AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015652.t1 MTR_8g105340 99.642 279 1 0 1 279 1 279 0.0 559
MS.gene015652.t1 MTR_8g105340 96.416 279 1 1 1 279 1 270 0.0 535
MS.gene015652.t1 MTR_1g032450 94.662 281 9 3 1 279 1 277 0.0 524
MS.gene015652.t1 MTR_4g088615 32.727 165 94 4 91 246 147 303 3.92e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015652.t1 AT3G57490 92.308 221 17 0 45 265 41 261 3.14e-152 426
MS.gene015652.t1 AT2G41840 90.308 227 19 1 44 270 49 272 5.33e-151 423
MS.gene015652.t1 AT1G58684 90.222 225 22 0 45 269 49 273 3.13e-150 421
MS.gene015652.t1 AT1G58983 90.222 225 22 0 45 269 49 273 3.13e-150 421
MS.gene015652.t1 AT1G59359 90.222 225 22 0 45 269 49 273 3.13e-150 421
MS.gene015652.t1 AT1G58380 89.823 226 23 0 44 269 48 273 4.80e-150 421
MS.gene015652.t1 AT2G33800 29.530 149 97 2 91 239 147 287 3.67e-14 71.6

Find 98 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCTCCTTCCAGAATTC+AGG 0.269661 4.4:+2051603 None:intergenic
TCCAGTGAGGAGAGGTTATT+GGG 0.276824 4.4:-2052636 MS.gene015652:CDS
CCTCCGCCCTTTCTTCTTCA+AGG 0.277743 4.4:+2051514 None:intergenic
GACGAAATTTCCAAGGGTTT+TGG 0.292589 4.4:+2052436 None:intergenic
GCAAACTGCAAAACCTTCTT+AGG 0.306095 4.4:+2052497 None:intergenic
ACTGTTCCTTGTAAGGTTAC+TGG 0.306147 4.4:-2052590 MS.gene015652:CDS
GTTCCTGCTCCTCGGGGTTC+TGG 0.312116 4.4:-2052539 MS.gene015652:CDS
TTCCAGTGAGGAGAGGTTAT+TGG 0.329562 4.4:-2052637 MS.gene015652:CDS
GGTGGAGATCGTGGTGGTTT+TGG 0.346359 4.4:-2053079 MS.gene015652:CDS
ATACTCTTGGAATGGAGATT+TGG 0.351395 4.4:+2051575 None:intergenic
TCGTATGGTTCCTGCTCCTC+GGG 0.371220 4.4:-2052546 MS.gene015652:CDS
TTCTGGTATTGTTGCTGCTA+GGG 0.377258 4.4:-2052522 MS.gene015652:CDS
TTCGTATGGTTCCTGCTCCT+CGG 0.380151 4.4:-2052547 MS.gene015652:CDS
GCCCGGGTTTGTTTCTGAAC+CGG 0.384932 4.4:+2052794 None:intergenic
GCCACACACTGTTCCTTGTA+AGG 0.396169 4.4:-2052597 MS.gene015652:CDS
ATGATTTGATGCTCCTTGAT+TGG 0.409887 4.4:+2052866 None:intergenic
CCACAACAAAAGCCTTGAAC+CGG 0.415813 4.4:+2052759 None:intergenic
TGCTGCTAGGGTTCCTAAGA+AGG 0.419749 4.4:-2052510 MS.gene015652:CDS
GACGCGAAGAAGAAGAGAAA+TGG 0.420048 4.4:-2052967 MS.gene015652:CDS
GATAGATCTGTTCAAGGCTT+CGG 0.428013 4.4:+2052900 None:intergenic
CCAACAGATCAGTATACTCT+TGG 0.439572 4.4:+2051562 None:intergenic
TGATTTGATGCTCCTTGATT+GGG 0.442318 4.4:+2052867 None:intergenic
CTTTGATCCTTGAAGAAGAA+AGG 0.447076 4.4:-2051521 MS.gene015652:CDS
CACTTTCCAGTAACCTTACA+AGG 0.448418 4.4:+2052584 None:intergenic
CGTGGTGGTCGTCGTAGAGC+TGG 0.451382 4.4:-2052995 MS.gene015652:CDS
