Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21219.t1 | XP_003611340.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 2.10E-113 | 418.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21219.t1 | Q8VZB9 | 89.8 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 1.6e-104 | 380.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21219.t1 | G7JXE1 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 1.5e-113 | 418.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene21219 | 0.801789 | 7.63E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene21219 | 0.833227 | 6.02E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene21219 | 0.846108 | 2.67E-59 | -1.69E-46 |
| MS.gene050320 | MS.gene21219 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene21219 | 0.832916 | 7.19E-56 | -1.69E-46 |
| MS.gene050916 | MS.gene21219 | 0.825549 | 4.41E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene21219 | 0.846295 | 2.38E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene21219 | 0.83941 | 1.61E-57 | -1.69E-46 |
| MS.gene051687 | MS.gene21219 | 0.83501 | 2.15E-56 | -1.69E-46 |
| MS.gene051700 | MS.gene21219 | 0.829512 | 4.94E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene21219 | 0.887404 | 1.47E-72 | -1.69E-46 |
| MS.gene051748 | MS.gene21219 | 0.86603 | 3.84E-65 | -1.69E-46 |
| MS.gene051850 | MS.gene21219 | 0.854328 | 1.32E-61 | -1.69E-46 |
| MS.gene05188 | MS.gene21219 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene21219 | 0.885076 | 1.11E-71 | -1.69E-46 |
| MS.gene052947 | MS.gene21219 | 0.875193 | 3.74E-68 | -1.69E-46 |
| MS.gene053109 | MS.gene21219 | 0.824784 | 6.69E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene21219 | 0.824266 | 8.86E-54 | -1.69E-46 |
| MS.gene054937 | MS.gene21219 | 0.80819 | 3.50E-50 | -1.69E-46 |
| MS.gene055174 | MS.gene21219 | 0.800164 | 1.64E-48 | -1.69E-46 |
| MS.gene055424 | MS.gene21219 | 0.83489 | 2.31E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene21219 | 0.820087 | 8.26E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene21219 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene21219 | -0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene056075 | MS.gene21219 | 0.855685 | 5.34E-62 | -1.69E-46 |
| MS.gene056091 | MS.gene21219 | 0.85193 | 6.44E-61 | -1.69E-46 |
| MS.gene056403 | MS.gene21219 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene21219 | 0.814047 | 1.88E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene21219 | 0.812349 | 4.43E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene21219 | 0.846565 | 2.01E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene21219 | 0.899603 | 1.68E-77 | -1.69E-46 |
