Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026524.t1 | XP_013466583.1 | 99.6 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 3.20E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026524.t1 | Q9SCM3 | 92.3 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 1.7e-116 | 420.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026524.t1 | A0A072VF11 | 99.6 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 2.3e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026524 | MS.gene32605 | PPI |
| MS.gene026524 | MS.gene53887 | PPI |
| MS.gene026524 | MS.gene014809 | PPI |
| MS.gene026524 | MS.gene020523 | PPI |
| MS.gene026524 | MS.gene020525 | PPI |
| MS.gene026524 | MS.gene039608 | PPI |
| MS.gene026524 | MS.gene83062 | PPI |
| MS.gene026524 | MS.gene32604 | PPI |
| MS.gene026524 | MS.gene008435 | PPI |
| MS.gene026524 | MS.gene32606 | PPI |
| MS.gene034801 | MS.gene026524 | PPI |
| MS.gene026524 | MS.gene05124 | PPI |
| MS.gene026524 | MS.gene41083 | PPI |
| MS.gene055644 | MS.gene026524 | PPI |
| MS.gene026524 | MS.gene98978 | PPI |
| MS.gene026524 | MS.gene049596 | PPI |
| MS.gene026524 | MS.gene014807 | PPI |
| MS.gene026524 | MS.gene072925 | PPI |
| MS.gene026524 | MS.gene62683 | PPI |
| MS.gene026524 | MS.gene93719 | PPI |
| MS.gene026524 | MS.gene25178 | PPI |
| MS.gene026524 | MS.gene072924 | PPI |
| MS.gene026524 | MS.gene052664 | PPI |
| MS.gene026524 | MS.gene014808 | PPI |
| MS.gene026524 | MS.gene072926 | PPI |
| MS.gene026524 | MS.gene055646 | PPI |
| MS.gene026524 | MS.gene046231 | PPI |
| MS.gene026524 | MS.gene015652 | PPI |
| MS.gene41081 | MS.gene026524 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026524.t1 | MTR_1g032450 | 99.639 | 277 | 1 | 0 | 1 | 277 | 1 | 277 | 0.0 | 558 |
| MS.gene026524.t1 | MTR_8g105340 | 94.662 | 281 | 9 | 3 | 1 | 277 | 1 | 279 | 0.0 | 524 |
| MS.gene026524.t1 | MTR_8g105340 | 98.729 | 236 | 3 | 0 | 42 | 277 | 35 | 270 | 5.24e-173 | 478 |
| MS.gene026524.t1 | MTR_4g088615 | 32.727 | 165 | 94 | 4 | 89 | 244 | 147 | 303 | 2.36e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026524.t1 | AT3G57490 | 92.308 | 221 | 17 | 0 | 43 | 263 | 41 | 261 | 2.31e-152 | 426 |
| MS.gene026524.t1 | AT2G41840 | 90.308 | 227 | 19 | 1 | 42 | 268 | 49 | 272 | 4.66e-151 | 424 |
| MS.gene026524.t1 | AT1G58684 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene026524.t1 | AT1G58983 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene026524.t1 | AT1G59359 | 87.712 | 236 | 26 | 1 | 43 | 275 | 49 | 284 | 2.68e-150 | 422 |
| MS.gene026524.t1 | AT1G58380 | 87.342 | 237 | 27 | 1 | 42 | 275 | 48 | 284 | 3.38e-150 | 421 |
| MS.gene026524.t1 | AT2G33800 | 29.530 | 149 | 97 | 2 | 89 | 237 | 147 | 287 | 2.33e-14 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTGACACCTGAATTC+TGG | 0.269557 | 1.1:+17439068 | MS.gene026524:CDS |
| GCAAACTGCAAAACCTTCTT+AGG | 0.278482 | 1.1:-17437504 | None:intergenic |
| AACGAAATTGCCAAGGGTTT+TGG | 0.290170 | 1.1:-17437565 | None:intergenic |
| GACTGTCTGATGAAGACTTA+TGG | 0.329475 | 1.1:+17439046 | MS.gene026524:CDS |
| CCGGGTTCGTTGACCGGCTC+TGG | 0.332475 | 1.1:-17437223 | None:intergenic |
| CGAGTCTCCTTCCAGAATTC+AGG | 0.345000 | 1.1:-17439079 | None:intergenic |
| GATGATTTGGTGTTCTTTGA+TGG | 0.360586 | 1.1:-17437136 | None:intergenic |
