Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020523.t1 | XP_003630949.1 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 6.20E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020523.t1 | Q9SCM3 | 92.3 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 1.3e-116 | 420.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020523.t1 | G7LAL7 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 4.4e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008435 | MS.gene020523 | PPI |
| MS.gene014807 | MS.gene020523 | PPI |
| MS.gene046231 | MS.gene020523 | PPI |
| MS.gene026524 | MS.gene020523 | PPI |
| MS.gene034801 | MS.gene020523 | PPI |
| MS.gene020523 | MS.gene83062 | PPI |
| MS.gene049596 | MS.gene020523 | PPI |
| MS.gene072926 | MS.gene020523 | PPI |
| MS.gene32606 | MS.gene020523 | PPI |
| MS.gene020523 | MS.gene039608 | PPI |
| MS.gene53887 | MS.gene020523 | PPI |
| MS.gene015652 | MS.gene020523 | PPI |
| MS.gene055644 | MS.gene020523 | PPI |
| MS.gene98978 | MS.gene020523 | PPI |
| MS.gene072925 | MS.gene020523 | PPI |
| MS.gene32605 | MS.gene020523 | PPI |
| MS.gene020525 | MS.gene020523 | PPI |
| MS.gene055646 | MS.gene020523 | PPI |
| MS.gene93719 | MS.gene020523 | PPI |
| MS.gene25178 | MS.gene020523 | PPI |
| MS.gene41083 | MS.gene020523 | PPI |
| MS.gene83062 | MS.gene020523 | PPI |
| MS.gene014808 | MS.gene020523 | PPI |
| MS.gene052664 | MS.gene020523 | PPI |
| MS.gene05124 | MS.gene020523 | PPI |
| MS.gene62683 | MS.gene020523 | PPI |
| MS.gene072924 | MS.gene020523 | PPI |
| MS.gene32604 | MS.gene020523 | PPI |
| MS.gene014809 | MS.gene020523 | PPI |
| MS.gene41081 | MS.gene020523 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020523.t1 | MTR_8g105340 | 99.642 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 0.0 | 559 |
| MS.gene020523.t1 | MTR_8g105340 | 96.416 | 279 | 1 | 1 | 1 | 279 | 1 | 270 | 0.0 | 535 |
| MS.gene020523.t1 | MTR_1g032450 | 94.662 | 281 | 9 | 3 | 1 | 279 | 1 | 277 | 0.0 | 524 |
| MS.gene020523.t1 | MTR_4g088615 | 32.727 | 165 | 94 | 4 | 91 | 246 | 147 | 303 | 3.92e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020523.t1 | AT3G57490 | 92.308 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 3.14e-152 | 426 |
| MS.gene020523.t1 | AT2G41840 | 90.308 | 227 | 19 | 1 | 44 | 270 | 49 | 272 | 5.33e-151 | 423 |
| MS.gene020523.t1 | AT1G58684 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020523.t1 | AT1G58983 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020523.t1 | AT1G59359 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020523.t1 | AT1G58380 | 89.823 | 226 | 23 | 0 | 44 | 269 | 48 | 273 | 4.80e-150 | 421 |
| MS.gene020523.t1 | AT2G33800 | 29.530 | 149 | 97 | 2 | 91 | 239 | 147 | 287 | 3.67e-14 | 71.6 |
Find 98 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCTCCTTCCAGAATTC+AGG | 0.269661 | 4.1:+1584508 | None:intergenic |
| TCCAGTGAGGAGAGGTTATT+GGG | 0.276824 | 4.1:-1585541 | MS.gene020523:CDS |
