Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020525.t1 | XP_003630949.1 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 6.20E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020525.t1 | Q9SCM3 | 92.3 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 1.3e-116 | 420.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020525.t1 | G7LAL7 | 99.6 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 4.4e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020525 | MS.gene049596 | PPI |
| MS.gene020525 | MS.gene014807 | PPI |
| MS.gene020525 | MS.gene072925 | PPI |
| MS.gene020525 | MS.gene05124 | PPI |
| MS.gene41081 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene62683 | PPI |
| MS.gene020525 | MS.gene93719 | PPI |
| MS.gene008435 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene25178 | PPI |
| MS.gene020525 | MS.gene072924 | PPI |
| MS.gene25178 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene052664 | PPI |
| MS.gene020525 | MS.gene014808 | PPI |
| MS.gene026524 | MS.gene020525 | PPI |
| MS.gene034801 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene072926 | PPI |
| MS.gene020525 | MS.gene055646 | PPI |
| MS.gene020525 | MS.gene046231 | PPI |
| MS.gene020525 | MS.gene015652 | PPI |
| MS.gene020525 | MS.gene32605 | PPI |
| MS.gene055644 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene014809 | PPI |
| MS.gene020525 | MS.gene020523 | PPI |
| MS.gene020525 | MS.gene039608 | PPI |
| MS.gene020525 | MS.gene83062 | PPI |
| MS.gene020525 | MS.gene32604 | PPI |
| MS.gene020525 | MS.gene32606 | PPI |
| MS.gene020525 | MS.gene53887 | PPI |
| MS.gene41083 | MS.gene020525 | PPI |
| MS.gene020525 | MS.gene98978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020525.t1 | MTR_8g105340 | 99.642 | 279 | 1 | 0 | 1 | 279 | 1 | 279 | 0.0 | 559 |
| MS.gene020525.t1 | MTR_8g105340 | 96.416 | 279 | 1 | 1 | 1 | 279 | 1 | 270 | 0.0 | 535 |
| MS.gene020525.t1 | MTR_1g032450 | 94.662 | 281 | 9 | 3 | 1 | 279 | 1 | 277 | 0.0 | 524 |
| MS.gene020525.t1 | MTR_4g088615 | 32.727 | 165 | 94 | 4 | 91 | 246 | 147 | 303 | 3.92e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020525.t1 | AT3G57490 | 92.308 | 221 | 17 | 0 | 45 | 265 | 41 | 261 | 3.14e-152 | 426 |
| MS.gene020525.t1 | AT2G41840 | 90.308 | 227 | 19 | 1 | 44 | 270 | 49 | 272 | 5.33e-151 | 423 |
| MS.gene020525.t1 | AT1G58684 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020525.t1 | AT1G58983 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020525.t1 | AT1G59359 | 90.222 | 225 | 22 | 0 | 45 | 269 | 49 | 273 | 3.13e-150 | 421 |
| MS.gene020525.t1 | AT1G58380 | 89.823 | 226 | 23 | 0 | 44 | 269 | 48 | 273 | 4.80e-150 | 421 |
| MS.gene020525.t1 | AT2G33800 | 29.530 | 149 | 97 | 2 | 91 | 239 | 147 | 287 | 3.67e-14 | 71.6 |
Find 98 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCTCCTTCCAGAATTC+AGG | 0.269661 | 4.1:+1572011 | None:intergenic |