| GTTCCTGCACCGAGAGGTTC+TGG | 0.361388 | 1.1:+17437462 | MS.gene026524:CDS |
| CCAACATATCGGTGTACTCT+TGG | 0.364787 | 1.1:-17439120 | None:intergenic |
| CTACTAAGGTATCGATGATT+TGG | 0.379765 | 1.1:-17437149 | None:intergenic |
| CACAACAAAGGCCTTGATCT+TGG | 0.385331 | 1.1:+17439150 | MS.gene026524:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.392766 | 1.1:+17437479 | MS.gene026524:CDS |
| ACTGTGCCGTGTAAGGTTAC+TGG | 0.397057 | 1.1:+17437411 | MS.gene026524:CDS |
| AAGATCAAGGCCTTTGTTGT+GGG | 0.399949 | 1.1:-17439148 | None:intergenic |
| GGTAGATTTGTTCTAAGCTT+CGG | 0.404639 | 1.1:-17437101 | None:intergenic |
| AGACGGCCGAGCTTTGTTAC+TGG | 0.409258 | 1.1:-17437060 | None:intergenic |
| AACCCTTGGCAATTTCGTTA+AGG | 0.410713 | 1.1:+17437569 | MS.gene026524:CDS |
| GCCGGATTCGGAAGAGGCTT+CGG | 0.412694 | 1.1:+17436946 | MS.gene026524:CDS |
| CAAGATCAAGGCCTTTGTTG+TGG | 0.418524 | 1.1:-17439149 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 1.1:+17437491 | MS.gene026524:CDS |
| TTCAAAGCCTTTGTTGTTGT+GGG | 0.422150 | 1.1:+17437246 | MS.gene026524:CDS |
| TTTGAACCGGGTTCGTTGAC+CGG | 0.422499 | 1.1:-17437229 | None:intergenic |
| CAACAACAAAGGCTTTGAAC+CGG | 0.423689 | 1.1:-17437242 | None:intergenic |
| TTCCTGTGAGAAGAGGTTAC+TGG | 0.425027 | 1.1:+17437364 | MS.gene026524:CDS |
| GGAGGTCGCCGCAGAGGCGC+TGG | 0.430160 | 1.1:+17437009 | MS.gene026524:CDS |
| ATCACTTCGTCTTTCAGAGT+GGG | 0.431632 | 1.1:-17437174 | None:intergenic |
| ACCGGAGACAGAGCCGGATT+CGG | 0.440482 | 1.1:+17436934 | MS.gene026524:CDS |
| TCCGAATCCGGCTCTGTCTC+CGG | 0.446226 | 1.1:-17436935 | None:intergenic |
| CTCTGTCTCCGGTAGCTCCT+CGG | 0.448842 | 1.1:-17436924 | None:intergenic |
| GCTCTGGTTTGTTTCTGAAC+CGG | 0.455324 | 1.1:-17437207 | None:intergenic |
| TCCGAAGCCTCTTCCGAATC+CGG | 0.456291 | 1.1:-17436947 | None:intergenic |
| GTTAGGTGTGAAGTGTAGTA+AGG | 0.467876 | 1.1:+17437290 | MS.gene026524:CDS |
| GACGGCCGAGCTTTGTTACT+GGG | 0.470512 | 1.1:-17437059 | None:intergenic |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.471297 | 1.1:+17437478 | MS.gene026524:CDS |
| CTTGATCTTGGAGGAGGAAA+GGG | 0.473493 | 1.1:+17439162 | MS.gene026524:CDS |
| TGTGGGCTTTGCCAACATAT+CGG | 0.473968 | 1.1:-17439131 | None:intergenic |
| TCCTGTGAGAAGAGGTTACT+GGG | 0.474658 | 1.1:+17437365 | MS.gene026524:CDS |
| GCCACATACTGTGCCGTGTA+AGG | 0.481615 | 1.1:+17437404 | MS.gene026524:CDS |
| TTTCAGAGTGGGGCCTACTA+AGG | 0.486712 | 1.1:-17437163 | None:intergenic |
| GTTCAAAGCCTTTGTTGTTG+TGG | 0.489519 | 1.1:+17437245 | MS.gene026524:CDS |
| CAAATCATCGATACCTTAGT+AGG | 0.501293 | 1.1:+17437150 | MS.gene026524:CDS |
| CTCGGCCGTCTCGTCAAAGA+AGG | 0.518865 | 1.1:+17437072 | MS.gene026524:CDS |
| GGCTTCGGAGATCGTGGTCG+AGG | 0.518966 | 1.1:+17436961 | MS.gene026524:CDS |
| AACAACAAAGGCTTTGAACC+GGG | 0.520283 | 1.1:-17437241 | None:intergenic |
| CCTTTCCTCCTCCAAGATCA+AGG | 0.523177 | 1.1:-17439161 | None:intergenic |
| GACAGAGCCGGATTCGGAAG+AGG | 0.523656 | 1.1:+17436940 | MS.gene026524:CDS |
| AGAGGCGGAGATCGTGGCCG+TGG | 0.527803 | 1.1:+17436988 | MS.gene026524:CDS |
| ACCTTACACGGCACAGTATG+TGG | 0.528460 | 1.1:-17437405 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 1.1:+17437440 | MS.gene026524:CDS |
| CGTGGTCGAGGTGGCAGAGG+CGG | 0.538891 | 1.1:+17436973 | MS.gene026524:CDS |