GTTCTGGTATTGTTGCTGCT+AGG 0.452667 4.4:-2052523 MS.gene015652:CDS
CCCGGGCTGGTCAGAGAACC+CGG 0.453571 4.4:-2052778 MS.gene015652:CDS
TGGTCAGAGAACCCGGTTCA+AGG 0.464046 4.4:-2052771 MS.gene015652:CDS
CCGGGTTCTCTGACCAGCCC+GGG 0.469594 4.4:+2052778 None:intergenic
ACCGGGTTCTCTGACCAGCC+CGG 0.472370 4.4:+2052777 None:intergenic
AATGAAGATAGATCTGTTCA+AGG 0.480151 4.4:+2052894 None:intergenic
ATACCAGAACCCCGAGGAGC+AGG 0.487255 4.4:+2052536 None:intergenic
CAAAGCCTTAGCAGTTGGCT+TGG 0.489306 4.4:+2051539 None:intergenic
AACAATGGTCACGTTGGTCT+TGG 0.495777 4.4:-2052728 MS.gene015652:CDS
CCCCAATAACCTCTCCTCAC+TGG 0.498943 4.4:+2052635 None:intergenic
ACGCGAAGAAGAAGAGAAAT+GGG 0.506516 4.4:-2052966 MS.gene015652:CDS
CGGGGATCCACCAAAACCCT+TGG 0.507607 4.4:-2052446 MS.gene015652:CDS
GAAGTAGCTACTGCGATTCG+TGG 0.513941 4.4:-2052689 MS.gene015652:CDS
TCTTCATTCTCTCCCAATCA+AGG 0.515383 4.4:-2052879 MS.gene015652:CDS
GACTGTTTGATGAAAACCTA+CGG 0.523763 4.4:-2051636 MS.gene015652:CDS
GATTCGTGGTGCTATTATCC+TGG 0.526761 4.4:-2052675 MS.gene015652:CDS
TGGGTTCCAGTGACCAAGCT+AGG 0.527015 4.4:-2052947 MS.gene015652:CDS
AGGATCAAAGCCTTAGCAGT+TGG 0.528734 4.4:+2051534 None:intergenic
TGGTTCTGTTACTGTTCGTA+TGG 0.533362 4.4:-2052561 MS.gene015652:CDS
AGAGGTGGTCGTGGTGGACG+TGG 0.534621 4.4:-2053028 MS.gene015652:CDS
GAATCACACTCAGCTTAGCC+AGG 0.535828 4.4:+2052657 None:intergenic
AAACCTTGACGAAATTTCCA+AGG 0.536877 4.4:+2052429 None:intergenic
TTTCATCAAACAGTCAAAAG+TGG 0.538001 4.4:+2051644 None:intergenic
GGTGGTGACAGAGGTGGTCG+TGG 0.538425 4.4:-2053037 MS.gene015652:CDS
TTTGATCCTTGAAGAAGAAA+GGG 0.538675 4.4:-2051520 MS.gene015652:CDS
GGACGTGGTGACAGAGGTCG+TGG 0.539300 4.4:-2053013 MS.gene015652:CDS
CTTCACGAGACGACCTAGCT+TGG 0.541068 4.4:+2052934 None:intergenic
CCAAGAGTATACTGATCTGT+TGG 0.544918 4.4:-2051562 MS.gene015652:CDS
AGACGACCTAGCTTGGTCAC+TGG 0.551274 4.4:+2052941 None:intergenic
GTTCAGAAACAAACCCGGGC+TGG 0.552874 4.4:-2052791 MS.gene015652:CDS
GTTGGCCAAGCCAACTGCTA+AGG 0.561111 4.4:-2051544 MS.gene015652:CDS
GGTTATTGGGGTAACAAGAT+CGG 0.562624 4.4:-2052623 MS.gene015652:CDS
CCTCGTGGGTCCCACTCTCA+AGG 0.569047 4.4:-2052837 MS.gene015652:CDS
AACCTTGACGAAATTTCCAA+GGG 0.572511 4.4:+2052430 None:intergenic
CACAACAAAAGCCTTGAACC+GGG 0.573291 4.4:+2052760 None:intergenic
GGGTCCCACTCTCAAGGATG+AGG 0.575792 4.4:-2052831 MS.gene015652:CDS
ATCACCTCATCCTTGAGAGT+GGG 0.578711 4.4:+2052827 None:intergenic
CATCACCTCATCCTTGAGAG+TGG 0.579578 4.4:+2052826 None:intergenic
TCTAACACCTGAATTCTGGA+AGG 0.587404 4.4:-2051610 MS.gene015652:CDS
