Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031955.t1 | XP_003600923.1 | 100 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 6.30E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031955.t1 | Q8VZB9 | 88.9 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 3.8e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031955.t1 | B7FGL9 | 100.0 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 4.5e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031955 | MS.gene82545 | PPI |
| MS.gene031955 | MS.gene034454 | PPI |
| MS.gene21219 | MS.gene031955 | PPI |
| MS.gene031955 | MS.gene84323 | PPI |
| MS.gene031955 | MS.gene09755 | PPI |
| MS.gene09753 | MS.gene031955 | PPI |
| MS.gene35416 | MS.gene031955 | PPI |
| MS.gene031955 | MS.gene008043 | PPI |
| MS.gene82038 | MS.gene031955 | PPI |
| MS.gene43038 | MS.gene031955 | PPI |
| MS.gene015407 | MS.gene031955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031955.t1 | MTR_3g070930 | 100.000 | 216 | 0 | 0 | 1 | 216 | 1 | 216 | 8.64e-159 | 437 |
| MS.gene031955.t1 | MTR_2g086500 | 98.611 | 216 | 3 | 0 | 1 | 216 | 1 | 216 | 1.87e-157 | 434 |
| MS.gene031955.t1 | MTR_5g012930 | 97.685 | 216 | 5 | 0 | 1 | 216 | 1 | 216 | 3.77e-156 | 431 |
| MS.gene031955.t1 | MTR_3g070930 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.81e-90 | 261 |
| MS.gene031955.t1 | MTR_1g098350 | 72.527 | 91 | 4 | 1 | 39 | 129 | 47 | 116 | 2.73e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031955.t1 | AT1G08360 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 1.71e-128 | 361 |
| MS.gene031955.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene031955.t1 | AT5G22440 | 89.862 | 217 | 21 | 1 | 1 | 216 | 1 | 217 | 1.72e-127 | 358 |
| MS.gene031955.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene031955.t1 | AT2G27530 | 87.963 | 216 | 26 | 0 | 1 | 216 | 1 | 216 | 2.43e-127 | 358 |
| MS.gene031955.t1 | AT2G42650 | 24.255 | 235 | 147 | 10 | 1 | 208 | 1 | 231 | 9.73e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 3.4:-70402029 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 3.4:+70401627 | MS.gene031955:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 3.4:+70399693 | MS.gene031955:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 3.4:-70401587 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 3.4:-70399697 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 3.4:-70399786 | None:intergenic |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 3.4:+70401510 | MS.gene031955:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 3.4:+70401501 | MS.gene031955:intron |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 3.4:+70402096 | MS.gene031955:CDS |
| ATATACCTCTTCGACGTGTT+GGG | 0.467119 | 3.4:-70399817 | None:intergenic |
| TATATACCTCTTCGACGTGT+TGG | 0.467153 | 3.4:-70399818 | None:intergenic |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 3.4:+70401496 | MS.gene031955:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 3.4:-70399771 | None:intergenic |
| CTTGTATCTGAAGAGTTCAA+TGG | 0.484688 | 3.4:+70402697 | MS.gene031955:CDS |
| TTGTATCTGAAGAGTTCAAT+GGG | 0.501469 | 3.4:+70402698 | MS.gene031955:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 3.4:+70402095 | MS.gene031955:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 3.4:+70402029 | MS.gene031955:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 3.4:+70399638 | MS.gene031955:CDS |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 3.4:-70401638 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 3.4:+70399630 | MS.gene031955:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 3.4:-70399780 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+CGG | 0.532764 | 3.4:+70399789 | MS.gene031955:CDS |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 3.4:-70402012 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 3.4:+70402071 | MS.gene031955:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 3.4:+70402083 | MS.gene031955:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 3.4:+70402084 | MS.gene031955:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 3.4:-70402011 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 3.4:+70402024 | MS.gene031955:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 3.4:+70401649 | MS.gene031955:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 3.4:+70401597 | MS.gene031955:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 3.4:-70399760 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 3.4:+70401645 | MS.gene031955:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 3.4:+70402050 | MS.gene031955:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 3.4:+70399608 | MS.gene031955:intron |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 3.4:-70401597 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 3.4:+70402110 | MS.gene031955:CDS |