| CACTTTCCAGTAACCTTACA+CGG | 0.538940 | 1.1:-17437417 | None:intergenic |
| ATACCAGAACCTCTCGGTGC+AGG | 0.541543 | 1.1:-17437465 | None:intergenic |
| ATGGCAGACCGAGGAGCTAC+CGG | 0.543216 | 1.1:+17436916 | MS.gene026524:CDS |
| CATCACTTCGTCTTTCAGAG+TGG | 0.543843 | 1.1:-17437175 | None:intergenic |
| AGGCGCTGGCCGTCGTGAAG+AGG | 0.545371 | 1.1:+17437023 | MS.gene026524:CDS |
| CGCCTCTGCGGCGACCTCCA+CGG | 0.546686 | 1.1:-17437005 | None:intergenic |
| CTTGACACCTGAATTCTGGA+AGG | 0.547375 | 1.1:+17439072 | MS.gene026524:CDS |
| CCTTGATCTTGGAGGAGGAA+AGG | 0.547470 | 1.1:+17439161 | MS.gene026524:CDS |
| AACAAAGGCCTTGATCTTGG+AGG | 0.548080 | 1.1:+17439153 | MS.gene026524:CDS |
| ATATCGGTGTACTCTTGGAA+TGG | 0.552478 | 1.1:-17439115 | None:intergenic |
| GATCGTGGTCGAGGTGGCAG+AGG | 0.555874 | 1.1:+17436970 | MS.gene026524:CDS |
| CCAGAGCCGGTCAACGAACC+CGG | 0.560802 | 1.1:+17437223 | MS.gene026524:CDS |
| ATGATTTGGTGTTCTTTGAT+GGG | 0.563159 | 1.1:-17437135 | None:intergenic |
| AGGGGATCTACCAAAACCCT+TGG | 0.565634 | 1.1:+17437555 | MS.gene026524:CDS |
| GGAGCTACCGGAGACAGAGC+CGG | 0.566711 | 1.1:+17436928 | MS.gene026524:CDS |
| AAAGGCCTTGATCTTGGAGG+AGG | 0.570185 | 1.1:+17439156 | MS.gene026524:CDS |
| TCACTTCGTCTTTCAGAGTG+GGG | 0.570297 | 1.1:-17437173 | None:intergenic |
| CCCCAGTAACCTCTTCTCAC+AGG | 0.570541 | 1.1:-17437366 | None:intergenic |
| CCAAGAGTACACCGATATGT+TGG | 0.570916 | 1.1:+17439120 | MS.gene026524:CDS |
| AACAATGGTCATGTTGGGTT+AGG | 0.571470 | 1.1:+17437273 | MS.gene026524:CDS |
| GAAGTTGCTACTGCAATTCG+CGG | 0.571598 | 1.1:+17437312 | MS.gene026524:CDS |
| TGGGTCCCAGTAACAAAGCT+CGG | 0.574303 | 1.1:+17437054 | MS.gene026524:CDS |
| GTGACAACAATGGTCATGTT+GGG | 0.588102 | 1.1:+17437268 | MS.gene026524:CDS |
| GGTGACAACAATGGTCATGT+TGG | 0.588840 | 1.1:+17437267 | MS.gene026524:CDS |
| GGTGGCAGAGGCGGAGATCG+TGG | 0.589603 | 1.1:+17436982 | MS.gene026524:CDS |
| GGCCGTGGAGGTCGCCGCAG+AGG | 0.598782 | 1.1:+17437003 | MS.gene026524:CDS |
| GTTCTTTGATGGGAAGAGAG+TGG | 0.601081 | 1.1:-17437125 | None:intergenic |
| AGACCTTAACGAAATTGCCA+AGG | 0.604222 | 1.1:-17437572 | None:intergenic |
| GTTGTCACCCACAACAACAA+AGG | 0.604712 | 1.1:-17437253 | None:intergenic |
| CTTTGATGGGAAGAGAGTGG+AGG | 0.605151 | 1.1:-17437122 | None:intergenic |
| CGAAGTGATGAAAATCATGC+CGG | 0.605193 | 1.1:+17437188 | MS.gene026524:CDS |
| GTTCAGAAACAAACCAGAGC+CGG | 0.607188 | 1.1:+17437210 | MS.gene026524:CDS |
| GTTGGCAAAGCCCACAACAA+AGG | 0.608366 | 1.1:+17439138 | MS.gene026524:CDS |
| GACCTTAACGAAATTGCCAA+GGG | 0.610712 | 1.1:-17437571 | None:intergenic |
| CACGACGGCCAGCGCCTCTG+CGG | 0.615990 | 1.1:-17437017 | None:intergenic |
| TTCGGAGATCGTGGTCGAGG+TGG | 0.620909 | 1.1:+17436964 | MS.gene026524:CDS |
| GTTGTTGTGGGTGACAACAA+TGG | 0.621205 | 1.1:+17437258 | MS.gene026524:CDS |
| AGTGTGATTCCTGTGAGAAG+AGG | 0.634613 | 1.1:+17437357 | MS.gene026524:CDS |
| GGAAGAGGCTTCGGAGATCG+TGG | 0.636414 | 1.1:+17436955 | MS.gene026524:CDS |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.643088 | 1.1:+17437420 | MS.gene026524:CDS |
| GCAACAATACCAGAACCTCT+CGG | 0.646729 | 1.1:-17437471 | None:intergenic |
| CGTATGGTTCCTGCACCGAG+AGG | 0.664454 | 1.1:+17437456 | MS.gene026524:CDS |
| GGCGGAGATCGTGGCCGTGG+AGG | 0.667002 | 1.1:+17436991 | MS.gene026524:CDS |