| MS.gene057234 | MS.gene21219 | 0.83442 | 3.03E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene21219 | 0.81024 | 1.27E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene21219 | 0.821756 | 3.41E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene21219 | 0.822455 | 2.35E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene21219 | 0.828584 | 8.29E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene21219 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene059726 | MS.gene21219 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene21219 | 0.915657 | 4.54E-85 | -1.69E-46 |
| MS.gene06011 | MS.gene21219 | 0.845868 | 3.10E-59 | -1.69E-46 |
| MS.gene060429 | MS.gene21219 | 0.834588 | 2.75E-56 | -1.69E-46 |
| MS.gene060586 | MS.gene21219 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene21219 | 0.833034 | 6.72E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene21219 | 0.825154 | 5.47E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21219 | MS.gene35416 | PPI |
| MS.gene21219 | MS.gene82545 | PPI |
| MS.gene21219 | MS.gene031955 | PPI |
| MS.gene21219 | MS.gene82038 | PPI |
| MS.gene21219 | MS.gene034454 | PPI |
| MS.gene21219 | MS.gene84323 | PPI |
| MS.gene21219 | MS.gene09755 | PPI |
| MS.gene21219 | MS.gene09753 | PPI |
| MS.gene21219 | MS.gene43038 | PPI |
| MS.gene21219 | MS.gene008043 | PPI |
| MS.gene21219 | MS.gene015407 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21219.t1 | MTR_5g012930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 2.31e-159 | 439 |
| MS.gene21219.t1 | MTR_2g086500 | 99.074 | 216 | 2 | 0 | 1 | 216 | 1 | 216 | 5.64e-158 | 436 |
| MS.gene21219.t1 | MTR_3g070930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene21219.t1 | MTR_3g070930 | 96.154 | 130 | 5 | 0 | 1 | 130 | 1 | 130 | 2.95e-88 | 257 |
| MS.gene21219.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.79e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21219.t1 | AT1G08360 | 89.815 | 216 | 22 | 0 | 1 | 216 | 1 | 216 | 3.38e-130 | 365 |
| MS.gene21219.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 1.87e-129 | 363 |
| MS.gene21219.t1 | AT2G27530 | 89.352 | 216 | 23 | 0 | 1 | 216 | 1 | 216 | 1.87e-129 | 363 |
| MS.gene21219.t1 | AT5G22440 | 89.401 | 217 | 22 | 1 | 1 | 216 | 1 | 217 | 5.49e-127 | 357 |
| MS.gene21219.t1 | AT5G22440 | 89.401 | 217 | 22 | 1 | 1 | 216 | 1 | 217 | 5.49e-127 | 357 |
Find 43 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACTCAGTTGTACATTT+TGG | 0.198216 | 5.1:+6059005 | None:intergenic |
| CAAACAGATTCCTCGTCTTT+TGG | 0.210825 | 5.1:-6059434 | MS.gene21219:CDS |
| TAAGAAACTGGTGAAGAAAT+TGG | 0.278623 | 5.1:-6059497 | MS.gene21219:CDS |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 5.1:+6059125 | None:intergenic |
| AACAGCTTCAGAGGCTAAAA+AGG | 0.290643 | 5.1:+6059459 | None:intergenic |
| CAATAGTCTCCACAAATTTA+CGG | 0.320435 | 5.1:+6060426 | None:intergenic |
| TTTGGAATCACCCATGATTC+CGG | 0.376846 | 5.1:+6060457 | None:intergenic |
| AGCTGTTGGCAATGTTAGTA+TGG | 0.409393 | 5.1:-6059044 | MS.gene21219:CDS |
| AGAAGCTATTACCGGAATCA+TGG | 0.439289 | 5.1:-6060468 | MS.gene21219:CDS |
| AAGATGAAAATTTGCATGCT+TGG | 0.446340 | 5.1:-6060317 | MS.gene21219:CDS |
| ATATTGTAGGCTGAGAAAAT+AGG | 0.447267 | 5.1:-6059565 | MS.gene21219:intron |