CTGAATTCTGGAAGGAGACA+AGG 0.587850 4.4:-2051602 MS.gene015652:CDS
TGTAAGGTTACTGGAAAGTG+TGG 0.590089 4.4:-2052581 MS.gene015652:CDS
AGATCAGTATACTCTTGGAA+TGG 0.591366 4.4:+2051567 None:intergenic
CTAGGTCGTCTCGTGAAGGA+AGG 0.594091 4.4:-2052929 MS.gene015652:CDS
TTCAGGTGTTAGAAAACCGT+AGG 0.600291 4.4:+2051620 None:intergenic
AACCCTTGGAAATTTCGTCA+AGG 0.601072 4.4:-2052432 MS.gene015652:intron
TGCCGGTTCAGAAACAAACC+CGG 0.601185 4.4:-2052796 MS.gene015652:CDS
GGTGGTCGTCGTAGAGCTGG+AGG 0.613793 4.4:-2052992 MS.gene015652:CDS
GGAGGTCGTGGTGGTGACAG+AGG 0.615640 4.4:-2053046 MS.gene015652:CDS
GCCGGTTCAGAAACAAACCC+GGG 0.617531 4.4:-2052795 MS.gene015652:CDS
GGTCGTGGTGGTGACAGAGG+TGG 0.620463 4.4:-2053043 MS.gene015652:CDS
CAAGCTAGGTCGTCTCGTGA+AGG 0.627163 4.4:-2052933 MS.gene015652:CDS
ACCTTACAAGGAACAGTGTG+TGG 0.631342 4.4:+2052596 None:intergenic
CGTATGGTTCCTGCTCCTCG+GGG 0.632180 4.4:-2052545 MS.gene015652:CDS
GGTGACAGAGGTGGTCGTGG+TGG 0.633373 4.4:-2053034 MS.gene015652:CDS
CCTTGAAGAAGAAAGGGCGG+AGG 0.634716 4.4:-2051514 MS.gene015652:CDS
TCAAATCATCGATACCCTCG+TGG 0.638508 4.4:-2052852 MS.gene015652:CDS
ATCAACAACATGGCTGAACG+TGG 0.644114 4.4:-2053100 None:intergenic
GCTGAACGTGGTGGAGATCG+TGG 0.646255 4.4:-2053088 MS.gene015652:CDS
TGAGGTGATGAAGATCATGC+CGG 0.655740 4.4:-2052813 MS.gene015652:CDS
CGTGGTGGACGTGGTGACAG+AGG 0.656657 4.4:-2053019 MS.gene015652:CDS
CTTGAGAGTGGGACCCACGA+GGG 0.663874 4.4:+2052838 None:intergenic
AGTGTGATTCCAGTGAGGAG+AGG 0.664309 4.4:-2052644 MS.gene015652:CDS
AACAACATGGCTGAACGTGG+TGG 0.670923 4.4:-2053097 None:intergenic
GATCCTTGAAGAAGAAAGGG+CGG 0.672666 4.4:-2051517 MS.gene015652:CDS
CCTTGAGAGTGGGACCCACG+AGG 0.674713 4.4:+2052837 None:intergenic
CAAATCATCGATACCCTCGT+GGG 0.682658 4.4:-2052851 MS.gene015652:CDS
GTTGTGGTTGGTGATAACAA+TGG 0.690378 4.4:-2052743 MS.gene015652:CDS
GGTGATAACAATGGTCACGT+TGG 0.691414 4.4:-2052734 MS.gene015652:CDS
CGTGGTGACAGAGGTCGTGG+TGG 0.723864 4.4:-2053010 MS.gene015652:CDS
AGCTGAGTGTGATTCCAGTG+AGG 0.730503 4.4:-2052649 MS.gene015652:CDS
CCAGTGAGGAGAGGTTATTG+GGG 0.734558 4.4:-2052635 MS.gene015652:CDS
GAACGTGGTGGAGATCGTGG+TGG 0.744959 4.4:-2053085 MS.gene015652:CDS
GCAACAATACCAGAACCCCG+AGG 0.764619 4.4:+2052530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATTAAAATGAGAAAA+TGG + chr4.4:2052571-2052590 None:intergenic 15.0%
!! TGTTTATTCAAAATAACAAT+AGG + chr4.4:2052619-2052638 None:intergenic 15.0%
!!! TAGTTGTTTGAATTTTAATT+TGG - chr4.4:2052225-2052244 MS.gene015652:intron 15.0%
!! GATAAATCATAAATTAGAGA+AGG + chr4.4:2052910-2052929 None:intergenic 20.0%