| CCTCCGCCCTTTCTTCTTCA+AGG | 0.277743 | 4.1:+1584419 | None:intergenic |
| GACGAAATTTCCAAGGGTTT+TGG | 0.292589 | 4.1:+1585341 | None:intergenic |
| GCAAACTGCAAAACCTTCTT+AGG | 0.306095 | 4.1:+1585402 | None:intergenic |
| ACTGTTCCTTGTAAGGTTAC+TGG | 0.306147 | 4.1:-1585495 | MS.gene020523:CDS |
| GTTCCTGCTCCTCGGGGTTC+TGG | 0.312116 | 4.1:-1585444 | MS.gene020523:CDS |
| TTCCAGTGAGGAGAGGTTAT+TGG | 0.329562 | 4.1:-1585542 | MS.gene020523:CDS |
| GGTGGAGATCGTGGTGGTTT+TGG | 0.346359 | 4.1:-1585984 | MS.gene020523:CDS |
| ATACTCTTGGAATGGAGATT+TGG | 0.351395 | 4.1:+1584480 | None:intergenic |
| TCGTATGGTTCCTGCTCCTC+GGG | 0.371220 | 4.1:-1585451 | MS.gene020523:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.377258 | 4.1:-1585427 | MS.gene020523:CDS |
| TTCGTATGGTTCCTGCTCCT+CGG | 0.380151 | 4.1:-1585452 | MS.gene020523:CDS |
| GCCCGGGTTTGTTTCTGAAC+CGG | 0.384932 | 4.1:+1585699 | None:intergenic |
| GCCACACACTGTTCCTTGTA+AGG | 0.396169 | 4.1:-1585502 | MS.gene020523:CDS |
| ATGATTTGATGCTCCTTGAT+TGG | 0.409887 | 4.1:+1585771 | None:intergenic |
| CCACAACAAAAGCCTTGAAC+CGG | 0.415813 | 4.1:+1585664 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 4.1:-1585415 | MS.gene020523:CDS |
| GACGCGAAGAAGAAGAGAAA+TGG | 0.420048 | 4.1:-1585872 | MS.gene020523:CDS |
| GATAGATCTGTTCAAGGCTT+CGG | 0.428013 | 4.1:+1585805 | None:intergenic |
| CCAACAGATCAGTATACTCT+TGG | 0.439572 | 4.1:+1584467 | None:intergenic |
| TGATTTGATGCTCCTTGATT+GGG | 0.442318 | 4.1:+1585772 | None:intergenic |
| CTTTGATCCTTGAAGAAGAA+AGG | 0.447076 | 4.1:-1584426 | MS.gene020523:CDS |
| CACTTTCCAGTAACCTTACA+AGG | 0.448418 | 4.1:+1585489 | None:intergenic |
| CGTGGTGGTCGTCGTAGAGC+TGG | 0.451382 | 4.1:-1585900 | MS.gene020523:CDS |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.452667 | 4.1:-1585428 | MS.gene020523:CDS |
| CCCGGGCTGGTCAGAGAACC+CGG | 0.453571 | 4.1:-1585683 | MS.gene020523:CDS |
| TGGTCAGAGAACCCGGTTCA+AGG | 0.464046 | 4.1:-1585676 | MS.gene020523:CDS |
| CCGGGTTCTCTGACCAGCCC+GGG | 0.469594 | 4.1:+1585683 | None:intergenic |
| ACCGGGTTCTCTGACCAGCC+CGG | 0.472370 | 4.1:+1585682 | None:intergenic |
| AATGAAGATAGATCTGTTCA+AGG | 0.480151 | 4.1:+1585799 | None:intergenic |
| ATACCAGAACCCCGAGGAGC+AGG | 0.487255 | 4.1:+1585441 | None:intergenic |
| CAAAGCCTTAGCAGTTGGCT+TGG | 0.489306 | 4.1:+1584444 | None:intergenic |
| AACAATGGTCACGTTGGTCT+TGG | 0.495777 | 4.1:-1585633 | MS.gene020523:CDS |
| CCCCAATAACCTCTCCTCAC+TGG | 0.498943 | 4.1:+1585540 | None:intergenic |
| ACGCGAAGAAGAAGAGAAAT+GGG | 0.506516 | 4.1:-1585871 | MS.gene020523:CDS |
| CGGGGATCCACCAAAACCCT+TGG | 0.507607 | 4.1:-1585351 | MS.gene020523:CDS |
| GAAGTAGCTACTGCGATTCG+TGG | 0.513941 | 4.1:-1585594 | MS.gene020523:CDS |
| TCTTCATTCTCTCCCAATCA+AGG | 0.515383 | 4.1:-1585784 | MS.gene020523:CDS |
| GACTGTTTGATGAAAACCTA+CGG | 0.523763 | 4.1:-1584541 | MS.gene020523:CDS |
| GATTCGTGGTGCTATTATCC+TGG | 0.526761 | 4.1:-1585580 | MS.gene020523:CDS |
