Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98978.t1 | XP_013466583.1 | 99.6 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 3.20E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98978.t1 | Q9SCM3 | 92.3 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 1.7e-116 | 420.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98978.t1 | A0A072VF11 | 99.6 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 2.3e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene98978 | 0.899759 | 1.44E-77 | -1.69E-46 |
| MS.gene050134 | MS.gene98978 | 0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene051925 | MS.gene98978 | 0.828219 | 1.02E-54 | -1.69E-46 |
| MS.gene051927 | MS.gene98978 | 0.807959 | 3.92E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene98978 | 0.831551 | 1.57E-55 | -1.69E-46 |
| MS.gene052666 | MS.gene98978 | 0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene054624 | MS.gene98978 | 0.802093 | 6.61E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene98978 | 0.818715 | 1.70E-52 | -1.69E-46 |
| MS.gene057321 | MS.gene98978 | 0.825095 | 5.65E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene98978 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene98978 | 0.846607 | 1.95E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072924 | MS.gene98978 | PPI |
| MS.gene32604 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene072925 | PPI |
| MS.gene41081 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene32605 | PPI |
| MS.gene008435 | MS.gene98978 | PPI |
| MS.gene25178 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene015652 | PPI |
| MS.gene072926 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene039608 | PPI |
| MS.gene98978 | MS.gene83062 | PPI |
| MS.gene98978 | MS.gene32606 | PPI |
| MS.gene98978 | MS.gene53887 | PPI |
| MS.gene98978 | MS.gene014809 | PPI |
| MS.gene026524 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene020523 | PPI |
| MS.gene034801 | MS.gene98978 | PPI |
| MS.gene015652 | MS.gene98978 | PPI |
| MS.gene055644 | MS.gene98978 | PPI |
| MS.gene98978 | MS.gene014807 | PPI |
| MS.gene98978 | MS.gene05124 | PPI |
| MS.gene98978 | MS.gene62683 | PPI |
| MS.gene98978 | MS.gene93719 | PPI |
| MS.gene98978 | MS.gene052664 | PPI |
| MS.gene98978 | MS.gene014808 | PPI |
| MS.gene98978 | MS.gene055646 | PPI |
| MS.gene98978 | MS.gene049596 | PPI |
| MS.gene98978 | MS.gene046231 | PPI |
| MS.gene41083 | MS.gene98978 | PPI |
| MS.gene020525 | MS.gene98978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98978.t1 | MTR_1g032450 | 99.639 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 0.0 | 558 |
| MS.gene98978.t1 | MTR_8g105340 | 94.662 | 281 | 9 | 3 | 1 | 277 | 1 | 279 | 0.0 | 524 |
| MS.gene98978.t1 | MTR_8g105340 | 98.729 | 236 | 3 | 0 | 42 | 277 | 35 | 270 | 5.24e-173 | 478 |
| MS.gene98978.t1 | MTR_4g088615 | 32.727 | 165 | 94 | 4 | 89 | 244 | 147 | 303 | 2.36e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98978.t1 | AT3G57490 | 92.308 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 2.31e-152 | 426 |
| MS.gene98978.t1 | AT2G41840 | 90.308 | 227 | 19 | 1 | 42 | 268 | 49 | 272 | 4.66e-151 | 424 |
| MS.gene98978.t1 | AT1G58684 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene98978.t1 | AT1G58983 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene98978.t1 | AT1G59359 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene98978.t1 | AT1G58380 | 87.342 | 237 | 27 | 1 | 42 | 275 | 48 | 284 | 3.38e-150 | 421 |
