Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62683.t1 | XP_003630949.1 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 6.20E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62683.t1 | Q9SCM3 | 92.3 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 1.3e-116 | 420.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62683.t1 | G7LAL7 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 4.4e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene62683 | 0.832198 | 1.08E-55 | -1.69E-46 |
| MS.gene052664 | MS.gene62683 | 0.858806 | 6.40E-63 | -1.69E-46 |
| MS.gene052666 | MS.gene62683 | 0.812932 | 3.31E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene62683 | 0.823861 | 1.10E-53 | -1.69E-46 |
| MS.gene054624 | MS.gene62683 | 0.816333 | 5.84E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene62683 | 0.828151 | 1.05E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene62683 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene62683 | 0.809721 | 1.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62683 | MS.gene039608 | PPI |
| MS.gene62683 | MS.gene83062 | PPI |
| MS.gene020525 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene32606 | PPI |
| MS.gene072924 | MS.gene62683 | PPI |
| MS.gene32604 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene53887 | PPI |
| MS.gene62683 | MS.gene014809 | PPI |
| MS.gene41081 | MS.gene62683 | PPI |
| MS.gene008435 | MS.gene62683 | PPI |
| MS.gene25178 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene049596 | PPI |
| MS.gene62683 | MS.gene014807 | PPI |
| MS.gene62683 | MS.gene072925 | PPI |
| MS.gene62683 | MS.gene05124 | PPI |
| MS.gene072926 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene93719 | PPI |
| MS.gene62683 | MS.gene052664 | PPI |
| MS.gene62683 | MS.gene014808 | PPI |
| MS.gene62683 | MS.gene055646 | PPI |
| MS.gene026524 | MS.gene62683 | PPI |
| MS.gene034801 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene046231 | PPI |
| MS.gene015652 | MS.gene62683 | PPI |
| MS.gene055644 | MS.gene62683 | PPI |
| MS.gene98978 | MS.gene62683 | PPI |
| MS.gene32605 | MS.gene62683 | PPI |
| MS.gene62683 | MS.gene020523 | PPI |
| MS.gene41083 | MS.gene62683 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62683.t1 | MTR_8g105340 | 99.642 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 0.0 | 559 |
| MS.gene62683.t1 | MTR_8g105340 | 96.416 | 279 | 1 | 1 | 1 | 279 | 1 | 270 | 0.0 | 535 |
| MS.gene62683.t1 | MTR_1g032450 | 94.662 | 281 | 9 | 3 | 1 | 279 | 1 | 277 | 0.0 | 524 |
| MS.gene62683.t1 | MTR_4g088615 | 32.727 | 165 | 94 | 4 | 91 | 246 | 147 | 303 | 3.92e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62683.t1 | AT3G57490 | 92.308 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 3.14e-152 | 426 |
| MS.gene62683.t1 | AT2G41840 | 90.308 | 227 | 19 | 1 | 44 | 270 | 49 | 272 | 5.33e-151 | 423 |