| GATCTTGGAGGAGGAAAGGG+CGG | 0.671501 | 1.1:+17439165 | MS.gene026524:CDS |
| CTGTGAGAAGAGGTTACTGG+GGG | 0.685323 | 1.1:+17437367 | MS.gene026524:CDS |
| CAACCAACAATGGCAGACCG+AGG | 0.687866 | 1.1:+17436907 | None:intergenic |
| CCTGTGAGAAGAGGTTACTG+GGG | 0.696718 | 1.1:+17437366 | MS.gene026524:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAATTAAAATATGA+AGG | - | chr1.1:17437609-17437628 | None:intergenic | 10.0% |
| !! | AATAAATGAATATATAAAAC+AGG | - | chr1.1:17437768-17437787 | None:intergenic | 10.0% |
| !!! | TATTTCAATATTTTTTTTGA+AGG | + | chr1.1:17438451-17438470 | MS.gene026524:intron | 10.0% |
| !! | TCAATTGTATATTATAAACA+GGG | + | chr1.1:17438724-17438743 | MS.gene026524:intron | 15.0% |
| !! | TTCAATTGTATATTATAAAC+AGG | + | chr1.1:17438723-17438742 | MS.gene026524:intron | 15.0% |
| !!! | ATTGATTTGAAAATAAATGA+TGG | + | chr1.1:17438425-17438444 | MS.gene026524:intron | 15.0% |
| !! | AATTAATCATTTGCAAAACT+TGG | + | chr1.1:17438064-17438083 | MS.gene026524:intron | 20.0% |
| !! | AATTTCAAAATATCATTCCA+AGG | - | chr1.1:17438752-17438771 | None:intergenic | 20.0% |
| !! | ATTTCAAAATATCATTCCAA+GGG | - | chr1.1:17438751-17438770 | None:intergenic | 20.0% |
| !! | CAATTGTATATTATAAACAG+GGG | + | chr1.1:17438725-17438744 | MS.gene026524:intron | 20.0% |
| !! | TCTTATTGTGAGTAAAATTT+AGG | + | chr1.1:17438380-17438399 | MS.gene026524:intron | 20.0% |
| !!! | AATCCATTTAAAATGTAAAG+TGG | - | chr1.1:17438561-17438580 | None:intergenic | 20.0% |
| !!! | ATCCATTTAAAATGTAAAGT+GGG | - | chr1.1:17438560-17438579 | None:intergenic | 20.0% |
| !!! | ATCTTTAATTTGTTCATCAA+TGG | + | chr1.1:17438526-17438545 | MS.gene026524:intron | 20.0% |
| !!! | CAACTAATAAAGTTTTTATG+CGG | - | chr1.1:17438846-17438865 | None:intergenic | 20.0% |
| !!! | TCATAGAATTTAACTTGAAA+TGG | + | chr1.1:17438603-17438622 | MS.gene026524:intron | 20.0% |
| !!! | TTAATGCTATTTATTTTTGC+AGG | + | chr1.1:17439015-17439034 | MS.gene026524:intron | 20.0% |
| !!! | TTTATTTGAGTTGTATAATG+TGG | + | chr1.1:17437782-17437801 | MS.gene026524:intron | 20.0% |
| ! | AATAGATAGATAGAAACAAG+TGG | - | chr1.1:17438236-17438255 | None:intergenic | 25.0% |
| ! | ATTATAATCAACAGACTTGT+TGG | + | chr1.1:17438660-17438679 | MS.gene026524:intron | 25.0% |
| ! | CATTTGTTTGTATAATCAAG+TGG | + | chr1.1:17438803-17438822 | MS.gene026524:intron | 25.0% |
| ! | GTAAATAGAAGCTAGATAAA+TGG | + | chr1.1:17438271-17438290 | MS.gene026524:intron | 25.0% |
| ! | TTTAATGTTCTTAACCACAA+GGG | - | chr1.1:17438779-17438798 | None:intergenic | 25.0% |
| !! | TACCCACTTTACATTTTAAA+TGG | + | chr1.1:17438555-17438574 | MS.gene026524:intron | 25.0% |
| !! | TTATAATCAACAGACTTGTT+GGG | + | chr1.1:17438661-17438680 | MS.gene026524:intron | 25.0% |
| !! | TTTTAATGTTCTTAACCACA+AGG | - | chr1.1:17438780-17438799 | None:intergenic | 25.0% |
| !!! | ATGATGTTTTTACTTCTTCA+AGG | + | chr1.1:17437535-17437554 | MS.gene026524:CDS | 25.0% |
| !!! | TGATGTTTTTACTTCTTCAA+GGG | + | chr1.1:17437536-17437555 | MS.gene026524:CDS | 25.0% |
| !!! | TTTGTGTTGTTTTGTTTCAT+TGG | + | chr1.1:17438896-17438915 | MS.gene026524:intron | 25.0% |
| AAAATAGCGAAGTCACTAAT+GGG | + | chr1.1:17438198-17438217 | MS.gene026524:intron | 30.0% | |
| AAGCTATATTGGAGAACTTA+TGG | + | chr1.1:17437885-17437904 | MS.gene026524:intron | 30.0% | |