| AGATGCCCAACACGTCGAAG+AGG | 0.614877 | 3.4:+70399812 | MS.gene031955:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 3.4:-70401639 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 3.4:+70402023 | MS.gene031955:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 3.4:-70401652 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 3.4:+70402044 | MS.gene031955:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 3.4:-70399779 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 3.4:-70402730 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 3.4:-70401637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAAAATACATTAAAT+TGG | - | chr3.4:70399875-70399894 | None:intergenic | 10.0% |
| !! | AAAAAAGAAAAAGAGAAAAA+AGG | - | chr3.4:70400619-70400638 | None:intergenic | 15.0% |
| !! | AGAATAAAAAAAATATGAGA+TGG | - | chr3.4:70401054-70401073 | None:intergenic | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | - | chr3.4:70400288-70400307 | None:intergenic | 15.0% |
| !! | ATATAATATTCTAATCTCAT+TGG | - | chr3.4:70400256-70400275 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | chr3.4:70401327-70401346 | MS.gene031955:intron | 15.0% |
| !! | TGATTTCGTATATTATTAAA+TGG | + | chr3.4:70401320-70401339 | MS.gene031955:intron | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | + | chr3.4:70400307-70400326 | MS.gene031955:intron | 15.0% |
| !!! | AATTTTTTAACACTGATTTA+CGG | + | chr3.4:70402554-70402573 | MS.gene031955:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | chr3.4:70401829-70401848 | None:intergenic | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | - | chr3.4:70400229-70400248 | None:intergenic | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | - | chr3.4:70401881-70401900 | None:intergenic | 20.0% |
| !! | AGTGTTAAAAAATTTCAACT+AGG | - | chr3.4:70402548-70402567 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | chr3.4:70401942-70401961 | MS.gene031955:intron | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | chr3.4:70400467-70400486 | None:intergenic | 20.0% |
| !! | GTGTTAAAAAATTTCAACTA+GGG | - | chr3.4:70402547-70402566 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | - | chr3.4:70401905-70401924 | None:intergenic | 20.0% |
| !!! | ATTTTTTAACACTGATTTAC+GGG | + | chr3.4:70402555-70402574 | MS.gene031955:intron | 20.0% |
| !!! | CTAAGTTTTTACTGTTTTAA+GGG | + | chr3.4:70400118-70400137 | MS.gene031955:intron | 20.0% |
| !!! | TCTAAGTTTTTACTGTTTTA+AGG | + | chr3.4:70400117-70400136 | MS.gene031955:intron | 20.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | chr3.4:70402438-70402457 | MS.gene031955:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | chr3.4:70402439-70402458 | MS.gene031955:intron | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | + | chr3.4:70400310-70400329 | MS.gene031955:intron | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | chr3.4:70400913-70400932 | MS.gene031955:intron | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | chr3.4:70399847-70399866 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | - | chr3.4:70401469-70401488 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | chr3.4:70402402-70402421 | None:intergenic | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | chr3.4:70400365-70400384 | MS.gene031955:intron | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | chr3.4:70400720-70400739 | None:intergenic | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | chr3.4:70400460-70400479 | None:intergenic | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | - | chr3.4:70401165-70401184 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | chr3.4:70400733-70400752 | None:intergenic | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+CGG | - | chr3.4:70402599-70402618 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | chr3.4:70401552-70401571 | MS.gene031955:CDS | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | chr3.4:70400461-70400480 | None:intergenic | 25.0% |
| ! | TTGTGCAACAATGAAATAAA+AGG | - | chr3.4:70402222-70402241 | None:intergenic | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | - | chr3.4:70402273-70402292 | None:intergenic | 25.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | chr3.4:70399505-70399524 | None:intergenic | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | chr3.4:70401983-70402002 | MS.gene031955:intron | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | chr3.4:70401545-70401564 | None:intergenic | 25.0% |
| !! | GGAAATATGAATCGATTTAT+TGG | - | chr3.4:70399484-70399503 | None:intergenic | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | chr3.4:70401690-70401709 | MS.gene031955:intron | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | chr3.4:70401982-70402001 | MS.gene031955:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | chr3.4:70400937-70400956 | MS.gene031955:intron | 25.0% |
| !!! | AGTTTTTTTCCGTACTTAAA+GGG | + | chr3.4:70400779-70400798 | MS.gene031955:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | chr3.4:70401934-70401953 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | chr3.4:70400511-70400530 | None:intergenic | 25.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | chr3.4:70401011-70401030 | None:intergenic | 30.0% | |
| AAAAACCCAATTCAACAGAA+GGG | - | chr3.4:70400650-70400669 | None:intergenic | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | chr3.4:70401712-70401731 | None:intergenic | 30.0% | |
| AAACAAACACCCTTTAAGTA+CGG | - | chr3.4:70400791-70400810 | None:intergenic | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | - | chr3.4:70402388-70402407 | None:intergenic | 30.0% | |
| AAATTGCATCCCTTAACAAA+AGG | - | chr3.4:70400079-70400098 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | - | chr3.4:70402416-70402435 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | - | chr3.4:70401160-70401179 | None:intergenic | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | - | chr3.4:70401040-70401059 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | chr3.4:70400721-70400740 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | chr3.4:70400193-70400212 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | chr3.4:70401086-70401105 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | chr3.4:70401252-70401271 | MS.gene031955:intron | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | chr3.4:70401093-70401112 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | - | chr3.4:70402411-70402430 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | chr3.4:70400193-70400212 | MS.gene031955:intron | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | - | chr3.4:70401253-70401272 | None:intergenic | 30.0% | |
| TTACGCTACATAGATATATC+TGG | + | chr3.4:70400030-70400049 | MS.gene031955:intron | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | chr3.4:70400192-70400211 | None:intergenic | 30.0% | |
| TTGTATCTGAAGAGTTCAAT+GGG | + | chr3.4:70402698-70402717 | MS.gene031955:CDS | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | + | chr3.4:70400845-70400864 | MS.gene031955:intron | 30.0% | |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | chr3.4:70399670-70399689 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | chr3.4:70400941-70400960 | MS.gene031955:intron | 30.0% |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | chr3.4:70400926-70400945 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | chr3.4:70399734-70399753 | None:intergenic | 30.0% |
| ! | TTCCACTATCCTTTTGTTAA+GGG | + | chr3.4:70400067-70400086 | MS.gene031955:intron | 30.0% |
| !! | AATGAATTGCCTTGTTTGAA+AGG | + | chr3.4:70401893-70401912 | MS.gene031955:intron | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | chr3.4:70399583-70399602 | MS.gene031955:intron | 30.0% |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | chr3.4:70402607-70402626 | MS.gene031955:intron | 30.0% |
| !!! | ACTTAAAGGGTGTTTGTTTT+TGG | + | chr3.4:70400792-70400811 | MS.gene031955:intron | 30.0% |
| !!! | GAGTTTTTTTCCGTACTTAA+AGG | + | chr3.4:70400778-70400797 | MS.gene031955:intron | 30.0% |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | chr3.4:70400516-70400535 | None:intergenic | 30.0% |
| AACCAAACCCTTAGATGAAA+AGG | - | chr3.4:70400571-70400590 | None:intergenic | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | - | chr3.4:70402452-70402471 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | chr3.4:70401483-70401502 | MS.gene031955:intron | 35.0% | |
| ACCAAACCCTTAGATGAAAA+GGG | - | chr3.4:70400570-70400589 | None:intergenic | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | chr3.4:70399789-70399808 | None:intergenic | 35.0% | |
| ATCCCTTAACAAAAGGATAG+TGG | - | chr3.4:70400072-70400091 | None:intergenic | 35.0% | |
| ATGACTAGGCAAAAACTAGA+AGG | - | chr3.4:70401455-70401474 | None:intergenic | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | chr3.4:70402301-70402320 | MS.gene031955:intron | 35.0% | |
| CAAAAAGATAAGCGTTTCAG+TGG | + | chr3.4:70399735-70399754 | MS.gene031955:CDS | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | chr3.4:70402627-70402646 | None:intergenic | 35.0% | |
| CTTGTATCTGAAGAGTTCAA+TGG | + | chr3.4:70402697-70402716 | MS.gene031955:CDS | 35.0% | |
| GAAAAACCCAATTCAACAGA+AGG | - | chr3.4:70400651-70400670 | None:intergenic | 35.0% | |
| GACAAATAAGTTACGACAGT+AGG | + | chr3.4:70401382-70401401 | MS.gene031955:intron | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | chr3.4:70399693-70399712 | MS.gene031955:CDS | 35.0% | |
| GGTGAAATTTCAGCTAAAGA+AGG | + | chr3.4:70402071-70402090 | MS.gene031955:CDS | 35.0% | |
| GTTTGTGATTTAGAGGAAAG+TGG | - | chr3.4:70400489-70400508 | None:intergenic | 35.0% | |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | chr3.4:70402181-70402200 | MS.gene031955:CDS | 35.0% | |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | chr3.4:70399608-70399627 | MS.gene031955:intron | 35.0% | |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | chr3.4:70401628-70401647 | MS.gene031955:CDS | 35.0% |
| ! | AAGATGAAGCTTTGTATGCT+CGG | + | chr3.4:70399789-70399808 | MS.gene031955:CDS | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | chr3.4:70399735-70399754 | None:intergenic | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | + | chr3.4:70400066-70400085 | MS.gene031955:intron | 35.0% |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | chr3.4:70401510-70401529 | MS.gene031955:CDS | 35.0% |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | chr3.4:70400940-70400959 | MS.gene031955:intron | 35.0% |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | chr3.4:70399700-70399719 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | chr3.4:70401627-70401646 | MS.gene031955:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | chr3.4:70401590-70401609 | None:intergenic | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | chr3.4:70400956-70400975 | MS.gene031955:intron | 35.0% |
| !! | CATAACCTACTGTTGATTTC+AGG | + | chr3.4:70402667-70402686 | MS.gene031955:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | chr3.4:70401273-70401292 | MS.gene031955:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | chr3.4:70400962-70400981 | MS.gene031955:intron | 35.0% |
| !! | TAGCACCACCGATTTATATT+AGG | - | chr3.4:70400318-70400337 | None:intergenic | 35.0% |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | chr3.4:70400496-70400515 | None:intergenic | 35.0% |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | chr3.4:70400572-70400591 | MS.gene031955:intron | 35.0% |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | chr3.4:70402179-70402198 | None:intergenic | 35.0% |
| AAAGCTTCATCTTAGGACGA+GGG | - | chr3.4:70399782-70399801 | None:intergenic | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | chr3.4:70400642-70400661 | MS.gene031955:intron | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | chr3.4:70401496-70401515 | MS.gene031955:intron | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | chr3.4:70400534-70400553 | MS.gene031955:intron | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | chr3.4:70399638-70399657 | MS.gene031955:CDS | 40.0% | |
| ATATACCTCTTCGACGTGTT+GGG | - | chr3.4:70399820-70399839 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | chr3.4:70400996-70401015 | None:intergenic | 40.0% | |
| CACTGATCCAATTTCTGATG+GGG | + | chr3.4:70400815-70400834 | MS.gene031955:intron | 40.0% | |
| GACCTCAAATTAGGGATAAG+TGG | + | chr3.4:70402447-70402466 | MS.gene031955:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | chr3.4:70401671-70401690 | MS.gene031955:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | chr3.4:70400641-70400660 | MS.gene031955:intron | 40.0% | |
| TATATACCTCTTCGACGTGT+TGG | - | chr3.4:70399821-70399840 | None:intergenic | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | chr3.4:70401497-70401516 | None:intergenic | 40.0% | |
| TCAAGATCTGAGCTTCTTGT+TGG | - | chr3.4:70400534-70400553 | None:intergenic | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | chr3.4:70402024-70402043 | MS.gene031955:CDS | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | chr3.4:70400825-70400844 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | chr3.4:70401287-70401306 | MS.gene031955:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | chr3.4:70400814-70400833 | MS.gene031955:intron | 40.0% |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | - | chr3.4:70400064-70400083 | None:intergenic | 40.0% |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | chr3.4:70402672-70402691 | MS.gene031955:intron | 40.0% |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | chr3.4:70402187-70402206 | None:intergenic | 40.0% |
| AAGGAAAATCAGATGGGAGC+AGG | - | chr3.4:70400714-70400733 | None:intergenic | 45.0% | |
| ACCCTTAGATGAAAAGGGCT+TGG | - | chr3.4:70400565-70400584 | None:intergenic | 45.0% | |
| AGGAAAATCAGATGGGAGCA+GGG | - | chr3.4:70400713-70400732 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | chr3.4:70399763-70399782 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | chr3.4:70399774-70399793 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | chr3.4:70399783-70399802 | None:intergenic | 45.0% | |
| CATGCTAGCATTTCACCGAA+GGG | - | chr3.4:70402319-70402338 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | chr3.4:70402029-70402048 | MS.gene031955:CDS | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | chr3.4:70401597-70401616 | MS.gene031955:CDS | 45.0% | |
| CCGAACCTGAAATCAACAGT+AGG | - | chr3.4:70402675-70402694 | None:intergenic | 45.0% | |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | chr3.4:70401600-70401619 | None:intergenic | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | chr3.4:70402032-70402051 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | chr3.4:70402023-70402042 | MS.gene031955:CDS | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | chr3.4:70400562-70400581 | None:intergenic | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | chr3.4:70402014-70402033 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | + | chr3.4:70400419-70400438 | MS.gene031955:intron | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | chr3.4:70402044-70402063 | MS.gene031955:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | chr3.4:70402050-70402069 | MS.gene031955:CDS | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | chr3.4:70402320-70402339 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | chr3.4:70402015-70402034 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | - | chr3.4:70402368-70402387 | None:intergenic | 45.0% |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | chr3.4:70400561-70400580 | MS.gene031955:intron | 45.0% |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | chr3.4:70400566-70400585 | MS.gene031955:intron | 45.0% |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | chr3.4:70402084-70402103 | MS.gene031955:CDS | 45.0% |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | chr3.4:70400813-70400832 | MS.gene031955:intron | 45.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | chr3.4:70402110-70402129 | MS.gene031955:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | chr3.4:70401665-70401684 | MS.gene031955:intron | 50.0% | |
| GCAGGCAGAGAAGATAGGTT+TGG | + | chr3.4:70401501-70401520 | MS.gene031955:intron | 50.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | chr3.4:70399630-70399649 | MS.gene031955:CDS | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | chr3.4:70401642-70401661 | None:intergenic | 50.0% | |
| TTTGCTGAGCTGAGAGAGCA+GGG | + | chr3.4:70400398-70400417 | MS.gene031955:intron | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | chr3.4:70401645-70401664 | MS.gene031955:CDS | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | chr3.4:70400560-70400579 | MS.gene031955:intron | 50.0% |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | + | chr3.4:70400397-70400416 | MS.gene031955:intron | 50.0% |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | chr3.4:70402083-70402102 | MS.gene031955:CDS | 50.0% |
| AGAATGAGAGAGGCCTCGAG+TGG | + | chr3.4:70400429-70400448 | MS.gene031955:intron | 55.0% | |
| AGACCAGGACCCAAAAGACG+GGG | - | chr3.4:70401640-70401659 | None:intergenic | 55.0% | |
| AGATGCCCAACACGTCGAAG+AGG | + | chr3.4:70399812-70399831 | MS.gene031955:CDS | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | chr3.4:70400982-70401001 | MS.gene031955:intron | 55.0% | |
| CTCTGCATGGGAGTAGCTGT+GGG | + | chr3.4:70402096-70402115 | MS.gene031955:CDS | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | chr3.4:70400430-70400449 | MS.gene031955:intron | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | chr3.4:70401641-70401660 | None:intergenic | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | chr3.4:70400445-70400464 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | chr3.4:70401655-70401674 | None:intergenic | 55.0% |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | chr3.4:70401634-70401653 | MS.gene031955:CDS | 55.0% |
| GCTCTGCATGGGAGTAGCTG+TGG | + | chr3.4:70402095-70402114 | MS.gene031955:CDS | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | chr3.4:70401649-70401668 | MS.gene031955:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70399467 | 70402742 | 70399467 | ID=MS.gene031955 |
| chr3.4 | mRNA | 70399467 | 70402742 | 70399467 | ID=MS.gene031955.t1;Parent=MS.gene031955 |
| chr3.4 | exon | 70399467 | 70399471 | 70399467 | ID=MS.gene031955.t1.exon1;Parent=MS.gene031955.t1 |
| chr3.4 | CDS | 70399467 | 70399471 | 70399467 | ID=cds.MS.gene031955.t1;Parent=MS.gene031955.t1 |
| chr3.4 | exon | 70399614 | 70399833 | 70399614 | ID=MS.gene031955.t1.exon2;Parent=MS.gene031955.t1 |
| chr3.4 | CDS | 70399614 | 70399833 | 70399614 | ID=cds.MS.gene031955.t1;Parent=MS.gene031955.t1 |
| chr3.4 | exon | 70401505 | 70401670 | 70401505 | ID=MS.gene031955.t1.exon3;Parent=MS.gene031955.t1 |
| chr3.4 | CDS | 70401505 | 70401670 | 70401505 | ID=cds.MS.gene031955.t1;Parent=MS.gene031955.t1 |
| chr3.4 | exon | 70402004 | 70402209 | 70402004 | ID=MS.gene031955.t1.exon4;Parent=MS.gene031955.t1 |
| chr3.4 | CDS | 70402004 | 70402209 | 70402004 | ID=cds.MS.gene031955.t1;Parent=MS.gene031955.t1 |
| chr3.4 | exon | 70402689 | 70402742 | 70402689 | ID=MS.gene031955.t1.exon5;Parent=MS.gene031955.t1 |
| chr3.4 | CDS | 70402689 | 70402742 | 70402689 | ID=cds.MS.gene031955.t1;Parent=MS.gene031955.t1 |
| Gene Sequence |
| Protein sequence |