| MS.gene62683.t1 | AT1G58684 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene62683.t1 | AT1G58983 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene62683.t1 | AT1G59359 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene62683.t1 | AT1G58380 | 89.823 | 226 | 23 | 0 | 44 | 269 | 48 | 273 | 4.80e-150 | 421 |
| MS.gene62683.t1 | AT2G33800 | 29.530 | 149 | 97 | 2 | 91 | 239 | 147 | 287 | 3.67e-14 | 71.6 |
Find 98 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCTCCTTCCAGAATTC+AGG | 0.269661 | 4.2:+1453863 | None:intergenic |
| TCCAGTGAGGAGAGGTTATT+GGG | 0.276824 | 4.2:-1454896 | MS.gene62683:CDS |
| CCTCCGCCCTTTCTTCTTCA+AGG | 0.277743 | 4.2:+1453774 | None:intergenic |
| GACGAAATTACCAAGGGTTT+TGG | 0.305668 | 4.2:+1454696 | None:intergenic |
| GCAAACTGCAAAACCTTCTT+AGG | 0.306095 | 4.2:+1454757 | None:intergenic |
| ACTGTTCCTTGTAAGGTTAC+TGG | 0.306147 | 4.2:-1454850 | MS.gene62683:CDS |
| GTTCCTGCTCCTCGGGGTTC+TGG | 0.312116 | 4.2:-1454799 | MS.gene62683:CDS |
| TTCCAGTGAGGAGAGGTTAT+TGG | 0.329562 | 4.2:-1454897 | MS.gene62683:CDS |
| GGTGGAGATCGTGGTGGTTT+TGG | 0.346359 | 4.2:-1455339 | MS.gene62683:CDS |
| ATACTCTTGGAATGGAGATT+TGG | 0.351395 | 4.2:+1453835 | None:intergenic |
| TCGTATGGTTCCTGCTCCTC+GGG | 0.371220 | 4.2:-1454806 | MS.gene62683:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.377258 | 4.2:-1454782 | MS.gene62683:CDS |
| TTCGTATGGTTCCTGCTCCT+CGG | 0.380151 | 4.2:-1454807 | MS.gene62683:CDS |
| GCCCGGGTTTGTTTCTGAAC+CGG | 0.384932 | 4.2:+1455054 | None:intergenic |
| GCCACACACTGTTCCTTGTA+AGG | 0.396169 | 4.2:-1454857 | MS.gene62683:CDS |
| ATGATTTGATGCTCCTTGAT+TGG | 0.409887 | 4.2:+1455126 | None:intergenic |
| CCACAACAAAAGCCTTGAAC+CGG | 0.415813 | 4.2:+1455019 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 4.2:-1454770 | MS.gene62683:CDS |
| GACGCGAAGAAGAAGAGAAA+TGG | 0.420048 | 4.2:-1455227 | MS.gene62683:CDS |
| GATAGATCTGTTCAAGGCTT+CGG | 0.428013 | 4.2:+1455160 | None:intergenic |
| CCAACAGATCAGTATACTCT+TGG | 0.439572 | 4.2:+1453822 | None:intergenic |
| TGATTTGATGCTCCTTGATT+GGG | 0.442318 | 4.2:+1455127 | None:intergenic |
| CTTTGATCCTTGAAGAAGAA+AGG | 0.447076 | 4.2:-1453781 | MS.gene62683:CDS |
| CACTTTCCAGTAACCTTACA+AGG | 0.448418 | 4.2:+1454844 | None:intergenic |
| CGTGGTGGTCGTCGTAGAGC+TGG | 0.451382 | 4.2:-1455255 | MS.gene62683:CDS |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.452667 | 4.2:-1454783 | MS.gene62683:CDS |
| CCCGGGCTGGTCAGAGAACC+CGG | 0.453571 | 4.2:-1455038 | MS.gene62683:CDS |
| TGGTCAGAGAACCCGGTTCA+AGG | 0.464046 | 4.2:-1455031 | MS.gene62683:CDS |
| CCGGGTTCTCTGACCAGCCC+GGG | 0.469594 | 4.2:+1455038 | None:intergenic |
| ACCGGGTTCTCTGACCAGCC+CGG | 0.472370 | 4.2:+1455037 | None:intergenic |
| AATGAAGATAGATCTGTTCA+AGG | 0.480151 | 4.2:+1455154 | None:intergenic |
| ATACCAGAACCCCGAGGAGC+AGG | 0.487255 | 4.2:+1454796 | None:intergenic |
| CAAAGCCTTAGCAGTTGGCT+TGG | 0.489306 | 4.2:+1453799 | None:intergenic |
| AACAATGGTCACGTTGGTCT+TGG | 0.495777 | 4.2:-1454988 | MS.gene62683:CDS |
| CCCCAATAACCTCTCCTCAC+TGG | 0.498943 | 4.2:+1454895 | None:intergenic |