| TGCACAACACTTTCTTGAGC+TGG | 0.451787 | 5.1:+6059074 | None:intergenic |
| TATTACCTCCTCAACATGTT+GGG | 0.453017 | 5.1:+6060289 | None:intergenic |
| GGATAAACGTTTCAGCGGTT+CGG | 0.456511 | 5.1:-6060366 | MS.gene21219:CDS |
| GAGACTATTGAACTCCAGAT+TGG | 0.461376 | 5.1:-6060413 | MS.gene21219:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 5.1:-6059125 | MS.gene21219:CDS |
| GCTGTGAGAGAAGCTATTAC+CGG | 0.513912 | 5.1:-6060476 | MS.gene21219:CDS |
| CTGTTTGATAACAGCTTCAG+AGG | 0.515911 | 5.1:+6059450 | None:intergenic |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 5.1:-6059551 | MS.gene21219:CDS |
| CTTGTATCTGAAGAGCTCCA+TGG | 0.531354 | 5.1:-6058530 | MS.gene21219:CDS |
| TTATTACCTCCTCAACATGT+TGG | 0.532530 | 5.1:+6060288 | None:intergenic |
| ATCTTTGGTCTCGGAATGTG+AGG | 0.537988 | 5.1:+6060335 | None:intergenic |
| TTGTATCTGAAGAGCTCCAT+GGG | 0.538115 | 5.1:-6058529 | MS.gene21219:CDS |
| GGCTAAGGTTAACGAGACTA+AGG | 0.542276 | 5.1:-6059110 | MS.gene21219:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 5.1:-6059560 | MS.gene21219:intron |
| GAAGCTATTACCGGAATCAT+GGG | 0.561503 | 5.1:-6060467 | MS.gene21219:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 5.1:-6059412 | MS.gene21219:intron |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 5.1:+6059128 | None:intergenic |
| CTCAAGAAAGTGTTGTGCAT+GGG | 0.565229 | 5.1:-6059070 | MS.gene21219:CDS |
| GGTTAACGAGACTAAGGCTA+TGG | 0.565310 | 5.1:-6059104 | MS.gene21219:CDS |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 5.1:-6059416 | MS.gene21219:CDS |
| GCTCAAGAAAGTGTTGTGCA+TGG | 0.598477 | 5.1:-6059071 | MS.gene21219:CDS |
| TCTTGGTGGGAAACAAGTGT+AGG | 0.599437 | 5.1:+6059142 | None:intergenic |
| CTTGGTGGGAAACAAGTGTA+GGG | 0.600430 | 5.1:+6059143 | None:intergenic |
| AATCAAGCCTTTAAAAGACT+CGG | 0.601118 | 5.1:+6058497 | None:intergenic |
| TGGTGATGCCCAACATGTTG+AGG | 0.623552 | 5.1:-6060297 | MS.gene21219:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 5.1:+6059409 | None:intergenic |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 5.1:+6059129 | None:intergenic |
| CAAAAGGATAAACGTTTCAG+CGG | 0.645836 | 5.1:-6060371 | MS.gene21219:CDS |
| TTCCCACCAAGAATCTCTTG+AGG | 0.654036 | 5.1:-6059131 | MS.gene21219:CDS |
| TTGTGCATGGGAGTAGCTGT+TGG | 0.683745 | 5.1:-6059058 | MS.gene21219:CDS |
| AGACCAGGACCCAAAAGACG+AGG | 0.696429 | 5.1:+6059424 | None:intergenic |
| TGATGCCCAACATGTTGAGG+AGG | 0.714764 | 5.1:-6060294 | MS.gene21219:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAGCACAAAAATAAA+TGG | + | chr5.1:6059156-6059175 | None:intergenic | 15.0% |
| !!! | CATTTTTATCAAATCATTAT+CGG | + | chr5.1:6058994-6059013 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGTGCTATATTT+TGG | - | chr5.1:6059156-6059175 | MS.gene21219:intron | 15.0% |
| !! | AATAGATTACATTAATTCGA+TGG | + | chr5.1:6060626-6060645 | None:intergenic | 20.0% |
| !! | AATTCCTTATATCAAAATGT+CGG | - | chr5.1:6059071-6059090 | MS.gene21219:CDS | 20.0% |