| ATCTATCTATTTCCCTTGAA+TGG | + | chr1.1:17438245-17438264 | MS.gene026524:intron | 30.0% | |
| CCAATCATATTGAAATATCC+AGG | - | chr1.1:17438479-17438498 | None:intergenic | 30.0% | |
| CCTGGATATTTCAATATGAT+TGG | + | chr1.1:17438476-17438495 | MS.gene026524:intron | 30.0% | |
| CTATCAATTTACGAGATAGA+TGG | + | chr1.1:17438146-17438165 | MS.gene026524:intron | 30.0% | |
| GATAAGTTGTTTATCCAAAC+AGG | - | chr1.1:17437809-17437828 | None:intergenic | 30.0% | |
| TAAAATAGCGAAGTCACTAA+TGG | + | chr1.1:17438197-17438216 | MS.gene026524:intron | 30.0% | |
| TCTATTTACTGTCCATTCAA+GGG | - | chr1.1:17438260-17438279 | None:intergenic | 30.0% | |
| TTCTATTTACTGTCCATTCA+AGG | - | chr1.1:17438261-17438280 | None:intergenic | 30.0% | |
| !! | ATGATTTGGTGTTCTTTGAT+GGG | - | chr1.1:17437138-17437157 | None:intergenic | 30.0% |
| !! | GATGTTTTTACTTCTTCAAG+GGG | + | chr1.1:17437537-17437556 | MS.gene026524:CDS | 30.0% |
| !! | GTTTCATTGGTTTATAGTTC+TGG | + | chr1.1:17438909-17438928 | MS.gene026524:intron | 30.0% |
| !! | TAGTGACTTCGCTATTTTAA+AGG | - | chr1.1:17438196-17438215 | None:intergenic | 30.0% |
| !!! | ATATTTTTTTTGAAGGAGCC+TGG | + | chr1.1:17438458-17438477 | MS.gene026524:intron | 30.0% |
| !!! | GCTGTTTTGATAAGCTATAT+TGG | + | chr1.1:17437874-17437893 | MS.gene026524:intron | 30.0% |
| AGAAACAAGTGGAAGATTAG+AGG | - | chr1.1:17438225-17438244 | None:intergenic | 35.0% | |
| ATTACAGGGTCTATTGTGAT+TGG | - | chr1.1:17438013-17438032 | None:intergenic | 35.0% | |
| CAAACACGAGTAACAAATTC+TGG | - | chr1.1:17438967-17438986 | None:intergenic | 35.0% | |
| CAAATCATCGATACCTTAGT+AGG | + | chr1.1:17437150-17437169 | MS.gene026524:CDS | 35.0% | |
| CATGCTTTCAAATGATGTGT+TGG | + | chr1.1:17438316-17438335 | MS.gene026524:intron | 35.0% | |
| GACATAAGTGATAGGTTAGT+GGG | + | chr1.1:17438168-17438187 | MS.gene026524:intron | 35.0% | |
| GATAGATGGACATAAGTGAT+AGG | + | chr1.1:17438160-17438179 | MS.gene026524:intron | 35.0% | |
| GCATAAATAGATTCGATTGC+AGG | - | chr1.1:17438945-17438964 | None:intergenic | 35.0% | |
| TATGTGTGTACAAACTTGAG+TGG | + | chr1.1:17438353-17438372 | MS.gene026524:intron | 35.0% | |
| TCGTGAAGAGGAAGAAAAAT+GGG | + | chr1.1:17437035-17437054 | MS.gene026524:CDS | 35.0% | |
| TGGTGTGATTATATGTAGCT+AGG | + | chr1.1:17438084-17438103 | MS.gene026524:intron | 35.0% | |
| TTGTATAATGTGGACCTGTT+TGG | + | chr1.1:17437792-17437811 | MS.gene026524:intron | 35.0% | |
| ! | ATTTTTCTTCCTCTTCACGA+CGG | - | chr1.1:17437035-17437054 | None:intergenic | 35.0% |
| ! | CATCATTTGAAAGCATGTCT+AGG | - | chr1.1:17438313-17438332 | None:intergenic | 35.0% |
| ! | GGTAGATTTGTTCTAAGCTT+CGG | - | chr1.1:17437104-17437123 | None:intergenic | 35.0% |
| !! | ATGATGTGTTGGTGCTAAAT+AGG | + | chr1.1:17438327-17438346 | MS.gene026524:intron | 35.0% |
| !! | CTACTAAGGTATCGATGATT+TGG | - | chr1.1:17437152-17437171 | None:intergenic | 35.0% |
| !! | GATGATTTGGTGTTCTTTGA+TGG | - | chr1.1:17437139-17437158 | None:intergenic | 35.0% |
| !! | TTCAAAGCCTTTGTTGTTGT+GGG | + | chr1.1:17437246-17437265 | MS.gene026524:CDS | 35.0% |
| !!! | TTTTGAAATTGACTCCCTTG+TGG | + | chr1.1:17438762-17438781 | MS.gene026524:intron | 35.0% |
| AACAATGGTCATGTTGGGTT+AGG | + | chr1.1:17437273-17437292 | MS.gene026524:CDS | 40.0% | |