| ACGCGAAGAAGAAGAGAAAT+GGG | 0.506516 | 4.2:-1455226 | MS.gene62683:CDS |
| GAAGTAGCTACTGCGATTCG+TGG | 0.513941 | 4.2:-1454949 | MS.gene62683:CDS |
| TCTTCATTCTCTCCCAATCA+AGG | 0.515383 | 4.2:-1455139 | MS.gene62683:CDS |
| GACTGTTTGATGAAAACCTA+CGG | 0.523763 | 4.2:-1453896 | MS.gene62683:CDS |
| GATTCGTGGTGCTATTATCC+TGG | 0.526761 | 4.2:-1454935 | MS.gene62683:CDS |
| TGGGTTCCAGTGACCAAGCT+AGG | 0.527015 | 4.2:-1455207 | MS.gene62683:CDS |
| AGGATCAAAGCCTTAGCAGT+TGG | 0.528734 | 4.2:+1453794 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 4.2:-1454821 | MS.gene62683:CDS |
| AGAGGTGGTCGTGGTGGACG+TGG | 0.534621 | 4.2:-1455288 | MS.gene62683:CDS |
| GAATCACACTCAGCTTAGCC+AGG | 0.535828 | 4.2:+1454917 | None:intergenic |
| TTTCATCAAACAGTCAAAAG+TGG | 0.538001 | 4.2:+1453904 | None:intergenic |
| GGTGGTGACAGAGGTGGTCG+TGG | 0.538425 | 4.2:-1455297 | MS.gene62683:CDS |
| TTTGATCCTTGAAGAAGAAA+GGG | 0.538675 | 4.2:-1453780 | MS.gene62683:CDS |
| GGACGTGGTGACAGAGGTCG+TGG | 0.539300 | 4.2:-1455273 | MS.gene62683:CDS |
| CTTCACGAGACGACCTAGCT+TGG | 0.541068 | 4.2:+1455194 | None:intergenic |
| CGGGGATCCACCAAAACCCT+TGG | 0.542841 | 4.2:-1454706 | MS.gene62683:CDS |
| CCAAGAGTATACTGATCTGT+TGG | 0.544918 | 4.2:-1453822 | MS.gene62683:CDS |
| AGACGACCTAGCTTGGTCAC+TGG | 0.551274 | 4.2:+1455201 | None:intergenic |
| GTTCAGAAACAAACCCGGGC+TGG | 0.552874 | 4.2:-1455051 | MS.gene62683:CDS |
| AACCCTTGGTAATTTCGTCA+AGG | 0.554004 | 4.2:-1454692 | MS.gene62683:intron |
| GTTGGCCAAGCCAACTGCTA+AGG | 0.561111 | 4.2:-1453804 | MS.gene62683:CDS |
| GGTTATTGGGGTAACAAGAT+CGG | 0.562624 | 4.2:-1454883 | MS.gene62683:CDS |
| CCTCGTGGGTCCCACTCTCA+AGG | 0.569047 | 4.2:-1455097 | MS.gene62683:CDS |
| CACAACAAAAGCCTTGAACC+GGG | 0.573291 | 4.2:+1455020 | None:intergenic |
| GGGTCCCACTCTCAAGGATG+AGG | 0.575792 | 4.2:-1455091 | MS.gene62683:CDS |
| ATCACCTCATCCTTGAGAGT+GGG | 0.578711 | 4.2:+1455087 | None:intergenic |
| CATCACCTCATCCTTGAGAG+TGG | 0.579578 | 4.2:+1455086 | None:intergenic |
| TCTAACACCTGAATTCTGGA+AGG | 0.587404 | 4.2:-1453870 | MS.gene62683:CDS |
| CTGAATTCTGGAAGGAGACA+AGG | 0.587850 | 4.2:-1453862 | MS.gene62683:CDS |
| AACCTTGACGAAATTACCAA+GGG | 0.589668 | 4.2:+1454690 | None:intergenic |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.590089 | 4.2:-1454841 | MS.gene62683:CDS |
| AGATCAGTATACTCTTGGAA+TGG | 0.591366 | 4.2:+1453827 | None:intergenic |
| CTAGGTCGTCTCGTGAAGGA+AGG | 0.594091 | 4.2:-1455189 | MS.gene62683:CDS |
| TTCAGGTGTTAGAAAACCGT+AGG | 0.600291 | 4.2:+1453880 | None:intergenic |
| TGCCGGTTCAGAAACAAACC+CGG | 0.601185 | 4.2:-1455056 | MS.gene62683:CDS |
| GGTGGTCGTCGTAGAGCTGG+AGG | 0.613793 | 4.2:-1455252 | MS.gene62683:CDS |
| GGAGGTCGTGGTGGTGACAG+AGG | 0.615640 | 4.2:-1455306 | MS.gene62683:CDS |
| GCCGGTTCAGAAACAAACCC+GGG | 0.617531 | 4.2:-1455055 | MS.gene62683:CDS |
| GGTCGTGGTGGTGACAGAGG+TGG | 0.620463 | 4.2:-1455303 | MS.gene62683:CDS |
| CAAGCTAGGTCGTCTCGTGA+AGG | 0.627163 | 4.2:-1455193 | MS.gene62683:CDS |
| ACCTTACAAGGAACAGTGTG+TGG | 0.631342 | 4.2:+1454856 | None:intergenic |
| CGTATGGTTCCTGCTCCTCG+GGG | 0.632180 | 4.2:-1454805 | MS.gene62683:CDS |
| GGTGACAGAGGTGGTCGTGG+TGG | 0.633373 | 4.2:-1455294 | MS.gene62683:CDS |
| CCTTGAAGAAGAAAGGGCGG+AGG | 0.634716 | 4.2:-1453774 | MS.gene62683:CDS |
| TCAAATCATCGATACCCTCG+TGG | 0.638508 | 4.2:-1455112 | MS.gene62683:CDS |
| ATCAACAACATGGCTGAACG+TGG | 0.644114 | 4.2:-1455360 | None:intergenic |
| GCTGAACGTGGTGGAGATCG+TGG | 0.646255 | 4.2:-1455348 | MS.gene62683:CDS |
| TGAGGTGATGAAGATCATGC+CGG | 0.655740 | 4.2:-1455073 | MS.gene62683:CDS |
| CGTGGTGGACGTGGTGACAG+AGG | 0.656657 | 4.2:-1455279 | MS.gene62683:CDS |
| AAACCTTGACGAAATTACCA+AGG | 0.658811 | 4.2:+1454689 | None:intergenic |
| CTTGAGAGTGGGACCCACGA+GGG | 0.663874 | 4.2:+1455098 | None:intergenic |
| AGTGTGATTCCAGTGAGGAG+AGG | 0.664309 | 4.2:-1454904 | MS.gene62683:CDS |
| AACAACATGGCTGAACGTGG+TGG | 0.670923 | 4.2:-1455357 | None:intergenic |
| GATCCTTGAAGAAGAAAGGG+CGG | 0.672666 | 4.2:-1453777 | MS.gene62683:CDS |
| CCTTGAGAGTGGGACCCACG+AGG | 0.674713 | 4.2:+1455097 | None:intergenic |
| CAAATCATCGATACCCTCGT+GGG | 0.682658 | 4.2:-1455111 | MS.gene62683:CDS |
| GTTGTGGTTGGTGATAACAA+TGG | 0.690378 | 4.2:-1455003 | MS.gene62683:CDS |
| GGTGATAACAATGGTCACGT+TGG | 0.691414 | 4.2:-1454994 | MS.gene62683:CDS |
| CGTGGTGACAGAGGTCGTGG+TGG | 0.723864 | 4.2:-1455270 | MS.gene62683:CDS |
| AGCTGAGTGTGATTCCAGTG+AGG | 0.730503 | 4.2:-1454909 | MS.gene62683:CDS |
| CCAGTGAGGAGAGGTTATTG+GGG | 0.734558 | 4.2:-1454895 | MS.gene62683:CDS |
| GAACGTGGTGGAGATCGTGG+TGG | 0.744959 | 4.2:-1455345 | MS.gene62683:CDS |
| GCAACAATACCAGAACCCCG+AGG | 0.764619 | 4.2:+1454790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATTAAAATGAGAAAA+TGG | + | chr4.2:1454831-1454850 | None:intergenic | 15.0% |
| !! | TGTTTATTCAAAATAACAAT+AGG | + | chr4.2:1454879-1454898 | None:intergenic | 15.0% |
| !!! | TAGTTGTTTGAATTTTAATT+TGG | - | chr4.2:1454485-1454504 | MS.gene62683:intron | 15.0% |
| !! | GATAAATCATAAATTAGAGA+AGG | + | chr4.2:1455170-1455189 | None:intergenic | 20.0% |
| !!! | ATGTGAATTGATTTTAAAGA+AGG | - | chr4.2:1454958-1454977 | MS.gene62683:CDS | 20.0% |
| ! | AAAATGCACATACATAAGTT+TGG | + | chr4.2:1454985-1455004 | None:intergenic | 25.0% |
| ! | ACTTTCAGTTGAACATAAAT+TGG | + | chr4.2:1454667-1454686 | None:intergenic | 25.0% |
| ! | GTTAAACTGTACTATTTATC+TGG | - | chr4.2:1454736-1454755 | MS.gene62683:CDS | 25.0% |
| ! | TATGAATCAAAATGCAAGTT+TGG | + | chr4.2:1454917-1454936 | None:intergenic | 25.0% |
| ! | TGTTAGAAGTTTATTGTTGT+TGG | - | chr4.2:1454613-1454632 | MS.gene62683:intron | 25.0% |
| ! | TTCATAACAGACAAATTCTT+AGG | + | chr4.2:1455072-1455091 | None:intergenic | 25.0% |
| !! | TGAACTTTTGTGTATTGTTA+TGG | - | chr4.2:1454546-1454565 | MS.gene62683:intron | 25.0% |
| !! | TTATGTATGTGCATTTTGTA+TGG | - | chr4.2:1454988-1455007 | MS.gene62683:CDS | 25.0% |
| !!! | CATGGTTTCTTTATTTTAGA+CGG | - | chr4.2:1454582-1454601 | MS.gene62683:intron | 25.0% |
| !!! | GAATTGCAGTTTTTTTTAGT+TGG | - | chr4.2:1455089-1455108 | MS.gene62683:CDS | 25.0% |
| AATGAAGATAGATCTGTTCA+AGG | + | chr4.2:1453969-1453988 | None:intergenic | 30.0% | |
| TATGGCAATACTATGATACA+TGG | - | chr4.2:1454564-1454583 | MS.gene62683:intron | 30.0% | |
| TTGATTCATATTATCCCTGT+TGG | - | chr4.2:1454927-1454946 | MS.gene62683:CDS | 30.0% | |
| TTTCATCAAACAGTCAAAAG+TGG | + | chr4.2:1455219-1455238 | None:intergenic | 30.0% | |
| TTTGATCCTTGAAGAAGAAA+GGG | - | chr4.2:1455340-1455359 | MS.gene62683:CDS | 30.0% | |
| ! | TTGTTTGCTAAATTGACAGA+AGG | - | chr4.2:1454521-1454540 | MS.gene62683:intron | 30.0% |
| AAACCTTGACGAAATTACCA+AGG | + | chr4.2:1454434-1454453 | None:intergenic | 35.0% | |
| AACCTTGACGAAATTACCAA+GGG | + | chr4.2:1454433-1454452 | None:intergenic | 35.0% | |
| AGATCAGTATACTCTTGGAA+TGG | + | chr4.2:1455296-1455315 | None:intergenic | 35.0% | |
| ATACTCTTGGAATGGAGATT+TGG | + | chr4.2:1455288-1455307 | None:intergenic | 35.0% | |
| ATGATTTGATGCTCCTTGAT+TGG | + | chr4.2:1453997-1454016 | None:intergenic | 35.0% | |
| CAAAGAATATGTCCATTGCA+TGG | + | chr4.2:1455046-1455065 | None:intergenic | 35.0% | |
| CTTTGATCCTTGAAGAAGAA+AGG | - | chr4.2:1455339-1455358 | MS.gene62683:CDS | 35.0% | |
| GACTGTTTGATGAAAACCTA+CGG | - | chr4.2:1455224-1455243 | MS.gene62683:CDS | 35.0% | |
| TCACATTCACAATACCAACA+GGG | + | chr4.2:1454944-1454963 | None:intergenic | 35.0% | |
| TGATTTGATGCTCCTTGATT+GGG | + | chr4.2:1453996-1454015 | None:intergenic | 35.0% | |
| TTAGTTGGCAACATTTGACT+GGG | - | chr4.2:1455104-1455123 | MS.gene62683:CDS | 35.0% | |
| TTCACATTCACAATACCAAC+AGG | + | chr4.2:1454945-1454964 | None:intergenic | 35.0% | |
| TTTAGTTGGCAACATTTGAC+TGG | - | chr4.2:1455103-1455122 | MS.gene62683:CDS | 35.0% | |
| ! | GCTGTGACATTTCATTTTAC+AGG | - | chr4.2:1455193-1455212 | MS.gene62683:CDS | 35.0% |
| ! | GTTTTCTAACACCTGAATTC+TGG | - | chr4.2:1455246-1455265 | MS.gene62683:CDS | 35.0% |
| ! | TTTTGTGTAGAACCATGCAA+TGG | - | chr4.2:1455031-1455050 | MS.gene62683:CDS | 35.0% |
| !! | TGTCTTGTTGTTTCATAGTG+CGG | - | chr4.2:1454850-1454869 | MS.gene62683:CDS | 35.0% |
| ACGCGAAGAAGAAGAGAAAT+GGG | - | chr4.2:1453894-1453913 | MS.gene62683:CDS | 40.0% | |
| ACTGTTCCTTGTAAGGTTAC+TGG | - | chr4.2:1454270-1454289 | MS.gene62683:intron | 40.0% | |
| CACTTTCCAGTAACCTTACA+AGG | + | chr4.2:1454279-1454298 | None:intergenic | 40.0% | |
| CCAACAGATCAGTATACTCT+TGG | + | chr4.2:1455301-1455320 | None:intergenic | 40.0% | |
| CTGGTTGAACAATAATTCCG+TGG | - | chr4.2:1454755-1454774 | MS.gene62683:CDS | 40.0% | |
| GATAGATCTGTTCAAGGCTT+CGG | + | chr4.2:1453963-1453982 | None:intergenic | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | + | chr4.2:1454366-1454385 | None:intergenic | 40.0% | |
| GGTTATTGGGGTAACAAGAT+CGG | - | chr4.2:1454237-1454256 | MS.gene62683:intron | 40.0% | |
| TCTAACACCTGAATTCTGGA+AGG | - | chr4.2:1455250-1455269 | MS.gene62683:CDS | 40.0% | |
| TCTTCATTCTCTCCCAATCA+AGG | - | chr4.2:1453981-1454000 | MS.gene62683:intron | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | - | chr4.2:1454279-1454298 | MS.gene62683:intron | 40.0% | |
| TGTCGATGATTCATAGACCA+CGG | + | chr4.2:1454775-1454794 | None:intergenic | 40.0% | |
| TTCAGGTGTTAGAAAACCGT+AGG | + | chr4.2:1455243-1455262 | None:intergenic | 40.0% | |
| TTCTGGTATTGTTGCTGCTA+GGG | - | chr4.2:1454338-1454357 | MS.gene62683:intron | 40.0% | |
| ! | AACCCTTGGTAATTTCGTCA+AGG | - | chr4.2:1454428-1454447 | MS.gene62683:intron | 40.0% |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | - | chr4.2:1454366-1454385 | MS.gene62683:intron | 40.0% |
| ! | ATGATGTTTTCACTTCCTCC+CGG | - | chr4.2:1454394-1454413 | MS.gene62683:intron | 40.0% |
| ! | CCAAGAGTATACTGATCTGT+TGG | - | chr4.2:1455298-1455317 | MS.gene62683:CDS | 40.0% |
| ! | GACGAAATTACCAAGGGTTT+TGG | + | chr4.2:1454427-1454446 | None:intergenic | 40.0% |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | - | chr4.2:1454299-1454318 | MS.gene62683:intron | 40.0% |
| !! | GAAATTACCAAGGGTTTTGG+TGG | + | chr4.2:1454424-1454443 | None:intergenic | 40.0% |
| !! | GTTGTGGTTGGTGATAACAA+TGG | - | chr4.2:1454117-1454136 | MS.gene62683:intron | 40.0% |
| !! | TTCAAGGCTTTTGTTGTGGT+TGG | - | chr4.2:1454105-1454124 | MS.gene62683:intron | 40.0% |
| ACCTTACAAGGAACAGTGTG+TGG | + | chr4.2:1454267-1454286 | None:intergenic | 45.0% | |
| AGGATCAAAGCCTTAGCAGT+TGG | + | chr4.2:1455329-1455348 | None:intergenic | 45.0% | |
| ATCACCTCATCCTTGAGAGT+GGG | + | chr4.2:1454036-1454055 | None:intergenic | 45.0% | |
| CAAATCATCGATACCCTCGT+GGG | - | chr4.2:1454009-1454028 | MS.gene62683:intron | 45.0% | |
| CACAACAAAAGCCTTGAACC+GGG | + | chr4.2:1454103-1454122 | None:intergenic | 45.0% | |
| CCACAACAAAAGCCTTGAAC+CGG | + | chr4.2:1454104-1454123 | None:intergenic | 45.0% | |
| CTTGTCTCCTTCCAGAATTC+AGG | + | chr4.2:1455260-1455279 | None:intergenic | 45.0% | |
| GACGCGAAGAAGAAGAGAAA+TGG | - | chr4.2:1453893-1453912 | MS.gene62683:CDS | 45.0% | |
| GATCCTTGAAGAAGAAAGGG+CGG | - | chr4.2:1455343-1455362 | MS.gene62683:CDS | 45.0% | |
| GGTGATAACAATGGTCACGT+TGG | - | chr4.2:1454126-1454145 | MS.gene62683:intron | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | - | chr4.2:1454337-1454356 | MS.gene62683:intron | 45.0% | |
| TCAAATCATCGATACCCTCG+TGG | - | chr4.2:1454008-1454027 | MS.gene62683:intron | 45.0% | |
| TCCAGTGAGGAGAGGTTATT+GGG | - | chr4.2:1454224-1454243 | MS.gene62683:intron | 45.0% | |
| TGAGGTGATGAAGATCATGC+CGG | - | chr4.2:1454047-1454066 | MS.gene62683:intron | 45.0% | |
| TTCCAGTGAGGAGAGGTTAT+TGG | - | chr4.2:1454223-1454242 | MS.gene62683:intron | 45.0% | |
| ! | AACAATGGTCACGTTGGTCT+TGG | - | chr4.2:1454132-1454151 | MS.gene62683:intron | 45.0% |
| ! | CTGAATTCTGGAAGGAGACA+AGG | - | chr4.2:1455258-1455277 | MS.gene62683:CDS | 45.0% |
| ! | TGATGTTTTCACTTCCTCCC+GGG | - | chr4.2:1454395-1454414 | MS.gene62683:intron | 45.0% |
| !! | CTTGTTGTTTCATAGTGCGG+TGG | - | chr4.2:1454853-1454872 | MS.gene62683:CDS | 45.0% |
| !! | GATTCGTGGTGCTATTATCC+TGG | - | chr4.2:1454185-1454204 | MS.gene62683:intron | 45.0% |