| !! | TACTAACATAAAACATAAAC+AGG | + | chr5.1:6059872-6059891 | None:intergenic | 20.0% |
| !!! | TAACTGAGATTTGATTTATA+TGG | - | chr5.1:6058628-6058647 | MS.gene21219:intron | 20.0% |
| !!! | TTTAAATTACCAACTGTTTT+TGG | - | chr5.1:6059914-6059933 | MS.gene21219:intron | 20.0% |
| ! | AAACATAAACAGGATATATG+TGG | + | chr5.1:6059862-6059881 | None:intergenic | 25.0% |
| ! | ATTAGTATGTTGTTGAATTG+TGG | + | chr5.1:6059498-6059517 | None:intergenic | 25.0% |
| ! | GAATTAATGTAATCTATTGC+TGG | - | chr5.1:6060628-6060647 | MS.gene21219:intron | 25.0% |
| ! | GATGTTATAGACATATACTT+GGG | + | chr5.1:6060424-6060443 | None:intergenic | 25.0% |
| ! | GCTAAACAAAAATAAGAAAC+TGG | - | chr5.1:6059686-6059705 | MS.gene21219:intron | 25.0% |
| ! | GCTTAAAGAAGCTTAAAAAA+AGG | + | chr5.1:6058560-6058579 | None:intergenic | 25.0% |
| ! | TATGGTGAAAATTGAAAACA+AGG | + | chr5.1:6060531-6060550 | None:intergenic | 25.0% |
| ! | TGATGTTATAGACATATACT+TGG | + | chr5.1:6060425-6060444 | None:intergenic | 25.0% |
| ! | TGCTAAATAAAATGAAGCAA+CGG | + | chr5.1:6059952-6059971 | None:intergenic | 25.0% |
| !! | AAATTTACGGTTTTTCTCTT+TGG | + | chr5.1:6058759-6058778 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGACACTGTT+TGG | + | chr5.1:6059428-6059447 | None:intergenic | 25.0% |
| !! | TTTTCACCATATATGTTCTT+CGG | - | chr5.1:6060540-6060559 | MS.gene21219:intron | 25.0% |
| !!! | CTGCTTTAGAATAAATAATC+TGG | - | chr5.1:6060597-6060616 | MS.gene21219:intron | 25.0% |
| !!! | TGTCTTTCATTTAGTTTTGA+TGG | - | chr5.1:6059517-6059536 | MS.gene21219:CDS | 25.0% |
| AAGATGAAAATTTGCATGCT+TGG | - | chr5.1:6058878-6058897 | MS.gene21219:intron | 30.0% | |
| AGAGAAAAACCGTAAATTTG+TGG | - | chr5.1:6058760-6058779 | MS.gene21219:intron | 30.0% | |
| ATATTGTAGGCTGAGAAAAT+AGG | - | chr5.1:6059630-6059649 | MS.gene21219:intron | 30.0% | |
| ATTGGATGATGAGCAATAAT+AGG | - | chr5.1:6060323-6060342 | MS.gene21219:CDS | 30.0% | |
| CAATAGTCTCCACAAATTTA+CGG | + | chr5.1:6058772-6058791 | None:intergenic | 30.0% | |
| CACTCTAATATGCATATTGT+AGG | - | chr5.1:6059617-6059636 | MS.gene21219:intron | 30.0% | |
| GAAAAACTATGATCCTCAAA+AGG | - | chr5.1:6058808-6058827 | MS.gene21219:intron | 30.0% | |
| TAAGAAACTGGTGAAGAAAT+TGG | - | chr5.1:6059698-6059717 | MS.gene21219:intron | 30.0% | |
| TGTTGAATTGTGGTTACTAA+GGG | + | chr5.1:6059488-6059507 | None:intergenic | 30.0% | |
| TTATAGACATATACTTGGGA+TGG | + | chr5.1:6060420-6060439 | None:intergenic | 30.0% | |
| TTGTTGAATTGTGGTTACTA+AGG | + | chr5.1:6059489-6059508 | None:intergenic | 30.0% | |
| ! | AGCATGCAAATTTTCATCTT+TGG | + | chr5.1:6058878-6058897 | None:intergenic | 30.0% |
| ! | ATTTTACTCGATGTTATGAG+TGG | + | chr5.1:6060263-6060282 | None:intergenic | 30.0% |
| ! | CAAATTTTCATCTTTGGTCT+CGG | + | chr5.1:6058872-6058891 | None:intergenic | 30.0% |
| ! | CTTTGTTACCTTCTATTTTG+TGG | - | chr5.1:6060288-6060307 | MS.gene21219:intron | 30.0% |
| ! | TAACACTCAGTTGTACATTT+TGG | + | chr5.1:6060193-6060212 | None:intergenic | 30.0% |
| !! | CATAGTTTTTCAAACCAATC+TGG | + | chr5.1:6058799-6058818 | None:intergenic | 30.0% |
| !! | CTTCATTTTATTTAGCAACC+AGG | - | chr5.1:6059955-6059974 | MS.gene21219:intron | 30.0% |
| !! | TTTCGTTGTAAATGCTGTTT+TGG | - | chr5.1:6060452-6060471 | MS.gene21219:CDS | 30.0% |
| AAGTAATAGTCCGACATTAG+AGG | - | chr5.1:6060379-6060398 | MS.gene21219:CDS | 35.0% | |
| AGACAAGTAGAATAAGAGAG+AGG | + | chr5.1:6058530-6058549 | None:intergenic | 35.0% | |
| AGCTCAAGCAACAATTGAAA+TGG | + | chr5.1:6059997-6060016 | None:intergenic | 35.0% | |
| CAAAAAAATATCCCATGCTC+CGG | + | chr5.1:6059557-6059576 | None:intergenic | 35.0% | |
| CAAAAGGATAAACGTTTCAG+CGG | - | chr5.1:6058824-6058843 | MS.gene21219:intron | 35.0% | |
| CAATTCAGCAATAACTACCT+CGG | + | chr5.1:6059102-6059121 | None:intergenic | 35.0% | |
| CATCATCACCACAAAATAGA+AGG | + | chr5.1:6060299-6060318 | None:intergenic | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | - | chr5.1:6059644-6059663 | MS.gene21219:intron | 35.0% | |
| GACAAGTAGAATAAGAGAGA+GGG | + | chr5.1:6058529-6058548 | None:intergenic | 35.0% | |
| GAGTATGAACCAAAAACAGT+TGG | + | chr5.1:6059926-6059945 | None:intergenic | 35.0% | |
| GGCAAACTTTCAAATAAACC+TGG | + | chr5.1:6059976-6059995 | None:intergenic | 35.0% | |
| TATTACCTCCTCAACATGTT+GGG | + | chr5.1:6058909-6058928 | None:intergenic | 35.0% | |
| TGTCCTTGTTGAAAAAGAAC+TGG | - | chr5.1:6060222-6060241 | MS.gene21219:intron | 35.0% | |
| TTATTACCTCCTCAACATGT+TGG | + | chr5.1:6058910-6058929 | None:intergenic | 35.0% | |
| ! | AAACAGATTCCTCGTCTTTT+GGG | - | chr5.1:6059762-6059781 | MS.gene21219:intron | 35.0% |
| ! | AATTGTTGCTTGAGCTGATT+TGG | - | chr5.1:6060001-6060020 | MS.gene21219:intron | 35.0% |
| ! | CTGAAACGTTTATCCTTTTG+AGG | + | chr5.1:6058824-6058843 | None:intergenic | 35.0% |
| ! | GATATTTTGCATGGCTTTTC+AGG | - | chr5.1:6060023-6060042 | MS.gene21219:intron | 35.0% |
| ! | TTGTGGTGATGATGAATCAT+TGG | - | chr5.1:6060305-6060324 | MS.gene21219:CDS | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr5.1:6059334-6059353 | MS.gene21219:intron | 35.0% |
| !! | TGTAATCTATTGCTGGTTTC+AGG | - | chr5.1:6060635-6060654 | MS.gene21219:intron | 35.0% |
| !!! | AGCACCGACATTTTGATATA+AGG | + | chr5.1:6059078-6059097 | None:intergenic | 35.0% |
| !!! | GATGGTATTGATTTTGCATC+CGG | - | chr5.1:6059535-6059554 | MS.gene21219:CDS | 35.0% |
| !!! | GCTGATTTGGATATTTTGCA+TGG | - | chr5.1:6060014-6060033 | MS.gene21219:intron | 35.0% |
| !!! | TTGCCAGTTCTTTTTCAACA+AGG | + | chr5.1:6060228-6060247 | None:intergenic | 35.0% |
| AACAGCTTCAGAGGCTAAAA+AGG | + | chr5.1:6059739-6059758 | None:intergenic | 40.0% | |
| ACAAACACGAAACACTGACA+CGG | - | chr5.1:6058963-6058982 | MS.gene21219:intron | 40.0% | |
| AGAAGCTATTACCGGAATCA+TGG | - | chr5.1:6058727-6058746 | MS.gene21219:intron | 40.0% | |
| AGCTGTTGGCAATGTTAGTA+TGG | - | chr5.1:6060151-6060170 | MS.gene21219:intron | 40.0% | |
| CACTCTATCAAACACGTGTT+CGG | + | chr5.1:6059048-6059067 | None:intergenic | 40.0% | |
| GAAATCCAGTCCTCTAATGT+CGG | + | chr5.1:6060392-6060411 | None:intergenic | 40.0% | |
| GAAGCTATTACCGGAATCAT+GGG | - | chr5.1:6058728-6058747 | MS.gene21219:intron | 40.0% | |
| GAGACTATTGAACTCCAGAT+TGG | - | chr5.1:6058782-6058801 | MS.gene21219:intron | 40.0% | |
| GATACTGTTGTATGCGACTT+AGG | - | chr5.1:6059229-6059248 | MS.gene21219:intron | 40.0% | |
| GCTTATCTGAGCTTATCTAC+TGG | + | chr5.1:6059452-6059471 | None:intergenic | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | - | chr5.1:6059635-6059654 | MS.gene21219:intron | 40.0% | |
| GTTGCACTCAAACTGTTTGT+TGG | - | chr5.1:6058936-6058955 | MS.gene21219:intron | 40.0% | |
| TCACCATATATGTTCTTCGG+TGG | - | chr5.1:6060543-6060562 | MS.gene21219:intron | 40.0% | |
| TGTGTCATCTGACTCATATC+AGG | + | chr5.1:6059207-6059226 | None:intergenic | 40.0% | |
| TTGTATCTGAAGAGCTCCAT+GGG | - | chr5.1:6060666-6060685 | MS.gene21219:intron | 40.0% | |
| ! | CAAACAGATTCCTCGTCTTT+TGG | - | chr5.1:6059761-6059780 | MS.gene21219:intron | 40.0% |
| ! | CTGTTTGATAACAGCTTCAG+AGG | + | chr5.1:6059748-6059767 | None:intergenic | 40.0% |
| ! | GCAGGCATGTGTTTTCTTTT+GGG | - | chr5.1:6059801-6059820 | MS.gene21219:intron | 40.0% |
| ! | GTGTTTTCTTTTGGGCGTTT+TGG | - | chr5.1:6059809-6059828 | MS.gene21219:intron | 40.0% |
| ! | TTTGGAATCACCCATGATTC+CGG | + | chr5.1:6058741-6058760 | None:intergenic | 40.0% |
| !! | CTCAAGAAAGTGTTGTGCAT+GGG | - | chr5.1:6060125-6060144 | MS.gene21219:intron | 40.0% |
| !! | TCTATTGCTGGTTTCAGGTT+AGG | - | chr5.1:6060640-6060659 | MS.gene21219:intron | 40.0% |
| !!! | TCTTTTTCAACAAGGACACG+AGG | + | chr5.1:6060220-6060239 | None:intergenic | 40.0% |
| AGCCTCAAGAGATTCTTGGT+GGG | + | chr5.1:6060069-6060088 | None:intergenic | 45.0% | |
| ATAGTCCGACATTAGAGGAC+TGG | - | chr5.1:6060384-6060403 | MS.gene21219:CDS | 45.0% | |
| ATCTTTGGTCTCGGAATGTG+AGG | + | chr5.1:6058863-6058882 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | - | chr5.1:6060070-6060089 | MS.gene21219:intron | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | + | chr5.1:6060073-6060092 | None:intergenic | 45.0% | |
| CGAACACGTGTTTGATAGAG+TGG | - | chr5.1:6059046-6059065 | MS.gene21219:CDS | 45.0% | |
| CTTCAGAGGCTAAAAAGGCA+TGG | + | chr5.1:6059734-6059753 | None:intergenic | 45.0% | |
| CTTGGTGGGAAACAAGTGTA+GGG | + | chr5.1:6060055-6060074 | None:intergenic | 45.0% | |
| CTTGTATCTGAAGAGCTCCA+TGG | - | chr5.1:6060665-6060684 | MS.gene21219:intron | 45.0% | |
| GACATCTTCACAAGGTTGTG+AGG | + | chr5.1:6060502-6060521 | None:intergenic | 45.0% | |
| GCACCACCGAAGAACATATA+TGG | + | chr5.1:6060549-6060568 | None:intergenic | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+CGG | - | chr5.1:6058719-6058738 | MS.gene21219:intron | 45.0% | |
| GGATAAACGTTTCAGCGGTT+CGG | - | chr5.1:6058829-6058848 | MS.gene21219:intron | 45.0% | |
| GGCTAAGGTTAACGAGACTA+AGG | - | chr5.1:6060085-6060104 | MS.gene21219:intron | 45.0% | |
| GGTTAACGAGACTAAGGCTA+TGG | - | chr5.1:6060091-6060110 | MS.gene21219:intron | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | + | chr5.1:6060070-6060089 | None:intergenic | 45.0% | |
| TCTTGGTGGGAAACAAGTGT+AGG | + | chr5.1:6060056-6060075 | None:intergenic | 45.0% | |
| TGCACAACACTTTCTTGAGC+TGG | + | chr5.1:6060124-6060143 | None:intergenic | 45.0% | |
| TTCCCACCAAGAATCTCTTG+AGG | - | chr5.1:6060064-6060083 | MS.gene21219:intron | 45.0% | |
| ! | GGCAGGCATGTGTTTTCTTT+TGG | - | chr5.1:6059800-6059819 | MS.gene21219:intron | 45.0% |
| ! | TGATTTTGCATCCGGAGCAT+GGG | - | chr5.1:6059543-6059562 | MS.gene21219:CDS | 45.0% |
| ! | TTGATTTTGCATCCGGAGCA+TGG | - | chr5.1:6059542-6059561 | MS.gene21219:CDS | 45.0% |
| !! | GACTCGGTAAGATTTTCCCA+TGG | + | chr5.1:6060685-6060704 | None:intergenic | 45.0% |
| !! | GCTCAAGAAAGTGTTGTGCA+TGG | - | chr5.1:6060124-6060143 | MS.gene21219:intron | 45.0% |
| GGTACTGCGACATCTTCACA+AGG | + | chr5.1:6060510-6060529 | None:intergenic | 50.0% | |
| TGATGCCCAACATGTTGAGG+AGG | - | chr5.1:6058901-6058920 | MS.gene21219:intron | 50.0% | |
| TTGTGCATGGGAGTAGCTGT+TGG | - | chr5.1:6060137-6060156 | MS.gene21219:intron | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | - | chr5.1:6059779-6059798 | MS.gene21219:intron | 50.0% | |
| ! | TGGTGATGCCCAACATGTTG+AGG | - | chr5.1:6058898-6058917 | MS.gene21219:intron | 50.0% |
| !! | ATTCCTCGTCTTTTGGGTCC+TGG | - | chr5.1:6059768-6059787 | MS.gene21219:intron | 50.0% |
| !! | TCAAAATGTCGGTGCTACCG+AGG | - | chr5.1:6059082-6059101 | MS.gene21219:CDS | 50.0% |
| AGACCAGGACCCAAAAGACG+AGG | + | chr5.1:6059774-6059793 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | + | chr5.1:6059789-6059808 | None:intergenic | 55.0% |
| GGTCCTGGTCTCAACAAGGC+AGG | - | chr5.1:6059783-6059802 | MS.gene21219:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6058507 | 6060710 | 6058507 | ID=MS.gene21219 |
| chr5.1 | mRNA | 6058507 | 6060710 | 6058507 | ID=MS.gene21219.t1;Parent=MS.gene21219 |
| chr5.1 | exon | 6060706 | 6060710 | 6060706 | ID=MS.gene21219.t1.exon1;Parent=MS.gene21219.t1 |
| chr5.1 | CDS | 6060706 | 6060710 | 6060706 | ID=cds.MS.gene21219.t1;Parent=MS.gene21219.t1 |
| chr5.1 | exon | 6060295 | 6060514 | 6060295 | ID=MS.gene21219.t1.exon2;Parent=MS.gene21219.t1 |
| chr5.1 | CDS | 6060295 | 6060514 | 6060295 | ID=cds.MS.gene21219.t1;Parent=MS.gene21219.t1 |
| chr5.1 | exon | 6059413 | 6059578 | 6059413 | ID=MS.gene21219.t1.exon3;Parent=MS.gene21219.t1 |
| chr5.1 | CDS | 6059413 | 6059578 | 6059413 | ID=cds.MS.gene21219.t1;Parent=MS.gene21219.t1 |
| chr5.1 | exon | 6058967 | 6059172 | 6058967 | ID=MS.gene21219.t1.exon4;Parent=MS.gene21219.t1 |
| chr5.1 | CDS | 6058967 | 6059172 | 6058967 | ID=cds.MS.gene21219.t1;Parent=MS.gene21219.t1 |
| chr5.1 | exon | 6058507 | 6058560 | 6058507 | ID=MS.gene21219.t1.exon5;Parent=MS.gene21219.t1 |
| chr5.1 | CDS | 6058507 | 6058560 | 6058507 | ID=cds.MS.gene21219.t1;Parent=MS.gene21219.t1 |
| Gene Sequence |
| Protein sequence |