!!! ATGTGAATTGATTTTAAAGA+AGG - chr4.4:2052698-2052717 MS.gene015652:CDS 20.0%
! AAAATGCACATACATAAGTT+TGG + chr4.4:2052725-2052744 None:intergenic 25.0%
! ACTTTCAGTTGAACATAAAT+TGG + chr4.4:2052407-2052426 None:intergenic 25.0%
! GTTAAACTGTACTATTTATC+TGG - chr4.4:2052476-2052495 MS.gene015652:CDS 25.0%
! TATGAATCAAAATGCAAGTT+TGG + chr4.4:2052657-2052676 None:intergenic 25.0%
! TGTTAGAAGTTTATTGTTGT+TGG - chr4.4:2052353-2052372 MS.gene015652:intron 25.0%
! TTCATAACAGACAAATTCTT+AGG + chr4.4:2052812-2052831 None:intergenic 25.0%
!! TGAACTTTTGTGTATTGTTA+TGG - chr4.4:2052286-2052305 MS.gene015652:intron 25.0%
!! TTATGTATGTGCATTTTGTA+TGG - chr4.4:2052728-2052747 MS.gene015652:CDS 25.0%
!!! CATGGTTTCTTTATTTTAGA+CGG - chr4.4:2052322-2052341 MS.gene015652:intron 25.0%
!!! GAATTGCAGTTTTTTTTAGT+TGG - chr4.4:2052829-2052848 MS.gene015652:CDS 25.0%
AATGAAGATAGATCTGTTCA+AGG + chr4.4:2051709-2051728 None:intergenic 30.0%
TATGGCAATACTATGATACA+TGG - chr4.4:2052304-2052323 MS.gene015652:intron 30.0%
TTGATTCATATTATCCCTGT+TGG - chr4.4:2052667-2052686 MS.gene015652:CDS 30.0%
TTTCATCAAACAGTCAAAAG+TGG + chr4.4:2052959-2052978 None:intergenic 30.0%
TTTGATCCTTGAAGAAGAAA+GGG - chr4.4:2053080-2053099 MS.gene015652:CDS 30.0%
! TTGTTTGCTAAATTGACAGA+AGG - chr4.4:2052261-2052280 MS.gene015652:intron 30.0%
AAACCTTGACGAAATTTCCA+AGG + chr4.4:2052174-2052193 None:intergenic 35.0%
AACCTTGACGAAATTTCCAA+GGG + chr4.4:2052173-2052192 None:intergenic 35.0%
AGATCAGTATACTCTTGGAA+TGG + chr4.4:2053036-2053055 None:intergenic 35.0%
ATACTCTTGGAATGGAGATT+TGG + chr4.4:2053028-2053047 None:intergenic 35.0%
ATGATTTGATGCTCCTTGAT+TGG + chr4.4:2051737-2051756 None:intergenic 35.0%
CAAAGAATATGTCCATTGCA+TGG + chr4.4:2052786-2052805 None:intergenic 35.0%
CTTTGATCCTTGAAGAAGAA+AGG - chr4.4:2053079-2053098 MS.gene015652:CDS 35.0%
GACTGTTTGATGAAAACCTA+CGG - chr4.4:2052964-2052983 MS.gene015652:CDS 35.0%
TCACATTCACAATACCAACA+GGG + chr4.4:2052684-2052703 None:intergenic 35.0%
TGATTTGATGCTCCTTGATT+GGG + chr4.4:2051736-2051755 None:intergenic 35.0%
TTAGTTGGCAACATTTGACT+GGG - chr4.4:2052844-2052863 MS.gene015652:CDS 35.0%
TTCACATTCACAATACCAAC+AGG + chr4.4:2052685-2052704 None:intergenic 35.0%
TTTAGTTGGCAACATTTGAC+TGG - chr4.4:2052843-2052862 MS.gene015652:CDS 35.0%
! GCTGTGACATTTCATTTTAC+AGG - chr4.4:2052933-2052952 MS.gene015652:CDS 35.0%
! GTTTTCTAACACCTGAATTC+TGG - chr4.4:2052986-2053005 MS.gene015652:CDS 35.0%
! TTTTGTGTAGAACCATGCAA+TGG - chr4.4:2052771-2052790 MS.gene015652:CDS 35.0%
!! TGTCTTGTTGTTTCATAGTG+CGG - chr4.4:2052590-2052609 MS.gene015652:CDS 35.0%