| TCCAGTGAGGAGAGGTTATT+GGG | 0.276824 | 4.1:-1573044 | MS.gene020525:CDS |
| CCTCCGCCCTTTCTTCTTCA+AGG | 0.277743 | 4.1:+1571922 | None:intergenic |
| GACGAAATTTCCAAGGGTTT+TGG | 0.292589 | 4.1:+1572844 | None:intergenic |
| GCAAACTGCAAAACCTTCTT+AGG | 0.306095 | 4.1:+1572905 | None:intergenic |
| ACTGTTCCTTGTAAGGTTAC+TGG | 0.306147 | 4.1:-1572998 | MS.gene020525:CDS |
| GTTCCTGCTCCTCGGGGTTC+TGG | 0.312116 | 4.1:-1572947 | MS.gene020525:CDS |
| TTCCAGTGAGGAGAGGTTAT+TGG | 0.329562 | 4.1:-1573045 | MS.gene020525:CDS |
| GGTGGAGATCGTGGTGGTTT+TGG | 0.346359 | 4.1:-1573487 | MS.gene020525:CDS |
| ATACTCTTGGAATGGAGATT+TGG | 0.351395 | 4.1:+1571983 | None:intergenic |
| TCGTATGGTTCCTGCTCCTC+GGG | 0.371220 | 4.1:-1572954 | MS.gene020525:CDS |
| TTCTGGTATTGTTGCTGCTA+GGG | 0.377258 | 4.1:-1572930 | MS.gene020525:CDS |
| TTCGTATGGTTCCTGCTCCT+CGG | 0.380151 | 4.1:-1572955 | MS.gene020525:CDS |
| GCCCGGGTTTGTTTCTGAAC+CGG | 0.384932 | 4.1:+1573202 | None:intergenic |
| GCCACACACTGTTCCTTGTA+AGG | 0.396169 | 4.1:-1573005 | MS.gene020525:CDS |
| ATGATTTGATGCTCCTTGAT+TGG | 0.409887 | 4.1:+1573274 | None:intergenic |
| CCACAACAAAAGCCTTGAAC+CGG | 0.415813 | 4.1:+1573167 | None:intergenic |
| TGCTGCTAGGGTTCCTAAGA+AGG | 0.419749 | 4.1:-1572918 | MS.gene020525:CDS |
| GACGCGAAGAAGAAGAGAAA+TGG | 0.420048 | 4.1:-1573375 | MS.gene020525:CDS |
| GATAGATCTGTTCAAGGCTT+CGG | 0.428013 | 4.1:+1573308 | None:intergenic |
| CCAACAGATCAGTATACTCT+TGG | 0.439572 | 4.1:+1571970 | None:intergenic |
| TGATTTGATGCTCCTTGATT+GGG | 0.442318 | 4.1:+1573275 | None:intergenic |
| CTTTGATCCTTGAAGAAGAA+AGG | 0.447076 | 4.1:-1571929 | MS.gene020525:CDS |
| CACTTTCCAGTAACCTTACA+AGG | 0.448418 | 4.1:+1572992 | None:intergenic |
| CGTGGTGGTCGTCGTAGAGC+TGG | 0.451382 | 4.1:-1573403 | MS.gene020525:CDS |
| GTTCTGGTATTGTTGCTGCT+AGG | 0.452667 | 4.1:-1572931 | MS.gene020525:CDS |
| CCCGGGCTGGTCAGAGAACC+CGG | 0.453571 | 4.1:-1573186 | MS.gene020525:CDS |
| TGGTCAGAGAACCCGGTTCA+AGG | 0.464046 | 4.1:-1573179 | MS.gene020525:CDS |
| CCGGGTTCTCTGACCAGCCC+GGG | 0.469594 | 4.1:+1573186 | None:intergenic |
| ACCGGGTTCTCTGACCAGCC+CGG | 0.472370 | 4.1:+1573185 | None:intergenic |
| AATGAAGATAGATCTGTTCA+AGG | 0.480151 | 4.1:+1573302 | None:intergenic |
| ATACCAGAACCCCGAGGAGC+AGG | 0.487255 | 4.1:+1572944 | None:intergenic |
| CAAAGCCTTAGCAGTTGGCT+TGG | 0.489306 | 4.1:+1571947 | None:intergenic |
| AACAATGGTCACGTTGGTCT+TGG | 0.495777 | 4.1:-1573136 | MS.gene020525:CDS |
| CCCCAATAACCTCTCCTCAC+TGG | 0.498943 | 4.1:+1573043 | None:intergenic |
| ACGCGAAGAAGAAGAGAAAT+GGG | 0.506516 | 4.1:-1573374 | MS.gene020525:CDS |
| CGGGGATCCACCAAAACCCT+TGG | 0.507607 | 4.1:-1572854 | MS.gene020525:CDS |
| GAAGTAGCTACTGCGATTCG+TGG | 0.513941 | 4.1:-1573097 | MS.gene020525:CDS |
| TCTTCATTCTCTCCCAATCA+AGG | 0.515383 | 4.1:-1573287 | MS.gene020525:CDS |
| GACTGTTTGATGAAAACCTA+CGG | 0.523763 | 4.1:-1572044 | MS.gene020525:CDS |
| GATTCGTGGTGCTATTATCC+TGG | 0.526761 | 4.1:-1573083 | MS.gene020525:CDS |