| MS.gene98978.t1 | AT2G33800 | 29.530 | 149 | 97 | 2 | 89 | 237 | 147 | 287 | 2.33e-14 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTGACACCTGAATTC+TGG | 0.269557 | 1.4:+16999620 | MS.gene98978:CDS |
| GCAAACTGCAAAACCTTCTT+AGG | 0.278482 | 1.4:-16998036 | None:intergenic |
| AACGAAATTGCCAAGGGTTT+TGG | 0.290170 | 1.4:-16998097 | None:intergenic |
| GCCGGATTCGGAAGAGGTTT+CGG | 0.325361 | 1.4:+16997478 | MS.gene98978:CDS |
| GACTGTCTGATGAAGACTTA+TGG | 0.329475 | 1.4:+16999598 | MS.gene98978:CDS |
| CCGGGTTCGTTGACCGGCTC+TGG | 0.332475 | 1.4:-16997755 | None:intergenic |
| CGAGTCTCCTTCCAGAATTC+AGG | 0.345000 | 1.4:-16999631 | None:intergenic |
| TCCGAAACCTCTTCCGAATC+CGG | 0.356237 | 1.4:-16997479 | None:intergenic |
| GATGATTTGGTGTTCTTTGA+TGG | 0.360586 | 1.4:-16997668 | None:intergenic |
| GTTCCTGCACCGAGAGGTTC+TGG | 0.361388 | 1.4:+16997994 | MS.gene98978:CDS |
| GGAGGCCGCCGCAGAGGCGC+TGG | 0.365196 | 1.4:+16997541 | MS.gene98978:CDS |
| CGCCTCTGCGGCGGCCTCCA+CGG | 0.366930 | 1.4:-16997537 | None:intergenic |
| CTACTAAGGTATCGATGATT+TGG | 0.379765 | 1.4:-16997681 | None:intergenic |
| CCAACATATCAGTGTACTCT+TGG | 0.379970 | 1.4:-16999672 | None:intergenic |
| CACAACAAAGGCCTTGATCT+TGG | 0.385331 | 1.4:+16999702 | MS.gene98978:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.392766 | 1.4:+16998011 | MS.gene98978:CDS |
| TTCAAAGCCTTTGTCGTTGT+GGG | 0.395273 | 1.4:+16997778 | MS.gene98978:CDS |
| ACTGTGCCGTGTAAGGTTAC+TGG | 0.397057 | 1.4:+16997943 | MS.gene98978:CDS |
| AAGATCAAGGCCTTTGTTGT+GGG | 0.399949 | 1.4:-16999700 | None:intergenic |
| AGACGGCCGAGCTTTGTTAC+TGG | 0.409258 | 1.4:-16997592 | None:intergenic |
| AACCCTTGGCAATTTCGTTA+AGG | 0.410713 | 1.4:+16998101 | MS.gene98978:CDS |
| CAAGATCAAGGCCTTTGTTG+TGG | 0.418524 | 1.4:-16999701 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 1.4:+16998023 | MS.gene98978:CDS |
| TTTGAACCGGGTTCGTTGAC+CGG | 0.422499 | 1.4:-16997761 | None:intergenic |
| TTCCTGTGAGAAGAGGTTAC+TGG | 0.425027 | 1.4:+16997896 | MS.gene98978:CDS |
| ATCACTTCGTCTTTCAGAGT+GGG | 0.431632 | 1.4:-16997706 | None:intergenic |
| CAACGACAAAGGCTTTGAAC+CGG | 0.439377 | 1.4:-16997774 | None:intergenic |
| ACCGGAGACAGAGCCGGATT+CGG | 0.440482 | 1.4:+16997466 | MS.gene98978:CDS |
| TCCGAATCCGGCTCTGTCTC+CGG | 0.446226 | 1.4:-16997467 | None:intergenic |
| CTCTGTCTCCGGTAGCTCCT+CGG | 0.448842 | 1.4:-16997456 | None:intergenic |
| GCTCTGGTTTGTTTCTGAAC+CGG | 0.455324 | 1.4:-16997739 | None:intergenic |
| GACGGCCGAGCTTTGTTACT+GGG | 0.470512 | 1.4:-16997591 | None:intergenic |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.471297 | 1.4:+16998010 | MS.gene98978:CDS |
| CTTGATCTTGGAGGAGGAAA+GGG | 0.473493 | 1.4:+16999714 | MS.gene98978:CDS |
| TCCTGTGAGAAGAGGTTACT+GGG | 0.474658 | 1.4:+16997897 | MS.gene98978:CDS |
| GTTCAAAGCCTTTGTCGTTG+TGG | 0.481091 | 1.4:+16997777 | MS.gene98978:CDS |
| GCCACATACTGTGCCGTGTA+AGG | 0.481615 | 1.4:+16997936 | MS.gene98978:CDS |
| TTTCAGAGTGGGGCCTACTA+AGG | 0.486712 | 1.4:-16997695 | None:intergenic |
| GGCCGTGGAGGCCGCCGCAG+AGG | 0.493445 | 1.4:+16997535 | MS.gene98978:CDS |
| CAAATCATCGATACCTTAGT+AGG | 0.501293 | 1.4:+16997682 | MS.gene98978:CDS |
| GACAGAGCCGGATTCGGAAG+AGG | 0.501973 | 1.4:+16997472 | MS.gene98978:CDS |