AACCCTTGGAAATTTCGTCA+AGG - chr4.4:2052168-2052187 MS.gene015652:intron 40.0%
ACGCGAAGAAGAAGAGAAAT+GGG - chr4.4:2051634-2051653 MS.gene015652:CDS 40.0%
ACTGTTCCTTGTAAGGTTAC+TGG - chr4.4:2052010-2052029 MS.gene015652:intron 40.0%
CACTTTCCAGTAACCTTACA+AGG + chr4.4:2052019-2052038 None:intergenic 40.0%
CCAACAGATCAGTATACTCT+TGG + chr4.4:2053041-2053060 None:intergenic 40.0%
CTGGTTGAACAATAATTCCG+TGG - chr4.4:2052495-2052514 MS.gene015652:CDS 40.0%
GATAGATCTGTTCAAGGCTT+CGG + chr4.4:2051703-2051722 None:intergenic 40.0%
GCAAACTGCAAAACCTTCTT+AGG + chr4.4:2052106-2052125 None:intergenic 40.0%
GGTTATTGGGGTAACAAGAT+CGG - chr4.4:2051977-2051996 MS.gene015652:intron 40.0%
TCTAACACCTGAATTCTGGA+AGG - chr4.4:2052990-2053009 MS.gene015652:CDS 40.0%
TCTTCATTCTCTCCCAATCA+AGG - chr4.4:2051721-2051740 MS.gene015652:intron 40.0%
TGTAAGGTTACTGGAAAGTG+TGG - chr4.4:2052019-2052038 MS.gene015652:intron 40.0%
TGTCGATGATTCATAGACCA+CGG + chr4.4:2052515-2052534 None:intergenic 40.0%
TTCAGGTGTTAGAAAACCGT+AGG + chr4.4:2052983-2053002 None:intergenic 40.0%
TTCTGGTATTGTTGCTGCTA+GGG - chr4.4:2052078-2052097 MS.gene015652:intron 40.0%
! AAGAAGGTTTTGCAGTTTGC+TGG - chr4.4:2052106-2052125 MS.gene015652:intron 40.0%
! ATGATGTTTTCACTTCCTCC+CGG - chr4.4:2052134-2052153 MS.gene015652:intron 40.0%
! CCAAGAGTATACTGATCTGT+TGG - chr4.4:2053038-2053057 MS.gene015652:CDS 40.0%
! GACGAAATTTCCAAGGGTTT+TGG + chr4.4:2052167-2052186 None:intergenic 40.0%
! TGGTTCTGTTACTGTTCGTA+TGG - chr4.4:2052039-2052058 MS.gene015652:intron 40.0%
!! GAAATTTCCAAGGGTTTTGG+TGG + chr4.4:2052164-2052183 None:intergenic 40.0%
!! GTTGTGGTTGGTGATAACAA+TGG - chr4.4:2051857-2051876 MS.gene015652:intron 40.0%
!! TTCAAGGCTTTTGTTGTGGT+TGG - chr4.4:2051845-2051864 MS.gene015652:intron 40.0%
ACCTTACAAGGAACAGTGTG+TGG + chr4.4:2052007-2052026 None:intergenic 45.0%
AGGATCAAAGCCTTAGCAGT+TGG + chr4.4:2053069-2053088 None:intergenic 45.0%
ATCACCTCATCCTTGAGAGT+GGG + chr4.4:2051776-2051795 None:intergenic 45.0%
CAAATCATCGATACCCTCGT+GGG - chr4.4:2051749-2051768 MS.gene015652:intron 45.0%
CACAACAAAAGCCTTGAACC+GGG + chr4.4:2051843-2051862 None:intergenic 45.0%
CCACAACAAAAGCCTTGAAC+CGG + chr4.4:2051844-2051863 None:intergenic 45.0%
CTTGTCTCCTTCCAGAATTC+AGG + chr4.4:2053000-2053019 None:intergenic 45.0%
GACGCGAAGAAGAAGAGAAA+TGG - chr4.4:2051633-2051652 MS.gene015652:CDS 45.0%
GATCCTTGAAGAAGAAAGGG+CGG - chr4.4:2053083-2053102 MS.gene015652:CDS 45.0%
GGTGATAACAATGGTCACGT+TGG - chr4.4:2051866-2051885 MS.gene015652:intron 45.0%
GTTCTGGTATTGTTGCTGCT+AGG - chr4.4:2052077-2052096 MS.gene015652:intron 45.0%
TCAAATCATCGATACCCTCG+TGG - chr4.4:2051748-2051767 MS.gene015652:intron 45.0%
TCCAGTGAGGAGAGGTTATT+GGG - chr4.4:2051964-2051983 MS.gene015652:intron 45.0%
TGAGGTGATGAAGATCATGC+CGG - chr4.4:2051787-2051806 MS.gene015652:intron 45.0%
TTCCAGTGAGGAGAGGTTAT+TGG - chr4.4:2051963-2051982 MS.gene015652:intron 45.0%
! AACAATGGTCACGTTGGTCT+TGG - chr4.4:2051872-2051891 MS.gene015652:intron 45.0%
! CTGAATTCTGGAAGGAGACA+AGG - chr4.4:2052998-2053017 MS.gene015652:CDS 45.0%
! TGATGTTTTCACTTCCTCCC+GGG - chr4.4:2052135-2052154 MS.gene015652:intron 45.0%
!! CTTGTTGTTTCATAGTGCGG+TGG - chr4.4:2052593-2052612 MS.gene015652:CDS 45.0%
!! GATTCGTGGTGCTATTATCC+TGG - chr4.4:2051925-2051944 MS.gene015652:intron 45.0%
AGCTGAGTGTGATTCCAGTG+AGG - chr4.4:2051951-2051970 MS.gene015652:intron 50.0%
AGTGTGATTCCAGTGAGGAG+AGG - chr4.4:2051956-2051975 MS.gene015652:intron 50.0%
CAAAGCCTTAGCAGTTGGCT+TGG + chr4.4:2053064-2053083 None:intergenic 50.0%
CATCACCTCATCCTTGAGAG+TGG + chr4.4:2051777-2051796 None:intergenic 50.0%
CCAGTGAGGAGAGGTTATTG+GGG - chr4.4:2051965-2051984 MS.gene015652:intron 50.0%
GAAGTAGCTACTGCGATTCG+TGG - chr4.4:2051911-2051930 MS.gene015652:intron 50.0%
GAATCACACTCAGCTTAGCC+AGG + chr4.4:2051946-2051965 None:intergenic 50.0%
GCCACACACTGTTCCTTGTA+AGG - chr4.4:2052003-2052022 MS.gene015652:intron 50.0%
TGCTGCTAGGGTTCCTAAGA+AGG - chr4.4:2052090-2052109 MS.gene015652:intron 50.0%
TTCGTATGGTTCCTGCTCCT+CGG - chr4.4:2052053-2052072 MS.gene015652:intron 50.0%
! CCGGTTCAAGGCTTTTGTTG+TGG - chr4.4:2051841-2051860 MS.gene015652:intron 50.0%
! GATGTTTTCACTTCCTCCCG+GGG - chr4.4:2052136-2052155 MS.gene015652:intron 50.0%
!! TGCCGGTTCAGAAACAAACC+CGG - chr4.4:2051804-2051823 MS.gene015652:intron 50.0%
!!! GGTGGTTTTGGCAGTGGTTT+TGG - chr4.4:2051533-2051552 MS.gene015652:CDS 50.0%
!!! GGTTTTGGCAGTGGTTTTGG+AGG - chr4.4:2051536-2051555 MS.gene015652:CDS 50.0%
AGACGACCTAGCTTGGTCAC+TGG + chr4.4:2051662-2051681 None:intergenic 55.0%
CAAGCTAGGTCGTCTCGTGA+AGG - chr4.4:2051667-2051686 MS.gene015652:intron 55.0%
CCCCAATAACCTCTCCTCAC+TGG + chr4.4:2051968-2051987 None:intergenic 55.0%
CCTCCGCCCTTTCTTCTTCA+AGG + chr4.4:2053089-2053108 None:intergenic 55.0%
CCTTGAAGAAGAAAGGGCGG+AGG - chr4.4:2053086-2053105 MS.gene015652:CDS 55.0%
CTAGGTCGTCTCGTGAAGGA+AGG - chr4.4:2051671-2051690 MS.gene015652:intron 55.0%
CTTCACGAGACGACCTAGCT+TGG + chr4.4:2051669-2051688 None:intergenic 55.0%
GCAACAATACCAGAACCCCG+AGG + chr4.4:2052073-2052092 None:intergenic 55.0%