| AACCCTTGGCAATTTCGTTA+AGG | + | chr1.1:17437569-17437588 | MS.gene026524:CDS | 40.0% | |
| AGACCTTAACGAAATTGCCA+AGG | - | chr1.1:17437575-17437594 | None:intergenic | 40.0% | |
| ATATCGGTGTACTCTTGGAA+TGG | - | chr1.1:17439118-17439137 | None:intergenic | 40.0% | |
| ATATTATAAACAGGGGCCCT+TGG | + | chr1.1:17438732-17438751 | MS.gene026524:intron | 40.0% | |
| ATCACTTCGTCTTTCAGAGT+GGG | - | chr1.1:17437177-17437196 | None:intergenic | 40.0% | |
| CACTTTCCAGTAACCTTACA+CGG | - | chr1.1:17437420-17437439 | None:intergenic | 40.0% | |
| CGAAGTGATGAAAATCATGC+CGG | + | chr1.1:17437188-17437207 | MS.gene026524:CDS | 40.0% | |
| GACCTTAACGAAATTGCCAA+GGG | - | chr1.1:17437574-17437593 | None:intergenic | 40.0% | |
| GACTGTCTGATGAAGACTTA+TGG | + | chr1.1:17439046-17439065 | MS.gene026524:CDS | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | - | chr1.1:17437507-17437526 | None:intergenic | 40.0% | |
| GGACATAAGTGATAGGTTAG+TGG | + | chr1.1:17438167-17438186 | MS.gene026524:intron | 40.0% | |
| GGTTAGTGACAGTGTTAGTT+TGG | + | chr1.1:17438105-17438124 | MS.gene026524:intron | 40.0% | |
| GTCATATATTGAGACAGTGC+TGG | + | chr1.1:17438865-17438884 | MS.gene026524:intron | 40.0% | |
| GTCGTGAAGAGGAAGAAAAA+TGG | + | chr1.1:17437034-17437053 | MS.gene026524:CDS | 40.0% | |
| GTGACAACAATGGTCATGTT+GGG | + | chr1.1:17437268-17437287 | MS.gene026524:CDS | 40.0% | |
| GTTACTGGGGGAATAAGATT+GGG | + | chr1.1:17437379-17437398 | MS.gene026524:CDS | 40.0% | |
| GTTAGGTGTGAAGTGTAGTA+AGG | + | chr1.1:17437290-17437309 | MS.gene026524:CDS | 40.0% | |
| GTTTCTTGACACCTGAATTC+TGG | + | chr1.1:17439068-17439087 | MS.gene026524:CDS | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | + | chr1.1:17437420-17437439 | MS.gene026524:CDS | 40.0% | |
| TTCTGGTATTGTTGCTGCTA+GGG | + | chr1.1:17437479-17437498 | MS.gene026524:CDS | 40.0% | |
| ! | AACGAAATTGCCAAGGGTTT+TGG | - | chr1.1:17437568-17437587 | None:intergenic | 40.0% |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | + | chr1.1:17437507-17437526 | MS.gene026524:CDS | 40.0% |
| ! | AAGATCAAGGCCTTTGTTGT+GGG | - | chr1.1:17439151-17439170 | None:intergenic | 40.0% |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | + | chr1.1:17437440-17437459 | MS.gene026524:CDS | 40.0% |
| ! | TTTTGCCTTCTTTGACGAGA+CGG | - | chr1.1:17437080-17437099 | None:intergenic | 40.0% |
| !! | AACAACAAAGGCTTTGAACC+GGG | - | chr1.1:17437244-17437263 | None:intergenic | 40.0% |
| !! | CAACAACAAAGGCTTTGAAC+CGG | - | chr1.1:17437245-17437264 | None:intergenic | 40.0% |
| !! | GTTCAAAGCCTTTGTTGTTG+TGG | + | chr1.1:17437245-17437264 | MS.gene026524:CDS | 40.0% |
| AACAAAGGCCTTGATCTTGG+AGG | + | chr1.1:17439153-17439172 | MS.gene026524:CDS | 45.0% | |
| AGTGTGATTCCTGTGAGAAG+AGG | + | chr1.1:17437357-17437376 | MS.gene026524:CDS | 45.0% | |
| CAAGATCAAGGCCTTTGTTG+TGG | - | chr1.1:17439152-17439171 | None:intergenic | 45.0% | |
| CACAACAAAGGCCTTGATCT+TGG | + | chr1.1:17439150-17439169 | MS.gene026524:CDS | 45.0% | |
| CATCACTTCGTCTTTCAGAG+TGG | - | chr1.1:17437178-17437197 | None:intergenic | 45.0% | |
| CCAACATATCGGTGTACTCT+TGG | - | chr1.1:17439123-17439142 | None:intergenic | 45.0% | |
| CTTGACACCTGAATTCTGGA+AGG | + | chr1.1:17439072-17439091 | MS.gene026524:CDS | 45.0% | |
| CTTGATCTTGGAGGAGGAAA+GGG | + | chr1.1:17439162-17439181 | MS.gene026524:CDS | 45.0% | |
| GAAGTTGCTACTGCAATTCG+CGG | + | chr1.1:17437312-17437331 | MS.gene026524:CDS | 45.0% | |
| GCAACAATACCAGAACCTCT+CGG | - | chr1.1:17437474-17437493 | None:intergenic | 45.0% | |
| GGTGACAACAATGGTCATGT+TGG | + | chr1.1:17437267-17437286 | MS.gene026524:CDS | 45.0% | |
| GGTTACTGGGGGAATAAGAT+TGG | + | chr1.1:17437378-17437397 | MS.gene026524:CDS | 45.0% | |
| GTTCAGAAACAAACCAGAGC+CGG | + | chr1.1:17437210-17437229 | MS.gene026524:CDS | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | + | chr1.1:17437478-17437497 | MS.gene026524:CDS | 45.0% | |
| GTTCTTTGATGGGAAGAGAG+TGG | - | chr1.1:17437128-17437147 | None:intergenic | 45.0% | |
| GTTGTCACCCACAACAACAA+AGG | - | chr1.1:17437256-17437275 | None:intergenic | 45.0% | |
| GTTGTTGTGGGTGACAACAA+TGG | + | chr1.1:17437258-17437277 | MS.gene026524:CDS | 45.0% | |
| TCACTTCGTCTTTCAGAGTG+GGG | - | chr1.1:17437176-17437195 | None:intergenic | 45.0% | |
| TCCTGTGAGAAGAGGTTACT+GGG | + | chr1.1:17437365-17437384 | MS.gene026524:CDS | 45.0% | |
| TCGCGCTTCTTAGCATTACA+GGG | - | chr1.1:17438027-17438046 | None:intergenic | 45.0% | |
| TGTGGGCTTTGCCAACATAT+CGG | - | chr1.1:17439134-17439153 | None:intergenic | 45.0% | |
| TTCCTGTGAGAAGAGGTTAC+TGG | + | chr1.1:17437364-17437383 | MS.gene026524:CDS | 45.0% | |
| TTCGCGCTTCTTAGCATTAC+AGG | - | chr1.1:17438028-17438047 | None:intergenic | 45.0% | |
| ! | CCAAGAGTACACCGATATGT+TGG | + | chr1.1:17439120-17439139 | MS.gene026524:CDS | 45.0% |
| !! | GCTCTGGTTTGTTTCTGAAC+CGG | - | chr1.1:17437210-17437229 | None:intergenic | 45.0% |
| AAAGGCCTTGATCTTGGAGG+AGG | + | chr1.1:17439156-17439175 | MS.gene026524:CDS | 50.0% | |
| ACCTTACACGGCACAGTATG+TGG | - | chr1.1:17437408-17437427 | None:intergenic | 50.0% | |
| ACTGTGCCGTGTAAGGTTAC+TGG | + | chr1.1:17437411-17437430 | MS.gene026524:CDS | 50.0% | |
| AGGGGATCTACCAAAACCCT+TGG | + | chr1.1:17437555-17437574 | MS.gene026524:CDS | 50.0% | |
| CCTGTGAGAAGAGGTTACTG+GGG | + | chr1.1:17437366-17437385 | MS.gene026524:CDS | 50.0% | |
| CCTTGATCTTGGAGGAGGAA+AGG | + | chr1.1:17439161-17439180 | MS.gene026524:CDS | 50.0% | |
| CCTTTCCTCCTCCAAGATCA+AGG | - | chr1.1:17439164-17439183 | None:intergenic | 50.0% | |
| CGAGTCTCCTTCCAGAATTC+AGG | - | chr1.1:17439082-17439101 | None:intergenic | 50.0% | |
| CTGTGAGAAGAGGTTACTGG+GGG | + | chr1.1:17437367-17437386 | MS.gene026524:CDS | 50.0% | |
| CTTTGATGGGAAGAGAGTGG+AGG | - | chr1.1:17437125-17437144 | None:intergenic | 50.0% | |
| GTTGGCAAAGCCCACAACAA+AGG | + | chr1.1:17439138-17439157 | MS.gene026524:CDS | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | + | chr1.1:17437491-17437510 | MS.gene026524:CDS | 50.0% | |
| TGGGTCCCAGTAACAAAGCT+CGG | + | chr1.1:17437054-17437073 | MS.gene026524:CDS | 50.0% | |
| TTTCAGAGTGGGGCCTACTA+AGG | - | chr1.1:17437166-17437185 | None:intergenic | 50.0% | |
| TTTGAACCGGGTTCGTTGAC+CGG | - | chr1.1:17437232-17437251 | None:intergenic | 50.0% | |
| ! | ATGCTAAGAAGCGCGAACAC+AGG | + | chr1.1:17438031-17438050 | MS.gene026524:intron | 50.0% |
| CCCCAGTAACCTCTTCTCAC+AGG | - | chr1.1:17437369-17437388 | None:intergenic | 55.0% | |
| GATCTTGGAGGAGGAAAGGG+CGG | + | chr1.1:17439165-17439184 | MS.gene026524:CDS | 55.0% | |
| GCCACATACTGTGCCGTGTA+AGG | + | chr1.1:17437404-17437423 | MS.gene026524:CDS | 55.0% | |
| TCCGAAGCCTCTTCCGAATC+CGG | - | chr1.1:17436950-17436969 | None:intergenic | 55.0% | |
| ! | ATACCAGAACCTCTCGGTGC+AGG | - | chr1.1:17437468-17437487 | None:intergenic | 55.0% |
| !! | AGACGGCCGAGCTTTGTTAC+TGG | - | chr1.1:17437063-17437082 | None:intergenic | 55.0% |
| !! | GACGGCCGAGCTTTGTTACT+GGG | - | chr1.1:17437062-17437081 | None:intergenic | 55.0% |
| ACCGGAGACAGAGCCGGATT+CGG | + | chr1.1:17436934-17436953 | MS.gene026524:CDS | 60.0% | |
| ATGGCAGACCGAGGAGCTAC+CGG | + | chr1.1:17436916-17436935 | MS.gene026524:CDS | 60.0% | |
| CGTATGGTTCCTGCACCGAG+AGG | + | chr1.1:17437456-17437475 | MS.gene026524:CDS | 60.0% | |
| CTCGGCCGTCTCGTCAAAGA+AGG | + | chr1.1:17437072-17437091 | MS.gene026524:CDS | 60.0% | |
| CTCTGTCTCCGGTAGCTCCT+CGG | - | chr1.1:17436927-17436946 | None:intergenic | 60.0% | |
| GACAGAGCCGGATTCGGAAG+AGG | + | chr1.1:17436940-17436959 | MS.gene026524:CDS | 60.0% | |
| GCCGGATTCGGAAGAGGCTT+CGG | + | chr1.1:17436946-17436965 | MS.gene026524:CDS | 60.0% | |
| GGAAGAGGCTTCGGAGATCG+TGG | + | chr1.1:17436955-17436974 | MS.gene026524:CDS | 60.0% | |
| GTTCCTGCACCGAGAGGTTC+TGG | + | chr1.1:17437462-17437481 | MS.gene026524:CDS | 60.0% | |
| TCCGAATCCGGCTCTGTCTC+CGG | - | chr1.1:17436938-17436957 | None:intergenic | 60.0% | |
| TTCGGAGATCGTGGTCGAGG+TGG | + | chr1.1:17436964-17436983 | MS.gene026524:CDS | 60.0% | |
| CCAGAGCCGGTCAACGAACC+CGG | + | chr1.1:17437223-17437242 | MS.gene026524:CDS | 65.0% | |
| GATCGTGGTCGAGGTGGCAG+AGG | + | chr1.1:17436970-17436989 | MS.gene026524:CDS | 65.0% | |
| GGAGCTACCGGAGACAGAGC+CGG | + | chr1.1:17436928-17436947 | MS.gene026524:CDS | 65.0% | |
| GGCTTCGGAGATCGTGGTCG+AGG | + | chr1.1:17436961-17436980 | MS.gene026524:CDS | 65.0% | |
| AGAGGCGGAGATCGTGGCCG+TGG | + | chr1.1:17436988-17437007 | MS.gene026524:CDS | 70.0% | |
| CGTGGTCGAGGTGGCAGAGG+CGG | + | chr1.1:17436973-17436992 | MS.gene026524:CDS | 70.0% | |
| GGTGGCAGAGGCGGAGATCG+TGG | + | chr1.1:17436982-17437001 | MS.gene026524:CDS | 70.0% | |
| ! | CCGGGTTCGTTGACCGGCTC+TGG | - | chr1.1:17437226-17437245 | None:intergenic | 70.0% |
| !! | AGGCGCTGGCCGTCGTGAAG+AGG | + | chr1.1:17437023-17437042 | MS.gene026524:CDS | 70.0% |
| CACGACGGCCAGCGCCTCTG+CGG | - | chr1.1:17437020-17437039 | None:intergenic | 75.0% | |
| CGCCTCTGCGGCGACCTCCA+CGG | - | chr1.1:17437008-17437027 | None:intergenic | 75.0% | |
| GGCGGAGATCGTGGCCGTGG+AGG | + | chr1.1:17436991-17437010 | MS.gene026524:CDS | 75.0% | |
| ! | GGCCGTGGAGGTCGCCGCAG+AGG | + | chr1.1:17437003-17437022 | MS.gene026524:CDS | 80.0% |
| !! | GGAGGTCGCCGCAGAGGCGC+TGG | + | chr1.1:17437009-17437028 | MS.gene026524:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 17436916 | 17439195 | 17436916 | ID=MS.gene026524 |
| chr1.1 | mRNA | 17436916 | 17439195 | 17436916 | ID=MS.gene026524.t1;Parent=MS.gene026524 |
| chr1.1 | exon | 17436916 | 17437590 | 17436916 | ID=MS.gene026524.t1.exon1;Parent=MS.gene026524.t1 |
| chr1.1 | CDS | 17436916 | 17437590 | 17436916 | ID=cds.MS.gene026524.t1;Parent=MS.gene026524.t1 |
| chr1.1 | exon | 17439037 | 17439195 | 17439037 | ID=MS.gene026524.t1.exon2;Parent=MS.gene026524.t1 |
| chr1.1 | CDS | 17439037 | 17439195 | 17439037 | ID=cds.MS.gene026524.t1;Parent=MS.gene026524.t1 |
| Gene Sequence |
| Protein sequence |