| TGGGTTCCAGTGACCAAGCT+AGG | 0.527015 | 4.1:-1585852 | MS.gene020523:CDS |
| AGGATCAAAGCCTTAGCAGT+TGG | 0.528734 | 4.1:+1584439 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 4.1:-1585466 | MS.gene020523:CDS |
| AGAGGTGGTCGTGGTGGACG+TGG | 0.534621 | 4.1:-1585933 | MS.gene020523:CDS |
| GAATCACACTCAGCTTAGCC+AGG | 0.535828 | 4.1:+1585562 | None:intergenic |
| AAACCTTGACGAAATTTCCA+AGG | 0.536877 | 4.1:+1585334 | None:intergenic |
| TTTCATCAAACAGTCAAAAG+TGG | 0.538001 | 4.1:+1584549 | None:intergenic |
| GGTGGTGACAGAGGTGGTCG+TGG | 0.538425 | 4.1:-1585942 | MS.gene020523:CDS |
| TTTGATCCTTGAAGAAGAAA+GGG | 0.538675 | 4.1:-1584425 | MS.gene020523:CDS |
| GGACGTGGTGACAGAGGTCG+TGG | 0.539300 | 4.1:-1585918 | MS.gene020523:CDS |
| CTTCACGAGACGACCTAGCT+TGG | 0.541068 | 4.1:+1585839 | None:intergenic |
| CCAAGAGTATACTGATCTGT+TGG | 0.544918 | 4.1:-1584467 | MS.gene020523:CDS |
| AGACGACCTAGCTTGGTCAC+TGG | 0.551274 | 4.1:+1585846 | None:intergenic |
| GTTCAGAAACAAACCCGGGC+TGG | 0.552874 | 4.1:-1585696 | MS.gene020523:CDS |
| GTTGGCCAAGCCAACTGCTA+AGG | 0.561111 | 4.1:-1584449 | MS.gene020523:CDS |
| GGTTATTGGGGTAACAAGAT+CGG | 0.562624 | 4.1:-1585528 | MS.gene020523:CDS |
| CCTCGTGGGTCCCACTCTCA+AGG | 0.569047 | 4.1:-1585742 | MS.gene020523:CDS |
| AACCTTGACGAAATTTCCAA+GGG | 0.572511 | 4.1:+1585335 | None:intergenic |
| CACAACAAAAGCCTTGAACC+GGG | 0.573291 | 4.1:+1585665 | None:intergenic |
| GGGTCCCACTCTCAAGGATG+AGG | 0.575792 | 4.1:-1585736 | MS.gene020523:CDS |
| ATCACCTCATCCTTGAGAGT+GGG | 0.578711 | 4.1:+1585732 | None:intergenic |
| CATCACCTCATCCTTGAGAG+TGG | 0.579578 | 4.1:+1585731 | None:intergenic |
| TCTAACACCTGAATTCTGGA+AGG | 0.587404 | 4.1:-1584515 | MS.gene020523:CDS |
| CTGAATTCTGGAAGGAGACA+AGG | 0.587850 | 4.1:-1584507 | MS.gene020523:CDS |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.590089 | 4.1:-1585486 | MS.gene020523:CDS |
| AGATCAGTATACTCTTGGAA+TGG | 0.591366 | 4.1:+1584472 | None:intergenic |
| CTAGGTCGTCTCGTGAAGGA+AGG | 0.594091 | 4.1:-1585834 | MS.gene020523:CDS |
| TTCAGGTGTTAGAAAACCGT+AGG | 0.600291 | 4.1:+1584525 | None:intergenic |
| AACCCTTGGAAATTTCGTCA+AGG | 0.601072 | 4.1:-1585337 | MS.gene020523:intron |
| TGCCGGTTCAGAAACAAACC+CGG | 0.601185 | 4.1:-1585701 | MS.gene020523:CDS |
| GGTGGTCGTCGTAGAGCTGG+AGG | 0.613793 | 4.1:-1585897 | MS.gene020523:CDS |
| GGAGGTCGTGGTGGTGACAG+AGG | 0.615640 | 4.1:-1585951 | MS.gene020523:CDS |
| GCCGGTTCAGAAACAAACCC+GGG | 0.617531 | 4.1:-1585700 | MS.gene020523:CDS |
| GGTCGTGGTGGTGACAGAGG+TGG | 0.620463 | 4.1:-1585948 | MS.gene020523:CDS |
| CAAGCTAGGTCGTCTCGTGA+AGG | 0.627163 | 4.1:-1585838 | MS.gene020523:CDS |
| ACCTTACAAGGAACAGTGTG+TGG | 0.631342 | 4.1:+1585501 | None:intergenic |
| CGTATGGTTCCTGCTCCTCG+GGG | 0.632180 | 4.1:-1585450 | MS.gene020523:CDS |
| GGTGACAGAGGTGGTCGTGG+TGG | 0.633373 | 4.1:-1585939 | MS.gene020523:CDS |
| CCTTGAAGAAGAAAGGGCGG+AGG | 0.634716 | 4.1:-1584419 | MS.gene020523:CDS |