| AGCTGAGTGTGATTCCAGTG+AGG | - | chr4.2:1454211-1454230 | MS.gene62683:intron | 50.0% | |
| AGTGTGATTCCAGTGAGGAG+AGG | - | chr4.2:1454216-1454235 | MS.gene62683:intron | 50.0% | |
| CAAAGCCTTAGCAGTTGGCT+TGG | + | chr4.2:1455324-1455343 | None:intergenic | 50.0% | |
| CATCACCTCATCCTTGAGAG+TGG | + | chr4.2:1454037-1454056 | None:intergenic | 50.0% | |
| CCAGTGAGGAGAGGTTATTG+GGG | - | chr4.2:1454225-1454244 | MS.gene62683:intron | 50.0% | |
| GAAGTAGCTACTGCGATTCG+TGG | - | chr4.2:1454171-1454190 | MS.gene62683:intron | 50.0% | |
| GAATCACACTCAGCTTAGCC+AGG | + | chr4.2:1454206-1454225 | None:intergenic | 50.0% | |
| GCCACACACTGTTCCTTGTA+AGG | - | chr4.2:1454263-1454282 | MS.gene62683:intron | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | - | chr4.2:1454350-1454369 | MS.gene62683:intron | 50.0% | |
| TTCGTATGGTTCCTGCTCCT+CGG | - | chr4.2:1454313-1454332 | MS.gene62683:intron | 50.0% | |
| ! | CCGGTTCAAGGCTTTTGTTG+TGG | - | chr4.2:1454101-1454120 | MS.gene62683:intron | 50.0% |
| ! | GATGTTTTCACTTCCTCCCG+GGG | - | chr4.2:1454396-1454415 | MS.gene62683:intron | 50.0% |
| !! | TGCCGGTTCAGAAACAAACC+CGG | - | chr4.2:1454064-1454083 | MS.gene62683:intron | 50.0% |
| !!! | GGTGGTTTTGGCAGTGGTTT+TGG | - | chr4.2:1453793-1453812 | MS.gene62683:CDS | 50.0% |
| !!! | GGTTTTGGCAGTGGTTTTGG+AGG | - | chr4.2:1453796-1453815 | MS.gene62683:CDS | 50.0% |
| AGACGACCTAGCTTGGTCAC+TGG | + | chr4.2:1453922-1453941 | None:intergenic | 55.0% | |
| CAAGCTAGGTCGTCTCGTGA+AGG | - | chr4.2:1453927-1453946 | MS.gene62683:intron | 55.0% | |
| CCCCAATAACCTCTCCTCAC+TGG | + | chr4.2:1454228-1454247 | None:intergenic | 55.0% | |
| CCTCCGCCCTTTCTTCTTCA+AGG | + | chr4.2:1455349-1455368 | None:intergenic | 55.0% | |
| CCTTGAAGAAGAAAGGGCGG+AGG | - | chr4.2:1455346-1455365 | MS.gene62683:CDS | 55.0% | |
| CTAGGTCGTCTCGTGAAGGA+AGG | - | chr4.2:1453931-1453950 | MS.gene62683:intron | 55.0% | |
| CTTCACGAGACGACCTAGCT+TGG | + | chr4.2:1453929-1453948 | None:intergenic | 55.0% | |
| GCAACAATACCAGAACCCCG+AGG | + | chr4.2:1454333-1454352 | None:intergenic | 55.0% | |
| GTTCAGAAACAAACCCGGGC+TGG | - | chr4.2:1454069-1454088 | MS.gene62683:intron | 55.0% | |
| GTTGGCCAAGCCAACTGCTA+AGG | - | chr4.2:1455316-1455335 | MS.gene62683:CDS | 55.0% | |
| TCGTATGGTTCCTGCTCCTC+GGG | - | chr4.2:1454314-1454333 | MS.gene62683:intron | 55.0% | |
| TGGGTTCCAGTGACCAAGCT+AGG | - | chr4.2:1453913-1453932 | MS.gene62683:intron | 55.0% | |
| TGGTCAGAGAACCCGGTTCA+AGG | - | chr4.2:1454089-1454108 | MS.gene62683:intron | 55.0% | |
| ! | GCCGGTTCAGAAACAAACCC+GGG | - | chr4.2:1454065-1454084 | MS.gene62683:intron | 55.0% |
| ! | GGTGGAGATCGTGGTGGTTT+TGG | - | chr4.2:1453781-1453800 | MS.gene62683:CDS | 55.0% |
| !! | AAGGGTTTTGGTGGATCCCC+GGG | + | chr4.2:1454415-1454434 | None:intergenic | 55.0% |
| !! | CAAGGGTTTTGGTGGATCCC+CGG | + | chr4.2:1454416-1454435 | None:intergenic | 55.0% |
| !! | GCCCGGGTTTGTTTCTGAAC+CGG | + | chr4.2:1454069-1454088 | None:intergenic | 55.0% |
| !!! | AGTGGTTTTGGAGGTCGTGG+TGG | - | chr4.2:1453805-1453824 | MS.gene62683:CDS | 55.0% |
| !!! | GATCGTGGTGGTTTTGGCAG+TGG | - | chr4.2:1453787-1453806 | MS.gene62683:CDS | 55.0% |
| ATACCAGAACCCCGAGGAGC+AGG | + | chr4.2:1454327-1454346 | None:intergenic | 60.0% | |
| CGGGGATCCACCAAAACCCT+TGG | - | chr4.2:1454414-1454433 | MS.gene62683:intron | 60.0% | |
| CGTATGGTTCCTGCTCCTCG+GGG | - | chr4.2:1454315-1454334 | MS.gene62683:intron | 60.0% | |
| CTTGAGAGTGGGACCCACGA+GGG | + | chr4.2:1454025-1454044 | None:intergenic | 60.0% | |
| GGGTCCCACTCTCAAGGATG+AGG | - | chr4.2:1454029-1454048 | MS.gene62683:intron | 60.0% | |
| ! | GAACGTGGTGGAGATCGTGG+TGG | - | chr4.2:1453775-1453794 | MS.gene62683:CDS | 60.0% |
| ! | GCTGAACGTGGTGGAGATCG+TGG | - | chr4.2:1453772-1453791 | MS.gene62683:CDS | 60.0% |
| !!! | GGCAGTGGTTTTGGAGGTCG+TGG | - | chr4.2:1453802-1453821 | MS.gene62683:CDS | 60.0% |
| ACCGGGTTCTCTGACCAGCC+CGG | + | chr4.2:1454086-1454105 | None:intergenic | 65.0% | |
| CCTCGTGGGTCCCACTCTCA+AGG | - | chr4.2:1454023-1454042 | MS.gene62683:intron | 65.0% | |
| CCTTGAGAGTGGGACCCACG+AGG | + | chr4.2:1454026-1454045 | None:intergenic | 65.0% | |
| CGTGGTGACAGAGGTCGTGG+TGG | - | chr4.2:1453850-1453869 | MS.gene62683:CDS | 65.0% | |
| CGTGGTGGTCGTCGTAGAGC+TGG | - | chr4.2:1453865-1453884 | MS.gene62683:CDS | 65.0% | |
| GGACGTGGTGACAGAGGTCG+TGG | - | chr4.2:1453847-1453866 | MS.gene62683:CDS | 65.0% | |
| GGTGACAGAGGTGGTCGTGG+TGG | - | chr4.2:1453826-1453845 | MS.gene62683:CDS | 65.0% | |
| GGTGGTCGTCGTAGAGCTGG+AGG | - | chr4.2:1453868-1453887 | MS.gene62683:CDS | 65.0% | |
| GGTGGTGACAGAGGTGGTCG+TGG | - | chr4.2:1453823-1453842 | MS.gene62683:CDS | 65.0% | |
| GTTCCTGCTCCTCGGGGTTC+TGG | - | chr4.2:1454321-1454340 | MS.gene62683:intron | 65.0% | |
| ! | GGAGGTCGTGGTGGTGACAG+AGG | - | chr4.2:1453814-1453833 | MS.gene62683:CDS | 65.0% |
| ! | GGTCGTGGTGGTGACAGAGG+TGG | - | chr4.2:1453817-1453836 | MS.gene62683:CDS | 65.0% |
| !! | AGAGGTGGTCGTGGTGGACG+TGG | - | chr4.2:1453832-1453851 | MS.gene62683:CDS | 65.0% |
| !! | CGTGGTGGACGTGGTGACAG+AGG | - | chr4.2:1453841-1453860 | MS.gene62683:CDS | 65.0% |
| !! | GGTTTTGGTGGATCCCCGGG+AGG | + | chr4.2:1454412-1454431 | None:intergenic | 65.0% |
| CCGGGTTCTCTGACCAGCCC+GGG | + | chr4.2:1454085-1454104 | None:intergenic | 70.0% | |
| !! | CCCGGGCTGGTCAGAGAACC+CGG | - | chr4.2:1454082-1454101 | MS.gene62683:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 1453769 | 1455373 | 1453769 | ID=MS.gene62683 |
| chr4.2 | mRNA | 1453769 | 1455373 | 1453769 | ID=MS.gene62683.t1;Parent=MS.gene62683 |
| chr4.2 | exon | 1454693 | 1455373 | 1454693 | ID=MS.gene62683.t1.exon1;Parent=MS.gene62683.t1 |
| chr4.2 | CDS | 1454693 | 1455373 | 1454693 | ID=cds.MS.gene62683.t1;Parent=MS.gene62683.t1 |
| chr4.2 | exon | 1453769 | 1453927 | 1453769 | ID=MS.gene62683.t1.exon2;Parent=MS.gene62683.t1 |
| chr4.2 | CDS | 1453769 | 1453927 | 1453769 | ID=cds.MS.gene62683.t1;Parent=MS.gene62683.t1 |
| Gene Sequence |
| Protein sequence |