| GCTAGGTGTGAAGTGTAGTA+AGG | 0.515884 | 1.4:+16997822 | MS.gene98978:CDS |
| CTCGGCCGTCTCGTCAAAGA+AGG | 0.518865 | 1.4:+16997604 | MS.gene98978:CDS |
| CCTTTCCTCCTCCAAGATCA+AGG | 0.523177 | 1.4:-16999713 | None:intergenic |
| AGAGGCGGAGATCGTGGCCG+TGG | 0.527803 | 1.4:+16997520 | MS.gene98978:CDS |
| ACCTTACACGGCACAGTATG+TGG | 0.528460 | 1.4:-16997937 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 1.4:+16997972 | MS.gene98978:CDS |
| CCAAGAGTACACTGATATGT+TGG | 0.536690 | 1.4:+16999672 | MS.gene98978:CDS |
| CGTGGTCGAGGTGGCAGAGG+CGG | 0.538891 | 1.4:+16997505 | MS.gene98978:CDS |
| CACTTTCCAGTAACCTTACA+CGG | 0.538940 | 1.4:-16997949 | None:intergenic |
| ATACCAGAACCTCTCGGTGC+AGG | 0.541543 | 1.4:-16997997 | None:intergenic |
| AACGACAAAGGCTTTGAACC+GGG | 0.543012 | 1.4:-16997773 | None:intergenic |
| ATGGCAGACCGAGGAGCTAC+CGG | 0.543216 | 1.4:+16997448 | MS.gene98978:CDS |
| CATCACTTCGTCTTTCAGAG+TGG | 0.543843 | 1.4:-16997707 | None:intergenic |
| AGGCGCTGGCCGTCGTGAAG+AGG | 0.545371 | 1.4:+16997555 | MS.gene98978:CDS |
| GGTTTCGGAGATCGTGGTCG+AGG | 0.546990 | 1.4:+16997493 | MS.gene98978:CDS |
| CTTGACACCTGAATTCTGGA+AGG | 0.547375 | 1.4:+16999624 | MS.gene98978:CDS |
| CCTTGATCTTGGAGGAGGAA+AGG | 0.547470 | 1.4:+16999713 | MS.gene98978:CDS |
| AACAAAGGCCTTGATCTTGG+AGG | 0.548080 | 1.4:+16999705 | MS.gene98978:CDS |
| GATCGTGGTCGAGGTGGCAG+AGG | 0.555874 | 1.4:+16997502 | MS.gene98978:CDS |
| ATATCAGTGTACTCTTGGAA+TGG | 0.556129 | 1.4:-16999667 | None:intergenic |
| CCAGAGCCGGTCAACGAACC+CGG | 0.560802 | 1.4:+16997755 | MS.gene98978:CDS |
| ATGATTTGGTGTTCTTTGAT+GGG | 0.563159 | 1.4:-16997667 | None:intergenic |
| AGGGGATCTACCAAAACCCT+TGG | 0.565634 | 1.4:+16998087 | MS.gene98978:CDS |
| GGAGCTACCGGAGACAGAGC+CGG | 0.566711 | 1.4:+16997460 | MS.gene98978:CDS |
| AAAGGCCTTGATCTTGGAGG+AGG | 0.570185 | 1.4:+16999708 | MS.gene98978:CDS |
| TCACTTCGTCTTTCAGAGTG+GGG | 0.570297 | 1.4:-16997705 | None:intergenic |
| CCCCAGTAACCTCTTCTCAC+AGG | 0.570541 | 1.4:-16997898 | None:intergenic |
| GAAGTTGCTACTGCAATTCG+CGG | 0.571598 | 1.4:+16997844 | MS.gene98978:CDS |
| TGGGTCCCAGTAACAAAGCT+CGG | 0.574303 | 1.4:+16997586 | MS.gene98978:CDS |
| GGTGACAACAATGGTCATGT+TGG | 0.579247 | 1.4:+16997799 | MS.gene98978:CDS |
| GTGACAACAATGGTCATGTT+GGG | 0.579633 | 1.4:+16997800 | MS.gene98978:CDS |
| GGTGGCAGAGGCGGAGATCG+TGG | 0.589603 | 1.4:+16997514 | MS.gene98978:CDS |
| GTTGTCACCCACAACGACAA+AGG | 0.596166 | 1.4:-16997785 | None:intergenic |
| GTTCTTTGATGGGAAGAGAG+TGG | 0.601081 | 1.4:-16997657 | None:intergenic |
| AGACCTTAACGAAATTGCCA+AGG | 0.604222 | 1.4:-16998104 | None:intergenic |
| GGTAGATTTGTTCTAAGCTG+CGG | 0.604842 | 1.4:-16997633 | None:intergenic |
| CTTTGATGGGAAGAGAGTGG+AGG | 0.605151 | 1.4:-16997654 | None:intergenic |
| CGAAGTGATGAAAATCATGC+CGG | 0.605193 | 1.4:+16997720 | MS.gene98978:CDS |
| GTTCAGAAACAAACCAGAGC+CGG | 0.607188 | 1.4:+16997742 | MS.gene98978:CDS |
| GTTGGCAAAGCCCACAACAA+AGG | 0.608366 | 1.4:+16999690 | MS.gene98978:CDS |
| GACCTTAACGAAATTGCCAA+GGG | 0.610712 | 1.4:-16998103 | None:intergenic |
| CACGACGGCCAGCGCCTCTG+CGG | 0.615990 | 1.4:-16997549 | None:intergenic |
| GGAAGAGGTTTCGGAGATCG+TGG | 0.617372 | 1.4:+16997487 | MS.gene98978:CDS |
| AACAATGGTCATGTTGGGCT+AGG | 0.617527 | 1.4:+16997805 | MS.gene98978:CDS |
| GACGGCCAGCGCCTCTGCGG+CGG | 0.619513 | 1.4:-16997546 | None:intergenic |
| TTCGGAGATCGTGGTCGAGG+TGG | 0.626828 | 1.4:+16997496 | MS.gene98978:CDS |