| TCAAATCATCGATACCCTCG+TGG | 0.638508 | 4.1:-1585757 | MS.gene020523:CDS |
| ATCAACAACATGGCTGAACG+TGG | 0.644114 | 4.1:-1586005 | None:intergenic |
| GCTGAACGTGGTGGAGATCG+TGG | 0.646255 | 4.1:-1585993 | MS.gene020523:CDS |
| TGAGGTGATGAAGATCATGC+CGG | 0.655740 | 4.1:-1585718 | MS.gene020523:CDS |
| CGTGGTGGACGTGGTGACAG+AGG | 0.656657 | 4.1:-1585924 | MS.gene020523:CDS |
| CTTGAGAGTGGGACCCACGA+GGG | 0.663874 | 4.1:+1585743 | None:intergenic |
| AGTGTGATTCCAGTGAGGAG+AGG | 0.664309 | 4.1:-1585549 | MS.gene020523:CDS |
| AACAACATGGCTGAACGTGG+TGG | 0.670923 | 4.1:-1586002 | None:intergenic |
| GATCCTTGAAGAAGAAAGGG+CGG | 0.672666 | 4.1:-1584422 | MS.gene020523:CDS |
| CCTTGAGAGTGGGACCCACG+AGG | 0.674713 | 4.1:+1585742 | None:intergenic |
| CAAATCATCGATACCCTCGT+GGG | 0.682658 | 4.1:-1585756 | MS.gene020523:CDS |
| GTTGTGGTTGGTGATAACAA+TGG | 0.690378 | 4.1:-1585648 | MS.gene020523:CDS |
| GGTGATAACAATGGTCACGT+TGG | 0.691414 | 4.1:-1585639 | MS.gene020523:CDS |
| CGTGGTGACAGAGGTCGTGG+TGG | 0.723864 | 4.1:-1585915 | MS.gene020523:CDS |
| AGCTGAGTGTGATTCCAGTG+AGG | 0.730503 | 4.1:-1585554 | MS.gene020523:CDS |
| CCAGTGAGGAGAGGTTATTG+GGG | 0.734558 | 4.1:-1585540 | MS.gene020523:CDS |
| GAACGTGGTGGAGATCGTGG+TGG | 0.744959 | 4.1:-1585990 | MS.gene020523:CDS |
| GCAACAATACCAGAACCCCG+AGG | 0.764619 | 4.1:+1585435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATTAAAATGAGAAAA+TGG | + | chr4.1:1585476-1585495 | None:intergenic | 15.0% |
| !! | TGTTTATTCAAAATAACAAT+AGG | + | chr4.1:1585524-1585543 | None:intergenic | 15.0% |
| !!! | TAGTTGTTTGAATTTTAATT+TGG | - | chr4.1:1585130-1585149 | MS.gene020523:intron | 15.0% |
| !! | GATAAATCATAAATTAGAGA+AGG | + | chr4.1:1585815-1585834 | None:intergenic | 20.0% |
| !!! | ATGTGAATTGATTTTAAAGA+AGG | - | chr4.1:1585603-1585622 | MS.gene020523:CDS | 20.0% |
| !!! | TGAATTTTTGTGTATTGTTA+TGG | - | chr4.1:1585191-1585210 | MS.gene020523:intron | 20.0% |
| ! | AAAATGCACATACATAAGTT+TGG | + | chr4.1:1585630-1585649 | None:intergenic | 25.0% |
| ! | ACTTTCAGTTGAACATAAAT+TGG | + | chr4.1:1585312-1585331 | None:intergenic | 25.0% |
| ! | GTTAAACTGTACTATTTATC+TGG | - | chr4.1:1585381-1585400 | MS.gene020523:CDS | 25.0% |
| ! | TATGAATCAAAATGCAAGTT+TGG | + | chr4.1:1585562-1585581 | None:intergenic | 25.0% |
| ! | TGTTAGAAGTTTATTGTTGT+TGG | - | chr4.1:1585258-1585277 | MS.gene020523:intron | 25.0% |
| ! | TTCATAACAGACAAATTCTT+AGG | + | chr4.1:1585717-1585736 | None:intergenic | 25.0% |
| !! | TTATGTATGTGCATTTTGTA+TGG | - | chr4.1:1585633-1585652 | MS.gene020523:CDS | 25.0% |
| !!! | CATGGTTTCTTTATTTTAGA+CGG | - | chr4.1:1585227-1585246 | MS.gene020523:intron | 25.0% |
| AATGAAGATAGATCTGTTCA+AGG | + | chr4.1:1584614-1584633 | None:intergenic | 30.0% | |
| TATGGCAATACTATGATACA+TGG | - | chr4.1:1585209-1585228 | MS.gene020523:intron | 30.0% | |
| TTGATTCATATTATCCCTGT+TGG | - | chr4.1:1585572-1585591 | MS.gene020523:CDS | 30.0% | |
| TTTCATCAAACAGTCAAAAG+TGG | + | chr4.1:1585864-1585883 | None:intergenic | 30.0% | |
| TTTGATCCTTGAAGAAGAAA+GGG | - | chr4.1:1585985-1586004 | MS.gene020523:CDS | 30.0% | |
| ! | TTAGTTGGCAACATTTTACT+GGG | - | chr4.1:1585749-1585768 | MS.gene020523:CDS | 30.0% |
| ! | TTGTTTGCTAAATTGACAGA+AGG | - | chr4.1:1585166-1585185 | MS.gene020523:intron | 30.0% |
| ! | TTTAGTTGGCAACATTTTAC+TGG | - | chr4.1:1585748-1585767 | MS.gene020523:CDS | 30.0% |
| !!! | GAATTGCAGCTTTTTTTAGT+TGG | - | chr4.1:1585734-1585753 | MS.gene020523:CDS | 30.0% |
| AAACCTTGACGAAATTTCCA+AGG | + | chr4.1:1585079-1585098 | None:intergenic | 35.0% | |
| AACCTTGACGAAATTTCCAA+GGG | + | chr4.1:1585078-1585097 | None:intergenic | 35.0% | |
| AGATCAGTATACTCTTGGAA+TGG | + | chr4.1:1585941-1585960 | None:intergenic | 35.0% | |
| ATACTCTTGGAATGGAGATT+TGG | + | chr4.1:1585933-1585952 | None:intergenic | 35.0% | |
| ATGATTTGATGCTCCTTGAT+TGG | + | chr4.1:1584642-1584661 | None:intergenic | 35.0% | |
| CAAAGAATATGTCCATTGCA+TGG | + | chr4.1:1585691-1585710 | None:intergenic | 35.0% | |
| CTTTGATCCTTGAAGAAGAA+AGG | - | chr4.1:1585984-1586003 | MS.gene020523:CDS | 35.0% | |
| GACTGTTTGATGAAAACCTA+CGG | - | chr4.1:1585869-1585888 | MS.gene020523:CDS | 35.0% | |
| TCACATTCACAATACCAACA+GGG | + | chr4.1:1585589-1585608 | None:intergenic | 35.0% | |
| TGATTTGATGCTCCTTGATT+GGG | + | chr4.1:1584641-1584660 | None:intergenic | 35.0% | |
| TTCACATTCACAATACCAAC+AGG | + | chr4.1:1585590-1585609 | None:intergenic | 35.0% | |
| ! | GCTGTGACATTTCATTTTAC+AGG | - | chr4.1:1585838-1585857 | MS.gene020523:CDS | 35.0% |
| ! | GTTTTCTAACACCTGAATTC+TGG | - | chr4.1:1585891-1585910 | MS.gene020523:CDS | 35.0% |
| ! | TTTTGTGTAGAACCATGCAA+TGG | - | chr4.1:1585676-1585695 | MS.gene020523:CDS | 35.0% |
| !! | TGTCTTGTTGTTTCATAGTG+CGG | - | chr4.1:1585495-1585514 | MS.gene020523:CDS | 35.0% |
| AACCCTTGGAAATTTCGTCA+AGG | - | chr4.1:1585073-1585092 | MS.gene020523:intron | 40.0% | |
| ACGCGAAGAAGAAGAGAAAT+GGG | - | chr4.1:1584539-1584558 | MS.gene020523:CDS | 40.0% | |
| ACTGTTCCTTGTAAGGTTAC+TGG | - | chr4.1:1584915-1584934 | MS.gene020523:intron | 40.0% | |
| CACTTTCCAGTAACCTTACA+AGG | + | chr4.1:1584924-1584943 | None:intergenic | 40.0% | |
| CCAACAGATCAGTATACTCT+TGG | + | chr4.1:1585946-1585965 | None:intergenic | 40.0% | |
| CTGGTTGAACAATAATTCCG+TGG | - | chr4.1:1585400-1585419 | MS.gene020523:CDS | 40.0% | |
| GATAGATCTGTTCAAGGCTT+CGG | + | chr4.1:1584608-1584627 | None:intergenic | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | + | chr4.1:1585011-1585030 | None:intergenic | 40.0% | |
| GGTTATTGGGGTAACAAGAT+CGG | - | chr4.1:1584882-1584901 | MS.gene020523:intron | 40.0% | |
| TCTAACACCTGAATTCTGGA+AGG | - | chr4.1:1585895-1585914 | MS.gene020523:CDS | 40.0% | |
| TCTTCATTCTCTCCCAATCA+AGG | - | chr4.1:1584626-1584645 | MS.gene020523:intron | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | - | chr4.1:1584924-1584943 | MS.gene020523:intron | 40.0% | |
| TGTCGATGATTCATAGACCA+CGG | + | chr4.1:1585420-1585439 | None:intergenic | 40.0% | |
| TTCAGGTGTTAGAAAACCGT+AGG | + | chr4.1:1585888-1585907 | None:intergenic | 40.0% | |
| TTCTGGTATTGTTGCTGCTA+GGG | - | chr4.1:1584983-1585002 | MS.gene020523:intron | 40.0% | |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | - | chr4.1:1585011-1585030 | MS.gene020523:intron | 40.0% |
| ! | ATGATGTTTTCACTTCCTCC+CGG | - | chr4.1:1585039-1585058 | MS.gene020523:intron | 40.0% |
| ! | CCAAGAGTATACTGATCTGT+TGG | - | chr4.1:1585943-1585962 | MS.gene020523:CDS | 40.0% |
| ! | GACGAAATTTCCAAGGGTTT+TGG | + | chr4.1:1585072-1585091 | None:intergenic | 40.0% |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | - | chr4.1:1584944-1584963 | MS.gene020523:intron | 40.0% |
| !! | GAAATTTCCAAGGGTTTTGG+TGG | + | chr4.1:1585069-1585088 | None:intergenic | 40.0% |
| !! | GTTGTGGTTGGTGATAACAA+TGG | - | chr4.1:1584762-1584781 | MS.gene020523:intron | 40.0% |
| !! | TTCAAGGCTTTTGTTGTGGT+TGG | - | chr4.1:1584750-1584769 | MS.gene020523:intron | 40.0% |
| ACCTTACAAGGAACAGTGTG+TGG | + | chr4.1:1584912-1584931 | None:intergenic | 45.0% | |
| AGGATCAAAGCCTTAGCAGT+TGG | + | chr4.1:1585974-1585993 | None:intergenic | 45.0% | |
| ATCACCTCATCCTTGAGAGT+GGG | + | chr4.1:1584681-1584700 | None:intergenic | 45.0% | |
| CAAATCATCGATACCCTCGT+GGG | - | chr4.1:1584654-1584673 | MS.gene020523:intron | 45.0% | |
| CACAACAAAAGCCTTGAACC+GGG | + | chr4.1:1584748-1584767 | None:intergenic | 45.0% | |
| CCACAACAAAAGCCTTGAAC+CGG | + | chr4.1:1584749-1584768 | None:intergenic | 45.0% | |
| CTTGTCTCCTTCCAGAATTC+AGG | + | chr4.1:1585905-1585924 | None:intergenic | 45.0% | |
| GACGCGAAGAAGAAGAGAAA+TGG | - | chr4.1:1584538-1584557 | MS.gene020523:CDS | 45.0% | |
| GATCCTTGAAGAAGAAAGGG+CGG | - | chr4.1:1585988-1586007 | MS.gene020523:CDS | 45.0% | |
| GGTGATAACAATGGTCACGT+TGG | - | chr4.1:1584771-1584790 | MS.gene020523:intron | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | - | chr4.1:1584982-1585001 | MS.gene020523:intron | 45.0% | |
| TCAAATCATCGATACCCTCG+TGG | - | chr4.1:1584653-1584672 | MS.gene020523:intron | 45.0% | |
| TCCAGTGAGGAGAGGTTATT+GGG | - | chr4.1:1584869-1584888 | MS.gene020523:intron | 45.0% | |
| TGAGGTGATGAAGATCATGC+CGG | - | chr4.1:1584692-1584711 | MS.gene020523:intron | 45.0% | |
| TTCCAGTGAGGAGAGGTTAT+TGG | - | chr4.1:1584868-1584887 | MS.gene020523:intron | 45.0% | |
| ! | AACAATGGTCACGTTGGTCT+TGG | - | chr4.1:1584777-1584796 | MS.gene020523:intron | 45.0% |
| ! | CTGAATTCTGGAAGGAGACA+AGG | - | chr4.1:1585903-1585922 | MS.gene020523:CDS | 45.0% |
| ! | TGATGTTTTCACTTCCTCCC+GGG | - | chr4.1:1585040-1585059 | MS.gene020523:intron | 45.0% |
| !! | CTTGTTGTTTCATAGTGCGG+TGG | - | chr4.1:1585498-1585517 | MS.gene020523:CDS | 45.0% |
| !! | GATTCGTGGTGCTATTATCC+TGG | - | chr4.1:1584830-1584849 | MS.gene020523:intron | 45.0% |
| AGCTGAGTGTGATTCCAGTG+AGG | - | chr4.1:1584856-1584875 | MS.gene020523:intron | 50.0% | |
| AGTGTGATTCCAGTGAGGAG+AGG | - | chr4.1:1584861-1584880 | MS.gene020523:intron | 50.0% | |
| CAAAGCCTTAGCAGTTGGCT+TGG | + | chr4.1:1585969-1585988 | None:intergenic | 50.0% | |
| CATCACCTCATCCTTGAGAG+TGG | + | chr4.1:1584682-1584701 | None:intergenic | 50.0% | |
| CCAGTGAGGAGAGGTTATTG+GGG | - | chr4.1:1584870-1584889 | MS.gene020523:intron | 50.0% | |
| GAAGTAGCTACTGCGATTCG+TGG | - | chr4.1:1584816-1584835 | MS.gene020523:intron | 50.0% | |
| GAATCACACTCAGCTTAGCC+AGG | + | chr4.1:1584851-1584870 | None:intergenic | 50.0% | |
| GCCACACACTGTTCCTTGTA+AGG | - | chr4.1:1584908-1584927 | MS.gene020523:intron | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | - | chr4.1:1584995-1585014 | MS.gene020523:intron | 50.0% | |
| TTCGTATGGTTCCTGCTCCT+CGG | - | chr4.1:1584958-1584977 | MS.gene020523:intron | 50.0% | |
| ! | CCGGTTCAAGGCTTTTGTTG+TGG | - | chr4.1:1584746-1584765 | MS.gene020523:intron | 50.0% |
| ! | GATGTTTTCACTTCCTCCCG+GGG | - | chr4.1:1585041-1585060 | MS.gene020523:intron | 50.0% |
| !! | TGCCGGTTCAGAAACAAACC+CGG | - | chr4.1:1584709-1584728 | MS.gene020523:intron | 50.0% |
| !!! | GGTGGTTTTGGCAGTGGTTT+TGG | - | chr4.1:1584438-1584457 | MS.gene020523:CDS | 50.0% |
| !!! | GGTTTTGGCAGTGGTTTTGG+AGG | - | chr4.1:1584441-1584460 | MS.gene020523:CDS | 50.0% |
| AGACGACCTAGCTTGGTCAC+TGG | + | chr4.1:1584567-1584586 | None:intergenic | 55.0% | |
| CAAGCTAGGTCGTCTCGTGA+AGG | - | chr4.1:1584572-1584591 | MS.gene020523:intron | 55.0% | |
| CCCCAATAACCTCTCCTCAC+TGG | + | chr4.1:1584873-1584892 | None:intergenic | 55.0% | |
| CCTCCGCCCTTTCTTCTTCA+AGG | + | chr4.1:1585994-1586013 | None:intergenic | 55.0% | |
| CCTTGAAGAAGAAAGGGCGG+AGG | - | chr4.1:1585991-1586010 | MS.gene020523:CDS | 55.0% | |
| CTAGGTCGTCTCGTGAAGGA+AGG | - | chr4.1:1584576-1584595 | MS.gene020523:intron | 55.0% | |
| CTTCACGAGACGACCTAGCT+TGG | + | chr4.1:1584574-1584593 | None:intergenic | 55.0% | |
| GCAACAATACCAGAACCCCG+AGG | + | chr4.1:1584978-1584997 | None:intergenic | 55.0% | |
| GTTCAGAAACAAACCCGGGC+TGG | - | chr4.1:1584714-1584733 | MS.gene020523:intron | 55.0% | |
| GTTGGCCAAGCCAACTGCTA+AGG | - | chr4.1:1585961-1585980 | MS.gene020523:CDS | 55.0% | |
| TCGTATGGTTCCTGCTCCTC+GGG | - | chr4.1:1584959-1584978 | MS.gene020523:intron | 55.0% | |
| TGGGTTCCAGTGACCAAGCT+AGG | - | chr4.1:1584558-1584577 | MS.gene020523:intron | 55.0% | |
| TGGTCAGAGAACCCGGTTCA+AGG | - | chr4.1:1584734-1584753 | MS.gene020523:intron | 55.0% | |
| ! | GCCGGTTCAGAAACAAACCC+GGG | - | chr4.1:1584710-1584729 | MS.gene020523:intron | 55.0% |
| ! | GGTGGAGATCGTGGTGGTTT+TGG | - | chr4.1:1584426-1584445 | MS.gene020523:CDS | 55.0% |
| !! | AAGGGTTTTGGTGGATCCCC+GGG | + | chr4.1:1585060-1585079 | None:intergenic | 55.0% |
| !! | CAAGGGTTTTGGTGGATCCC+CGG | + | chr4.1:1585061-1585080 | None:intergenic | 55.0% |
| !! | GCCCGGGTTTGTTTCTGAAC+CGG | + | chr4.1:1584714-1584733 | None:intergenic | 55.0% |
| !!! | AGTGGTTTTGGAGGTCGTGG+TGG | - | chr4.1:1584450-1584469 | MS.gene020523:CDS | 55.0% |
| !!! | GATCGTGGTGGTTTTGGCAG+TGG | - | chr4.1:1584432-1584451 | MS.gene020523:CDS | 55.0% |
| ATACCAGAACCCCGAGGAGC+AGG | + | chr4.1:1584972-1584991 | None:intergenic | 60.0% | |
| CGGGGATCCACCAAAACCCT+TGG | - | chr4.1:1585059-1585078 | MS.gene020523:intron | 60.0% | |
| CGTATGGTTCCTGCTCCTCG+GGG | - | chr4.1:1584960-1584979 | MS.gene020523:intron | 60.0% | |
| CTTGAGAGTGGGACCCACGA+GGG | + | chr4.1:1584670-1584689 | None:intergenic | 60.0% | |
| GGGTCCCACTCTCAAGGATG+AGG | - | chr4.1:1584674-1584693 | MS.gene020523:intron | 60.0% | |
| ! | GAACGTGGTGGAGATCGTGG+TGG | - | chr4.1:1584420-1584439 | MS.gene020523:CDS | 60.0% |
| ! | GCTGAACGTGGTGGAGATCG+TGG | - | chr4.1:1584417-1584436 | MS.gene020523:CDS | 60.0% |
| !!! | GGCAGTGGTTTTGGAGGTCG+TGG | - | chr4.1:1584447-1584466 | MS.gene020523:CDS | 60.0% |
| ACCGGGTTCTCTGACCAGCC+CGG | + | chr4.1:1584731-1584750 | None:intergenic | 65.0% | |
| CCTCGTGGGTCCCACTCTCA+AGG | - | chr4.1:1584668-1584687 | MS.gene020523:intron | 65.0% | |
| CCTTGAGAGTGGGACCCACG+AGG | + | chr4.1:1584671-1584690 | None:intergenic | 65.0% | |
| CGTGGTGACAGAGGTCGTGG+TGG | - | chr4.1:1584495-1584514 | MS.gene020523:CDS | 65.0% | |
| CGTGGTGGTCGTCGTAGAGC+TGG | - | chr4.1:1584510-1584529 | MS.gene020523:CDS | 65.0% | |
| GGACGTGGTGACAGAGGTCG+TGG | - | chr4.1:1584492-1584511 | MS.gene020523:CDS | 65.0% | |
| GGTGACAGAGGTGGTCGTGG+TGG | - | chr4.1:1584471-1584490 | MS.gene020523:CDS | 65.0% | |
| GGTGGTCGTCGTAGAGCTGG+AGG | - | chr4.1:1584513-1584532 | MS.gene020523:CDS | 65.0% | |
| GGTGGTGACAGAGGTGGTCG+TGG | - | chr4.1:1584468-1584487 | MS.gene020523:CDS | 65.0% | |
| GTTCCTGCTCCTCGGGGTTC+TGG | - | chr4.1:1584966-1584985 | MS.gene020523:intron | 65.0% | |
| ! | GGAGGTCGTGGTGGTGACAG+AGG | - | chr4.1:1584459-1584478 | MS.gene020523:CDS | 65.0% |
| ! | GGTCGTGGTGGTGACAGAGG+TGG | - | chr4.1:1584462-1584481 | MS.gene020523:CDS | 65.0% |
| !! | AGAGGTGGTCGTGGTGGACG+TGG | - | chr4.1:1584477-1584496 | MS.gene020523:CDS | 65.0% |
| !! | CGTGGTGGACGTGGTGACAG+AGG | - | chr4.1:1584486-1584505 | MS.gene020523:CDS | 65.0% |
| !! | GGTTTTGGTGGATCCCCGGG+AGG | + | chr4.1:1585057-1585076 | None:intergenic | 65.0% |
| CCGGGTTCTCTGACCAGCCC+GGG | + | chr4.1:1584730-1584749 | None:intergenic | 70.0% | |
| !! | CCCGGGCTGGTCAGAGAACC+CGG | - | chr4.1:1584727-1584746 | MS.gene020523:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1584414 | 1586018 | 1584414 | ID=MS.gene020523 |
| chr4.1 | mRNA | 1584414 | 1586018 | 1584414 | ID=MS.gene020523.t1;Parent=MS.gene020523 |
| chr4.1 | exon | 1585338 | 1586018 | 1585338 | ID=MS.gene020523.t1.exon1;Parent=MS.gene020523.t1 |
| chr4.1 | CDS | 1585338 | 1586018 | 1585338 | ID=cds.MS.gene020523.t1;Parent=MS.gene020523.t1 |
| chr4.1 | exon | 1584414 | 1584572 | 1584414 | ID=MS.gene020523.t1.exon2;Parent=MS.gene020523.t1 |
| chr4.1 | CDS | 1584414 | 1584572 | 1584414 | ID=cds.MS.gene020523.t1;Parent=MS.gene020523.t1 |
| Gene Sequence |
| Protein sequence |