GTTCAGAAACAAACCCGGGC+TGG - chr4.4:2051809-2051828 MS.gene015652:intron 55.0%
GTTGGCCAAGCCAACTGCTA+AGG - chr4.4:2053056-2053075 MS.gene015652:CDS 55.0%
TCGTATGGTTCCTGCTCCTC+GGG - chr4.4:2052054-2052073 MS.gene015652:intron 55.0%
TGGGTTCCAGTGACCAAGCT+AGG - chr4.4:2051653-2051672 MS.gene015652:intron 55.0%
TGGTCAGAGAACCCGGTTCA+AGG - chr4.4:2051829-2051848 MS.gene015652:intron 55.0%
! GCCGGTTCAGAAACAAACCC+GGG - chr4.4:2051805-2051824 MS.gene015652:intron 55.0%
! GGTGGAGATCGTGGTGGTTT+TGG - chr4.4:2051521-2051540 MS.gene015652:CDS 55.0%
!! AAGGGTTTTGGTGGATCCCC+GGG + chr4.4:2052155-2052174 None:intergenic 55.0%
!! CAAGGGTTTTGGTGGATCCC+CGG + chr4.4:2052156-2052175 None:intergenic 55.0%
!! GCCCGGGTTTGTTTCTGAAC+CGG + chr4.4:2051809-2051828 None:intergenic 55.0%
!!! AGTGGTTTTGGAGGTCGTGG+TGG - chr4.4:2051545-2051564 MS.gene015652:CDS 55.0%
!!! GATCGTGGTGGTTTTGGCAG+TGG - chr4.4:2051527-2051546 MS.gene015652:CDS 55.0%
ATACCAGAACCCCGAGGAGC+AGG + chr4.4:2052067-2052086 None:intergenic 60.0%
CGGGGATCCACCAAAACCCT+TGG - chr4.4:2052154-2052173 MS.gene015652:intron 60.0%
CGTATGGTTCCTGCTCCTCG+GGG - chr4.4:2052055-2052074 MS.gene015652:intron 60.0%
CTTGAGAGTGGGACCCACGA+GGG + chr4.4:2051765-2051784 None:intergenic 60.0%
GGGTCCCACTCTCAAGGATG+AGG - chr4.4:2051769-2051788 MS.gene015652:intron 60.0%
! GAACGTGGTGGAGATCGTGG+TGG - chr4.4:2051515-2051534 MS.gene015652:CDS 60.0%
! GCTGAACGTGGTGGAGATCG+TGG - chr4.4:2051512-2051531 MS.gene015652:CDS 60.0%
!!! GGCAGTGGTTTTGGAGGTCG+TGG - chr4.4:2051542-2051561 MS.gene015652:CDS 60.0%
ACCGGGTTCTCTGACCAGCC+CGG + chr4.4:2051826-2051845 None:intergenic 65.0%
CCTCGTGGGTCCCACTCTCA+AGG - chr4.4:2051763-2051782 MS.gene015652:intron 65.0%
CCTTGAGAGTGGGACCCACG+AGG + chr4.4:2051766-2051785 None:intergenic 65.0%
CGTGGTGACAGAGGTCGTGG+TGG - chr4.4:2051590-2051609 MS.gene015652:CDS 65.0%
CGTGGTGGTCGTCGTAGAGC+TGG - chr4.4:2051605-2051624 MS.gene015652:CDS 65.0%
GGACGTGGTGACAGAGGTCG+TGG - chr4.4:2051587-2051606 MS.gene015652:CDS 65.0%
GGTGACAGAGGTGGTCGTGG+TGG - chr4.4:2051566-2051585 MS.gene015652:CDS 65.0%
GGTGGTCGTCGTAGAGCTGG+AGG - chr4.4:2051608-2051627 MS.gene015652:CDS 65.0%
GGTGGTGACAGAGGTGGTCG+TGG - chr4.4:2051563-2051582 MS.gene015652:CDS 65.0%
GTTCCTGCTCCTCGGGGTTC+TGG - chr4.4:2052061-2052080 MS.gene015652:intron 65.0%
! GGAGGTCGTGGTGGTGACAG+AGG - chr4.4:2051554-2051573 MS.gene015652:CDS 65.0%
! GGTCGTGGTGGTGACAGAGG+TGG - chr4.4:2051557-2051576 MS.gene015652:CDS 65.0%
!! AGAGGTGGTCGTGGTGGACG+TGG - chr4.4:2051572-2051591 MS.gene015652:CDS 65.0%
!! CGTGGTGGACGTGGTGACAG+AGG - chr4.4:2051581-2051600 MS.gene015652:CDS 65.0%
