Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008435.t1 | XP_003600546.1 | 96.1 | 433 | 17 | 0 | 1 | 433 | 1 | 433 | 9.90E-251 | 875.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008435.t1 | P20664 | 44.0 | 423 | 203 | 11 | 14 | 423 | 13 | 414 | 7.2e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008435.t1 | G7IV46 | 96.1 | 433 | 17 | 0 | 1 | 433 | 1 | 433 | 7.1e-251 | 875.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008435.t1 | MTR_3g062490 | 96.074 | 433 | 17 | 0 | 1 | 433 | 1 | 433 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008435.t1 | AT5G41880 | 66.898 | 432 | 142 | 1 | 3 | 433 | 20 | 451 | 0.0 | 624 |
Find 93 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGCAACTTTAAATTAT+AGG | 0.152070 | 3.3:-56702646 | None:intergenic |
| CTGATGTTTGCTTGGATTGC+TGG | 0.175005 | 3.3:+56697956 | MS.gene008435:CDS |
| GTAATATGGTTTGAGAAAAT+TGG | 0.179480 | 3.3:-56697069 | None:intergenic |
| TGCTGCTCTTCATCCTTTCT+TGG | 0.219140 | 3.3:+56699552 | MS.gene008435:CDS |
| CTTATGCTGATATATTTAAA+TGG | 0.242848 | 3.3:+56697233 | MS.gene008435:CDS |
| TCAAACTCGTCGCACCGATT+TGG | 0.308608 | 3.3:-56701311 | None:intergenic |
| CTTCTGAACTTAGGGGAAAA+TGG | 0.309145 | 3.3:+56699858 | MS.gene008435:CDS |
| ATATTTAAATGGATGTCTTA+TGG | 0.313114 | 3.3:+56697244 | MS.gene008435:CDS |
| GGTCCAATGTCAATCTTTAA+AGG | 0.318846 | 3.3:-56697492 | None:intergenic |
| GGATGTAACTAACCGTAATA+TGG | 0.322356 | 3.3:-56697083 | None:intergenic |
| CAAACTCGTCGCACCGATTT+GGG | 0.324581 | 3.3:-56701310 | None:intergenic |
| CAGCTGTTGCTTCTGAACTT+AGG | 0.327727 | 3.3:+56699849 | MS.gene008435:intron |
| CAAGGGTGCTGATGTTTGCT+TGG | 0.351983 | 3.3:+56697948 | MS.gene008435:CDS |
| TGCATAAATTTACCTGGAAA+AGG | 0.360793 | 3.3:-56701352 | None:intergenic |
| AGCTGTTGCTTCTGAACTTA+GGG | 0.372658 | 3.3:+56699850 | MS.gene008435:intron |
| CAAGGGCATTGTTGTAAGAT+TGG | 0.376905 | 3.3:-56697440 | None:intergenic |
| AAAATCAACTCCCTCTCAAC+TGG | 0.382678 | 3.3:-56697778 | None:intergenic |
| ATGTGGTTCAGCCTGCAAAA+AGG | 0.392955 | 3.3:+56697719 | MS.gene008435:intron |
| TGCAAGCAGTTGTTGCAATC+TGG | 0.396731 | 3.3:+56699941 | MS.gene008435:CDS |
| TCATAAGAAGGTTTCTTTGA+TGG | 0.398817 | 3.3:+56699528 | MS.gene008435:CDS |
| TACTTACCCCAGGCTAGATA+TGG | 0.399800 | 3.3:+56700758 | MS.gene008435:CDS |
| GGAAGAATCAATCACTTTGA+TGG | 0.406439 | 3.3:-56697995 | None:intergenic |
| GGGGAAAATGGCAAGACAAT+AGG | 0.421032 | 3.3:+56699870 | MS.gene008435:CDS |
| TTCATTGTTGGGTGTGTGAT+GGG | 0.424472 | 3.3:+56699076 | MS.gene008435:CDS |
| CATAAGAAGGTTTCTTTGAT+GGG | 0.427571 | 3.3:+56699529 | MS.gene008435:CDS |
| TCGCACCGATTTGGGTCAAT+AGG | 0.440085 | 3.3:-56701302 | None:intergenic |
| CTAGATGAGCTTAATAATGA+AGG | 0.443170 | 3.3:+56701650 | MS.gene008435:CDS |
| GGCTGTGATCAGTCCTACTT+TGG | 0.450382 | 3.3:+56697369 | MS.gene008435:CDS |
| GTCCAATGTCAATCTTTAAA+GGG | 0.452622 | 3.3:-56697491 | None:intergenic |
| GACGAAGAGGTGTTCATTGT+TGG | 0.457076 | 3.3:+56699064 | MS.gene008435:CDS |
| GCATAAATTTACCTGGAAAA+GGG | 0.457809 | 3.3:-56701351 | None:intergenic |
| AAATGTAATGTACATTCATC+AGG | 0.458206 | 3.3:-56699752 | None:intergenic |
| GGCTTGAGAGCTGATGTTAA+TGG | 0.464362 | 3.3:+56701671 | MS.gene008435:CDS |
| CACATACTCTGGGTCTATAG+TGG | 0.465375 | 3.3:+56699042 | MS.gene008435:CDS |
| ACTACTGTTTCAGATGACTT+TGG | 0.467950 | 3.3:+56699012 | MS.gene008435:intron |
| AAATTCCCTTCTTCCAAAGT+AGG | 0.470331 | 3.3:-56697382 | None:intergenic |
| GTTGCAATCTGGAAAACATA+AGG | 0.478385 | 3.3:+56699952 | MS.gene008435:CDS |
| GTTCATTGTTGGGTGTGTGA+TGG | 0.479437 | 3.3:+56699075 | MS.gene008435:CDS |
| ATCAATCACTTTGATGGCTA+TGG | 0.483305 | 3.3:-56697989 | None:intergenic |
| ATCAGTCCTACTTTGGAAGA+AGG | 0.484427 | 3.3:+56697376 | MS.gene008435:CDS |
| ACAGACCTCCATATCTAGCC+TGG | 0.488928 | 3.3:-56700766 | None:intergenic |
| TGCCCTTTAAAGATTGACAT+TGG | 0.495107 | 3.3:+56697489 | MS.gene008435:CDS |
| ACGAAGAGGTGTTCATTGTT+GGG | 0.495453 | 3.3:+56699065 | MS.gene008435:CDS |
| GAATGGAGTGGAACTTCCCT+TGG | 0.497327 | 3.3:+56702290 | MS.gene008435:intron |
| CTCAAGACTTACGCCAAGAA+AGG | 0.498182 | 3.3:-56699565 | None:intergenic |
| ATTGTAGATGGGAAACATCC+TGG | 0.501473 | 3.3:+56697348 | MS.gene008435:intron |
| CATTTAAATATATCAGCATA+AGG | 0.502545 | 3.3:-56697232 | None:intergenic |
| TTGGCTTCAAGCACATACTC+TGG | 0.507696 | 3.3:+56699031 | MS.gene008435:CDS |
| ATTATTATCACTTTGTGCAT+AGG | 0.508200 | 3.3:-56697746 | None:intergenic |
| AAAACTCAGAATCTTGTTGT+GGG | 0.510019 | 3.3:-56697043 | None:intergenic |
| ATTCATCAGGAATCATGCTT+AGG | 0.517226 | 3.3:-56699739 | None:intergenic |
| TGTGTGATGGGAAGGCTAGA+AGG | 0.517538 | 3.3:+56699088 | MS.gene008435:CDS |
| GTGTTCCTATTGACCCAAAT+CGG | 0.520731 | 3.3:+56701297 | MS.gene008435:CDS |
| TGCATTGCACTACCAACCTA+TGG | 0.526014 | 3.3:-56702679 | None:intergenic |
| AAAAGGGTGGGTACTGTGGT+AGG | 0.526266 | 3.3:-56701335 | None:intergenic |
| TAAAACTCAGAATCTTGTTG+TGG | 0.532312 | 3.3:-56697044 | None:intergenic |
| ACGCAAATTACTACCTCTCA+AGG | 0.539006 | 3.3:-56698016 | None:intergenic |
| AGATATTAATGTTGTGCGGT+GGG | 0.549249 | 3.3:+56699913 | MS.gene008435:CDS |
| CAATGAAAATAGTCATAAGA+AGG | 0.549770 | 3.3:+56699516 | MS.gene008435:CDS |
| TTGATGGCTATGGTCATCAA+TGG | 0.552196 | 3.3:-56697979 | None:intergenic |
| CAGACCTCCATATCTAGCCT+GGG | 0.557133 | 3.3:-56700765 | None:intergenic |
| GTTACATCGACTGTGTAGAC+AGG | 0.559275 | 3.3:-56697513 | None:intergenic |
| AAATGGATGTCTTATGGCAA+CGG | 0.560209 | 3.3:+56697250 | MS.gene008435:CDS |
| TTGTTGGGTGTGTGATGGGA+AGG | 0.560818 | 3.3:+56699080 | MS.gene008435:CDS |
| TACTGCAGGAGGAGATAGAA+AGG | 0.563804 | 3.3:+56702622 | MS.gene008435:intron |
| AAGATATTAATGTTGTGCGG+TGG | 0.564243 | 3.3:+56699912 | MS.gene008435:CDS |
| TGGCTTCAAGCACATACTCT+GGG | 0.565334 | 3.3:+56699032 | MS.gene008435:CDS |
| AAAGCGTAACTGAGTTTCCA+AGG | 0.568628 | 3.3:-56702307 | None:intergenic |
| TAAATTTACCTGGAAAAGGG+TGG | 0.571443 | 3.3:-56701348 | None:intergenic |
| GTGATTGATTCTTCCTTGAG+AGG | 0.573001 | 3.3:+56698003 | MS.gene008435:CDS |
| AAAGTCATCGTTCAAAGTGA+AGG | 0.573086 | 3.3:-56697406 | None:intergenic |
| AAAATAGTCCTTGAGAACAT+TGG | 0.578336 | 3.3:-56699657 | None:intergenic |
| ATCATACACCAATGTTCTCA+AGG | 0.579918 | 3.3:+56699649 | MS.gene008435:CDS |
| TCAGTCCTACTTTGGAAGAA+GGG | 0.583160 | 3.3:+56697377 | MS.gene008435:CDS |
| TGTTCTGCTATACTTACCCC+AGG | 0.586755 | 3.3:+56700748 | MS.gene008435:CDS |
| CAGCAGTCAAAGAACTCCAT+AGG | 0.587531 | 3.3:+56702663 | MS.gene008435:CDS |
| AAGTAGGACTGATCACAGCC+AGG | 0.597622 | 3.3:-56697366 | None:intergenic |
| CTGGAAAAGGGTGGGTACTG+TGG | 0.601068 | 3.3:-56701339 | None:intergenic |
| TGTCTTCACTCCAGTTGAGA+GGG | 0.602905 | 3.3:+56697768 | MS.gene008435:CDS |
| ATGTCTTCACTCCAGTTGAG+AGG | 0.606406 | 3.3:+56697767 | MS.gene008435:CDS |
| AGTCAAAGAACTCCATAGGT+TGG | 0.606427 | 3.3:+56702667 | MS.gene008435:CDS |
| TTACCCCAGGCTAGATATGG+AGG | 0.628406 | 3.3:+56700761 | MS.gene008435:CDS |
| AAATTTACCTGGAAAAGGGT+GGG | 0.629339 | 3.3:-56701347 | None:intergenic |
| TCAAAACTTACTCGCTACTG+AGG | 0.630959 | 3.3:+56699700 | MS.gene008435:CDS |
| GCTGTTGCTTCTGAACTTAG+GGG | 0.640099 | 3.3:+56699851 | MS.gene008435:intron |
| GATGTCAGATACTGCTGCAA+GGG | 0.646848 | 3.3:+56697931 | MS.gene008435:CDS |
| AAGCGTAACTGAGTTTCCAA+GGG | 0.661590 | 3.3:-56702306 | None:intergenic |
| AAGAAGATATTAATGTTGTG+CGG | 0.661821 | 3.3:+56699909 | MS.gene008435:CDS |
| TGGGTCTATAGTGGACGAAG+AGG | 0.693990 | 3.3:+56699051 | MS.gene008435:CDS |
| TGATGTCAGATACTGCTGCA+AGG | 0.695095 | 3.3:+56697930 | MS.gene008435:CDS |
| AGACCTCCATATCTAGCCTG+GGG | 0.714360 | 3.3:-56700764 | None:intergenic |
| TGTTTGGTAGCAGAATGGAG+TGG | 0.725763 | 3.3:+56702278 | MS.gene008435:intron |
| TTGAGAGCTGATGTTAATGG+TGG | 0.727071 | 3.3:+56701674 | MS.gene008435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAATAAATATGATTA+TGG | - | chr3.3:56700498-56700517 | None:intergenic | 10.0% |
| !! | AAAGAGAAAAAAATAAAAGA+GGG | - | chr3.3:56697878-56697897 | None:intergenic | 15.0% |
| !! | AATAAAAATTGCAAATGTTT+AGG | - | chr3.3:56701735-56701754 | None:intergenic | 15.0% |
| !! | TGATATATAGATACATATTT+GGG | - | chr3.3:56700879-56700898 | None:intergenic | 15.0% |
| !! | TTGATATATAGATACATATT+TGG | - | chr3.3:56700880-56700899 | None:intergenic | 15.0% |
| !!! | AAGGTATAAAATATTCTTTT+TGG | + | chr3.3:56699971-56699990 | MS.gene008435:intron | 15.0% |
| !!! | AATTATTATAGATGGTTTTA+GGG | - | chr3.3:56698851-56698870 | None:intergenic | 15.0% |
| !!! | AGACTTAATTTTTAAAAAAC+AGG | + | chr3.3:56698097-56698116 | MS.gene008435:intron | 15.0% |
| !!! | AGGTATAAAATATTCTTTTT+GGG | + | chr3.3:56699972-56699991 | MS.gene008435:intron | 15.0% |
| !!! | TAATTATTATAGATGGTTTT+AGG | - | chr3.3:56698852-56698871 | None:intergenic | 15.0% |
| !!! | TATTATTTATATGCTTGTTA+AGG | - | chr3.3:56700227-56700246 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTATTTAAGATG+AGG | + | chr3.3:56700402-56700421 | MS.gene008435:intron | 15.0% |
| !!! | TTTGAAACATATTTAAGAAT+GGG | + | chr3.3:56701865-56701884 | MS.gene008435:intron | 15.0% |
| !!! | TTTTATTTTTTTCTCTTTCA+TGG | + | chr3.3:56697880-56697899 | MS.gene008435:intron | 15.0% |
| !!! | TTTTGAAACATATTTAAGAA+TGG | + | chr3.3:56701864-56701883 | MS.gene008435:intron | 15.0% |
| !! | AACAAACATTAATACAAGTA+TGG | - | chr3.3:56699475-56699494 | None:intergenic | 20.0% |
| !! | AACCACATAAAAATTGATTA+GGG | - | chr3.3:56697707-56697726 | None:intergenic | 20.0% |
| !! | AACTTATGAATATACAACTT+TGG | - | chr3.3:56700188-56700207 | None:intergenic | 20.0% |
| !! | ACAAACATTAATACAAGTAT+GGG | - | chr3.3:56699474-56699493 | None:intergenic | 20.0% |
| !! | AGATTAATTTCCATATTACT+TGG | + | chr3.3:56700366-56700385 | MS.gene008435:intron | 20.0% |
| !! | ATATATAGATACATATTTGG+GGG | - | chr3.3:56700877-56700896 | None:intergenic | 20.0% |
| !! | ATATTTAAATGGATGTCTTA+TGG | + | chr3.3:56697244-56697263 | MS.gene008435:CDS | 20.0% |
| !! | ATGATATTAACCAAGTAATA+TGG | - | chr3.3:56700379-56700398 | None:intergenic | 20.0% |
| !! | CACAATAATACTGAATTATA+GGG | - | chr3.3:56697551-56697570 | None:intergenic | 20.0% |
| !! | CATTTAAATATATCAGCATA+AGG | - | chr3.3:56697235-56697254 | None:intergenic | 20.0% |
| !! | CGTAAATGAAAATAACTTAA+TGG | - | chr3.3:56700840-56700859 | None:intergenic | 20.0% |
| !! | CTCAATCTAATTATTATAGA+TGG | - | chr3.3:56698859-56698878 | None:intergenic | 20.0% |
| !! | CTTATGCTGATATATTTAAA+TGG | + | chr3.3:56697233-56697252 | MS.gene008435:CDS | 20.0% |
| !! | CTTTCATTTATTTAAAAGAG+AGG | - | chr3.3:56698280-56698299 | None:intergenic | 20.0% |
| !! | GAAAGAGAAAAAAATAAAAG+AGG | - | chr3.3:56697879-56697898 | None:intergenic | 20.0% |
| !! | GATATATAGATACATATTTG+GGG | - | chr3.3:56700878-56700897 | None:intergenic | 20.0% |
| !! | GATTCCTATTTGAATATTTA+TGG | + | chr3.3:56698465-56698484 | MS.gene008435:intron | 20.0% |
| !! | TATAATGCTTAGTTTATAAG+TGG | + | chr3.3:56702126-56702145 | MS.gene008435:intron | 20.0% |
| !! | TATATTATCTTTACTATTGC+AGG | + | chr3.3:56699180-56699199 | MS.gene008435:intron | 20.0% |
| !! | TATTAAATCTATCTTCTCTT+TGG | + | chr3.3:56701168-56701187 | MS.gene008435:intron | 20.0% |
| !! | TTAAACGCAAAAATTTAGAT+TGG | - | chr3.3:56700937-56700956 | None:intergenic | 20.0% |
| !! | TTGAAACATATTTAAGAATG+GGG | + | chr3.3:56701866-56701885 | MS.gene008435:intron | 20.0% |
| !!! | AAACTAGTCAAAAGTATTAT+TGG | - | chr3.3:56700906-56700925 | None:intergenic | 20.0% |
| !!! | AATTTTCTCAAACCATATTA+CGG | + | chr3.3:56697071-56697090 | MS.gene008435:CDS | 20.0% |
| !!! | AGTCTTGTATTTCTATAAAT+AGG | + | chr3.3:56700425-56700444 | MS.gene008435:intron | 20.0% |
| !!! | CTTGATAATGAATTTTGTTT+TGG | + | chr3.3:56698988-56699007 | MS.gene008435:intron | 20.0% |
| !!! | GTCTTGTATTTCTATAAATA+GGG | + | chr3.3:56700426-56700445 | MS.gene008435:intron | 20.0% |
| ! | AAAATTGATTAGGGGAAAAA+TGG | - | chr3.3:56697698-56697717 | None:intergenic | 25.0% |
| ! | AAATGTAATGTACATTCATC+AGG | - | chr3.3:56699755-56699774 | None:intergenic | 25.0% |
| ! | AACATCTCAATTTAACAATC+TGG | + | chr3.3:56700534-56700553 | MS.gene008435:intron | 25.0% |
| ! | AAGAAGATATTAATGTTGTG+CGG | + | chr3.3:56699909-56699928 | MS.gene008435:CDS | 25.0% |
| ! | AATAAGCATTAGAAGATATG+AGG | - | chr3.3:56702226-56702245 | None:intergenic | 25.0% |
| ! | AATGAAAAGGATTTGCAAAA+TGG | - | chr3.3:56702196-56702215 | None:intergenic | 25.0% |
| ! | ACCACATAAAAATTGATTAG+GGG | - | chr3.3:56697706-56697725 | None:intergenic | 25.0% |
| ! | ACGACAATATATAGGAAAAA+GGG | - | chr3.3:56701502-56701521 | None:intergenic | 25.0% |
| ! | AGAAAATAAGAGAAAACGTA+TGG | - | chr3.3:56697192-56697211 | None:intergenic | 25.0% |
| ! | AGCAGTAAAATGAAATAACA+AGG | - | chr3.3:56699798-56699817 | None:intergenic | 25.0% |
| ! | ATAAGCATTAGAAGATATGA+GGG | - | chr3.3:56702225-56702244 | None:intergenic | 25.0% |
| ! | ATGCTTAACTGAAATTAAGA+TGG | + | chr3.3:56698785-56698804 | MS.gene008435:intron | 25.0% |
| ! | ATGTTACAAATCACAATATC+AGG | - | chr3.3:56701622-56701641 | None:intergenic | 25.0% |
| ! | ATTACCAACAATAGTTATGA+TGG | - | chr3.3:56702599-56702618 | None:intergenic | 25.0% |
| ! | ATTATTATCACTTTGTGCAT+AGG | - | chr3.3:56697749-56697768 | None:intergenic | 25.0% |
| ! | ATTTGCAAAATGGAAATGTA+GGG | - | chr3.3:56702186-56702205 | None:intergenic | 25.0% |
| ! | CAATGAAAATAGTCATAAGA+AGG | + | chr3.3:56699516-56699535 | MS.gene008435:CDS | 25.0% |
| ! | CATGTATAGAAGACTTAATA+GGG | + | chr3.3:56701764-56701783 | MS.gene008435:intron | 25.0% |
| ! | CCTACCATAAATATTCAAAT+AGG | - | chr3.3:56698472-56698491 | None:intergenic | 25.0% |
| ! | CCTATTTGAATATTTATGGT+AGG | + | chr3.3:56698469-56698488 | MS.gene008435:intron | 25.0% |
| ! | CCTTCTATAAATTCTTAAAG+GGG | - | chr3.3:56702101-56702120 | None:intergenic | 25.0% |
| ! | GAACCACATAAAAATTGATT+AGG | - | chr3.3:56697708-56697727 | None:intergenic | 25.0% |
| ! | GAAGATATTGATATGCTTAA+AGG | - | chr3.3:56701544-56701563 | None:intergenic | 25.0% |
| ! | GAGATAAAAACAAGAAACAA+AGG | + | chr3.3:56702148-56702167 | MS.gene008435:intron | 25.0% |
| ! | GCACAATAATACTGAATTAT+AGG | - | chr3.3:56697552-56697571 | None:intergenic | 25.0% |
| ! | GCCTTCTATAAATTCTTAAA+GGG | - | chr3.3:56702102-56702121 | None:intergenic | 25.0% |
| ! | GGATGTTTACATTTATTACT+TGG | + | chr3.3:56701445-56701464 | MS.gene008435:intron | 25.0% |
| ! | GGTGTAAAATAATTGTAGAT+GGG | + | chr3.3:56697337-56697356 | MS.gene008435:intron | 25.0% |
| ! | GGTGTAATATAATTGAGAAT+AGG | - | chr3.3:56700477-56700496 | None:intergenic | 25.0% |
| ! | GTAATATGGTTTGAGAAAAT+TGG | - | chr3.3:56697072-56697091 | None:intergenic | 25.0% |
| ! | TATACTAAGTAACAACTAGT+GGG | + | chr3.3:56699258-56699277 | MS.gene008435:intron | 25.0% |
| ! | TATATAGATACATATTTGGG+GGG | - | chr3.3:56700876-56700895 | None:intergenic | 25.0% |
| ! | TATTGTTGCATAAATTTACC+TGG | - | chr3.3:56701361-56701380 | None:intergenic | 25.0% |
| ! | TCTACTCTTAACAGATATAA+TGG | - | chr3.3:56698587-56698606 | None:intergenic | 25.0% |
| ! | TGCAATATTTGTACAAATAG+TGG | + | chr3.3:56700034-56700053 | MS.gene008435:intron | 25.0% |
| ! | TGCCTTCTATAAATTCTTAA+AGG | - | chr3.3:56702103-56702122 | None:intergenic | 25.0% |
| ! | TGGTAATTCTTCTTTATTCT+AGG | + | chr3.3:56701266-56701285 | MS.gene008435:intron | 25.0% |
| ! | TGTTTAAGTGCATAATTACT+TGG | + | chr3.3:56701246-56701265 | MS.gene008435:intron | 25.0% |
| ! | TTACATTTATTACTTGGAGT+AGG | + | chr3.3:56701451-56701470 | MS.gene008435:intron | 25.0% |
| ! | TTAGAATACAAAGGTAACAA+TGG | + | chr3.3:56700000-56700019 | MS.gene008435:intron | 25.0% |
| !! | ATACTCTAAAGATAAGAAAC+TGG | - | chr3.3:56700340-56700359 | None:intergenic | 25.0% |
| !! | ATTTGATACTAACCTGTTTT+CGG | - | chr3.3:56701029-56701048 | None:intergenic | 25.0% |
| !! | CTCTAACAATCTCTTTTATT+GGG | + | chr3.3:56698175-56698194 | MS.gene008435:intron | 25.0% |
| !! | TAATAGGGATATTGCATTTT+TGG | + | chr3.3:56701779-56701798 | MS.gene008435:intron | 25.0% |
| !! | TCTCTAACAATCTCTTTTAT+TGG | + | chr3.3:56698174-56698193 | MS.gene008435:intron | 25.0% |
| !! | TCTTTGCATAGTTTTCATTA+GGG | + | chr3.3:56701424-56701443 | MS.gene008435:intron | 25.0% |
| !! | TTCTTTTATAGAGAAATGCT+AGG | + | chr3.3:56698130-56698149 | MS.gene008435:intron | 25.0% |
| !! | TTTTCTGTCTGAAAAATCAT+AGG | - | chr3.3:56701142-56701161 | None:intergenic | 25.0% |
| !!! | AGTGATTTTGATACATTGTT+TGG | + | chr3.3:56702262-56702281 | MS.gene008435:intron | 25.0% |
| !!! | ATTTTTTTCTCTTTCATGGT+CGG | + | chr3.3:56697884-56697903 | MS.gene008435:intron | 25.0% |
| !!! | TATTTAAGAGTATTTCCACT+AGG | - | chr3.3:56698324-56698343 | None:intergenic | 25.0% |
| !!! | TTTTTTATTTGCAACAGAGA+TGG | + | chr3.3:56701385-56701404 | MS.gene008435:intron | 25.0% |
| AAAAATGTTTCATACCTTGC+AGG | - | chr3.3:56702366-56702385 | None:intergenic | 30.0% | |
| AAAATAAGCTCAATCCAAAC+AGG | - | chr3.3:56700100-56700119 | None:intergenic | 30.0% | |
| AAAATAGTCCTTGAGAACAT+TGG | - | chr3.3:56699660-56699679 | None:intergenic | 30.0% | |
| AAGAAACAAAGGAAGTAAGT+TGG | + | chr3.3:56702159-56702178 | MS.gene008435:intron | 30.0% | |
| AATGAATTCAATGACCAGAT+AGG | - | chr3.3:56698882-56698901 | None:intergenic | 30.0% | |
| ACCAAGACTATTTATGTTTC+AGG | + | chr3.3:56700956-56700975 | MS.gene008435:intron | 30.0% | |
| ACCTGAAACATAAATAGTCT+TGG | - | chr3.3:56700960-56700979 | None:intergenic | 30.0% | |
| AGAGTAAAATTCTCAATCCT+CGG | - | chr3.3:56698737-56698756 | None:intergenic | 30.0% | |
| AGATAAACTAAGAACCAAGT+AGG | - | chr3.3:56700303-56700322 | None:intergenic | 30.0% | |
| AGTATCTAAAAACTTTCAGC+AGG | - | chr3.3:56697834-56697853 | None:intergenic | 30.0% | |
| ATAATTAGATTGAGCCTATC+TGG | + | chr3.3:56698865-56698884 | MS.gene008435:intron | 30.0% | |
| ATAGAAGTCAAGAGCAATAA+GGG | + | chr3.3:56700074-56700093 | MS.gene008435:intron | 30.0% | |
| ATCAAGATATCAGTGACATT+GGG | - | chr3.3:56698974-56698993 | None:intergenic | 30.0% | |
| ATGTTCAATACCATATGCTA+CGG | - | chr3.3:56698668-56698687 | None:intergenic | 30.0% | |
| CAAATGTTTAGGAATCAAAC+GGG | - | chr3.3:56701724-56701743 | None:intergenic | 30.0% | |
| CACGACAATATATAGGAAAA+AGG | - | chr3.3:56701503-56701522 | None:intergenic | 30.0% | |
| CATAAGAAGGTTTCTTTGAT+GGG | + | chr3.3:56699529-56699548 | MS.gene008435:CDS | 30.0% | |
| CATGTTTAAACGAGAAACAA+AGG | - | chr3.3:56702469-56702488 | None:intergenic | 30.0% | |
| CCATGTATAGAAGACTTAAT+AGG | + | chr3.3:56701763-56701782 | MS.gene008435:intron | 30.0% | |
| CCTATTAAGTCTTCTATACA+TGG | - | chr3.3:56701766-56701785 | None:intergenic | 30.0% | |
| CGACAATATATAGGAAAAAG+GGG | - | chr3.3:56701501-56701520 | None:intergenic | 30.0% | |
| CTAAAATAAGCCAATCCAAA+CGG | + | chr3.3:56700275-56700294 | MS.gene008435:intron | 30.0% | |
| CTAGATGAGCTTAATAATGA+AGG | + | chr3.3:56701650-56701669 | MS.gene008435:CDS | 30.0% | |
| CTATCCATCATAACTATTGT+TGG | + | chr3.3:56702592-56702611 | MS.gene008435:intron | 30.0% | |
| CTGCTGCAACTTTAAATTAT+AGG | - | chr3.3:56702649-56702668 | None:intergenic | 30.0% | |
| GACAATATATAGGAAAAAGG+GGG | - | chr3.3:56701500-56701519 | None:intergenic | 30.0% | |
| GAGTAAATATCATGAAGTGA+AGG | - | chr3.3:56698627-56698646 | None:intergenic | 30.0% | |
| GATAAACTAAGAACCAAGTA+GGG | - | chr3.3:56700302-56700321 | None:intergenic | 30.0% | |
| GATATTGATATGCTTAAAGG+TGG | - | chr3.3:56701541-56701560 | None:intergenic | 30.0% | |
| GATTTGCAAAATGGAAATGT+AGG | - | chr3.3:56702187-56702206 | None:intergenic | 30.0% | |
| GCAAATGTTTAGGAATCAAA+CGG | - | chr3.3:56701725-56701744 | None:intergenic | 30.0% | |
| GCATAAATTTACCTGGAAAA+GGG | - | chr3.3:56701354-56701373 | None:intergenic | 30.0% | |
| GGGTGTAAAATAATTGTAGA+TGG | + | chr3.3:56697336-56697355 | MS.gene008435:intron | 30.0% | |
| GTATACTAAGTAACAACTAG+TGG | + | chr3.3:56699257-56699276 | MS.gene008435:intron | 30.0% | |
| GTCAATATAAAAGTTGTACG+TGG | - | chr3.3:56701056-56701075 | None:intergenic | 30.0% | |
| GTCCAATGTCAATCTTTAAA+GGG | - | chr3.3:56697494-56697513 | None:intergenic | 30.0% | |
| TAAAACTCAGAATCTTGTTG+TGG | - | chr3.3:56697047-56697066 | None:intergenic | 30.0% | |
| TAAGCATTAGAAGATATGAG+GGG | - | chr3.3:56702224-56702243 | None:intergenic | 30.0% | |
| TACTGCTATTATCTTATGCT+AGG | + | chr3.3:56699811-56699830 | MS.gene008435:intron | 30.0% | |
| TAGCTGACACTAAAGAATAA+GGG | - | chr3.3:56702504-56702523 | None:intergenic | 30.0% | |
| TATCAAGATATCAGTGACAT+TGG | - | chr3.3:56698975-56698994 | None:intergenic | 30.0% | |
| TATCCAACACGACAATATAT+AGG | - | chr3.3:56701510-56701529 | None:intergenic | 30.0% | |
| TCACAACAATATCAACCATT+GGG | + | chr3.3:56699333-56699352 | MS.gene008435:intron | 30.0% | |
| TCATAAGAAGGTTTCTTTGA+TGG | + | chr3.3:56699528-56699547 | MS.gene008435:CDS | 30.0% | |
| TCTTATATGATGTGTACAGA+TGG | + | chr3.3:56698038-56698057 | MS.gene008435:intron | 30.0% | |
| TGCATAAATTTACCTGGAAA+AGG | - | chr3.3:56701355-56701374 | None:intergenic | 30.0% | |
| TTAAGATGGTTAAAATACCC+TGG | + | chr3.3:56698799-56698818 | MS.gene008435:intron | 30.0% | |
| TTACTGTTTAATAGTGGTAG+TGG | + | chr3.3:56697599-56697618 | MS.gene008435:intron | 30.0% | |
| TTAGCTGACACTAAAGAATA+AGG | - | chr3.3:56702505-56702524 | None:intergenic | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | + | chr3.3:56702028-56702047 | MS.gene008435:intron | 30.0% | |
| TTTCCTATATATTGTCGTGT+TGG | + | chr3.3:56701504-56701523 | MS.gene008435:intron | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | + | chr3.3:56702027-56702046 | MS.gene008435:intron | 30.0% | |
| ! | AAAACTCAGAATCTTGTTGT+GGG | - | chr3.3:56697046-56697065 | None:intergenic | 30.0% |
| ! | AATATCTTCTTTTGCACTAG+AGG | - | chr3.3:56699900-56699919 | None:intergenic | 30.0% |
| ! | ATTACATTTTTCTGTTCTCC+TGG | + | chr3.3:56699766-56699785 | MS.gene008435:intron | 30.0% |
| ! | CCCCTTTAAGAATTTATAGA+AGG | + | chr3.3:56702098-56702117 | MS.gene008435:intron | 30.0% |
| ! | CGAGCAGAAATAATTTTATG+TGG | + | chr3.3:56702412-56702431 | MS.gene008435:intron | 30.0% |
| ! | GTCTTTGCATAGTTTTCATT+AGG | + | chr3.3:56701423-56701442 | MS.gene008435:intron | 30.0% |
| ! | TCCCCTAATCAATTTTTATG+TGG | + | chr3.3:56697702-56697721 | MS.gene008435:intron | 30.0% |
| ! | TGACTATTTTCGTGTTTACA+AGG | + | chr3.3:56699232-56699251 | MS.gene008435:CDS | 30.0% |
| ! | TGGGAAAGTTTAGAATACAA+AGG | + | chr3.3:56699991-56700010 | MS.gene008435:intron | 30.0% |
| ! | TTCTCATTTTCTGTCTCTTT+TGG | + | chr3.3:56697108-56697127 | MS.gene008435:intron | 30.0% |
| !! | AATCAAGCTTTGATAGTGTA+TGG | - | chr3.3:56699367-56699386 | None:intergenic | 30.0% |
| !! | TTATATTGACTCAAGCTGTT+GGG | + | chr3.3:56701066-56701085 | MS.gene008435:intron | 30.0% |
| !! | TTTATATTGACTCAAGCTGT+TGG | + | chr3.3:56701065-56701084 | MS.gene008435:intron | 30.0% |
| !!! | TAAAGGGCATTTTTCTTTGA+TGG | - | chr3.3:56697478-56697497 | None:intergenic | 30.0% |
| !!! | TCTCTTATTTTCTTCTTACC+AGG | + | chr3.3:56697199-56697218 | MS.gene008435:intron | 30.0% |
| AAAGTCATCGTTCAAAGTGA+AGG | - | chr3.3:56697409-56697428 | None:intergenic | 35.0% | |
| AAATGGATGTCTTATGGCAA+CGG | + | chr3.3:56697250-56697269 | MS.gene008435:CDS | 35.0% | |
| AAATTCCCTTCTTCCAAAGT+AGG | - | chr3.3:56697385-56697404 | None:intergenic | 35.0% | |
| AAATTTACCTGGAAAAGGGT+GGG | - | chr3.3:56701350-56701369 | None:intergenic | 35.0% | |
| AAGAGACAGAAAATGAGAAC+TGG | - | chr3.3:56697107-56697126 | None:intergenic | 35.0% | |
| AAGATATTAATGTTGTGCGG+TGG | + | chr3.3:56699912-56699931 | MS.gene008435:CDS | 35.0% | |
| AATCATGTAGCATTCTGCAT+TGG | - | chr3.3:56698449-56698468 | None:intergenic | 35.0% | |
| AATGATGTCTTTATTGCGTG+TGG | + | chr3.3:56698397-56698416 | MS.gene008435:intron | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | - | chr3.3:56701939-56701958 | None:intergenic | 35.0% | |
| ACTACTGTTTCAGATGACTT+TGG | + | chr3.3:56699012-56699031 | MS.gene008435:intron | 35.0% | |
| AGAGAGGATATGAGAAAAGT+GGG | - | chr3.3:56700804-56700823 | None:intergenic | 35.0% | |
| AGAGGGTAAAAATGTCAAGA+AGG | - | chr3.3:56697861-56697880 | None:intergenic | 35.0% | |
| AGATATTAATGTTGTGCGGT+GGG | + | chr3.3:56699913-56699932 | MS.gene008435:CDS | 35.0% | |
| AGCTGACACTAAAGAATAAG+GGG | - | chr3.3:56702503-56702522 | None:intergenic | 35.0% | |
| AGTAGACTTAATGCATGTGT+TGG | + | chr3.3:56698601-56698620 | MS.gene008435:intron | 35.0% | |
| AGTGCTATGAAAACTCATGT+GGG | - | chr3.3:56698257-56698276 | None:intergenic | 35.0% | |
| ATACTGAATTATAGGGAGAG+AGG | - | chr3.3:56697544-56697563 | None:intergenic | 35.0% | |
| ATCATACACCAATGTTCTCA+AGG | + | chr3.3:56699649-56699668 | MS.gene008435:CDS | 35.0% | |
| ATTCATCAGGAATCATGCTT+AGG | - | chr3.3:56699742-56699761 | None:intergenic | 35.0% | |
| CATAGAAGTCAAGAGCAATA+AGG | + | chr3.3:56700073-56700092 | MS.gene008435:intron | 35.0% | |
| CATGATGAAAGATCAGAACT+GGG | - | chr3.3:56698701-56698720 | None:intergenic | 35.0% | |
| CATTTATTACTTGGAGTAGG+AGG | + | chr3.3:56701454-56701473 | MS.gene008435:intron | 35.0% | |
| CCATTCTATACAACATAAGC+AGG | - | chr3.3:56700588-56700607 | None:intergenic | 35.0% | |
| CCTGCTTATGTTGTATAGAA+TGG | + | chr3.3:56700585-56700604 | MS.gene008435:intron | 35.0% | |
| CTGCGTTTACTGTTTAATAG+TGG | + | chr3.3:56697593-56697612 | MS.gene008435:intron | 35.0% | |
| GAAATAACAAGGACAATACC+AGG | - | chr3.3:56699787-56699806 | None:intergenic | 35.0% | |
| GAGAAGATCATACTGATATG+TGG | - | chr3.3:56698358-56698377 | None:intergenic | 35.0% | |
| GATCGTCTAGCATAATTACT+TGG | + | chr3.3:56701221-56701240 | MS.gene008435:intron | 35.0% | |
| GGAACTGGATAAAAGACTAA+AGG | - | chr3.3:56697677-56697696 | None:intergenic | 35.0% | |
| GGAAGAATCAATCACTTTGA+TGG | - | chr3.3:56697998-56698017 | None:intergenic | 35.0% | |
| GGATGTAACTAACCGTAATA+TGG | - | chr3.3:56697086-56697105 | None:intergenic | 35.0% | |
| GGTCCAATGTCAATCTTTAA+AGG | - | chr3.3:56697495-56697514 | None:intergenic | 35.0% | |
| GGTTCTTAGTTTATCTCCTA+GGG | + | chr3.3:56700307-56700326 | MS.gene008435:intron | 35.0% | |
| GTCACAACAATATCAACCAT+TGG | + | chr3.3:56699332-56699351 | MS.gene008435:intron | 35.0% | |
| GTTGCAATCTGGAAAACATA+AGG | + | chr3.3:56699952-56699971 | MS.gene008435:CDS | 35.0% | |
| TAAATTTACCTGGAAAAGGG+TGG | - | chr3.3:56701351-56701370 | None:intergenic | 35.0% | |
| TAAGCAGGTGAATACTTTGT+AGG | - | chr3.3:56700573-56700592 | None:intergenic | 35.0% | |
| TACTGAATTATAGGGAGAGA+GGG | - | chr3.3:56697543-56697562 | None:intergenic | 35.0% | |
| TACTGTGTGTGATTCATTAC+AGG | + | chr3.3:56700613-56700632 | MS.gene008435:intron | 35.0% | |
| TAGAGAGGATATGAGAAAAG+TGG | - | chr3.3:56700805-56700824 | None:intergenic | 35.0% | |
| TATGGTAGGAGAATTGTTGT+AGG | + | chr3.3:56698483-56698502 | MS.gene008435:intron | 35.0% | |
| TGGTTCTTAGTTTATCTCCT+AGG | + | chr3.3:56700306-56700325 | MS.gene008435:intron | 35.0% | |
| TGTATGGTAAATAGACCCAA+TGG | - | chr3.3:56699351-56699370 | None:intergenic | 35.0% | |
| TGTTAATTACCCGTAGCATA+TGG | + | chr3.3:56698655-56698674 | MS.gene008435:intron | 35.0% | |
| TGTTCAATACCATATGCTAC+GGG | - | chr3.3:56698667-56698686 | None:intergenic | 35.0% | |
| TTATGACGAGACTTTACTGA+TGG | + | chr3.3:56701094-56701113 | MS.gene008435:intron | 35.0% | |
| TTATTGGGTGAAACTCATGT+GGG | + | chr3.3:56698190-56698209 | MS.gene008435:intron | 35.0% | |
| TTGATTTCATGTTCTGTCCA+GGG | + | chr3.3:56699493-56699512 | MS.gene008435:intron | 35.0% | |
| TTGTCGTGTTGGATAAGAAA+AGG | + | chr3.3:56701515-56701534 | MS.gene008435:intron | 35.0% | |
| TTGTGCCTACAAAAAGGATT+AGG | - | chr3.3:56700700-56700719 | None:intergenic | 35.0% | |
| TTTATTGGGTGAAACTCATG+TGG | + | chr3.3:56698189-56698208 | MS.gene008435:intron | 35.0% | |
| ! | AATCAGCGTTTTCTTTTTCC+AGG | + | chr3.3:56699624-56699643 | MS.gene008435:intron | 35.0% |
| ! | AATCCTTTTTGTAGGCACAA+GGG | + | chr3.3:56700700-56700719 | MS.gene008435:intron | 35.0% |
| ! | AGTCACTTTAGTCCCTAAAT+CGG | + | chr3.3:56701893-56701912 | MS.gene008435:intron | 35.0% |
| ! | ATCAATCACTTTGATGGCTA+TGG | - | chr3.3:56697992-56698011 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAATTGTCAGAT+AGG | + | chr3.3:56701183-56701202 | MS.gene008435:intron | 35.0% |
| ! | GGAAAAAGAAAACGCTGATT+AGG | - | chr3.3:56699624-56699643 | None:intergenic | 35.0% |
| ! | GTCTTCCTAATCCTTTTTGT+AGG | + | chr3.3:56700692-56700711 | MS.gene008435:intron | 35.0% |
| ! | GTTTTCGGATGTACACAAAA+TGG | - | chr3.3:56701014-56701033 | None:intergenic | 35.0% |
| ! | TAATCCTTTTTGTAGGCACA+AGG | + | chr3.3:56700699-56700718 | MS.gene008435:intron | 35.0% |
| ! | TACATTGTTTGGTAGCAGAA+TGG | + | chr3.3:56702273-56702292 | MS.gene008435:intron | 35.0% |
| ! | TATGACTATTTTCATTGCCC+TGG | - | chr3.3:56699513-56699532 | None:intergenic | 35.0% |
| ! | TGCCCTTTAAAGATTGACAT+TGG | + | chr3.3:56697489-56697508 | MS.gene008435:CDS | 35.0% |
| ! | TTTTGTGTACATCCGAAAAC+AGG | + | chr3.3:56701014-56701033 | MS.gene008435:CDS | 35.0% |
| !! | AAATGAGTGTTGCTTGACAA+CGG | + | chr3.3:56698930-56698949 | MS.gene008435:intron | 35.0% |
| !! | ATAGCAGCATCGACATAATT+TGG | - | chr3.3:56702528-56702547 | None:intergenic | 35.0% |
| !! | CATGCTTAATATTTTTGCCG+AGG | + | chr3.3:56698717-56698736 | MS.gene008435:intron | 35.0% |
| !! | TTGTTGGTAATGAATACTGC+AGG | + | chr3.3:56702608-56702627 | MS.gene008435:intron | 35.0% |
| AAAATCAACTCCCTCTCAAC+TGG | - | chr3.3:56697781-56697800 | None:intergenic | 40.0% | |
| AAAGCGTAACTGAGTTTCCA+AGG | - | chr3.3:56702310-56702329 | None:intergenic | 40.0% | |
| AACATTGGTGTATGATGTCC+TGG | - | chr3.3:56699645-56699664 | None:intergenic | 40.0% | |
| AAGATATCAGTGACATTGGG+TGG | - | chr3.3:56698971-56698990 | None:intergenic | 40.0% | |
| AAGCGTAACTGAGTTTCCAA+GGG | - | chr3.3:56702309-56702328 | None:intergenic | 40.0% | |
| ACATTACTCTACAACCTTCC+AGG | - | chr3.3:56698820-56698839 | None:intergenic | 40.0% | |
| ACGCAAATTACTACCTCTCA+AGG | - | chr3.3:56698019-56698038 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | - | chr3.3:56701971-56701990 | None:intergenic | 40.0% | |
| ACTTTAGTCCCTAAATCGGA+AGG | + | chr3.3:56701897-56701916 | MS.gene008435:intron | 40.0% | |
| AGTCAAAGAACTCCATAGGT+TGG | + | chr3.3:56702667-56702686 | MS.gene008435:CDS | 40.0% | |
| AGTTTATCTCCTAGGGTCTA+GGG | + | chr3.3:56700314-56700333 | MS.gene008435:intron | 40.0% | |
| ATCTGATCCTGAAGATCACA+AGG | - | chr3.3:56698767-56698786 | None:intergenic | 40.0% | |
| ATTGTAGATGGGAAACATCC+TGG | + | chr3.3:56697348-56697367 | MS.gene008435:intron | 40.0% | |
| CATTACTCTACAACCTTCCA+GGG | - | chr3.3:56698819-56698838 | None:intergenic | 40.0% | |
| CATTAGAAGATATGAGGGGA+TGG | - | chr3.3:56702220-56702239 | None:intergenic | 40.0% | |
| CTTCATTCCTTGTGATCTTC+AGG | + | chr3.3:56698757-56698776 | MS.gene008435:intron | 40.0% | |
| CTTCTGAACTTAGGGGAAAA+TGG | + | chr3.3:56699858-56699877 | MS.gene008435:CDS | 40.0% | |
| CTTTAGTCCCTAAATCGGAA+GGG | + | chr3.3:56701898-56701917 | MS.gene008435:intron | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | - | chr3.3:56701940-56701959 | None:intergenic | 40.0% | |
| GAGCTGTAGTGTGTACATTT+CGG | + | chr3.3:56698508-56698527 | MS.gene008435:intron | 40.0% | |
| GAGTGCTATGAAAACTCATG+TGG | - | chr3.3:56698258-56698277 | None:intergenic | 40.0% | |
| GATGGTTAAAATACCCTGGA+AGG | + | chr3.3:56698803-56698822 | MS.gene008435:intron | 40.0% | |
| GATTAGGGGAAAAATGGAAC+TGG | - | chr3.3:56697692-56697711 | None:intergenic | 40.0% | |
| GCATGATGAAAGATCAGAAC+TGG | - | chr3.3:56698702-56698721 | None:intergenic | 40.0% | |
| GTGTTCCTATTGACCCAAAT+CGG | + | chr3.3:56701297-56701316 | MS.gene008435:CDS | 40.0% | |
| GTTTGTCAAGGACTAGGATT+TGG | + | chr3.3:56699280-56699299 | MS.gene008435:intron | 40.0% | |
| TAGTGGTCACTAGAAGCAAT+AGG | + | chr3.3:56697616-56697635 | MS.gene008435:intron | 40.0% | |
| TAGTTTATCTCCTAGGGTCT+AGG | + | chr3.3:56700313-56700332 | MS.gene008435:intron | 40.0% | |
| TCAAAACTTACTCGCTACTG+AGG | + | chr3.3:56699700-56699719 | MS.gene008435:CDS | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | - | chr3.3:56702095-56702076 | None:intergenic | 40.0% | |
| TGGCATGAAAGATCATAGAG+AGG | - | chr3.3:56700820-56700839 | None:intergenic | 40.0% | |
| TTCATTGTTGGGTGTGTGAT+GGG | + | chr3.3:56699076-56699095 | MS.gene008435:CDS | 40.0% | |
| TTGAGAGCTGATGTTAATGG+TGG | + | chr3.3:56701674-56701693 | MS.gene008435:CDS | 40.0% | |
| ! | AGCTGTTGCTTCTGAACTTA+GGG | + | chr3.3:56699850-56699869 | MS.gene008435:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3.3:56702074-56702093 | None:intergenic | 40.0% |
| ! | ATCAGTCCTACTTTGGAAGA+AGG | + | chr3.3:56697376-56697395 | MS.gene008435:CDS | 40.0% |
| ! | GTGATTGATTCTTCCTTGAG+AGG | + | chr3.3:56698003-56698022 | MS.gene008435:CDS | 40.0% |
| ! | GTTGATTTCATGTTCTGTCC+AGG | + | chr3.3:56699492-56699511 | MS.gene008435:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3.3:56702006-56701987 | None:intergenic | 40.0% |
| ! | TCAGTCCTACTTTGGAAGAA+GGG | + | chr3.3:56697377-56697396 | MS.gene008435:CDS | 40.0% |
| ! | TGGGTCTCAAACTTTGGAAA+TGG | - | chr3.3:56698238-56698257 | None:intergenic | 40.0% |
| ! | TTGATGGCTATGGTCATCAA+TGG | - | chr3.3:56697982-56698001 | None:intergenic | 40.0% |
| !! | AACAACTAGTGGGTTTGTCA+AGG | + | chr3.3:56699268-56699287 | MS.gene008435:intron | 40.0% |
| !! | ACGAAGAGGTGTTCATTGTT+GGG | + | chr3.3:56699065-56699084 | MS.gene008435:CDS | 40.0% |
| !! | AGTCTGCATACTGATTTGTG+TGG | + | chr3.3:56697315-56697334 | MS.gene008435:intron | 40.0% |
| !! | CAAGGGCATTGTTGTAAGAT+TGG | - | chr3.3:56697443-56697462 | None:intergenic | 40.0% |
| !! | GTCTGCATACTGATTTGTGT+GGG | + | chr3.3:56697316-56697335 | MS.gene008435:intron | 40.0% |
| !! | TTGGTAATGAATACTGCAGG+AGG | + | chr3.3:56702611-56702630 | MS.gene008435:intron | 40.0% |
| AAGAGCAATAAGGGCCTGTT+TGG | + | chr3.3:56700083-56700102 | MS.gene008435:intron | 45.0% | |
| AAGTAGACACAGTCACCTAG+TGG | + | chr3.3:56698306-56698325 | MS.gene008435:intron | 45.0% | |
| ACCTTTGCAAAAAGCCTGCA+AGG | + | chr3.3:56702349-56702368 | MS.gene008435:CDS | 45.0% | |
| ATGAGGGGATGGCAATGAAA+AGG | - | chr3.3:56702209-56702228 | None:intergenic | 45.0% | |
| ATGCAAAGACTTGAGCCAGA+GGG | - | chr3.3:56701413-56701432 | None:intergenic | 45.0% | |
| ATGTCTTCACTCCAGTTGAG+AGG | + | chr3.3:56697767-56697786 | MS.gene008435:CDS | 45.0% | |
| ATGTGGTTCAGCCTGCAAAA+AGG | + | chr3.3:56697719-56697738 | MS.gene008435:intron | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | - | chr3.3:56702015-56702034 | None:intergenic | 45.0% | |
| CAACCCTTGTGCCTACAAAA+AGG | - | chr3.3:56700706-56700725 | None:intergenic | 45.0% | |
| CACATACTCTGGGTCTATAG+TGG | + | chr3.3:56699042-56699061 | MS.gene008435:CDS | 45.0% | |
| CAGCAGTCAAAGAACTCCAT+AGG | + | chr3.3:56702663-56702682 | MS.gene008435:CDS | 45.0% | |
| CCTAGCAACAACAGTGATTC+AGG | - | chr3.3:56698545-56698564 | None:intergenic | 45.0% | |
| CCTGAATCACTGTTGTTGCT+AGG | + | chr3.3:56698542-56698561 | MS.gene008435:intron | 45.0% | |
| CTCAAGACTTACGCCAAGAA+AGG | - | chr3.3:56699568-56699587 | None:intergenic | 45.0% | |
| CTCATGTGGGTCTCAAACTT+TGG | - | chr3.3:56698244-56698263 | None:intergenic | 45.0% | |
| CTGATGTTTGCTTGGATTGC+TGG | + | chr3.3:56697956-56697975 | MS.gene008435:CDS | 45.0% | |
| GACGAATCCCTTCCGATTTA+GGG | - | chr3.3:56701908-56701927 | None:intergenic | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | - | chr3.3:56701972-56701991 | None:intergenic | 45.0% | |
| GATGTCAGATACTGCTGCAA+GGG | + | chr3.3:56697931-56697950 | MS.gene008435:CDS | 45.0% | |
| GCATAAGGAAACAGCTTTCC+TGG | - | chr3.3:56697220-56697239 | None:intergenic | 45.0% | |
| GGCAGAGTAAACTTATGCCA+AGG | - | chr3.3:56698428-56698447 | None:intergenic | 45.0% | |
| GGCTTGAGAGCTGATGTTAA+TGG | + | chr3.3:56701671-56701690 | MS.gene008435:CDS | 45.0% | |
| GGGGAAAATGGCAAGACAAT+AGG | + | chr3.3:56699870-56699889 | MS.gene008435:CDS | 45.0% | |
| GTTCATTGTTGGGTGTGTGA+TGG | + | chr3.3:56699075-56699094 | MS.gene008435:CDS | 45.0% | |
| TACTGCAGGAGGAGATAGAA+AGG | + | chr3.3:56702622-56702641 | MS.gene008435:intron | 45.0% | |
| TACTTACCCCAGGCTAGATA+TGG | + | chr3.3:56700758-56700777 | MS.gene008435:CDS | 45.0% | |
| TATGCAAAGACTTGAGCCAG+AGG | - | chr3.3:56701414-56701433 | None:intergenic | 45.0% | |
| TATTGCGTGTGGTCATTCCT+TGG | + | chr3.3:56698408-56698427 | MS.gene008435:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3.3:56701999-56702018 | MS.gene008435:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3.3:56702003-56702022 | None:intergenic | 45.0% | |
| TGACGAATCCCTTCCGATTT+AGG | - | chr3.3:56701909-56701928 | None:intergenic | 45.0% | |
| TGATGTCAGATACTGCTGCA+AGG | + | chr3.3:56697930-56697949 | MS.gene008435:CDS | 45.0% | |
| TGCAAGCAGTTGTTGCAATC+TGG | + | chr3.3:56699941-56699960 | MS.gene008435:CDS | 45.0% | |
| TGCTGCTCTTCATCCTTTCT+TGG | + | chr3.3:56699552-56699571 | MS.gene008435:CDS | 45.0% | |
| TGGCTTCAAGCACATACTCT+GGG | + | chr3.3:56699032-56699051 | MS.gene008435:CDS | 45.0% | |
| TGTCTTCACTCCAGTTGAGA+GGG | + | chr3.3:56697768-56697787 | MS.gene008435:CDS | 45.0% | |
| TGTTCTGCTATACTTACCCC+AGG | + | chr3.3:56700748-56700767 | MS.gene008435:CDS | 45.0% | |
| TTCAGAAGCAACAGCTGCAA+AGG | - | chr3.3:56699846-56699865 | None:intergenic | 45.0% | |
| TTGGCTTCAAGCACATACTC+TGG | + | chr3.3:56699031-56699050 | MS.gene008435:CDS | 45.0% | |
| ! | ACCTTGCAGGCTTTTTGCAA+AGG | - | chr3.3:56702353-56702372 | None:intergenic | 45.0% |
| ! | CAGCTGTTGCTTCTGAACTT+AGG | + | chr3.3:56699849-56699868 | MS.gene008435:intron | 45.0% |
| ! | GCTGTTGCTTCTGAACTTAG+GGG | + | chr3.3:56699851-56699870 | MS.gene008435:intron | 45.0% |
| ! | GTTACATCGACTGTGTAGAC+AGG | - | chr3.3:56697516-56697535 | None:intergenic | 45.0% |
| ! | TGGGTCTCGTCACTTTATGT+GGG | + | chr3.3:56698209-56698228 | MS.gene008435:intron | 45.0% |
| ! | TGTTTGGTAGCAGAATGGAG+TGG | + | chr3.3:56702278-56702297 | MS.gene008435:intron | 45.0% |
| !! | GACGAAGAGGTGTTCATTGT+TGG | + | chr3.3:56699064-56699083 | MS.gene008435:CDS | 45.0% |
| !! | GATGGAGTTTTCGAGCTCAA+GGG | - | chr3.3:56697460-56697479 | None:intergenic | 45.0% |
| !! | TAGTGGGTTTGTCAAGGACT+AGG | + | chr3.3:56699274-56699293 | MS.gene008435:intron | 45.0% |
| !! | TGATGGAGTTTTCGAGCTCA+AGG | - | chr3.3:56697461-56697480 | None:intergenic | 45.0% |
| !!! | TCTTTTTTTTTTTTTTTTTT+TGG | - | chr3.3:56699397-56699416 | None:intergenic | 5.0% |
| AAGTAGGACTGATCACAGCC+AGG | - | chr3.3:56697369-56697388 | None:intergenic | 50.0% | |
| ACAGACCTCCATATCTAGCC+TGG | - | chr3.3:56700769-56700788 | None:intergenic | 50.0% | |
| AGAACCAAGTAGGGTCCGTT+TGG | - | chr3.3:56700293-56700312 | None:intergenic | 50.0% | |
| AGACCTCCATATCTAGCCTG+GGG | - | chr3.3:56700767-56700786 | None:intergenic | 50.0% | |
| CAAGTAGGGTCCGTTTGGAT+TGG | - | chr3.3:56700288-56700307 | None:intergenic | 50.0% | |
| CAATCCAAACGGACCCTACT+TGG | + | chr3.3:56700286-56700305 | MS.gene008435:intron | 50.0% | |
| CAGACCTCCATATCTAGCCT+GGG | - | chr3.3:56700768-56700787 | None:intergenic | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | - | chr3.3:56702069-56702088 | None:intergenic | 50.0% | |
| GAATGGAGTGGAACTTCCCT+TGG | + | chr3.3:56702290-56702309 | MS.gene008435:intron | 50.0% | |