| TGGGTTCCAGTGACCAAGCT+AGG | 0.527015 | 4.1:-1573355 | MS.gene020525:CDS |
| AGGATCAAAGCCTTAGCAGT+TGG | 0.528734 | 4.1:+1571942 | None:intergenic |
| TGGTTCTGTTACTGTTCGTA+TGG | 0.533362 | 4.1:-1572969 | MS.gene020525:CDS |
| AGAGGTGGTCGTGGTGGACG+TGG | 0.534621 | 4.1:-1573436 | MS.gene020525:CDS |
| GAATCACACTCAGCTTAGCC+AGG | 0.535828 | 4.1:+1573065 | None:intergenic |
| AAACCTTGACGAAATTTCCA+AGG | 0.536877 | 4.1:+1572837 | None:intergenic |
| TTTCATCAAACAGTCAAAAG+TGG | 0.538001 | 4.1:+1572052 | None:intergenic |
| GGTGGTGACAGAGGTGGTCG+TGG | 0.538425 | 4.1:-1573445 | MS.gene020525:CDS |
| TTTGATCCTTGAAGAAGAAA+GGG | 0.538675 | 4.1:-1571928 | MS.gene020525:CDS |
| GGACGTGGTGACAGAGGTCG+TGG | 0.539300 | 4.1:-1573421 | MS.gene020525:CDS |
| CTTCACGAGACGACCTAGCT+TGG | 0.541068 | 4.1:+1573342 | None:intergenic |
| CCAAGAGTATACTGATCTGT+TGG | 0.544918 | 4.1:-1571970 | MS.gene020525:CDS |
| AGACGACCTAGCTTGGTCAC+TGG | 0.551274 | 4.1:+1573349 | None:intergenic |
| GTTCAGAAACAAACCCGGGC+TGG | 0.552874 | 4.1:-1573199 | MS.gene020525:CDS |
| GTTGGCCAAGCCAACTGCTA+AGG | 0.561111 | 4.1:-1571952 | MS.gene020525:CDS |
| GGTTATTGGGGTAACAAGAT+CGG | 0.562624 | 4.1:-1573031 | MS.gene020525:CDS |
| CCTCGTGGGTCCCACTCTCA+AGG | 0.569047 | 4.1:-1573245 | MS.gene020525:CDS |
| AACCTTGACGAAATTTCCAA+GGG | 0.572511 | 4.1:+1572838 | None:intergenic |
| CACAACAAAAGCCTTGAACC+GGG | 0.573291 | 4.1:+1573168 | None:intergenic |
| GGGTCCCACTCTCAAGGATG+AGG | 0.575792 | 4.1:-1573239 | MS.gene020525:CDS |
| ATCACCTCATCCTTGAGAGT+GGG | 0.578711 | 4.1:+1573235 | None:intergenic |
| CATCACCTCATCCTTGAGAG+TGG | 0.579578 | 4.1:+1573234 | None:intergenic |
| TCTAACACCTGAATTCTGGA+AGG | 0.587404 | 4.1:-1572018 | MS.gene020525:CDS |
| CTGAATTCTGGAAGGAGACA+AGG | 0.587850 | 4.1:-1572010 | MS.gene020525:CDS |
| TGTAAGGTTACTGGAAAGTG+TGG | 0.590089 | 4.1:-1572989 | MS.gene020525:CDS |
| AGATCAGTATACTCTTGGAA+TGG | 0.591366 | 4.1:+1571975 | None:intergenic |
| CTAGGTCGTCTCGTGAAGGA+AGG | 0.594091 | 4.1:-1573337 | MS.gene020525:CDS |
| TTCAGGTGTTAGAAAACCGT+AGG | 0.600291 | 4.1:+1572028 | None:intergenic |
| AACCCTTGGAAATTTCGTCA+AGG | 0.601072 | 4.1:-1572840 | MS.gene020525:intron |
| TGCCGGTTCAGAAACAAACC+CGG | 0.601185 | 4.1:-1573204 | MS.gene020525:CDS |
| GGTGGTCGTCGTAGAGCTGG+AGG | 0.613793 | 4.1:-1573400 | MS.gene020525:CDS |
| GGAGGTCGTGGTGGTGACAG+AGG | 0.615640 | 4.1:-1573454 | MS.gene020525:CDS |
| GCCGGTTCAGAAACAAACCC+GGG | 0.617531 | 4.1:-1573203 | MS.gene020525:CDS |
| GGTCGTGGTGGTGACAGAGG+TGG | 0.620463 | 4.1:-1573451 | MS.gene020525:CDS |
| CAAGCTAGGTCGTCTCGTGA+AGG | 0.627163 | 4.1:-1573341 | MS.gene020525:CDS |
| ACCTTACAAGGAACAGTGTG+TGG | 0.631342 | 4.1:+1573004 | None:intergenic |
| CGTATGGTTCCTGCTCCTCG+GGG | 0.632180 | 4.1:-1572953 | MS.gene020525:CDS |
| GGTGACAGAGGTGGTCGTGG+TGG | 0.633373 | 4.1:-1573442 | MS.gene020525:CDS |
| CCTTGAAGAAGAAAGGGCGG+AGG | 0.634716 | 4.1:-1571922 | MS.gene020525:CDS |
| TCAAATCATCGATACCCTCG+TGG | 0.638508 | 4.1:-1573260 | MS.gene020525:CDS |
| ATCAACAACATGGCTGAACG+TGG | 0.644114 | 4.1:-1573508 | None:intergenic |
| GCTGAACGTGGTGGAGATCG+TGG | 0.646255 | 4.1:-1573496 | MS.gene020525:CDS |
| TGAGGTGATGAAGATCATGC+CGG | 0.655740 | 4.1:-1573221 | MS.gene020525:CDS |
| CGTGGTGGACGTGGTGACAG+AGG | 0.656657 | 4.1:-1573427 | MS.gene020525:CDS |
| CTTGAGAGTGGGACCCACGA+GGG | 0.663874 | 4.1:+1573246 | None:intergenic |
| AGTGTGATTCCAGTGAGGAG+AGG | 0.664309 | 4.1:-1573052 | MS.gene020525:CDS |
| AACAACATGGCTGAACGTGG+TGG | 0.670923 | 4.1:-1573505 | None:intergenic |
| GATCCTTGAAGAAGAAAGGG+CGG | 0.672666 | 4.1:-1571925 | MS.gene020525:CDS |
| CCTTGAGAGTGGGACCCACG+AGG | 0.674713 | 4.1:+1573245 | None:intergenic |
| CAAATCATCGATACCCTCGT+GGG | 0.682658 | 4.1:-1573259 | MS.gene020525:CDS |
| GTTGTGGTTGGTGATAACAA+TGG | 0.690378 | 4.1:-1573151 | MS.gene020525:CDS |
| GGTGATAACAATGGTCACGT+TGG | 0.691414 | 4.1:-1573142 | MS.gene020525:CDS |
| CGTGGTGACAGAGGTCGTGG+TGG | 0.723864 | 4.1:-1573418 | MS.gene020525:CDS |
| AGCTGAGTGTGATTCCAGTG+AGG | 0.730503 | 4.1:-1573057 | MS.gene020525:CDS |
| CCAGTGAGGAGAGGTTATTG+GGG | 0.734558 | 4.1:-1573043 | MS.gene020525:CDS |
| GAACGTGGTGGAGATCGTGG+TGG | 0.744959 | 4.1:-1573493 | MS.gene020525:CDS |
| GCAACAATACCAGAACCCCG+AGG | 0.764619 | 4.1:+1572938 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATATTAAAATGAGAAAA+TGG | + | chr4.1:1572979-1572998 | None:intergenic | 15.0% |
| !! | TGTTTATTCAAAATAACAAT+AGG | + | chr4.1:1573027-1573046 | None:intergenic | 15.0% |
| !!! | TAGTTGTTTGAATTTTAATT+TGG | - | chr4.1:1572633-1572652 | MS.gene020525:intron | 15.0% |
| !! | GATAAATCATAAATTAGAGA+AGG | + | chr4.1:1573318-1573337 | None:intergenic | 20.0% |
| !!! | ATGTGAATTGATTTTAAAGA+AGG | - | chr4.1:1573106-1573125 | MS.gene020525:CDS | 20.0% |
| !!! | TGAATTTTTGTGTATTGTTA+TGG | - | chr4.1:1572694-1572713 | MS.gene020525:intron | 20.0% |
| ! | AAAATGCACATACATAAGTT+TGG | + | chr4.1:1573133-1573152 | None:intergenic | 25.0% |
| ! | ACTTTCAGTTGAACATAAAT+TGG | + | chr4.1:1572815-1572834 | None:intergenic | 25.0% |
| ! | GTTAAACTGTACTATTTATC+TGG | - | chr4.1:1572884-1572903 | MS.gene020525:CDS | 25.0% |
| ! | TATGAATCAAAATGCAAGTT+TGG | + | chr4.1:1573065-1573084 | None:intergenic | 25.0% |
| ! | TGTTAGAAGTTTATTGTTGT+TGG | - | chr4.1:1572761-1572780 | MS.gene020525:intron | 25.0% |
| ! | TTCATAACAGACAAATTCTT+AGG | + | chr4.1:1573220-1573239 | None:intergenic | 25.0% |
| !! | TTATGTATGTGCATTTTGTA+TGG | - | chr4.1:1573136-1573155 | MS.gene020525:CDS | 25.0% |
| !!! | CATGGTTTCTTTATTTTAGA+CGG | - | chr4.1:1572730-1572749 | MS.gene020525:intron | 25.0% |
| AATGAAGATAGATCTGTTCA+AGG | + | chr4.1:1572117-1572136 | None:intergenic | 30.0% | |
| TATGGCAATACTATGATACA+TGG | - | chr4.1:1572712-1572731 | MS.gene020525:intron | 30.0% | |
| TTGATTCATATTATCCCTGT+TGG | - | chr4.1:1573075-1573094 | MS.gene020525:CDS | 30.0% | |
| TTTCATCAAACAGTCAAAAG+TGG | + | chr4.1:1573367-1573386 | None:intergenic | 30.0% | |
| TTTGATCCTTGAAGAAGAAA+GGG | - | chr4.1:1573488-1573507 | MS.gene020525:CDS | 30.0% | |
| ! | TTAGTTGGCAACATTTTACT+GGG | - | chr4.1:1573252-1573271 | MS.gene020525:CDS | 30.0% |
| ! | TTGTTTGCTAAATTGACAGA+AGG | - | chr4.1:1572669-1572688 | MS.gene020525:intron | 30.0% |
| ! | TTTAGTTGGCAACATTTTAC+TGG | - | chr4.1:1573251-1573270 | MS.gene020525:CDS | 30.0% |
| !!! | GAATTGCAGCTTTTTTTAGT+TGG | - | chr4.1:1573237-1573256 | MS.gene020525:CDS | 30.0% |
| AAACCTTGACGAAATTTCCA+AGG | + | chr4.1:1572582-1572601 | None:intergenic | 35.0% | |
| AACCTTGACGAAATTTCCAA+GGG | + | chr4.1:1572581-1572600 | None:intergenic | 35.0% | |
| AGATCAGTATACTCTTGGAA+TGG | + | chr4.1:1573444-1573463 | None:intergenic | 35.0% | |
| ATACTCTTGGAATGGAGATT+TGG | + | chr4.1:1573436-1573455 | None:intergenic | 35.0% | |
| ATGATTTGATGCTCCTTGAT+TGG | + | chr4.1:1572145-1572164 | None:intergenic | 35.0% | |
| CAAAGAATATGTCCATTGCA+TGG | + | chr4.1:1573194-1573213 | None:intergenic | 35.0% | |
| CTTTGATCCTTGAAGAAGAA+AGG | - | chr4.1:1573487-1573506 | MS.gene020525:CDS | 35.0% | |
| GACTGTTTGATGAAAACCTA+CGG | - | chr4.1:1573372-1573391 | MS.gene020525:CDS | 35.0% | |
| TCACATTCACAATACCAACA+GGG | + | chr4.1:1573092-1573111 | None:intergenic | 35.0% | |
| TGATTTGATGCTCCTTGATT+GGG | + | chr4.1:1572144-1572163 | None:intergenic | 35.0% | |
| TTCACATTCACAATACCAAC+AGG | + | chr4.1:1573093-1573112 | None:intergenic | 35.0% | |
| ! | GCTGTGACATTTCATTTTAC+AGG | - | chr4.1:1573341-1573360 | MS.gene020525:CDS | 35.0% |
| ! | GTTTTCTAACACCTGAATTC+TGG | - | chr4.1:1573394-1573413 | MS.gene020525:CDS | 35.0% |
| ! | TTTTGTGTAGAACCATGCAA+TGG | - | chr4.1:1573179-1573198 | MS.gene020525:CDS | 35.0% |
| !! | TGTCTTGTTGTTTCATAGTG+CGG | - | chr4.1:1572998-1573017 | MS.gene020525:CDS | 35.0% |
| AACCCTTGGAAATTTCGTCA+AGG | - | chr4.1:1572576-1572595 | MS.gene020525:intron | 40.0% | |
| ACGCGAAGAAGAAGAGAAAT+GGG | - | chr4.1:1572042-1572061 | MS.gene020525:CDS | 40.0% | |
| ACTGTTCCTTGTAAGGTTAC+TGG | - | chr4.1:1572418-1572437 | MS.gene020525:intron | 40.0% | |
| CACTTTCCAGTAACCTTACA+AGG | + | chr4.1:1572427-1572446 | None:intergenic | 40.0% | |
| CCAACAGATCAGTATACTCT+TGG | + | chr4.1:1573449-1573468 | None:intergenic | 40.0% | |
| CTGGTTGAACAATAATTCCG+TGG | - | chr4.1:1572903-1572922 | MS.gene020525:CDS | 40.0% | |
| GATAGATCTGTTCAAGGCTT+CGG | + | chr4.1:1572111-1572130 | None:intergenic | 40.0% | |
| GCAAACTGCAAAACCTTCTT+AGG | + | chr4.1:1572514-1572533 | None:intergenic | 40.0% | |
| GGTTATTGGGGTAACAAGAT+CGG | - | chr4.1:1572385-1572404 | MS.gene020525:intron | 40.0% | |
| TCTAACACCTGAATTCTGGA+AGG | - | chr4.1:1573398-1573417 | MS.gene020525:CDS | 40.0% | |
| TCTTCATTCTCTCCCAATCA+AGG | - | chr4.1:1572129-1572148 | MS.gene020525:intron | 40.0% | |
| TGTAAGGTTACTGGAAAGTG+TGG | - | chr4.1:1572427-1572446 | MS.gene020525:intron | 40.0% | |
| TGTCGATGATTCATAGACCA+CGG | + | chr4.1:1572923-1572942 | None:intergenic | 40.0% | |
| TTCAGGTGTTAGAAAACCGT+AGG | + | chr4.1:1573391-1573410 | None:intergenic | 40.0% | |
| TTCTGGTATTGTTGCTGCTA+GGG | - | chr4.1:1572486-1572505 | MS.gene020525:intron | 40.0% | |
| ! | AAGAAGGTTTTGCAGTTTGC+TGG | - | chr4.1:1572514-1572533 | MS.gene020525:intron | 40.0% |
| ! | ATGATGTTTTCACTTCCTCC+CGG | - | chr4.1:1572542-1572561 | MS.gene020525:intron | 40.0% |
| ! | CCAAGAGTATACTGATCTGT+TGG | - | chr4.1:1573446-1573465 | MS.gene020525:CDS | 40.0% |
| ! | GACGAAATTTCCAAGGGTTT+TGG | + | chr4.1:1572575-1572594 | None:intergenic | 40.0% |
| ! | TGGTTCTGTTACTGTTCGTA+TGG | - | chr4.1:1572447-1572466 | MS.gene020525:intron | 40.0% |
| !! | GAAATTTCCAAGGGTTTTGG+TGG | + | chr4.1:1572572-1572591 | None:intergenic | 40.0% |
| !! | GTTGTGGTTGGTGATAACAA+TGG | - | chr4.1:1572265-1572284 | MS.gene020525:intron | 40.0% |
| !! | TTCAAGGCTTTTGTTGTGGT+TGG | - | chr4.1:1572253-1572272 | MS.gene020525:intron | 40.0% |
| ACCTTACAAGGAACAGTGTG+TGG | + | chr4.1:1572415-1572434 | None:intergenic | 45.0% | |
| AGGATCAAAGCCTTAGCAGT+TGG | + | chr4.1:1573477-1573496 | None:intergenic | 45.0% | |
| ATCACCTCATCCTTGAGAGT+GGG | + | chr4.1:1572184-1572203 | None:intergenic | 45.0% | |
| CAAATCATCGATACCCTCGT+GGG | - | chr4.1:1572157-1572176 | MS.gene020525:intron | 45.0% | |
| CACAACAAAAGCCTTGAACC+GGG | + | chr4.1:1572251-1572270 | None:intergenic | 45.0% | |
| CCACAACAAAAGCCTTGAAC+CGG | + | chr4.1:1572252-1572271 | None:intergenic | 45.0% | |
| CTTGTCTCCTTCCAGAATTC+AGG | + | chr4.1:1573408-1573427 | None:intergenic | 45.0% | |
| GACGCGAAGAAGAAGAGAAA+TGG | - | chr4.1:1572041-1572060 | MS.gene020525:CDS | 45.0% | |
| GATCCTTGAAGAAGAAAGGG+CGG | - | chr4.1:1573491-1573510 | MS.gene020525:CDS | 45.0% | |
| GGTGATAACAATGGTCACGT+TGG | - | chr4.1:1572274-1572293 | MS.gene020525:intron | 45.0% | |
| GTTCTGGTATTGTTGCTGCT+AGG | - | chr4.1:1572485-1572504 | MS.gene020525:intron | 45.0% | |
| TCAAATCATCGATACCCTCG+TGG | - | chr4.1:1572156-1572175 | MS.gene020525:intron | 45.0% | |
| TCCAGTGAGGAGAGGTTATT+GGG | - | chr4.1:1572372-1572391 | MS.gene020525:intron | 45.0% | |
| TGAGGTGATGAAGATCATGC+CGG | - | chr4.1:1572195-1572214 | MS.gene020525:intron | 45.0% | |
| TTCCAGTGAGGAGAGGTTAT+TGG | - | chr4.1:1572371-1572390 | MS.gene020525:intron | 45.0% | |
| ! | AACAATGGTCACGTTGGTCT+TGG | - | chr4.1:1572280-1572299 | MS.gene020525:intron | 45.0% |
| ! | CTGAATTCTGGAAGGAGACA+AGG | - | chr4.1:1573406-1573425 | MS.gene020525:CDS | 45.0% |
| ! | TGATGTTTTCACTTCCTCCC+GGG | - | chr4.1:1572543-1572562 | MS.gene020525:intron | 45.0% |
| !! | CTTGTTGTTTCATAGTGCGG+TGG | - | chr4.1:1573001-1573020 | MS.gene020525:CDS | 45.0% |
| !! | GATTCGTGGTGCTATTATCC+TGG | - | chr4.1:1572333-1572352 | MS.gene020525:intron | 45.0% |
| AGCTGAGTGTGATTCCAGTG+AGG | - | chr4.1:1572359-1572378 | MS.gene020525:intron | 50.0% | |
| AGTGTGATTCCAGTGAGGAG+AGG | - | chr4.1:1572364-1572383 | MS.gene020525:intron | 50.0% | |