| GTCGTTGTGGGTGACAACAA+TGG | 0.631670 | 1.4:+16997790 | MS.gene98978:CDS |
| AGTGTGATTCCTGTGAGAAG+AGG | 0.634613 | 1.4:+16997889 | MS.gene98978:CDS |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.643088 | 1.4:+16997952 | MS.gene98978:CDS |
| GCAACAATACCAGAACCTCT+CGG | 0.646729 | 1.4:-16998003 | None:intergenic |
| GGCGGAGATCGTGGCCGTGG+AGG | 0.662594 | 1.4:+16997523 | MS.gene98978:CDS |
| CGTATGGTTCCTGCACCGAG+AGG | 0.664454 | 1.4:+16997988 | MS.gene98978:CDS |
| GATCTTGGAGGAGGAAAGGG+CGG | 0.671501 | 1.4:+16999717 | MS.gene98978:CDS |
| CTGTGAGAAGAGGTTACTGG+GGG | 0.685323 | 1.4:+16997899 | MS.gene98978:CDS |
| CAACCAACAATGGCAGACCG+AGG | 0.687866 | 1.4:+16997439 | None:intergenic |
| CCTGTGAGAAGAGGTTACTG+GGG | 0.696718 | 1.4:+16997898 | MS.gene98978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAATTAAAATATGA+AGG | - | chr1.4:16998140-16998159 | None:intergenic | 10.0% |
| !! | AATAAATGAATATATAAAAC+AGG | - | chr1.4:16998320-16998339 | None:intergenic | 10.0% |
| !! | TCAATTGTATATTATAAACA+GGG | + | chr1.4:16999276-16999295 | MS.gene98978:intron | 15.0% |
| !! | TTCAATTGTATATTATAAAC+AGG | + | chr1.4:16999275-16999294 | MS.gene98978:intron | 15.0% |
| !!! | AATTTTAAAATATCATTCCA+AGG | - | chr1.4:16999304-16999323 | None:intergenic | 15.0% |
| !!! | ATTGATTTGAAAATAAATGA+TGG | + | chr1.4:16998977-16998996 | MS.gene98978:intron | 15.0% |
| !!! | ATTTTAAAATATCATTCCAA+GGG | - | chr1.4:16999303-16999322 | None:intergenic | 15.0% |
| !!! | CTTTATTTCAATATTTTTGT+TGG | + | chr1.4:16999000-16999019 | MS.gene98978:intron | 15.0% |
| !!! | TGTTTATGATTTTATGTTTA+CGG | + | chr1.4:16998175-16998194 | MS.gene98978:intron | 15.0% |
| !! | AATTAATCATTTGCAAAACT+TGG | + | chr1.4:16998616-16998635 | MS.gene98978:intron | 20.0% |
| !! | CAATTGTATATTATAAACAG+GGG | + | chr1.4:16999277-16999296 | MS.gene98978:intron | 20.0% |
| !! | CATTTGTTTGTATAATCAAA+TGG | + | chr1.4:16999355-16999374 | MS.gene98978:intron | 20.0% |
| !! | TCTTATTGTGAGTAAAATTT+AGG | + | chr1.4:16998932-16998951 | MS.gene98978:intron | 20.0% |
| !!! | AATCCATTTAAAATGTAAAG+TGG | - | chr1.4:16999113-16999132 | None:intergenic | 20.0% |
| !!! | ATCCATTTAAAATGTAAAGT+GGG | - | chr1.4:16999112-16999131 | None:intergenic | 20.0% |
| !!! | ATCTTTAATTTGTTCATCAA+TGG | + | chr1.4:16999078-16999097 | MS.gene98978:intron | 20.0% |
| !!! | TATTTCAATATTTTTGTTGG+AGG | + | chr1.4:16999003-16999022 | MS.gene98978:intron | 20.0% |
| !!! | TCATAGAATTTAACTTGAAA+TGG | + | chr1.4:16999155-16999174 | MS.gene98978:intron | 20.0% |
| !!! | TTAATGCTATTTATTTTTGC+AGG | + | chr1.4:16999567-16999586 | MS.gene98978:intron | 20.0% |
| !!! | TTTATTTGAGTTGTATAATG+TGG | + | chr1.4:16998334-16998353 | MS.gene98978:intron | 20.0% |
| ! | AATAGATAGATAGAAACAAG+TGG | - | chr1.4:16998788-16998807 | None:intergenic | 25.0% |
| ! | ATTATAATCAACAGACTTGT+TGG | + | chr1.4:16999212-16999231 | MS.gene98978:intron | 25.0% |
| ! | GTAAATAGAAGCTAGATAAA+TGG | + | chr1.4:16998823-16998842 | MS.gene98978:intron | 25.0% |
| ! | TTTAATGTTCTTAACCACAA+GGG | - | chr1.4:16999331-16999350 | None:intergenic | 25.0% |
| !! | TACCCACTTTACATTTTAAA+TGG | + | chr1.4:16999107-16999126 | MS.gene98978:intron | 25.0% |
| !! | TTATAATCAACAGACTTGTT+GGG | + | chr1.4:16999213-16999232 | MS.gene98978:intron | 25.0% |
| !! | TTTTAATGTTCTTAACCACA+AGG | - | chr1.4:16999332-16999351 | None:intergenic | 25.0% |
| !!! | ATGATGTTTTTACTTCTTCA+AGG | + | chr1.4:16998067-16998086 | MS.gene98978:CDS | 25.0% |
| !!! | TGATGTTTTTACTTCTTCAA+GGG | + | chr1.4:16998068-16998087 | MS.gene98978:CDS | 25.0% |
| AAAATAGCGAAGTCACTAAT+GGG | + | chr1.4:16998750-16998769 | MS.gene98978:intron | 30.0% | |
| AAGCTATATTGGAGAACTTA+TGG | + | chr1.4:16998437-16998456 | MS.gene98978:intron | 30.0% | |
| ATCTATCTATTTCCCTTGAA+TGG | + | chr1.4:16998797-16998816 | MS.gene98978:intron | 30.0% | |
| CTATCAATTTACGAGATAGA+TGG | + | chr1.4:16998698-16998717 | MS.gene98978:intron | 30.0% | |
| GATAAGTTGTTTATCCAAAC+AGG | - | chr1.4:16998361-16998380 | None:intergenic | 30.0% | |
| GCTGGATATTTCAATATGAT+TGG | + | chr1.4:16999028-16999047 | MS.gene98978:intron | 30.0% | |
| TAAAATAGCGAAGTCACTAA+TGG | + | chr1.4:16998749-16998768 | MS.gene98978:intron | 30.0% | |
| TCTATTTACTGTCCATTCAA+GGG | - | chr1.4:16998812-16998831 | None:intergenic | 30.0% | |
| TTCTATTTACTGTCCATTCA+AGG | - | chr1.4:16998813-16998832 | None:intergenic | 30.0% | |
| !! | ATGATTTGGTGTTCTTTGAT+GGG | - | chr1.4:16997670-16997689 | None:intergenic | 30.0% |
| !! | GATGTTTTTACTTCTTCAAG+GGG | + | chr1.4:16998069-16998088 | MS.gene98978:CDS | 30.0% |
| !! | GCTGTTTTCATAAGCTATAT+TGG | + | chr1.4:16998426-16998445 | MS.gene98978:intron | 30.0% |
| !! | GTTTCATTGGTTTATAGTTC+TGG | + | chr1.4:16999461-16999480 | MS.gene98978:intron | 30.0% |
| !! | TAGTGACTTCGCTATTTTAA+AGG | - | chr1.4:16998748-16998767 | None:intergenic | 30.0% |
| !! | TTCAATATTTTTGTTGGAGG+AGG | + | chr1.4:16999006-16999025 | MS.gene98978:intron | 30.0% |
| !! | TTTGTGTTGGTTTGTTTCAT+TGG | + | chr1.4:16999448-16999467 | MS.gene98978:intron | 30.0% |
| !!! | TTTTAAAATTGACTCCCTTG+TGG | + | chr1.4:16999314-16999333 | MS.gene98978:intron | 30.0% |
| AGAAACAAGTGGAAGATTAG+AGG | - | chr1.4:16998777-16998796 | None:intergenic | 35.0% | |
| ATATCAGTGTACTCTTGGAA+TGG | - | chr1.4:16999670-16999689 | None:intergenic | 35.0% | |
| ATTACAGGGTCTATTGTGAT+TGG | - | chr1.4:16998565-16998584 | None:intergenic | 35.0% | |
| CAAACACGAGTAACAAATTC+TGG | - | chr1.4:16999519-16999538 | None:intergenic | 35.0% | |
| CAAATCATCGATACCTTAGT+AGG | + | chr1.4:16997682-16997701 | MS.gene98978:CDS | 35.0% | |
| CATGCTTTCAAATGAAGTGT+TGG | + | chr1.4:16998868-16998887 | MS.gene98978:intron | 35.0% | |
| GACATAAGTGATAGGTTAGT+GGG | + | chr1.4:16998720-16998739 | MS.gene98978:intron | 35.0% | |
| GATAGATGGACATAAGTGAT+AGG | + | chr1.4:16998712-16998731 | MS.gene98978:intron | 35.0% | |
| TATGTGTGTACAAACTTGAG+TGG | + | chr1.4:16998905-16998924 | MS.gene98978:intron | 35.0% | |
| TCGTGAAGAGGAAGAAAAAT+GGG | + | chr1.4:16997567-16997586 | MS.gene98978:CDS | 35.0% | |
| TGGTGTGATTATATGTAGCT+AGG | + | chr1.4:16998636-16998655 | MS.gene98978:intron | 35.0% | |
| TTGTATAATGTGGACCTGTT+TGG | + | chr1.4:16998344-16998363 | MS.gene98978:intron | 35.0% | |
| ! | ATTTTTCTTCCTCTTCACGA+CGG | - | chr1.4:16997567-16997586 | None:intergenic | 35.0% |
| ! | CTTCATTTGAAAGCATGTCT+AGG | - | chr1.4:16998865-16998884 | None:intergenic | 35.0% |
| !! | CTACTAAGGTATCGATGATT+TGG | - | chr1.4:16997684-16997703 | None:intergenic | 35.0% |
| !! | GATGATTTGGTGTTCTTTGA+TGG | - | chr1.4:16997671-16997690 | None:intergenic | 35.0% |
| AACCCTTGGCAATTTCGTTA+AGG | + | chr1.4:16998101-16998120 | MS.gene98978:CDS | 40.0% | |
| AGACCTTAACGAAATTGCCA+AGG | - | chr1.4:16998107-16998126 | None:intergenic | 40.0% | |
| ATATTATAAACAGGGGCCCT+TGG | + | chr1.4:16999284-16999303 | MS.gene98978:intron | 40.0% | |
| ATCACTTCGTCTTTCAGAGT+GGG | - | chr1.4:16997709-16997728 | None:intergenic | 40.0% | |
| CACTTTCCAGTAACCTTACA+CGG | - | chr1.4:16997952-16997971 | None:intergenic | 40.0% | |
| CCAACATATCAGTGTACTCT+TGG | - | chr1.4:16999675-16999694 | None:intergenic | 40.0% | |
| CGAAGTGATGAAAATCATGC+CGG | + | chr1.4:16997720-16997739 | MS.gene98978:CDS | 40.0% | |
| GACCTTAACGAAATTGCCAA+GGG | - | chr1.4:16998106-16998125 | None:intergenic | 40.0% | |
| GACTGTCTGATGAAGACTTA+TGG | + | chr1.4:16999598-16999617 | MS.gene98978:CDS | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | - | chr1.4:16998039-16998058 | None:intergenic | 40.0% | |
| GCATACATAGATTCGATTGC+AGG | - | chr1.4:16999497-16999516 | None:intergenic | 40.0% | |
| GGACATAAGTGATAGGTTAG+TGG | + | chr1.4:16998719-16998738 | MS.gene98978:intron | 40.0% | |
| GGTTAGTGACAGTGTTAGTT+TGG | + | chr1.4:16998657-16998676 | MS.gene98978:intron | 40.0% | |
| GTCATATATTGAGACAGTGC+TGG | + | chr1.4:16999417-16999436 | MS.gene98978:intron | 40.0% | |
| GTCGTGAAGAGGAAGAAAAA+TGG | + | chr1.4:16997566-16997585 | MS.gene98978:CDS | 40.0% | |
| GTGACAACAATGGTCATGTT+GGG | + | chr1.4:16997800-16997819 | MS.gene98978:CDS | 40.0% | |
| GTTACTGGGGGAATAAGATT+GGG | + | chr1.4:16997911-16997930 | MS.gene98978:CDS | 40.0% | |
| GTTTCTTGACACCTGAATTC+TGG | + | chr1.4:16999620-16999639 | MS.gene98978:CDS | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | + | chr1.4:16997952-16997971 | MS.gene98978:CDS | 40.0% | |
| TTCAAAGCCTTTGTCGTTGT+GGG | + | chr1.4:16997778-16997797 | MS.gene98978:CDS | 40.0% | |
| TTCTGGTATTGTTGCTGCTA+GGG | + | chr1.4:16998011-16998030 | MS.gene98978:CDS | 40.0% | |
| ! | AACGAAATTGCCAAGGGTTT+TGG | - | chr1.4:16998100-16998119 | None:intergenic | 40.0% |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | + | chr1.4:16998039-16998058 | MS.gene98978:CDS | 40.0% |
| ! | AAGATCAAGGCCTTTGTTGT+GGG | - | chr1.4:16999703-16999722 | None:intergenic | 40.0% |
| ! | CCAAGAGTACACTGATATGT+TGG | + | chr1.4:16999672-16999691 | MS.gene98978:CDS | 40.0% |
| ! | GGTAGATTTGTTCTAAGCTG+CGG | - | chr1.4:16997636-16997655 | None:intergenic | 40.0% |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | + | chr1.4:16997972-16997991 | MS.gene98978:CDS | 40.0% |
| ! | TTTTGCCTTCTTTGACGAGA+CGG | - | chr1.4:16997612-16997631 | None:intergenic | 40.0% |
| !! | ATATTTTTGTTGGAGGAGGC+TGG | + | chr1.4:16999010-16999029 | MS.gene98978:intron | 40.0% |
| !! | ATGAAGTGTTGGCGCTAAAT+AGG | + | chr1.4:16998879-16998898 | MS.gene98978:intron | 40.0% |
| AACAAAGGCCTTGATCTTGG+AGG | + | chr1.4:16999705-16999724 | MS.gene98978:CDS | 45.0% | |
| AACAATGGTCATGTTGGGCT+AGG | + | chr1.4:16997805-16997824 | MS.gene98978:CDS | 45.0% | |
| AGTGTGATTCCTGTGAGAAG+AGG | + | chr1.4:16997889-16997908 | MS.gene98978:CDS | 45.0% | |
| CAAGATCAAGGCCTTTGTTG+TGG | - | chr1.4:16999704-16999723 | None:intergenic | 45.0% | |
| CACAACAAAGGCCTTGATCT+TGG | + | chr1.4:16999702-16999721 | MS.gene98978:CDS | 45.0% | |
| CATCACTTCGTCTTTCAGAG+TGG | - | chr1.4:16997710-16997729 | None:intergenic | 45.0% | |
| CTTGACACCTGAATTCTGGA+AGG | + | chr1.4:16999624-16999643 | MS.gene98978:CDS | 45.0% | |
| CTTGATCTTGGAGGAGGAAA+GGG | + | chr1.4:16999714-16999733 | MS.gene98978:CDS | 45.0% | |
| GAAGTTGCTACTGCAATTCG+CGG | + | chr1.4:16997844-16997863 | MS.gene98978:CDS | 45.0% | |
| GCAACAATACCAGAACCTCT+CGG | - | chr1.4:16998006-16998025 | None:intergenic | 45.0% | |
| GCTAGGTGTGAAGTGTAGTA+AGG | + | chr1.4:16997822-16997841 | MS.gene98978:CDS | 45.0% | |
| GGTGACAACAATGGTCATGT+TGG | + | chr1.4:16997799-16997818 | MS.gene98978:CDS | 45.0% | |
| GGTTACTGGGGGAATAAGAT+TGG | + | chr1.4:16997910-16997929 | MS.gene98978:CDS | 45.0% | |
| GTTCAAAGCCTTTGTCGTTG+TGG | + | chr1.4:16997777-16997796 | MS.gene98978:CDS | 45.0% | |
| GTTCAGAAACAAACCAGAGC+CGG | + | chr1.4:16997742-16997761 | MS.gene98978:CDS | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | + | chr1.4:16998010-16998029 | MS.gene98978:CDS | 45.0% | |
| GTTCTTTGATGGGAAGAGAG+TGG | - | chr1.4:16997660-16997679 | None:intergenic | 45.0% | |
| TCACTTCGTCTTTCAGAGTG+GGG | - | chr1.4:16997708-16997727 | None:intergenic | 45.0% | |
| TCCTGTGAGAAGAGGTTACT+GGG | + | chr1.4:16997897-16997916 | MS.gene98978:CDS | 45.0% | |
| TCGCGCTTCTTAGCATTACA+GGG | - | chr1.4:16998579-16998598 | None:intergenic | 45.0% | |
| TTCCTGTGAGAAGAGGTTAC+TGG | + | chr1.4:16997896-16997915 | MS.gene98978:CDS | 45.0% | |
| TTCGCGCTTCTTAGCATTAC+AGG | - | chr1.4:16998580-16998599 | None:intergenic | 45.0% | |
| ! | GCTGGATGAGTAGTTTGTGT+TGG | + | chr1.4:16999435-16999454 | MS.gene98978:intron | 45.0% |
| !! | AACGACAAAGGCTTTGAACC+GGG | - | chr1.4:16997776-16997795 | None:intergenic | 45.0% |
| !! | CAACGACAAAGGCTTTGAAC+CGG | - | chr1.4:16997777-16997796 | None:intergenic | 45.0% |
| !! | GCTCTGGTTTGTTTCTGAAC+CGG | - | chr1.4:16997742-16997761 | None:intergenic | 45.0% |
| AAAGGCCTTGATCTTGGAGG+AGG | + | chr1.4:16999708-16999727 | MS.gene98978:CDS | 50.0% | |
| ACCTTACACGGCACAGTATG+TGG | - | chr1.4:16997940-16997959 | None:intergenic | 50.0% | |
| ACTGTGCCGTGTAAGGTTAC+TGG | + | chr1.4:16997943-16997962 | MS.gene98978:CDS | 50.0% | |
| AGGGGATCTACCAAAACCCT+TGG | + | chr1.4:16998087-16998106 | MS.gene98978:CDS | 50.0% | |
| CCTGTGAGAAGAGGTTACTG+GGG | + | chr1.4:16997898-16997917 | MS.gene98978:CDS | 50.0% | |
| CCTTGATCTTGGAGGAGGAA+AGG | + | chr1.4:16999713-16999732 | MS.gene98978:CDS | 50.0% | |
| CCTTTCCTCCTCCAAGATCA+AGG | - | chr1.4:16999716-16999735 | None:intergenic | 50.0% | |
| CGAGTCTCCTTCCAGAATTC+AGG | - | chr1.4:16999634-16999653 | None:intergenic | 50.0% | |
| CTGTGAGAAGAGGTTACTGG+GGG | + | chr1.4:16997899-16997918 | MS.gene98978:CDS | 50.0% | |
| CTTTGATGGGAAGAGAGTGG+AGG | - | chr1.4:16997657-16997676 | None:intergenic | 50.0% | |
| GTCGTTGTGGGTGACAACAA+TGG | + | chr1.4:16997790-16997809 | MS.gene98978:CDS | 50.0% | |
| GTTGGCAAAGCCCACAACAA+AGG | + | chr1.4:16999690-16999709 | MS.gene98978:CDS | 50.0% | |
| GTTGTCACCCACAACGACAA+AGG | - | chr1.4:16997788-16997807 | None:intergenic | 50.0% | |
| TCCGAAACCTCTTCCGAATC+CGG | - | chr1.4:16997482-16997501 | None:intergenic | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | + | chr1.4:16998023-16998042 | MS.gene98978:CDS | 50.0% | |
| TGGGTCCCAGTAACAAAGCT+CGG | + | chr1.4:16997586-16997605 | MS.gene98978:CDS | 50.0% | |
| TTTCAGAGTGGGGCCTACTA+AGG | - | chr1.4:16997698-16997717 | None:intergenic | 50.0% | |
| TTTGAACCGGGTTCGTTGAC+CGG | - | chr1.4:16997764-16997783 | None:intergenic | 50.0% | |
| ! | ATGCTAAGAAGCGCGAACAC+AGG | + | chr1.4:16998583-16998602 | MS.gene98978:intron | 50.0% |
| CCCCAGTAACCTCTTCTCAC+AGG | - | chr1.4:16997901-16997920 | None:intergenic | 55.0% | |
| GATCTTGGAGGAGGAAAGGG+CGG | + | chr1.4:16999717-16999736 | MS.gene98978:CDS | 55.0% | |
| GCCACATACTGTGCCGTGTA+AGG | + | chr1.4:16997936-16997955 | MS.gene98978:CDS | 55.0% | |
| GCCGGATTCGGAAGAGGTTT+CGG | + | chr1.4:16997478-16997497 | MS.gene98978:CDS | 55.0% | |
| GGAAGAGGTTTCGGAGATCG+TGG | + | chr1.4:16997487-16997506 | MS.gene98978:CDS | 55.0% | |
| ! | ATACCAGAACCTCTCGGTGC+AGG | - | chr1.4:16998000-16998019 | None:intergenic | 55.0% |
| !! | AGACGGCCGAGCTTTGTTAC+TGG | - | chr1.4:16997595-16997614 | None:intergenic | 55.0% |
| !! | GACGGCCGAGCTTTGTTACT+GGG | - | chr1.4:16997594-16997613 | None:intergenic | 55.0% |
| ACCGGAGACAGAGCCGGATT+CGG | + | chr1.4:16997466-16997485 | MS.gene98978:CDS | 60.0% | |
| ATGGCAGACCGAGGAGCTAC+CGG | + | chr1.4:16997448-16997467 | MS.gene98978:CDS | 60.0% | |
| CGTATGGTTCCTGCACCGAG+AGG | + | chr1.4:16997988-16998007 | MS.gene98978:CDS | 60.0% | |
| CTCGGCCGTCTCGTCAAAGA+AGG | + | chr1.4:16997604-16997623 | MS.gene98978:CDS | 60.0% | |
| CTCTGTCTCCGGTAGCTCCT+CGG | - | chr1.4:16997459-16997478 | None:intergenic | 60.0% | |
| GACAGAGCCGGATTCGGAAG+AGG | + | chr1.4:16997472-16997491 | MS.gene98978:CDS | 60.0% | |
| GGTTTCGGAGATCGTGGTCG+AGG | + | chr1.4:16997493-16997512 | MS.gene98978:CDS | 60.0% | |
| GTTCCTGCACCGAGAGGTTC+TGG | + | chr1.4:16997994-16998013 | MS.gene98978:CDS | 60.0% | |
| TCCGAATCCGGCTCTGTCTC+CGG | - | chr1.4:16997470-16997489 | None:intergenic | 60.0% | |
| TTCGGAGATCGTGGTCGAGG+TGG | + | chr1.4:16997496-16997515 | MS.gene98978:CDS | 60.0% | |
| CCAGAGCCGGTCAACGAACC+CGG | + | chr1.4:16997755-16997774 | MS.gene98978:CDS | 65.0% | |
| GATCGTGGTCGAGGTGGCAG+AGG | + | chr1.4:16997502-16997521 | MS.gene98978:CDS | 65.0% | |
| GGAGCTACCGGAGACAGAGC+CGG | + | chr1.4:16997460-16997479 | MS.gene98978:CDS | 65.0% | |
| AGAGGCGGAGATCGTGGCCG+TGG | + | chr1.4:16997520-16997539 | MS.gene98978:CDS | 70.0% | |
| CGTGGTCGAGGTGGCAGAGG+CGG | + | chr1.4:16997505-16997524 | MS.gene98978:CDS | 70.0% | |
| GGTGGCAGAGGCGGAGATCG+TGG | + | chr1.4:16997514-16997533 | MS.gene98978:CDS | 70.0% | |
| ! | CCGGGTTCGTTGACCGGCTC+TGG | - | chr1.4:16997758-16997777 | None:intergenic | 70.0% |
| !! | AGGCGCTGGCCGTCGTGAAG+AGG | + | chr1.4:16997555-16997574 | MS.gene98978:CDS | 70.0% |
| CACGACGGCCAGCGCCTCTG+CGG | - | chr1.4:16997552-16997571 | None:intergenic | 75.0% | |
| GGCGGAGATCGTGGCCGTGG+AGG | + | chr1.4:16997523-16997542 | MS.gene98978:CDS | 75.0% | |
| ! | CGCCTCTGCGGCGGCCTCCA+CGG | - | chr1.4:16997540-16997559 | None:intergenic | 80.0% |
| ! | GACGGCCAGCGCCTCTGCGG+CGG | - | chr1.4:16997549-16997568 | None:intergenic | 80.0% |
| ! | GGCCGTGGAGGCCGCCGCAG+AGG | + | chr1.4:16997535-16997554 | MS.gene98978:CDS | 85.0% |
| !! | GGAGGCCGCCGCAGAGGCGC+TGG | + | chr1.4:16997541-16997560 | MS.gene98978:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16997448 | 16999747 | 16997448 | ID=MS.gene98978 |
| chr1.4 | mRNA | 16997448 | 16999747 | 16997448 | ID=MS.gene98978.t1;Parent=MS.gene98978 |
| chr1.4 | exon | 16997448 | 16998122 | 16997448 | ID=MS.gene98978.t1.exon1;Parent=MS.gene98978.t1 |
| chr1.4 | CDS | 16997448 | 16998122 | 16997448 | ID=cds.MS.gene98978.t1;Parent=MS.gene98978.t1 |
| chr1.4 | exon | 16999589 | 16999747 | 16999589 | ID=MS.gene98978.t1.exon2;Parent=MS.gene98978.t1 |
| chr1.4 | CDS | 16999589 | 16999747 | 16999589 | ID=cds.MS.gene98978.t1;Parent=MS.gene98978.t1 |
| Gene Sequence |
| Protein sequence |
