGTCCACGACTGACAAAATTGATTTAGTAACCACAAATCAACAAATTGATGTCTTTAATTTAGTTTTGATGGTAGTGATTTTGCATTATGTGCTGAAGATCATTTTGAATATTTGTTTGTTGCTAAGTTTCTTGTGTTAATGTCTTACACTCTAATATGCATACTGTAGGCTGAGAAAATAGGATTGGAATCGATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTTATTAAGCAAATTCCTCGGCTTTTGGGTCCTGGTCTCAACAAGGCAGGCATGTGTTTTATTCTTTTGGGTTTTTTGGATTTTATTATTATTATCATCATCATCTGTTTTGCATTGCTGTCTTTTTCTTTATACTTTCCCACGTGTTTTGTGCATCTTTCTTGTTTCTATATGTATAGAATGTTTTTAGGGCCTGGCTGTATTCAAGTTTACATTGTGTTCACCCACACCTCACCAATTTCTTGATGGGTAAATATCAGTCAGATTGCCTAGCAACTTAAGAGTAAACAATTGTGCCTTGTGTTCAAACATACTGTTACATTACTTTAAAGAACCGCCAACCCCGCTTCTTTTTCGTTTAGTTAGCAGCTTATTTCAAAGAACCGCCATAACATGTTCCTTTTGAATTTCAGTTATTGCCTTGCCTAGGCTGATTTGGATATTTTTTGTCCCTCTGCAGGAAAGTTCCCAACTCTTGTTTCCCACCAAGAATCTCTTGAGGCCAAGGTAAATGAGACCAAGGCCATGGTCAAGTTCCAGCTTAAGAAAGTGCTGTGCATGGGAGTAGCTGTTGGCAATGTCAGTATGGATGAAAAACAAATCTTCCAAAATGTACAACTGAGTGTCAACTTCCTCGTATCCTTGTTGAAAAAGAACTGGCAAAATGTAAGTATTTCATACCATGGATTAAAGTCATTGCTTTGTTACCGTCTATTTTATGTTTTGACGTGATGCATCATTGGATTTGGATGATGAGCAATAATAGGGCTATAACATCCATTTTATTTTGTTAGAGTAAAATCATTGCTTTGTTACCGTCTATTTACAGTTTGACGTGTGGCATCATTGGATTTGGAGGAAGAACAATAACAGGGCTATAACATACATTTTATTGTGTTATTTAAAGTAATAGTCTTTGACTTTAGATTACAGGCAATAGGCAAAATCCGTAGTAAATACTGTTTTAGTTTGCATTTTTTATTGAAGAGTTTGGCCTCAAATAACCTTTTGTTGAAAATGTAGCAGTACCTTGTTATCAAGTTTCAATTTTCACAATTTATGTTCTTTAGTTGTGCTCGAGTCTTGAGAATTGTTTTTGCTCTTCTGTTCTCTGCCTTGGAATATTTATTTAATTTGGTTGAACCTGCCATCCATCTAATGTAAACTTTTGTTGGTTTCAGGTTAGGTGCTTGTATCTCAAAAGTTCCATGGGCAAATCTTACCGTGTCTTTTAA
Protein sequence

>MS.gene35416.t1

MSKLQSEAVREAITGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF