AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009198

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009198.t1 MTR_8g062780 96.212 264 10 0 1 264 66 329 0.0 527
MS.gene009198.t1 MTR_1g090760 58.238 261 108 1 4 263 74 334 2.43e-115 334
MS.gene009198.t1 MTR_0286s0010 54.297 256 115 1 4 259 81 334 1.92e-104 306
MS.gene009198.t1 MTR_6g008075 54.297 256 115 1 4 259 81 334 1.92e-104 306
MS.gene009198.t1 MTR_7g029030 46.899 258 131 3 2 259 69 320 2.20e-79 242
MS.gene009198.t1 MTR_5g016010 45.914 257 136 2 1 255 70 325 1.07e-76 236
MS.gene009198.t1 MTR_4g095450 44.788 259 135 3 2 258 71 323 2.02e-73 227
MS.gene009198.t1 MTR_1g009750 42.692 260 145 3 2 259 71 328 1.25e-71 223
MS.gene009198.t1 MTR_4g087965 44.358 257 140 2 2 255 86 342 8.71e-71 221
MS.gene009198.t1 MTR_4g127670 43.580 257 139 3 1 255 67 319 3.65e-70 219
MS.gene009198.t1 MTR_1g101830 42.857 259 142 4 1 259 70 322 1.94e-65 207
MS.gene009198.t1 MTR_7g107520 41.860 258 144 4 2 259 69 320 9.03e-63 200
MS.gene009198.t1 MTR_4g122640 42.085 259 145 4 2 259 82 336 2.94e-62 199
MS.gene009198.t1 MTR_1g077000 42.636 258 135 5 2 259 83 327 2.05e-61 196
MS.gene009198.t1 MTR_1g009750 39.535 258 139 4 2 259 71 311 5.04e-61 195
MS.gene009198.t1 MTR_5g022870 41.603 262 137 7 2 259 67 316 2.14e-60 194
MS.gene009198.t1 MTR_1g025980 41.176 255 143 5 2 256 68 315 7.91e-60 192
MS.gene009198.t1 MTR_2g008710 41.825 263 142 5 1 259 70 325 1.72e-59 191
MS.gene009198.t1 MTR_0155s0040 41.379 261 134 5 2 259 71 315 4.86e-59 190
MS.gene009198.t1 MTR_5g021060 40.769 260 151 3 2 260 74 331 8.03e-59 190
MS.gene009198.t1 MTR_8g075100 39.768 259 148 5 1 259 69 319 1.31e-58 189
MS.gene009198.t1 MTR_4g046713 37.838 259 157 3 2 259 71 326 2.20e-58 189
MS.gene009198.t1 MTR_2g029830 40.769 260 146 4 4 259 6 261 2.40e-58 187
MS.gene009198.t1 MTR_3g092990 40.856 257 151 1 4 260 61 316 1.08e-57 187
MS.gene009198.t1 MTR_2g029830 40.684 263 148 4 2 260 72 330 1.47e-57 187
MS.gene009198.t1 MTR_3g092990 40.541 259 153 1 2 260 70 327 2.33e-57 186
MS.gene009198.t1 MTR_8g076820 40.000 260 153 3 1 259 73 330 8.90e-57 185
MS.gene009198.t1 MTR_7g072510 41.085 258 143 3 2 259 64 312 8.98e-57 184
MS.gene009198.t1 MTR_2g029560 37.931 261 158 3 1 259 67 325 1.96e-56 184
MS.gene009198.t1 MTR_4g125940 41.221 262 146 4 2 259 17 274 5.20e-56 181
MS.gene009198.t1 MTR_2g040000 41.132 265 147 4 1 260 72 332 6.44e-56 182
MS.gene009198.t1 MTR_2g029815 39.924 263 150 4 2 260 73 331 9.33e-56 182
MS.gene009198.t1 MTR_4g114210 42.045 264 141 5 1 259 64 320 2.58e-55 181
MS.gene009198.t1 MTR_4g132490 37.452 259 157 3 2 259 73 327 3.11e-55 181
MS.gene009198.t1 MTR_2g088770 36.641 262 160 5 1 260 69 326 4.19e-55 180
MS.gene009198.t1 MTR_4g125940 41.065 263 147 4 2 260 72 330 4.91e-55 180
MS.gene009198.t1 MTR_2g008730 41.393 244 135 4 20 259 62 301 7.12e-55 179
MS.gene009198.t1 MTR_1g038680 39.464 261 154 3 2 259 73 332 1.30e-54 179
MS.gene009198.t1 MTR_2g029820 39.544 263 151 4 2 260 73 331 1.90e-54 179
MS.gene009198.t1 MTR_3g072190 38.224 259 151 3 1 259 2 251 2.09e-54 176
MS.gene009198.t1 MTR_7g093370 41.288 264 146 5 1 259 112 371 2.25e-54 180
MS.gene009198.t1 MTR_7g072480 40.154 259 146 3 1 259 67 316 3.10e-54 178
MS.gene009198.t1 MTR_2g029850 38.314 261 157 3 1 259 72 330 4.20e-54 178
MS.gene009198.t1 MTR_6g043460 37.209 258 151 4 4 260 82 329 1.74e-53 177
MS.gene009198.t1 MTR_3g072190 38.610 259 150 3 1 259 69 318 2.60e-53 176
MS.gene009198.t1 MTR_1g054205 39.695 262 153 4 1 259 67 326 3.42e-53 175
MS.gene009198.t1 MTR_2g029730 38.077 260 157 3 2 259 69 326 4.41e-53 176
MS.gene009198.t1 MTR_1g086320 40.684 263 148 4 2 259 74 333 7.73e-53 174
MS.gene009198.t1 MTR_4g029190 41.860 258 143 4 2 259 90 340 9.80e-53 174
MS.gene009198.t1 MTR_2g029860 37.786 262 155 4 2 259 73 330 1.62e-52 174
MS.gene009198.t1 MTR_2g028980 39.080 261 153 4 2 259 73 330 2.64e-52 174
MS.gene009198.t1 MTR_4g083710 40.613 261 145 5 2 259 71 324 2.87e-52 173
MS.gene009198.t1 MTR_7g086820 37.931 261 153 4 2 262 64 315 2.87e-52 172
MS.gene009198.t1 MTR_7g086870 38.610 259 147 4 2 260 66 312 4.85e-52 172
MS.gene009198.t1 MTR_2g029800 37.643 263 156 4 2 260 73 331 5.21e-52 173
MS.gene009198.t1 MTR_4g029170 38.462 260 149 5 2 259 71 321 7.13e-52 172
MS.gene009198.t1 MTR_4g133800 39.464 261 147 6 2 261 85 335 8.60e-52 172
MS.gene009198.t1 MTR_6g027440 38.610 259 151 4 1 259 64 314 1.23e-51 171
MS.gene009198.t1 MTR_2g029750 39.163 263 150 5 2 259 73 330 1.37e-51 172
MS.gene009198.t1 MTR_4g030890 39.382 259 152 4 2 260 144 397 1.84e-51 173
MS.gene009198.t1 MTR_4g132110 37.692 260 153 3 2 259 76 328 2.68e-51 171
MS.gene009198.t1 MTR_3g094650 38.189 254 150 4 2 255 72 318 3.28e-51 170
MS.gene009198.t1 MTR_1g086490 40.149 269 148 4 2 259 74 340 3.37e-51 171
MS.gene009198.t1 MTR_5g014100 37.407 270 149 5 2 259 70 331 3.69e-51 170
MS.gene009198.t1 MTR_5g017850 37.838 259 159 2 1 259 70 326 1.83e-50 168
MS.gene009198.t1 MTR_4g031140 37.931 261 151 4 2 259 72 324 4.17e-50 168
MS.gene009198.t1 MTR_2g084090 37.066 259 155 3 1 259 68 318 1.32e-49 166
MS.gene009198.t1 MTR_5g083860 36.680 259 157 4 1 259 74 325 4.30e-49 165
MS.gene009198.t1 MTR_4g029180 37.165 261 153 5 1 259 70 321 5.90e-49 164
MS.gene009198.t1 MTR_4g029200 39.768 259 147 3 1 259 89 338 6.54e-49 164
MS.gene009198.t1 MTR_4g132110 36.981 265 153 4 2 259 76 333 7.72e-49 164
MS.gene009198.t1 MTR_2g029910 36.742 264 160 3 2 261 74 334 1.02e-48 164
MS.gene009198.t1 MTR_5g074970 38.996 259 145 5 1 255 73 322 1.18e-48 164
MS.gene009198.t1 MTR_7g026990 38.224 259 148 5 2 259 75 322 1.66e-48 163
MS.gene009198.t1 MTR_3g466180 41.473 258 142 3 2 259 75 323 1.83e-48 163
MS.gene009198.t1 MTR_3g466200 38.168 262 150 5 1 259 68 320 1.95e-48 163
MS.gene009198.t1 MTR_5g017860 35.135 259 166 2 1 259 70 326 2.01e-48 163
MS.gene009198.t1 MTR_2g084110 37.308 260 152 5 1 259 68 317 2.31e-48 162
MS.gene009198.t1 MTR_5g074860 37.692 260 147 7 1 255 72 321 3.01e-48 162
MS.gene009198.t1 MTR_4g074995 38.996 259 139 4 2 259 68 308 3.24e-48 162
MS.gene009198.t1 MTR_2g029740 36.641 262 158 4 2 259 73 330 8.13e-48 162
MS.gene009198.t1 MTR_2g084080 36.680 259 155 4 1 259 68 317 8.53e-48 161
MS.gene009198.t1 MTR_6g043280 36.680 259 154 4 1 259 84 332 1.38e-47 161
MS.gene009198.t1 MTR_5g033470 35.714 266 158 6 2 259 117 377 2.49e-47 161
MS.gene009198.t1 MTR_6g043240 36.293 259 153 4 1 259 85 331 4.39e-47 160
MS.gene009198.t1 MTR_2g437770 36.154 260 152 7 2 259 94 341 4.54e-47 160
MS.gene009198.t1 MTR_1g115900 38.697 261 147 6 2 259 71 321 5.09e-47 159
MS.gene009198.t1 MTR_5g049280 33.712 264 168 5 1 259 76 337 7.48e-47 159
MS.gene009198.t1 MTR_1g066380 36.965 257 153 3 5 259 6 255 7.75e-47 157
MS.gene009198.t1 MTR_1g066380 36.782 261 156 3 1 259 70 323 8.82e-47 159
MS.gene009198.t1 MTR_3g467600 37.500 264 151 6 1 259 70 324 2.97e-46 157
MS.gene009198.t1 MTR_1g066710 37.165 261 155 3 1 259 70 323 4.97e-46 157
MS.gene009198.t1 MTR_3g094670 37.891 256 148 5 2 255 72 318 2.41e-45 155
MS.gene009198.t1 MTR_2g084000 34.749 259 159 4 2 259 70 319 3.87e-45 154
MS.gene009198.t1 MTR_1g022970 38.550 262 155 5 1 259 89 347 6.32e-45 154
MS.gene009198.t1 MTR_5g074760 38.258 264 148 6 1 259 68 321 7.58e-45 154
MS.gene009198.t1 MTR_1g066640 36.154 260 157 3 2 259 71 323 1.05e-44 153
MS.gene009198.t1 MTR_4g074990 37.209 258 142 4 2 259 68 305 1.09e-44 153
MS.gene009198.t1 MTR_5g074740 37.970 266 150 6 1 261 68 323 1.42e-44 153
MS.gene009198.t1 MTR_0147s0010 38.843 242 128 3 33 255 138 378 2.35e-44 154
MS.gene009198.t1 MTR_2g084020 35.521 259 157 5 2 259 69 318 4.07e-44 152
MS.gene009198.t1 MTR_2g084010 35.769 260 157 5 1 259 68 318 1.21e-43 150
MS.gene009198.t1 MTR_5g074710 36.090 266 155 6 1 261 68 323 3.98e-43 149
MS.gene009198.t1 MTR_3g094630 37.692 260 151 5 2 259 72 322 6.76e-43 149
MS.gene009198.t1 MTR_2g077990 34.266 286 155 6 1 255 119 402 2.28e-42 149
MS.gene009198.t1 MTR_3g105790 36.015 261 157 5 2 259 69 322 4.27e-42 146
MS.gene009198.t1 MTR_2g099175 34.470 264 159 6 2 259 80 335 6.80e-42 146
MS.gene009198.t1 MTR_2g067440 33.451 284 157 5 1 255 103 383 1.03e-41 147
MS.gene009198.t1 MTR_2g008160 36.742 264 155 7 1 259 67 323 1.14e-41 145
MS.gene009198.t1 MTR_1g066680 35.361 263 157 4 1 259 69 322 1.99e-41 145
MS.gene009198.t1 MTR_2g078610 33.916 286 156 6 1 255 119 402 4.00e-41 146
MS.gene009198.t1 MTR_3g105790 36.522 230 141 3 33 259 19 246 2.11e-40 140
MS.gene009198.t1 MTR_4g074980 35.271 258 135 5 2 259 69 294 2.03e-38 136
MS.gene009198.t1 MTR_2g067450 35.135 259 159 5 1 255 53 306 3.96e-38 136
MS.gene009198.t1 MTR_2g078280 33.942 274 148 6 1 243 119 390 4.17e-38 137
MS.gene009198.t1 MTR_4g074980 40.526 190 108 4 2 191 69 253 6.14e-38 134
MS.gene009198.t1 MTR_5g074700 36.364 231 123 5 34 261 7 216 2.69e-37 131
MS.gene009198.t1 MTR_3g072210 36.269 193 113 4 69 259 54 238 1.13e-32 120
MS.gene009198.t1 MTR_2g029880 34.359 195 111 5 71 261 9 190 2.68e-30 113
MS.gene009198.t1 MTR_2g008160 32.319 263 131 7 2 259 68 288 7.47e-29 111
MS.gene009198.t1 MTR_7g072490 32.766 235 95 5 4 238 2 173 9.35e-27 103
MS.gene009198.t1 MTR_5g074860 30.000 260 128 6 1 255 72 282 8.46e-26 103
MS.gene009198.t1 MTR_2g078560 28.767 219 126 3 67 255 98 316 2.35e-24 99.8
MS.gene009198.t1 MTR_5g058120 33.529 170 99 3 96 264 8 164 5.76e-24 97.4
MS.gene009198.t1 MTR_7g086790 35.583 163 84 3 5 167 17 158 4.94e-23 93.6
MS.gene009198.t1 MTR_2g008160 41.353 133 73 3 2 134 68 195 6.27e-23 93.6
MS.gene009198.t1 MTR_3g107060 29.675 246 102 8 3 238 126 310 5.07e-19 85.1
MS.gene009198.t1 MTR_4g031040 32.593 135 63 3 69 198 25 136 3.30e-14 68.2
MS.gene009198.t1 MTR_1g098320 43.590 78 44 0 182 259 47 124 3.80e-13 65.5
MS.gene009198.t1 MTR_6g048160 52.941 68 27 2 2 69 27 89 7.41e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009198.t1 AT5G47000 60.232 259 99 1 4 262 79 333 9.86e-115 333
MS.gene009198.t1 AT5G40150 60.547 256 96 2 4 259 78 328 5.64e-113 328
MS.gene009198.t1 AT4G17690 58.462 260 103 1 4 263 72 326 2.14e-111 324
MS.gene009198.t1 AT3G28200 58.594 256 100 1 4 259 67 316 9.20e-110 320
MS.gene009198.t1 AT1G24110 56.705 261 110 2 1 260 65 323 2.91e-104 306
MS.gene009198.t1 AT4G37530 45.594 261 137 3 2 259 71 329 4.52e-78 239
MS.gene009198.t1 AT4G37520 44.615 260 141 2 2 259 71 329 6.90e-78 239
MS.gene009198.t1 AT5G14130 46.538 260 132 3 2 259 76 330 1.14e-75 233
MS.gene009198.t1 AT4G37520 44.231 260 139 3 2 259 71 326 1.60e-75 233
MS.gene009198.t1 AT5G14130 46.538 260 132 3 2 259 117 371 3.47e-75 233
MS.gene009198.t1 AT5G67400 43.462 260 144 2 2 259 71 329 9.69e-71 221
MS.gene009198.t1 AT3G49960 43.678 261 144 2 1 259 70 329 3.67e-70 219
MS.gene009198.t1 AT2G18980 41.762 261 145 3 1 259 68 323 5.16e-68 213
MS.gene009198.t1 AT4G30170 41.154 260 146 3 2 259 71 325 1.39e-66 210
MS.gene009198.t1 AT4G37530 46.729 214 109 3 2 212 71 282 7.97e-64 201
MS.gene009198.t1 AT3G50990 41.379 261 148 4 2 260 85 342 6.18e-61 196
MS.gene009198.t1 AT2G34060 40.230 261 153 2 1 258 85 345 8.53e-61 196
MS.gene009198.t1 AT4G36430 40.000 260 153 3 2 260 74 331 2.18e-60 194
MS.gene009198.t1 AT4G33420 43.023 258 134 5 2 259 81 325 4.73e-60 193
MS.gene009198.t1 AT2G18150 40.385 260 152 3 2 260 80 337 5.26e-60 193
MS.gene009198.t1 AT5G66390 40.996 261 151 3 1 260 76 334 7.04e-60 193
MS.gene009198.t1 AT5G51890 40.873 252 144 3 1 252 69 315 1.32e-59 192
MS.gene009198.t1 AT4G33420 43.023 258 134 5 2 259 128 372 2.26e-59 192
MS.gene009198.t1 AT5G42180 40.157 254 145 4 2 255 67 313 9.66e-58 187
MS.gene009198.t1 AT2G18140 39.464 261 155 3 1 260 78 336 9.89e-58 187
MS.gene009198.t1 AT4G31760 41.538 260 144 4 2 259 73 326 1.30e-57 187
MS.gene009198.t1 AT3G21770 41.016 256 145 5 2 255 73 324 3.84e-57 186
MS.gene009198.t1 AT4G16270 40.927 259 148 4 2 259 94 348 5.29e-57 186
MS.gene009198.t1 AT5G06720 39.231 260 154 3 2 259 76 333 1.12e-56 184
MS.gene009198.t1 AT5G17820 38.760 258 146 4 2 259 68 313 1.17e-56 184
MS.gene009198.t1 AT5G06730 38.846 260 155 3 2 259 77 334 2.21e-56 184
MS.gene009198.t1 AT5G17820 38.760 258 146 4 2 259 121 366 1.14e-55 183
MS.gene009198.t1 AT2G24800 40.299 268 137 6 2 259 75 329 1.44e-55 182
MS.gene009198.t1 AT1G05260 38.113 265 150 6 2 260 70 326 3.50e-55 181
MS.gene009198.t1 AT2G38380 38.636 264 153 5 1 259 74 333 4.93e-55 181
MS.gene009198.t1 AT1G14550 40.385 260 145 5 2 259 70 321 5.02e-55 180
MS.gene009198.t1 AT1G05240 41.245 257 143 4 2 255 70 321 5.96e-55 180
MS.gene009198.t1 AT1G05250 41.245 257 143 4 2 255 70 321 5.96e-55 180
MS.gene009198.t1 AT4G08770 39.924 263 152 4 2 260 68 328 1.05e-54 180
MS.gene009198.t1 AT4G11290 37.692 260 158 3 2 259 69 326 1.33e-54 179
MS.gene009198.t1 AT1G71695 38.224 259 152 3 2 259 88 339 1.70e-54 180
MS.gene009198.t1 AT5G05340 39.615 260 146 5 2 259 74 324 1.91e-54 179
MS.gene009198.t1 AT4G33870 35.986 289 149 2 1 255 111 397 7.15e-54 179
MS.gene009198.t1 AT1G68850 38.577 267 150 8 2 259 74 335 2.08e-53 176
MS.gene009198.t1 AT4G08780 39.163 263 154 4 2 260 68 328 4.54e-53 176
MS.gene009198.t1 AT2G35380 40.152 264 150 6 2 259 74 335 7.21e-53 175
MS.gene009198.t1 AT2G38390 37.879 264 155 5 1 259 74 333 1.26e-52 174
MS.gene009198.t1 AT3G03670 36.923 260 157 3 2 259 67 321 1.49e-52 174
MS.gene009198.t1 AT5G64120 38.610 259 149 6 2 259 79 328 4.55e-52 172
MS.gene009198.t1 AT5G15180 36.680 259 158 4 2 259 76 329 6.04e-52 172
MS.gene009198.t1 AT2G22420 38.760 258 153 4 2 259 67 319 7.25e-52 172
MS.gene009198.t1 AT1G14540 37.066 259 154 4 2 259 65 315 2.08e-51 171
MS.gene009198.t1 AT5G19890 38.403 263 150 6 2 260 74 328 2.48e-51 171
MS.gene009198.t1 AT1G49570 37.743 257 157 2 1 255 91 346 4.12e-51 171
MS.gene009198.t1 AT4G21960 36.923 260 155 3 2 259 75 327 6.48e-51 169
MS.gene009198.t1 AT1G44970 38.314 261 157 3 1 259 88 346 7.72e-51 170
MS.gene009198.t1 AT3G32980 38.023 263 157 4 2 260 75 335 1.06e-50 170
MS.gene009198.t1 AT2G41480 40.304 263 145 5 2 259 73 328 1.21e-50 169
MS.gene009198.t1 AT5G19880 38.403 263 155 5 2 259 69 329 4.44e-50 167
MS.gene009198.t1 AT1G30870 37.405 262 151 6 2 260 95 346 8.73e-50 167
MS.gene009198.t1 AT5G64110 38.636 264 145 6 2 259 78 330 1.49e-49 166
MS.gene009198.t1 AT3G01190 38.224 259 152 6 2 259 70 321 2.71e-49 165
MS.gene009198.t1 AT2G35380 39.676 247 141 6 19 259 3 247 3.34e-49 163
MS.gene009198.t1 AT2G37130 38.550 262 151 4 1 259 42 296 1.24e-48 163
MS.gene009198.t1 AT3G49120 37.262 263 159 4 2 260 76 336 1.93e-48 164
MS.gene009198.t1 AT2G37130 38.550 262 151 4 1 259 73 327 2.21e-48 163
MS.gene009198.t1 AT3G49110 37.262 263 159 4 2 260 77 337 5.43e-48 163
MS.gene009198.t1 AT1G34510 37.165 261 148 6 1 260 65 310 5.67e-48 161
MS.gene009198.t1 AT3G17070 36.538 260 151 6 4 256 21 273 7.24e-48 160
MS.gene009198.t1 AT3G17070 36.641 262 152 6 2 256 82 336 3.38e-47 160
MS.gene009198.t1 AT4G26010 34.615 260 154 6 2 260 66 310 1.53e-46 158
MS.gene009198.t1 AT4G26010 34.615 260 154 6 2 260 94 338 2.75e-46 158
MS.gene009198.t1 AT5G58390 35.798 257 153 5 2 255 65 312 1.16e-45 155
MS.gene009198.t1 AT5G58400 36.328 256 153 5 2 255 74 321 3.33e-44 152
MS.gene009198.t1 AT5G39580 37.308 260 152 7 2 259 69 319 1.50e-43 150
MS.gene009198.t1 AT1G77100 37.500 264 149 8 1 259 67 319 2.85e-43 149
MS.gene009198.t1 AT5G24070 33.962 265 160 5 1 259 80 335 9.54e-43 149
MS.gene009198.t1 AT2G39040 35.849 265 161 6 1 259 89 350 2.70e-42 148
MS.gene009198.t1 AT4G25980 35.581 267 153 7 2 259 70 326 6.51e-41 144
MS.gene009198.t1 AT5G64100 33.969 262 158 6 2 259 81 331 1.85e-40 142
MS.gene009198.t1 AT2G43480 33.209 268 156 7 2 259 81 335 4.34e-39 139
MS.gene009198.t1 AT5G22410 35.496 262 156 8 4 260 74 327 1.73e-37 135
MS.gene009198.t1 AT2G24800 43.548 124 65 2 1 124 74 192 1.44e-22 93.6
MS.gene009198.t1 AT4G32320 31.878 229 91 6 20 238 146 319 1.02e-19 87.4
MS.gene009198.t1 AT5G39580 41.270 126 68 3 2 127 69 188 3.05e-19 84.3
MS.gene009198.t1 AT4G25980 37.594 133 70 5 2 130 115 238 2.42e-15 74.3
MS.gene009198.t1 AT3G42570 37.634 93 57 1 35 126 57 149 4.61e-15 70.9
MS.gene009198.t1 AT4G08390 27.778 198 112 4 52 241 185 359 5.02e-14 71.6
MS.gene009198.t1 AT4G08390 27.778 198 112 4 52 241 186 360 5.09e-14 71.6
MS.gene009198.t1 AT4G08390 27.778 198 112 4 52 241 186 360 5.09e-14 71.6
MS.gene009198.t1 AT4G08390 27.778 198 112 4 52 241 186 360 5.09e-14 71.6
MS.gene009198.t1 AT1G77490 29.146 199 114 4 52 244 165 342 1.04e-13 70.9
MS.gene009198.t1 AT1G77490 29.146 199 114 4 52 244 165 342 1.42e-13 70.5

Find 58 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATACTCTGGATTATATTT+AGG 0.231124 8.4:+38056914 None:intergenic
CTCTGCCTTGTTGAAGGAAT+TGG 0.278354 8.4:+38057609 None:intergenic
GAAGAGAGGAATGGGACTTT+TGG 0.327984 8.4:-38056783 MS.gene009198:CDS
CGTGACCTTGTTGTCATTGT+TGG 0.359384 8.4:-38057460 MS.gene009198:CDS
CAAGAGATGGTGGCTCTAAC+AGG 0.366286 8.4:-38057016 MS.gene009198:CDS
TTCTTCAGCGATTGCATGGT+TGG 0.397734 8.4:-38057661 None:intergenic
ACGAAAATCCTCAAAGAACT+TGG 0.405925 8.4:+38056691 None:intergenic
AAGAATTTGAAGAGAGGAAT+GGG 0.407936 8.4:-38056791 MS.gene009198:CDS
TTTGGCTACGGATAGTTTGA+TGG 0.413246 8.4:-38056765 MS.gene009198:CDS
AAATCAAACCAAGTTCTTTG+AGG 0.414406 8.4:-38056699 MS.gene009198:CDS
CTAACAGGTGCACACACAAT+AGG 0.419024 8.4:-38057001 MS.gene009198:CDS
CAAGAATTTGAAGAGAGGAA+TGG 0.430899 8.4:-38056792 MS.gene009198:CDS
TGAAGGAATTGGAGGATACT+AGG 0.436422 8.4:+38057620 None:intergenic
ACTGCAAACAGTTTAGTAAC+AGG 0.436437 8.4:-38056970 MS.gene009198:CDS
TTAAGCCCTGCAGCATACTC+TGG 0.440829 8.4:+38056902 None:intergenic
CATATTAAGGAGGGGAAGGA+TGG 0.448934 8.4:-38056641 MS.gene009198:CDS
GACATCAACCTCTCCCTCTC+AGG 0.462357 8.4:-38057577 MS.gene009198:CDS
ATCACGCTCTGCCTTGTTGA+AGG 0.475369 8.4:+38057603 None:intergenic
CAAGAGGACAAAACCATTTG+TGG 0.479493 8.4:-38056735 MS.gene009198:CDS
GCCAACCATGACCATGTCTC+AGG 0.480069 8.4:-38057356 MS.gene009198:intron
TGCCTTGTTGAAGGAATTGG+AGG 0.483730 8.4:+38057612 None:intergenic
TCAGCATACATATCCACAAA+TGG 0.490986 8.4:+38056722 None:intergenic
TATAATCCAGAGTATGCTGC+AGG 0.492335 8.4:-38056908 MS.gene009198:CDS
TTCAGCGATTGCATGGTTGG+AGG 0.503281 8.4:-38057658 None:intergenic
AACCATCTCCTGAGAGGGAG+AGG 0.503505 8.4:+38057569 None:intergenic
TTTGCATATTAAGGAGGGGA+AGG 0.504509 8.4:-38056645 MS.gene009198:CDS
CACGTCGTTGAACGCTGACA+TGG 0.507162 8.4:+38056847 None:intergenic
AGCAAAGAACATGTTGGAGC+TGG 0.508896 8.4:-38057530 MS.gene009198:CDS
CCAAGGTCTAACTCGTAAGA+TGG 0.511014 8.4:+38057433 None:intergenic
GACCTTGTTGTCATTGTTGG+TGG 0.518560 8.4:-38057457 MS.gene009198:CDS
AACCTCTCCCTCTCAGGAGA+TGG 0.518611 8.4:-38057571 MS.gene009198:CDS
ACCTGAGACATGGTCATGGT+TGG 0.519828 8.4:+38057355 None:intergenic
TCAGCACAAGAGACCACACC+GGG 0.536779 8.4:+38057502 None:intergenic
TTGGCTACGGATAGTTTGAT+GGG 0.544626 8.4:-38056764 MS.gene009198:CDS
CCATCTTACGAGTTAGACCT+TGG 0.545376 8.4:-38057433 MS.gene009198:CDS
AACAAGGTCACGTGCAGCTG+CGG 0.559854 8.4:+38057471 None:intergenic
TACGGATAGTTTGATGGGTG+AGG 0.562512 8.4:-38056759 MS.gene009198:CDS
GTTTGATGGGTGAGGACAAG+AGG 0.573583 8.4:-38056751 MS.gene009198:CDS
AGGGTTTACAGTTCAAGAGA+TGG 0.577701 8.4:-38057029 MS.gene009198:CDS
CTAAACTGTCTCTTCGACCA+AGG 0.580683 8.4:+38057416 None:intergenic
GACATGGTCATGGTTGGCAA+CGG 0.587229 8.4:+38057361 None:intergenic
ATCAAAACCATCTCCTGAGA+GGG 0.598540 8.4:+38057564 None:intergenic
TCGTTGAACGCTGACATGGA+AGG 0.606868 8.4:+38056851 None:intergenic
CACACGAGCAAAGAACATGT+TGG 0.609530 8.4:-38057536 MS.gene009198:CDS
TACATGTTATCAAACTTGCT+AGG 0.621324 8.4:+38056818 None:intergenic
ATATTTAGGATCAGTTTCAG+TGG 0.624806 8.4:+38056928 None:intergenic
GTTTACAGTTCAAGAGATGG+TGG 0.625008 8.4:-38057026 MS.gene009198:CDS
TGAGAGGGAGAGGTTGATGT+CGG 0.634718 8.4:+38057579 None:intergenic
TATTTCAAGAATTTGAAGAG+AGG 0.634886 8.4:-38056797 MS.gene009198:CDS
CATCAAAACCATCTCCTGAG+AGG 0.653088 8.4:+38057563 None:intergenic
AGGATGGAGAGATACGACAT+AGG 0.662838 8.4:-38056625 MS.gene009198:CDS
ATCCTCCAATTCCTTCAACA+AGG 0.665150 8.4:-38057614 MS.gene009198:CDS
ATAATCCAGAGTATGCTGCA+GGG 0.674221 8.4:-38056907 MS.gene009198:CDS
GGAGCTGGAATGCCCCGGTG+TGG 0.680967 8.4:-38057515 MS.gene009198:CDS
GACCACCAACAATGACAACA+AGG 0.684955 8.4:+38057455 None:intergenic
ATGTTGGAGCTGGAATGCCC+CGG 0.689095 8.4:-38057520 MS.gene009198:CDS
GTCAGCACAAGAGACCACAC+CGG 0.698599 8.4:+38057501 None:intergenic
CAGCACAAGAGACCACACCG+GGG 0.844878 8.4:+38057503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTGAATTTTGTAATA+CGG - chr8.4:38057068-38057087 MS.gene009198:intron 15.0%
! TATTTCAAGAATTTGAAGAG+AGG - chr8.4:38057441-38057460 MS.gene009198:CDS 25.0%
!! ATAGACATTTTCACTTCAAA+AGG - chr8.4:38057189-38057208 MS.gene009198:intron 25.0%
!! TAGACATTTTCACTTCAAAA+GGG - chr8.4:38057190-38057209 MS.gene009198:intron 25.0%
!!! AAGGATCTTTTTGGTAATTT+TGG + chr8.4:38057371-38057390 None:intergenic 25.0%
AAATCAAACCAAGTTCTTTG+AGG - chr8.4:38057539-38057558 MS.gene009198:CDS 30.0%
AAGAATTTGAAGAGAGGAAT+GGG - chr8.4:38057447-38057466 MS.gene009198:CDS 30.0%
GCATACTCTGGATTATATTT+AGG + chr8.4:38057327-38057346 None:intergenic 30.0%
TGTCAACAATTCAATGTAGA+AGG + chr8.4:38057137-38057156 None:intergenic 30.0%
! AGTGTTTTGCATATTAAGGA+GGG - chr8.4:38057588-38057607 MS.gene009198:CDS 30.0%
! ATATTTAGGATCAGTTTCAG+TGG + chr8.4:38057313-38057332 None:intergenic 30.0%
! ATGTAGAAGGATGAAGTATT+TGG + chr8.4:38057124-38057143 None:intergenic 30.0%
! GCTTAGTGTTTTGCATATTA+AGG - chr8.4:38057584-38057603 MS.gene009198:CDS 30.0%
! TACATGTTATCAAACTTGCT+AGG + chr8.4:38057423-38057442 None:intergenic 30.0%
! TAGTGTTTTGCATATTAAGG+AGG - chr8.4:38057587-38057606 MS.gene009198:CDS 30.0%
!!! TTGTTTTTTTACCTGAGACA+TGG + chr8.4:38056896-38056915 None:intergenic 30.0%
ACGAAAATCCTCAAAGAACT+TGG + chr8.4:38057550-38057569 None:intergenic 35.0%
ACTGCAAACAGTTTAGTAAC+AGG - chr8.4:38057268-38057287 MS.gene009198:intron 35.0%
CAAGAATTTGAAGAGAGGAA+TGG - chr8.4:38057446-38057465 MS.gene009198:CDS 35.0%
TCAGCATACATATCCACAAA+TGG + chr8.4:38057519-38057538 None:intergenic 35.0%
! GTGTTTTGCATATTAAGGAG+GGG - chr8.4:38057589-38057608 MS.gene009198:CDS 35.0%
AGGGTTTACAGTTCAAGAGA+TGG - chr8.4:38057209-38057228 MS.gene009198:intron 40.0%
ATAATCCAGAGTATGCTGCA+GGG - chr8.4:38057331-38057350 MS.gene009198:intron 40.0%
ATCAAAACCATCTCCTGAGA+GGG + chr8.4:38056677-38056696 None:intergenic 40.0%
ATCCTCCAATTCCTTCAACA+AGG - chr8.4:38056624-38056643 MS.gene009198:CDS 40.0%
CAAGAGGACAAAACCATTTG+TGG - chr8.4:38057503-38057522 MS.gene009198:CDS 40.0%
GTTTACAGTTCAAGAGATGG+TGG - chr8.4:38057212-38057231 MS.gene009198:intron 40.0%
TATAATCCAGAGTATGCTGC+AGG - chr8.4:38057330-38057349 MS.gene009198:intron 40.0%
TGAAGGAATTGGAGGATACT+AGG + chr8.4:38056621-38056640 None:intergenic 40.0%
TTGGCTACGGATAGTTTGAT+GGG - chr8.4:38057474-38057493 MS.gene009198:CDS 40.0%
TTTATGTGACCATGCATGCT+AGG - chr8.4:38057164-38057183 MS.gene009198:intron 40.0%
TTTGCATATTAAGGAGGGGA+AGG - chr8.4:38057593-38057612 MS.gene009198:CDS 40.0%
TTTGGCTACGGATAGTTTGA+TGG - chr8.4:38057473-38057492 MS.gene009198:CDS 40.0%
! CTGACATGGAAGGATCTTTT+TGG + chr8.4:38057380-38057399 None:intergenic 40.0%
! TTTTACCTGAGACATGGTCA+TGG + chr8.4:38056890-38056909 None:intergenic 40.0%
!!! GTTTTCTGCGTCGATTGATT+TGG + chr8.4:38056851-38056870 None:intergenic 40.0%
AGCAAAGAACATGTTGGAGC+TGG - chr8.4:38056708-38056727 MS.gene009198:CDS 45.0%
AGGATGGAGAGATACGACAT+AGG - chr8.4:38057613-38057632 MS.gene009198:CDS 45.0%
CACACGAGCAAAGAACATGT+TGG - chr8.4:38056702-38056721 MS.gene009198:CDS 45.0%
CATATTAAGGAGGGGAAGGA+TGG - chr8.4:38057597-38057616 MS.gene009198:CDS 45.0%
CATCAAAACCATCTCCTGAG+AGG + chr8.4:38056678-38056697 None:intergenic 45.0%
CCAAGGTCTAACTCGTAAGA+TGG + chr8.4:38056808-38056827 None:intergenic 45.0%
CCATCTTACGAGTTAGACCT+TGG - chr8.4:38056805-38056824 MS.gene009198:CDS 45.0%
CTAAACTGTCTCTTCGACCA+AGG + chr8.4:38056825-38056844 None:intergenic 45.0%
CTAACAGGTGCACACACAAT+AGG - chr8.4:38057237-38057256 MS.gene009198:intron 45.0%
GACCACCAACAATGACAACA+AGG + chr8.4:38056786-38056805 None:intergenic 45.0%
TGTCTATCACCTAGCATGCA+TGG + chr8.4:38057176-38057195 None:intergenic 45.0%
! CGTGACCTTGTTGTCATTGT+TGG - chr8.4:38056778-38056797 MS.gene009198:CDS 45.0%
! CTCTGCCTTGTTGAAGGAAT+TGG + chr8.4:38056632-38056651 None:intergenic 45.0%
! GAAGAGAGGAATGGGACTTT+TGG - chr8.4:38057455-38057474 MS.gene009198:CDS 45.0%
! GACCTTGTTGTCATTGTTGG+TGG - chr8.4:38056781-38056800 MS.gene009198:CDS 45.0%
! TACGGATAGTTTGATGGGTG+AGG - chr8.4:38057479-38057498 MS.gene009198:CDS 45.0%
! TGCCTTGTTGAAGGAATTGG+AGG + chr8.4:38056629-38056648 None:intergenic 45.0%
!! AGGAATGGGACTTTTGGCTA+CGG - chr8.4:38057461-38057480 MS.gene009198:CDS 45.0%
ACCTGAGACATGGTCATGGT+TGG + chr8.4:38056886-38056905 None:intergenic 50.0%
GACATGGTCATGGTTGGCAA+CGG + chr8.4:38056880-38056899 None:intergenic 50.0%
TCGTTGAACGCTGACATGGA+AGG + chr8.4:38057390-38057409 None:intergenic 50.0%
TTAAGCCCTGCAGCATACTC+TGG + chr8.4:38057339-38057358 None:intergenic 50.0%
! ATCACGCTCTGCCTTGTTGA+AGG + chr8.4:38056638-38056657 None:intergenic 50.0%
! GTTTGATGGGTGAGGACAAG+AGG - chr8.4:38057487-38057506 MS.gene009198:CDS 50.0%
!! CAAGAGATGGTGGCTCTAAC+AGG - chr8.4:38057222-38057241 MS.gene009198:intron 50.0%
!! TGAGAGGGAGAGGTTGATGT+CGG + chr8.4:38056662-38056681 None:intergenic 50.0%
AACAAGGTCACGTGCAGCTG+CGG + chr8.4:38056770-38056789 None:intergenic 55.0%
AACCATCTCCTGAGAGGGAG+AGG + chr8.4:38056672-38056691 None:intergenic 55.0%
AACCTCTCCCTCTCAGGAGA+TGG - chr8.4:38056667-38056686 MS.gene009198:CDS 55.0%
ATGTTGGAGCTGGAATGCCC+CGG - chr8.4:38056718-38056737 MS.gene009198:CDS 55.0%
CACGTCGTTGAACGCTGACA+TGG + chr8.4:38057394-38057413 None:intergenic 55.0%
GACATCAACCTCTCCCTCTC+AGG - chr8.4:38056661-38056680 MS.gene009198:CDS 55.0%
GCCAACCATGACCATGTCTC+AGG - chr8.4:38056882-38056901 MS.gene009198:CDS 55.0%
GTCAGCACAAGAGACCACAC+CGG + chr8.4:38056740-38056759 None:intergenic 55.0%
TCAGCACAAGAGACCACACC+GGG + chr8.4:38056739-38056758 None:intergenic 55.0%
CAGCACAAGAGACCACACCG+GGG + chr8.4:38056738-38056757 None:intergenic 60.0%
GGAGCTGGAATGCCCCGGTG+TGG - chr8.4:38056723-38056742 MS.gene009198:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 38056592 38057668 38056592 ID=MS.gene009198
chr8.4 mRNA 38056592 38057668 38056592 ID=MS.gene009198.t1;Parent=MS.gene009198
chr8.4 exon 38057357 38057668 38057357 ID=MS.gene009198.t1.exon1;Parent=MS.gene009198.t1
chr8.4 CDS 38057357 38057668 38057357 ID=cds.MS.gene009198.t1;Parent=MS.gene009198.t1
chr8.4 exon 38056592 38057074 38056592 ID=MS.gene009198.t1.exon2;Parent=MS.gene009198.t1
chr8.4 CDS 38056592 38057074 38056592 ID=cds.MS.gene009198.t1;Parent=MS.gene009198.t1
Gene Sequence

>MS.gene009198

ATGGTTGGAGGTTGTGATGCATCTGTCCTAGTATCCTCCAATTCCTTCAACAAGGCAGAGCGTGATGCCGACATCAACCTCTCCCTCTCAGGAGATGGTTTTGATGTCGTCACACGAGCAAAGAACATGTTGGAGCTGGAATGCCCCGGTGTGGTCTCTTGTGCTGACATACTTGCCGCAGCTGCACGTGACCTTGTTGTCATTGTTGGTGGTCCATCTTACGAGTTAGACCTTGGTCGAAGAGACAGTTTAGAGTCCAAATCAATCGACGCAGAAAACAAATATCCGTTGCCAACCATGACCATGTCTCAGGTAAAAAAACAAATCTATTACATTGTTCAATAAATTTTTTACTTAACACTGAAATTACAAAATTCATCGTTGAATTGAAAATCATTCAGTATGTGAGTACAATACATCAAAATTAACGTCATATAATAATATGATCATGAAATATATGATACAAATTTTTAATCAAATTGTGAATTTTGTAATACGGTAAAAAAGTTATTCAACATTGTAACATTAACCAAATACTTCATCCTTCTACATTGAATTGTTGACATAAATATTTTATGTGACCATGCATGCTAGGTGATAGACATTTTCACTTCAAAAGGGTTTACAGTTCAAGAGATGGTGGCTCTAACAGGTGCACACACAATAGGATTCTCTCACTGCAAACAGTTTAGTAACAGGCTCTTCAACTTCAGCAAGACCACTGAAACTGATCCTAAATATAATCCAGAGTATGCTGCAGGGCTTAAAAAACTCTGCCAAAATTACCAAAAAGATCCTTCCATGTCAGCGTTCAACGACGTGATGACACCTAGCAAGTTTGATAACATGTATTTCAAGAATTTGAAGAGAGGAATGGGACTTTTGGCTACGGATAGTTTGATGGGTGAGGACAAGAGGACAAAACCATTTGTGGATATGTATGCTGAAAATCAAACCAAGTTCTTTGAGGATTTTCGTAATGCTATGCGTAAGCTTAGTGTTTTGCATATTAAGGAGGGGAAGGATGGAGAGATACGACATAGGTGTGATACTTTCAACAATCTTAATGCTAATTGA
Protein sequence

>MS.gene009198.t1

MVGGCDASVLVSSNSFNKAERDADINLSLSGDGFDVVTRAKNMLELECPGVVSCADILAAAARDLVVIVGGPSYELDLGRRDSLESKSIDAENKYPLPTMTMSQVIDIFTSKGFTVQEMVALTGAHTIGFSHCKQFSNRLFNFSKTTETDPKYNPEYAAGLKKLCQNYQKDPSMSAFNDVMTPSKFDNMYFKNLKRGMGLLATDSLMGEDKRTKPFVDMYAENQTKFFEDFRNAMRKLSVLHIKEGKDGEIRHRCDTFNNLNAN