!! GGTTTTGGTGGATCCCCGGG+AGG + chr4.4:2052152-2052171 None:intergenic 65.0%
CCGGGTTCTCTGACCAGCCC+GGG + chr4.4:2051825-2051844 None:intergenic 70.0%
!! CCCGGGCTGGTCAGAGAACC+CGG - chr4.4:2051822-2051841 MS.gene015652:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 2051509 2053113 2051509 ID=MS.gene015652
chr4.4 mRNA 2051509 2053113 2051509 ID=MS.gene015652.t1;Parent=MS.gene015652
chr4.4 exon 2052433 2053113 2052433 ID=MS.gene015652.t1.exon1;Parent=MS.gene015652.t1
chr4.4 CDS 2052433 2053113 2052433 ID=cds.MS.gene015652.t1;Parent=MS.gene015652.t1
chr4.4 exon 2051509 2051667 2051509 ID=MS.gene015652.t1.exon2;Parent=MS.gene015652.t1
chr4.4 CDS 2051509 2051667 2051509 ID=cds.MS.gene015652.t1;Parent=MS.gene015652.t1
Gene Sequence

>MS.gene015652

ATGGCTGAACGTGGTGGAGATCGTGGTGGTTTTGGCAGTGGTTTTGGAGGTCGTGGTGGTGACAGAGGTGGTCGTGGTGGACGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCTGGAGGAAGACGCGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTAGGTCGTCTCGTGAAGGAAGGTAAGATCCGAAGCCTTGAACAGATCTATCTTCATTCTCTCCCAATCAAGGAGCATCAAATCATCGATACCCTCGTGGGTCCCACTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCCGGGCTGGTCAGAGAACCCGGTTCAAGGCTTTTGTTGTGGTTGGTGATAACAATGGTCACGTTGGTCTTGGTGTCAAGTGTAGCAAAGAAGTAGCTACTGCGATTCGTGGTGCTATTATCCTGGCTAAGCTGAGTGTGATTCCAGTGAGGAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGGGGTTCTGGTATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGTATTGATGATGTTTTCACTTCCTCCCGGGGATCCACCAAAACCCTTGGAAATTTCGTCAAGGTTTTGATCTATCTCTCTAATCTATTTATACTTACTAGTTGTTTGAATTTTAATTTGGTTATGACTTCTGATTGTTTGCTAAATTGACAGAAGGAATGAACTTTTGTGTATTGTTATGGCAATACTATGATACATGGTTTCTTTATTTTAGACGGAATTATGCTGTTAGAAGTTTATTGTTGTTGGTTAATTGAAGTGTCTATTGAATTATATGCCAATTTATGTTCAACTGAAAGTGAATATGATTTTGTTACATTGTGATCATGTTCAAATTGATTGTGAGTTTGTTAAACTGTACTATTTATCTGGTTGAACAATAATTCCGTGGTCTATGAATCATCGACACAACATTGACATGAATTCATATATTGAATTGTGCCATTTTCTCATTTTAATATCATGTCTTGTTGTTTCATAGTGCGGTGGCCTATTGTTATTTTGAATAAACATAAGTCAATATCAATCCAAACTTGCATTTTGATTCATATTATCCCTGTTGGTATTGTGAATGTGAATTGATTTTAAAGAAGGACCAAACTTATGTATGTGCATTTTGTATGGTTCTTCACATAAAATTAAATTTTTGTGTAGAACCATGCAATGGACATATTCTTTGTCTCCTAAGAATTTGTCTGTTATGAATTGCAGTTTTTTTTAGTTGGCAACATTTGACTGGGTATATTACTATGACATTTCATTTACTTTTCTCACATGTAACCTTCTCTAATTTATGATTTATCTGTGCTGTGACATTTCATTTTACAGGCCACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTAACACCTGAATTCTGGAAGGAGACAAGGTTCTCCAAATCTCCATTCCAAGAGTATACTGATCTGTTGGCCAAGCCAACTGCTAAGGCTTTGATCCTTGAAGAAGAAAGGGCGGAGGCTTGA
Protein sequence

>MS.gene015652.t1

MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERAEA