AlfalfaGEDB | MS.gene020523

M. sativa cultivar XinJiangDaYe / MS.gene020523

KEGG: K02981
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00333.23 PF03719.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020523.t1	XP_003630949.1	99.6	279	1	0	1	279	1	279	6.20E-129	470.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020523.t1	Q9SCM3	92.3	221	17	0	45	265	41	261	1.3e-116	420.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020523.t1	G7LAL7	99.6	279	1	0	1	279	1	279	4.4e-129	470.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008435	MS.gene020523	PPI
MS.gene014807	MS.gene020523	PPI
MS.gene014808	MS.gene020523	PPI
MS.gene014809	MS.gene020523	PPI
MS.gene015652	MS.gene020523	PPI
MS.gene020523	MS.gene83062	PPI
MS.gene020523	MS.gene039608	PPI
MS.gene020525	MS.gene020523	PPI
MS.gene026524	MS.gene020523	PPI
MS.gene034801	MS.gene020523	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020523.t1	MTR_8g105340	99.642	279	1	0	1	279	1	279	0.0	559
MS.gene020523.t1	MTR_8g105340	96.416	279	1	1	1	279	1	270	0.0	535
MS.gene020523.t1	MTR_1g032450	94.662	281	9	3	1	279	1	277	0.0	524
MS.gene020523.t1	MTR_4g088615	32.727	165	94	4	91	246	147	303	3.92e-15	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020523.t1	AT3G57490	92.308	221	17	0	45	265	41	261	3.14e-152	426
MS.gene020523.t1	AT2G41840	90.308	227	19	1	44	270	49	272	5.33e-151	423
MS.gene020523.t1	AT1G58684	90.222	225	22	0	45	269	49	273	3.13e-150	421
MS.gene020523.t1	AT1G58983	90.222	225	22	0	45	269	49	273	3.13e-150	421
MS.gene020523.t1	AT1G59359	90.222	225	22	0	45	269	49	273	3.13e-150	421
MS.gene020523.t1	AT1G58380	89.823	226	23	0	44	269	48	273	4.80e-150	421
MS.gene020523.t1	AT2G33800	29.530	149	97	2	91	239	147	287	3.67e-14	71.6

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Find 98 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGACGAAATTTCCA+AGG	0.536877	4.1:+1585334	None:intergenic
AACAACATGGCTGAACGTGG+TGG	0.670923	4.1:-1586002	None:intergenic
AACAATGGTCACGTTGGTCT+TGG	0.495777	4.1:-1585633	MS.gene020523:CDS
AACCCTTGGAAATTTCGTCA+AGG	0.601072	4.1:-1585337	MS.gene020523:intron
AACCTTGACGAAATTTCCAA+GGG	0.572511	4.1:+1585335	None:intergenic
AATGAAGATAGATCTGTTCA+AGG	0.480151	4.1:+1585799	None:intergenic
ACCGGGTTCTCTGACCAGCC+CGG	0.472370	4.1:+1585682	None:intergenic
ACCTTACAAGGAACAGTGTG+TGG	0.631342	4.1:+1585501	None:intergenic
ACGCGAAGAAGAAGAGAAAT+GGG	0.506516	4.1:-1585871	MS.gene020523:CDS
ACTGTTCCTTGTAAGGTTAC+TGG	0.306147	4.1:-1585495	MS.gene020523:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAGATAGATCTGTTCA+AGG	+	chr4.1:1584614-1584633	None:intergenic	30.0%
TATGGCAATACTATGATACA+TGG	-	chr4.1:1585209-1585228	MS.gene020523:intron	30.0%
TTGATTCATATTATCCCTGT+TGG	-	chr4.1:1585572-1585591	MS.gene020523:CDS	30.0%
TTTCATCAAACAGTCAAAAG+TGG	+	chr4.1:1585864-1585883	None:intergenic	30.0%
TTTGATCCTTGAAGAAGAAA+GGG	-	chr4.1:1585985-1586004	MS.gene020523:CDS	30.0%
AAACCTTGACGAAATTTCCA+AGG	+	chr4.1:1585079-1585098	None:intergenic	35.0%
AACCTTGACGAAATTTCCAA+GGG	+	chr4.1:1585078-1585097	None:intergenic	35.0%
AGATCAGTATACTCTTGGAA+TGG	+	chr4.1:1585941-1585960	None:intergenic	35.0%
ATACTCTTGGAATGGAGATT+TGG	+	chr4.1:1585933-1585952	None:intergenic	35.0%
ATGATTTGATGCTCCTTGAT+TGG	+	chr4.1:1584642-1584661	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	1584414	1586018	1584414	ID=MS.gene020523
chr4.1	mRNA	1584414	1586018	1584414	ID=MS.gene020523.t1;Parent=MS.gene020523
chr4.1	exon	1585338	1586018	1585338	ID=MS.gene020523.t1.exon1;Parent=MS.gene020523.t1
chr4.1	CDS	1585338	1586018	1585338	ID=cds.MS.gene020523.t1;Parent=MS.gene020523.t1
chr4.1	exon	1584414	1584572	1584414	ID=MS.gene020523.t1.exon2;Parent=MS.gene020523.t1
chr4.1	CDS	1584414	1584572	1584414	ID=cds.MS.gene020523.t1;Parent=MS.gene020523.t1