| GACGAATCCTCTCCCATTCA+GGG | + | chr3.3:56702059-56702078 | MS.gene008435:intron | 50.0% | |
| GGATGTCTTATGGCAACGGT+AGG | + | chr3.3:56697254-56697273 | MS.gene008435:intron | 50.0% | |
| GGCTGTGATCAGTCCTACTT+TGG | + | chr3.3:56697369-56697388 | MS.gene008435:CDS | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3.3:56701998-56702017 | MS.gene008435:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3.3:56702004-56702023 | None:intergenic | 50.0% | |
| TGACGAATCCTCTCCCATTC+AGG | + | chr3.3:56702058-56702077 | MS.gene008435:intron | 50.0% | |
| TTACCCCAGGCTAGATATGG+AGG | + | chr3.3:56700761-56700780 | MS.gene008435:CDS | 50.0% | |
| ! | GCATAGGCATGCCTTTTTGC+AGG | - | chr3.3:56697733-56697752 | None:intergenic | 50.0% |
| ! | GGGTCTCGTCACTTTATGTG+GGG | + | chr3.3:56698210-56698229 | MS.gene008435:intron | 50.0% |
| ! | GTGGGTCTCGTCACTTTATG+TGG | + | chr3.3:56698208-56698227 | MS.gene008435:intron | 50.0% |
| ! | TCTCTTTCATGGTCGGCTCT+AGG | + | chr3.3:56697891-56697910 | MS.gene008435:intron | 50.0% |
| ! | TGTGTGATGGGAAGGCTAGA+AGG | + | chr3.3:56699088-56699107 | MS.gene008435:CDS | 50.0% |
| ! | TTGTTGGGTGTGTGATGGGA+AGG | + | chr3.3:56699080-56699099 | MS.gene008435:CDS | 50.0% |
| !! | CAAACTCGTCGCACCGATTT+GGG | - | chr3.3:56701313-56701332 | None:intergenic | 50.0% |
| !! | CAAGGGTGCTGATGTTTGCT+TGG | + | chr3.3:56697948-56697967 | MS.gene008435:CDS | 50.0% |
| !! | CTAGGATTTGGTGCAGTCGA+TGG | + | chr3.3:56699292-56699311 | MS.gene008435:intron | 50.0% |
| !! | TCAAACTCGTCGCACCGATT+TGG | - | chr3.3:56701314-56701333 | None:intergenic | 50.0% |
| !! | TCGCACCGATTTGGGTCAAT+AGG | - | chr3.3:56701305-56701324 | None:intergenic | 50.0% |
| !! | TGGGTCTATAGTGGACGAAG+AGG | + | chr3.3:56699051-56699070 | MS.gene008435:CDS | 50.0% |
| AGAAACTGGCCCTAGACCCT+AGG | - | chr3.3:56700326-56700345 | None:intergenic | 55.0% | |
| GCAACAGAGATGGTTCCCTC+TGG | + | chr3.3:56701395-56701414 | MS.gene008435:intron | 55.0% | |
| ! | CACAGTACCCACCCTTTTCC+AGG | + | chr3.3:56701340-56701359 | MS.gene008435:CDS | 55.0% |
| ! | CTGGAAAAGGGTGGGTACTG+TGG | - | chr3.3:56701342-56701361 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 56697038 | 56702692 | 56697038 | ID=MS.gene008435 |
| chr3.3 | mRNA | 56697038 | 56702692 | 56697038 | ID=MS.gene008435.t1;Parent=MS.gene008435 |
| chr3.3 | exon | 56697038 | 56697092 | 56697038 | ID=MS.gene008435.t1.exon1;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56697038 | 56697092 | 56697038 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56697221 | 56697271 | 56697221 | ID=MS.gene008435.t1.exon2;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56697221 | 56697271 | 56697221 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56697355 | 56697530 | 56697355 | ID=MS.gene008435.t1.exon3;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56697355 | 56697530 | 56697355 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56697730 | 56697807 | 56697730 | ID=MS.gene008435.t1.exon4;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56697730 | 56697807 | 56697730 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56697913 | 56698024 | 56697913 | ID=MS.gene008435.t1.exon5;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56697913 | 56698024 | 56697913 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56699025 | 56699109 | 56699025 | ID=MS.gene008435.t1.exon6;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56699025 | 56699109 | 56699025 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56699202 | 56699253 | 56699202 | ID=MS.gene008435.t1.exon7;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56699202 | 56699253 | 56699202 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56699514 | 56699575 | 56699514 | ID=MS.gene008435.t1.exon8;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56699514 | 56699575 | 56699514 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56699646 | 56699761 | 56699646 | ID=MS.gene008435.t1.exon9;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56699646 | 56699761 | 56699646 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56699852 | 56699973 | 56699852 | ID=MS.gene008435.t1.exon10;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56699852 | 56699973 | 56699852 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56700714 | 56700782 | 56700714 | ID=MS.gene008435.t1.exon11;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56700714 | 56700782 | 56700714 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56700978 | 56701035 | 56700978 | ID=MS.gene008435.t1.exon12;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56700978 | 56701035 | 56700978 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56701288 | 56701361 | 56701288 | ID=MS.gene008435.t1.exon13;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56701288 | 56701361 | 56701288 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56701647 | 56701695 | 56701647 | ID=MS.gene008435.t1.exon14;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56701647 | 56701695 | 56701647 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56702291 | 56702370 | 56702291 | ID=MS.gene008435.t1.exon15;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56702291 | 56702370 | 56702291 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| chr3.3 | exon | 56702630 | 56702692 | 56702630 | ID=MS.gene008435.t1.exon16;Parent=MS.gene008435.t1 |
| chr3.3 | CDS | 56702630 | 56702692 | 56702630 | ID=cds.MS.gene008435.t1;Parent=MS.gene008435.t1 |
| Gene Sequence |
| Protein sequence |