| CAAAGCCTTAGCAGTTGGCT+TGG | + | chr4.1:1573472-1573491 | None:intergenic | 50.0% | |
| CATCACCTCATCCTTGAGAG+TGG | + | chr4.1:1572185-1572204 | None:intergenic | 50.0% | |
| CCAGTGAGGAGAGGTTATTG+GGG | - | chr4.1:1572373-1572392 | MS.gene020525:intron | 50.0% | |
| GAAGTAGCTACTGCGATTCG+TGG | - | chr4.1:1572319-1572338 | MS.gene020525:intron | 50.0% | |
| GAATCACACTCAGCTTAGCC+AGG | + | chr4.1:1572354-1572373 | None:intergenic | 50.0% | |
| GCCACACACTGTTCCTTGTA+AGG | - | chr4.1:1572411-1572430 | MS.gene020525:intron | 50.0% | |
| TGCTGCTAGGGTTCCTAAGA+AGG | - | chr4.1:1572498-1572517 | MS.gene020525:intron | 50.0% | |
| TTCGTATGGTTCCTGCTCCT+CGG | - | chr4.1:1572461-1572480 | MS.gene020525:intron | 50.0% | |
| ! | CCGGTTCAAGGCTTTTGTTG+TGG | - | chr4.1:1572249-1572268 | MS.gene020525:intron | 50.0% |
| ! | GATGTTTTCACTTCCTCCCG+GGG | - | chr4.1:1572544-1572563 | MS.gene020525:intron | 50.0% |
| !! | TGCCGGTTCAGAAACAAACC+CGG | - | chr4.1:1572212-1572231 | MS.gene020525:intron | 50.0% |
| !!! | GGTGGTTTTGGCAGTGGTTT+TGG | - | chr4.1:1571941-1571960 | MS.gene020525:CDS | 50.0% |
| !!! | GGTTTTGGCAGTGGTTTTGG+AGG | - | chr4.1:1571944-1571963 | MS.gene020525:CDS | 50.0% |
| AGACGACCTAGCTTGGTCAC+TGG | + | chr4.1:1572070-1572089 | None:intergenic | 55.0% | |
| CAAGCTAGGTCGTCTCGTGA+AGG | - | chr4.1:1572075-1572094 | MS.gene020525:intron | 55.0% | |
| CCCCAATAACCTCTCCTCAC+TGG | + | chr4.1:1572376-1572395 | None:intergenic | 55.0% | |
| CCTCCGCCCTTTCTTCTTCA+AGG | + | chr4.1:1573497-1573516 | None:intergenic | 55.0% | |
| CCTTGAAGAAGAAAGGGCGG+AGG | - | chr4.1:1573494-1573513 | MS.gene020525:CDS | 55.0% | |
| CTAGGTCGTCTCGTGAAGGA+AGG | - | chr4.1:1572079-1572098 | MS.gene020525:intron | 55.0% | |
| CTTCACGAGACGACCTAGCT+TGG | + | chr4.1:1572077-1572096 | None:intergenic | 55.0% | |
| GCAACAATACCAGAACCCCG+AGG | + | chr4.1:1572481-1572500 | None:intergenic | 55.0% | |
| GTTCAGAAACAAACCCGGGC+TGG | - | chr4.1:1572217-1572236 | MS.gene020525:intron | 55.0% | |
| GTTGGCCAAGCCAACTGCTA+AGG | - | chr4.1:1573464-1573483 | MS.gene020525:CDS | 55.0% | |
| TCGTATGGTTCCTGCTCCTC+GGG | - | chr4.1:1572462-1572481 | MS.gene020525:intron | 55.0% | |
| TGGGTTCCAGTGACCAAGCT+AGG | - | chr4.1:1572061-1572080 | MS.gene020525:intron | 55.0% | |
| TGGTCAGAGAACCCGGTTCA+AGG | - | chr4.1:1572237-1572256 | MS.gene020525:intron | 55.0% | |
| ! | GCCGGTTCAGAAACAAACCC+GGG | - | chr4.1:1572213-1572232 | MS.gene020525:intron | 55.0% |
| ! | GGTGGAGATCGTGGTGGTTT+TGG | - | chr4.1:1571929-1571948 | MS.gene020525:CDS | 55.0% |
| !! | AAGGGTTTTGGTGGATCCCC+GGG | + | chr4.1:1572563-1572582 | None:intergenic | 55.0% |
| !! | CAAGGGTTTTGGTGGATCCC+CGG | + | chr4.1:1572564-1572583 | None:intergenic | 55.0% |
| !! | GCCCGGGTTTGTTTCTGAAC+CGG | + | chr4.1:1572217-1572236 | None:intergenic | 55.0% |
| !!! | AGTGGTTTTGGAGGTCGTGG+TGG | - | chr4.1:1571953-1571972 | MS.gene020525:CDS | 55.0% |
| !!! | GATCGTGGTGGTTTTGGCAG+TGG | - | chr4.1:1571935-1571954 | MS.gene020525:CDS | 55.0% |
| ATACCAGAACCCCGAGGAGC+AGG | + | chr4.1:1572475-1572494 | None:intergenic | 60.0% | |
| CGGGGATCCACCAAAACCCT+TGG | - | chr4.1:1572562-1572581 | MS.gene020525:intron | 60.0% | |
| CGTATGGTTCCTGCTCCTCG+GGG | - | chr4.1:1572463-1572482 | MS.gene020525:intron | 60.0% | |
| CTTGAGAGTGGGACCCACGA+GGG | + | chr4.1:1572173-1572192 | None:intergenic | 60.0% | |
| GGGTCCCACTCTCAAGGATG+AGG | - | chr4.1:1572177-1572196 | MS.gene020525:intron | 60.0% | |
| ! | GAACGTGGTGGAGATCGTGG+TGG | - | chr4.1:1571923-1571942 | MS.gene020525:CDS | 60.0% |
| ! | GCTGAACGTGGTGGAGATCG+TGG | - | chr4.1:1571920-1571939 | MS.gene020525:CDS | 60.0% |
| !!! | GGCAGTGGTTTTGGAGGTCG+TGG | - | chr4.1:1571950-1571969 | MS.gene020525:CDS | 60.0% |
| ACCGGGTTCTCTGACCAGCC+CGG | + | chr4.1:1572234-1572253 | None:intergenic | 65.0% | |
| CCTCGTGGGTCCCACTCTCA+AGG | - | chr4.1:1572171-1572190 | MS.gene020525:intron | 65.0% | |
| CCTTGAGAGTGGGACCCACG+AGG | + | chr4.1:1572174-1572193 | None:intergenic | 65.0% | |
| CGTGGTGACAGAGGTCGTGG+TGG | - | chr4.1:1571998-1572017 | MS.gene020525:CDS | 65.0% | |
| CGTGGTGGTCGTCGTAGAGC+TGG | - | chr4.1:1572013-1572032 | MS.gene020525:CDS | 65.0% | |
| GGACGTGGTGACAGAGGTCG+TGG | - | chr4.1:1571995-1572014 | MS.gene020525:CDS | 65.0% | |
| GGTGACAGAGGTGGTCGTGG+TGG | - | chr4.1:1571974-1571993 | MS.gene020525:CDS | 65.0% | |
| GGTGGTCGTCGTAGAGCTGG+AGG | - | chr4.1:1572016-1572035 | MS.gene020525:CDS | 65.0% | |
| GGTGGTGACAGAGGTGGTCG+TGG | - | chr4.1:1571971-1571990 | MS.gene020525:CDS | 65.0% | |
| GTTCCTGCTCCTCGGGGTTC+TGG | - | chr4.1:1572469-1572488 | MS.gene020525:intron | 65.0% | |
| ! | GGAGGTCGTGGTGGTGACAG+AGG | - | chr4.1:1571962-1571981 | MS.gene020525:CDS | 65.0% |
| ! | GGTCGTGGTGGTGACAGAGG+TGG | - | chr4.1:1571965-1571984 | MS.gene020525:CDS | 65.0% |
| !! | AGAGGTGGTCGTGGTGGACG+TGG | - | chr4.1:1571980-1571999 | MS.gene020525:CDS | 65.0% |
| !! | CGTGGTGGACGTGGTGACAG+AGG | - | chr4.1:1571989-1572008 | MS.gene020525:CDS | 65.0% |
| !! | GGTTTTGGTGGATCCCCGGG+AGG | + | chr4.1:1572560-1572579 | None:intergenic | 65.0% |
| CCGGGTTCTCTGACCAGCCC+GGG | + | chr4.1:1572233-1572252 | None:intergenic | 70.0% | |
| !! | CCCGGGCTGGTCAGAGAACC+CGG | - | chr4.1:1572230-1572249 | MS.gene020525:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1571917 | 1573521 | 1571917 | ID=MS.gene020525 |
| chr4.1 | mRNA | 1571917 | 1573521 | 1571917 | ID=MS.gene020525.t1;Parent=MS.gene020525 |
| chr4.1 | exon | 1572841 | 1573521 | 1572841 | ID=MS.gene020525.t1.exon1;Parent=MS.gene020525.t1 |
| chr4.1 | CDS | 1572841 | 1573521 | 1572841 | ID=cds.MS.gene020525.t1;Parent=MS.gene020525.t1 |
| chr4.1 | exon | 1571917 | 1572075 | 1571917 | ID=MS.gene020525.t1.exon2;Parent=MS.gene020525.t1 |
| chr4.1 | CDS | 1571917 | 1572075 | 1571917 | ID=cds.MS.gene020525.t1;Parent=MS.gene020525.t1 |
| Gene Sequence |
| Protein sequence |