Gene Sequence

>MS.gene020523

ATGGCTGAACGTGGTGGAGATCGTGGTGGTTTTGGCAGTGGTTTTGGAGGTCGTGGTGGTGACAGAGGTGGTCGTGGTGGACGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCTGGAGGAAGACGCGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTAGGTCGTCTCGTGAAGGAAGGTAAGATCCGAAGCCTTGAACAGATCTATCTTCATTCTCTCCCAATCAAGGAGCATCAAATCATCGATACCCTCGTGGGTCCCACTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCCGGGCTGGTCAGAGAACCCGGTTCAAGGCTTTTGTTGTGGTTGGTGATAACAATGGTCACGTTGGTCTTGGTGTCAAGTGTAGCAAAGAAGTAGCTACTGCGATTCGTGGTGCTATTATCCTGGCTAAGCTGAGTGTGATTCCAGTGAGGAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGGGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGTATTGATGATGTTTTCACTTCCTCCCGGGGATCCACCAAAACCCTTGGAAATTTCGTCAAGGTTTTGATCTATCTCTCTAATCTATTTATACTTACTAGTTGTTTGAATTTTAATTTGGTTATGACTTCTGATTGTTTGCTAAATTGACAGAAGGAATGAATTTTTGTGTATTGTTATGGCAATACTATGATACATGGTTTCTTTATTTTAGACGGAATTATGCTGTTAGAAGTTTATTGTTGTTGGTTAATTGAAGTGTCTATTGAATTATATGCCAATTTATGTTCAACTGAAAGTGAATATGATTTTGTTACATTGTGATCATGTTCAAATTGATTGTGAGTTTGTTAAACTGTACTATTTATCTGGTTGAACAATAATTCCGTGGTCTATGAATCATCGACACAACATTGACATGAATTCATATATTGAATTGTGCCATTTTCTCATTTTAATATCATGTCTTGTTGTTTCATAGTGCGGTGGCCTATTGTTATTTTGAATAAACATAAGTCAATATCAATCCAAACTTGCATTTTGATTCATATTATCCCTGTTGGTATTGTGAATGTGAATTGATTTTAAAGAAGGACCAAACTTATGTATGTGCATTTTGTATGGTTCTTCACATAAAATTAAATTTTTGTGTAGAACCATGCAATGGACATATTCTTTGTCTCCTAAGAATTTGTCTGTTATGAATTGCAGCTTTTTTTAGTTGGCAACATTTTACTGGGTATATTACTATGACATTTCATTTACTTTTCTCACATGTAACCTTCTCTAATTTATGATTTATCTGTGCTGTGACATTTCATTTTACAGGCCACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTAACACCTGAATTCTGGAAGGAGACAAGGTTCTCCAAATCTCCATTCCAAGAGTATACTGATCTGTTGGCCAAGCCAACTGCTAAGGCTTTGATCCTTGAAGAAGAAAGGGCGGAGGCTTGA

Protein sequence

>MS.gene020523.t1

MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERAEA